Citrus Sinensis ID: 008016

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccHHHHcccEEEHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maasflavpspsfcnhrksqvglclpsgiwqngrthfpiCLQMQKCKVKLYMIPCKAIVRFWALKRfasvgslevdtedqkhhlssgfsapndfarsktlhdhssnlwDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILElnrgtesadlvlplfslgslfikegkavdaESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIkdsnymsldDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITekykgkehpsFVTHLLNLAASYSRSKNFVEAERLLRICLDImtktvgpddqsisfpmlhLGITLYHLNRDKEAEKLVLEALYIREIafgkdslpvgeALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLgrkeekfplKKRLSNLRMKYKQKVQY
Flexible Loop (DISEMBL)
maasflavpspsfcnHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILelnrgtesADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEkykgkehpSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAfgkdslpvgEALDCLVSIQtrlgeddtklLELLKRVLRIqerefgseseevmLTLKKVVSyldklgrkeekfplkkrlsnlrmkykqkvqy
Low Complexity Region (SEG)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVgrgqegrelleecllITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered region (IsUnstruct)
************FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLE*******************************NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL**************************
Disordered Region (DISOPRED)
*****************************WQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN****Y******
Disordered Region (DISEMBL)
********PSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS*************SGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Disordered Region (DISPRO)
*AASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMxxxxxxxxxxxxxxxxxxxxxINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTxxxxxxxxxxxxxxxxxxxxxYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
Q6AZT7	1300	Nephrocystin-3 OS=Xenopus	N/A	no	0.554	0.247	0.246	8e-16
A0JM23	1311	Nephrocystin-3 OS=Xenopus	yes	no	0.554	0.245	0.240	7e-15
Q7TNH6	1325	Nephrocystin-3 OS=Mus mus	yes	no	0.559	0.245	0.236	4e-14
Q7Z494	1330	Nephrocystin-3 OS=Homo sa	yes	no	0.550	0.240	0.237	7e-14
P0CI65	1303	Nephrocystin-3 OS=Danio r	yes	no	0.592	0.264	0.242	2e-13
P46822	540	Kinesin light chain OS=Ca	yes	no	0.339	0.364	0.320	3e-10
P46825	571	Kinesin light chain OS=Do	N/A	no	0.292	0.297	0.304	1e-09
Q05090	686	Kinesin light chain OS=St	no	no	0.278	0.236	0.306	5e-09
Q07866	573	Kinesin light chain 1 OS=	no	no	0.383	0.389	0.252	2e-08
Q5R581	560	Kinesin light chain 1 OS=	yes	no	0.383	0.398	0.252	3e-08

>sp|Q6AZT7|NPHP3_XENLA Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 27/349 (7%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 912  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYMQS 971

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 972  KKFGNAEQLYKQALEISENAYGSEHLRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1031

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1032 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1091

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1092 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1151

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ + D  
Sbjct: 1152 TVKHLAVLYKRKGKLDKAVPLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDA 1211

Query: 519  LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567
             L L +R ++I E   G     V  TLK +     + G  E+   L KR
Sbjct: 1212 -LPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDYEKAAELYKR 1259

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.
Xenopus laevis (taxid: 8355)

>sp|A0JM23|NPHP3_XENTR Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 27/349 (7%)

Query: 245  VTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
            +TSL  + + LG     +G   +AV    R + I E     +   +   L  L  ++++ 
Sbjct: 923  MTSLADLYETLGRFLKDLGLLSQAVTPLQRSLEIRETALDPDHPSVAQSLHQLAGVYVQS 982

Query: 301  GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
             K  +AE ++ + L+I    YG    RV   + +LA         E+A +L KK+L++ +
Sbjct: 983  KKFGNAEQLYKQALEISENAYGSEHMRVARELDALAVLYQKQNKFEQAEQLRKKSLKIRQ 1042

Query: 361  DS--------------------NYMSLDDSIMENMRI--DLAELLHIVGRGQEGRELLEE 398
             S                      ++L     +N R   +L  L ++    +     L+ 
Sbjct: 1043 KSARRKGSMYGFALLRRRALQLEELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKR 1102

Query: 399  CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
             L + E+  G +HP     + NLAA Y+  K + +AE L    LDI  + + PD  S+++
Sbjct: 1103 SLEMRERVLGADHPDCAQSINNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAY 1162

Query: 459  PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
             + HL +      +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +   +
Sbjct: 1163 TVKHLAVLYKRKGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQAE 1221

Query: 519  LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567
               L +R ++I E   G     V  TLK +     + G  E+   L KR
Sbjct: 1222 ASPLYERAMKIYEDSLGRMHPRVGETLKNLAVLRYEEGDFEKAAELYKR 1270

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Xenopus tropicalis (taxid: 8364)

>sp|Q7TNH6|NPHP3_MOUSE Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 26/351 (7%)

Query: 226  YQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA 284
            Y   +   E+  G+ ++L +  L   + + L  +G   +AV    R + I E     +  
Sbjct: 918  YFESLKQYENSEGEENMLCLADLYETLGRFLKDLGLLSQAVVPLQRSLEIRETALDPDHP 977

Query: 285  DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN 344
             +   L  L  ++++  K  DAE ++ + L+I    YG +       + +LA        
Sbjct: 978  RVAQSLHQLAGVYVQWKKFGDAEQLYKQALEISENAYGADHPHAARELEALATLYHKQNK 1037

Query: 345  AEEAVELYKKALRVIKDSNY--------------------MSLDDSIMENMRI--DLAEL 382
             E+A    KK++ + + +                      ++L     EN R   +L  L
Sbjct: 1038 YEQAEHFRKKSVIIRQQATRRKGSLYGFALLRRRALQLEELTLGKDKPENARTLNELGVL 1097

Query: 383  LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
              +    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L    L
Sbjct: 1098 YFLQNNLETAEQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYEKAEELYERAL 1157

Query: 443  DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL 502
            DI  + + PD  S+++ + HL I      +  +A  L   A+ IR+ +FG     V  AL
Sbjct: 1158 DIRRRALAPDHPSLAYTVKHLAILYKKTGKVDKAVPLYELAVEIRQKSFGPKHPSVATAL 1217

Query: 503  DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 551
              L  + +++ +  ++ L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1218 VNLAVLHSQM-KKHSEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1267

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Mus musculus (taxid: 10090)

>sp|Q7Z494|NPHP3_HUMAN Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 151/354 (42%), Gaps = 34/354 (9%)

Query: 209  MGSMYSTLENY-------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
            +  +Y TL  +        ++++  QR + + E+        +  SL  +A V     + 
Sbjct: 942  LADLYETLGRFLKDLGLLSQAIVPLQRSLEIRETALDPDHPRVAQSLHQLASVYVQWKKF 1001

Query: 262  KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              A ++Y + + I E   G +       L +L +L+ K+ K   AE    +  KI+ K  
Sbjct: 1002 GNAEQLYKQALEISENAYGADHPYTARELEALATLYQKQNKYEQAEHFRKKSFKIHQKAI 1061

Query: 322  GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI--DL 379
             +     G A+                  L ++AL++ +    ++L     +N R   +L
Sbjct: 1062 KKKGNLYGFAL------------------LRRRALQLEE----LTLGKDTPDNARTLNEL 1099

Query: 380  AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
              L ++    +   + L+  L + E+  G +HP     L NLAA  +  K + +AE L  
Sbjct: 1100 GVLYYLQNNLETADQFLKRSLEMRERVLGPDHPDCAQSLNNLAALCNEKKQYDKAEELYE 1159

Query: 440  ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499
              LDI  + + PD  S+++ + HL I    + +  +A  L   A+ IR+ +FG     V 
Sbjct: 1160 RALDIRRRALAPDHPSLAYTVKHLAILYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVA 1219

Query: 500  EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK--VVSY 551
             AL  L  + +++ +   + L L +R L+I E   G     V  TLK   V+SY
Sbjct: 1220 TALVNLAVLYSQM-KKHVEALPLYERALKIYEDSLGRMHPRVGETLKNLAVLSY 1272

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling which regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Homo sapiens (taxid: 9606)

>sp|P0CI65|NPHP3_DANRE Nephrocystin-3 OS=Danio rerio GN=nphp3 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 158/376 (42%), Gaps = 32/376 (8%)

Query: 187  MMSGIVDSLKDDEPLLDA--ILLHMGSMYSTLENY-------EKSMLVYQRVINVLESRY 237
            M +   D+LK+ E   ++   +  + ++Y TL  +        +++   QR + + E+  
Sbjct: 896  MATEYFDALKEFEKTCESEQSMSRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETAL 955

Query: 238  GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF 297
                  +  SL  +A V     +   A ++Y + + I E   G E + +   L SL  L+
Sbjct: 956  DPDHPSVAQSLHQLAGVYVHWRKFGNAEQLYKQAMEICENAYGPEHSTVARELDSLSLLY 1015

Query: 298  IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
             K+ K   AE +  R +KI  K   +     G A+                  L ++AL+
Sbjct: 1016 QKQNKYEQAEKLRKRSVKIRQKTARQKGHMYGFAL------------------LKRRALQ 1057

Query: 358  VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH 417
            +  +   +  D +       +L  L ++       +  L   L + ++  G +HP     
Sbjct: 1058 L--EELTLGKDSTDCAKTLNELGVLYYLQNNLDAAKLFLTRSLEMRQRVLGPDHPDCAQS 1115

Query: 418  LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
            L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL +      + ++A 
Sbjct: 1116 LNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHLAMLYKRRGKLEKAV 1175

Query: 478  KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 537
             L   AL IRE +FG     V  AL  L  +  +L +  +  L L +R L++ E   G  
Sbjct: 1176 PLYELALEIREKSFGPKHPSVATALVNLAVLYCQLKQ-HSDALPLYERALKVYEDSLGRL 1234

Query: 538  SEEVMLTLKK--VVSY 551
               V  TLK   V+SY
Sbjct: 1235 HPRVGETLKNLAVLSY 1250

Required for normal ciliary development and function. Inhibits disheveled-1-induced canonical Wnt-signaling activity and may also play a role in the control of non-canonical Wnt signaling that regulates planar cell polarity. Probably acts as a molecular switch between different Wnt signaling pathways. Required for proper convergent extension cell movements.

Danio rerio (taxid: 7955)

>sp|P46822|KLC_CAEEL Kinesin light chain OS=Caenorhabditis elegans GN=klc-2 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 6/203 (2%)

Query: 340 CANGNAEEAVELYKKALRVI-KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
            + G  E AV L K+AL  + K S +   D + M N+   LA +     + +E   LL E
Sbjct: 217 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI---LALVYRDQNKYKEAANLLNE 273

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
            L I EK  G+ HP+    L NLA  + +   F +AE L +  L+I  K +G D   ++ 
Sbjct: 274 ALSIREKCLGESHPAVAATLNNLAVLFGKRGKFKDAEPLCKRALEIREKVLGDDHPDVAK 333

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
            + +L +   +  + +E EK    AL I E   G D   V +  + L S   + G+   +
Sbjct: 334 QLNNLALLCQNQGKYEEVEKYYKRALEIYESKLGPDDPNVAKTKNNLSSAYLKQGK-YKE 392

Query: 519 LLELLKRVL-RIQEREFGSESEE 540
             EL K++L R  EREFG  S E
Sbjct: 393 AEELYKQILTRAHEREFGQISGE 415

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P46825|KLC_DORPE Kinesin light chain OS=Doryteuthis pealeii PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
           GR +    L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  
Sbjct: 234 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEAANLLNDALGIRE 293

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506
           KT+GPD  +++  + +L +      + K+AE L   AL IRE   GKD   V + L+ L 
Sbjct: 294 KTLGPDHPAVAATLNNLAVLYGKRGKYKDAEPLCKRALVIREKVLGKDHPDVAKQLNNLA 353

Query: 507 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557
            +    G+ + ++    +R L I ++E G +   V  T   + S   K G+
Sbjct: 354 LLCQNQGKYE-EVERYYQRALEIYQKELGPDDPNVAKTKNNLASAYLKQGK 403

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Loligo pealeii (taxid: 1051067)

>sp|Q05090|KLC_STRPU Kinesin light chain OS=Strongylocentrotus purpuratus PE=2 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ 454
           L ++ L   EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+GPD  
Sbjct: 237 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAGNLLHDALAIREKTLGPDHP 296

Query: 455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 514
           +++  + +L +      + KEAE L   AL IRE   GKD   V + L+ L  +    G+
Sbjct: 297 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 356

Query: 515 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557
            + ++    +R L I E++ G +   V  T   + +   K G+
Sbjct: 357 YE-EVEWYYQRALEIYEKKLGPDDPNVAKTKNNLAAAYLKQGK 398

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q07866|KLC1_HUMAN Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 429
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q5R581|KLC1_PONAB Kinesin light chain 1 OS=Pongo abelii GN=KLC1 PE=2 SV=3

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 19/242 (7%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D P +  +L  +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G 
Sbjct: 250 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 309

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
            G+ K+A  +  R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY
Sbjct: 310 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 369

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
               G +D  V     +LA      G  ++A  LYK+ L    +  + S+DD   EN  I
Sbjct: 370 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD---ENKPI 426

Query: 378 DL--AELLHIVGRGQEGRELLEECLLITEKYKGK------EHPSFVTHLLNLAASYSRSK 429
            +   E     G+ ++G    E        Y G       + P+  T L NL A Y R  
Sbjct: 427 WMHAEEREECKGKQKDGTSFGE--------YGGWYKACKVDSPTVTTTLKNLGALYRRQG 478

Query: 430 NF 431
            F
Sbjct: 479 KF 480

Kinesin is a microtubule-associated force-producing protein that may play a role in organelle transport. The light chain may function in coupling of cargo to the heavy chain or in the modulation of its ATPase activity.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
224135115	579	predicted protein [Populus trichocarpa]	0.996	1.0	0.678	0.0
225455344	573	PREDICTED: nephrocystin-3-like [Vitis vi	0.962	0.975	0.680	0.0
302143919	559	unnamed protein product [Vitis vinifera]	0.938	0.974	0.699	0.0
255561868	505	kinesin light chain, putative [Ricinus c	0.864	0.994	0.689	0.0
356509235	577	PREDICTED: nephrocystin-3-like [Glycine	0.960	0.967	0.612	0.0
449497357	561	PREDICTED: nephrocystin-3-like [Cucumis	0.963	0.998	0.583	0.0
297792665	562	hypothetical protein ARALYDRAFT_495375 [	0.939	0.971	0.576	0.0
357463995	580	Kinesin light chain [Medicago truncatula	0.994	0.996	0.612	0.0
449456393	564	PREDICTED: nephrocystin-3-like [Cucumis	0.963	0.992	0.575	0.0
18423468	564	kinesin light chain-related protein [Ara	0.908	0.936	0.589	1e-180

>gi|224135115|ref|XP_002321987.1| predicted protein [Populus trichocarpa] gi|222868983|gb|EEF06114.1| predicted protein [Populus trichocarpa]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/581 (67%), Positives = 469/581 (80%), Gaps = 2/581 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           MA S L    P   N R +Q  + L S   Q G T F ICLQ QKC ++LYMIP   + R
Sbjct: 1   MAVSLLH--HPPLSNQRITQAFVDLNSRSLQRGITCFSICLQKQKCSIELYMIPTTTVAR 58

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            W LK FAS GSL  + E Q++ +SSGFS  NDF RSKT+ D SS   DG+ DFERQL E
Sbjct: 59  HWMLKTFASAGSLNAEVECQENQISSGFSTSNDFGRSKTVADSSSKPSDGVKDFERQLQE 118

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDA+DLLQANYE VKEQINAG++GIEE A LDIIALGY+ IGDLK 
Sbjct: 119 LFDEVKMMIKMGNKNDAMDLLQANYEFVKEQINAGSRGIEEAATLDIIALGYMAIGDLKS 178

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V  +L+ +  +V+ L DDEPLLD++L+HMGSMYS L  +EKSMLVYQRVI +LE  +GK 
Sbjct: 179 VGFILNKLDEVVERLTDDEPLLDSVLIHMGSMYSALGKFEKSMLVYQRVIAILERIHGKG 238

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LV+ LLGMAK+LGSIG+A KA+E+Y RVI+ILE +RG ES DLV+PL  LG+L IKE
Sbjct: 239 SAFLVSPLLGMAKILGSIGKATKAIEVYQRVISILESSRGAESKDLVVPLSGLGNLLIKE 298

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAES+F+RIL IY + YGE DGR GMA+CS+AH KCA GNAEEA+ LY+KAL+VIK
Sbjct: 299 GRATDAESLFNRILSIYKESYGEYDGRFGMALCSVAHVKCATGNAEEAINLYRKALQVIK 358

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           D++YM++DDSIME MRIDLAELLH+VGRG EGRELLEECLLITEKYKGK+HPS VTHL+N
Sbjct: 359 DADYMAVDDSIMERMRIDLAELLHVVGRGNEGRELLEECLLITEKYKGKDHPSSVTHLIN 418

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYS+SKN+V+AERLLR  L+IM K+V PDD SI+FPMLHL +TLY LN+D+EAE+L 
Sbjct: 419 LATSYSQSKNYVQAERLLRTSLEIMMKSVRPDDSSITFPMLHLAVTLYRLNQDEEAEQLT 478

Query: 481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 540
           LE L+IRE AFGKDSLPVGEALDCLVSIQTRLG+ + +LL+LLK+VL+IQE+EFG ESEE
Sbjct: 479 LEVLHIREKAFGKDSLPVGEALDCLVSIQTRLGKPEAELLDLLKQVLKIQEKEFGYESEE 538

Query: 541 VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
           VM TLKK+V YLDK GRK+EKF ++KRLS LRMKY Q +QY
Sbjct: 539 VMRTLKKIVFYLDKTGRKDEKFSMQKRLSVLRMKYNQMMQY 579

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455344|ref|XP_002272297.1| PREDICTED: nephrocystin-3-like [Vitis vinifera]

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/569 (68%), Positives = 457/569 (80%), Gaps = 10/569 (1%)

Query: 23  LCLPSGIWQNGRTH----------FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           L LPS      R H          F +CL+ QKC +KLYMIP   IV    L+ FA++GS
Sbjct: 5   LLLPSQRISQMRMHSEDLTKDVMCFSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGS 64

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
              D  +Q +H+S G  APN F RS+TL   SS+     NDFERQL ELFN VK+MI MG
Sbjct: 65  SGADGINQGNHVSLGVFAPNKFQRSRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMG 124

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
           NK DAIDLLQANYEAVKEQI+ G KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IV
Sbjct: 125 NKKDAIDLLQANYEAVKEQIDVGAKGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIV 184

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D LKDDE LLD++LLHMGS+YSTL  +EKSML+Y+R + +LE  YGK S  L+T LLGMA
Sbjct: 185 DGLKDDEALLDSVLLHMGSVYSTLGKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMA 244

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K LGSIGR  KAVEIYH+ I ILEL+RG ES DLV+PL  LG+L IKE KA DAE  F+R
Sbjct: 245 KALGSIGRVTKAVEIYHQAIAILELSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTR 304

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           IL IY + YGENDGRVG+AMCSLAH KCA G+A+EA++LY+ AL+++K S YM+LDD+IM
Sbjct: 305 ILNIYKRSYGENDGRVGIAMCSLAHVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIM 364

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           E MRIDLAELLH+VGRG+EGRELLEECLLITEKYKG++HPS VTHL+NLA SYSRSKNFV
Sbjct: 365 EKMRIDLAELLHVVGRGKEGRELLEECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFV 424

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR  L IM KT+GPDDQSI+FPMLHL +TLYHL RD+EAE+L L+AL IRE AFG
Sbjct: 425 EAERLLRTSLRIMMKTMGPDDQSITFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFG 484

Query: 493 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL 552
           K+SLPVGEALDCLVSIQTR+G+DD++LL+LLKRVL IQE+EFG ESEEVM+TLKK+V YL
Sbjct: 485 KESLPVGEALDCLVSIQTRVGKDDSELLDLLKRVLIIQEKEFGYESEEVMITLKKIVFYL 544

Query: 553 DKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
           DK+GRK+EKFPL+KRLS LR K+K+ +QY
Sbjct: 545 DKMGRKDEKFPLQKRLSLLRNKHKESIQY 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143919|emb|CBI23024.3| unnamed protein product [Vitis vinifera]

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/545 (69%), Positives = 451/545 (82%)

Query: 37  FPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFAR 96
           F +CL+ QKC +KLYMIP   IV    L+ FA++GS   D  +Q +H+S G  APN F R
Sbjct: 15  FSLCLKRQKCNIKLYMIPASTIVHHGVLRPFATIGSSGADGINQGNHVSLGVFAPNKFQR 74

Query: 97  SKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN 156
           S+TL   SS+     NDFERQL ELFN VK+MI MGNK DAIDLLQANYEAVKEQI+ G 
Sbjct: 75  SRTLLHSSSSPSGDENDFERQLQELFNAVKTMIKMGNKKDAIDLLQANYEAVKEQIDVGA 134

Query: 157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           KG+E+ AILDII LGY+ +GDLK V+SLLDMM  IVD LKDDE LLD++LLHMGS+YSTL
Sbjct: 135 KGMEQAAILDIIVLGYMLVGDLKLVRSLLDMMDKIVDGLKDDEALLDSVLLHMGSVYSTL 194

Query: 217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE 276
             +EKSML+Y+R + +LE  YGK S  L+T LLGMAK LGSIGR  KAVEIYH+ I ILE
Sbjct: 195 GKFEKSMLMYRRALEILEMTYGKDSAFLITPLLGMAKALGSIGRVTKAVEIYHQAIAILE 254

Query: 277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA 336
           L+RG ES DLV+PL  LG+L IKE KA DAE  F+RIL IY + YGENDGRVG+AMCSLA
Sbjct: 255 LSRGAESEDLVVPLLGLGNLLIKERKATDAEIPFTRILNIYKRSYGENDGRVGIAMCSLA 314

Query: 337 HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
           H KCA G+A+EA++LY+ AL+++K S YM+LDD+IME MRIDLAELLH+VGRG+EGRELL
Sbjct: 315 HVKCAKGDADEAIQLYRNALQIVKVSKYMALDDNIMEKMRIDLAELLHVVGRGKEGRELL 374

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
           EECLLITEKYKG++HPS VTHL+NLA SYSRSKNFVEAERLLR  L IM KT+GPDDQSI
Sbjct: 375 EECLLITEKYKGEDHPSSVTHLINLATSYSRSKNFVEAERLLRTSLRIMMKTMGPDDQSI 434

Query: 457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD 516
           +FPMLHL +TLYHL RD+EAE+L L+AL IRE AFGK+SLPVGEALDCLVSIQTR+G+DD
Sbjct: 435 TFPMLHLAVTLYHLKRDEEAEQLTLKALQIREAAFGKESLPVGEALDCLVSIQTRVGKDD 494

Query: 517 TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK 576
           ++LL+LLKRVL IQE+EFG ESEEVM+TLKK+V YLDK+GRK+EKFPL+KRLS LR K+K
Sbjct: 495 SELLDLLKRVLIIQEKEFGYESEEVMITLKKIVFYLDKMGRKDEKFPLQKRLSLLRNKHK 554

Query: 577 QKVQY 581
           + +QY
Sbjct: 555 ESIQY 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561868|ref|XP_002521943.1| kinesin light chain, putative [Ricinus communis] gi|223538868|gb|EEF40467.1| kinesin light chain, putative [Ricinus communis]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/502 (68%), Positives = 418/502 (83%)

Query: 80  QKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAID 139
           Q+   SSG S  + F RS+ L D  SN  +G+NDF RQL ELF+EVK+MI+MGN +DA+D
Sbjct: 4   QEDVASSGSSNESAFLRSRPLLDDPSNPSNGVNDFARQLQELFDEVKAMILMGNSSDAMD 63

Query: 140 LLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE 199
           LLQANYE VKE I+AG +GIEE A+LDIIALGY+ IGDL  V S+L++++ ++ +LKDD 
Sbjct: 64  LLQANYEIVKELIDAGARGIEEAAMLDIIALGYMAIGDLGTVGSILNLLNMVIKNLKDDG 123

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           PLLD++L+HMGSMYS L  +EKSM+ YQRVI+VLES+YG++SI +V  LLGM KVLGSIG
Sbjct: 124 PLLDSVLMHMGSMYSALGKFEKSMIAYQRVISVLESKYGESSIFIVPPLLGMGKVLGSIG 183

Query: 260 RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
           R  KA E+Y RVI ILE  RG ES +LV+PLF LG+L +KEG+  DAE  F RIL IY K
Sbjct: 184 RVNKATEVYQRVIIILESGRGAESKELVVPLFGLGNLLMKEGRTTDAEIHFIRILNIYRK 243

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           +YGENDGR GMA+CS+A+ KC+ GN EEA++LY+KAL VIKDSNYM+ DD++ME MRIDL
Sbjct: 244 LYGENDGRYGMALCSVANLKCSTGNVEEAIDLYRKALEVIKDSNYMAKDDTVMEKMRIDL 303

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           AELLH+VGRG+EGRELLEECLLITE+YKGKEHPS V HLLNLA SYS+SKNFVEAERLLR
Sbjct: 304 AELLHVVGRGKEGRELLEECLLITEEYKGKEHPSSVAHLLNLATSYSQSKNFVEAERLLR 363

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG 499
           I L+IM KTV P+DQS++FPML L +TLY+LNRD+EAE+L +E L IRE AFGKDSLPVG
Sbjct: 364 ISLEIMMKTVSPEDQSVTFPMLQLAMTLYNLNRDEEAEQLAVEVLRIREKAFGKDSLPVG 423

Query: 500 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE 559
           EALDCLVSIQTRL   DT+LLELLKRVL+IQE+EFG ESEEV+ TLKK+V YL K+GRK+
Sbjct: 424 EALDCLVSIQTRLERADTELLELLKRVLKIQEKEFGYESEEVLQTLKKIVFYLAKVGRKD 483

Query: 560 EKFPLKKRLSNLRMKYKQKVQY 581
           EKF ++KRLS LR KYKQ V+Y
Sbjct: 484 EKFSMQKRLSVLRTKYKQMVRY 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509235|ref|XP_003523356.1| PREDICTED: nephrocystin-3-like [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/581 (61%), Positives = 441/581 (75%), Gaps = 23/581 (3%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           + +SF  + +     H    + LC    I     T F +C Q QK   KLY+IP + +  
Sbjct: 20  LTSSFTGIRTSKELRH---MLSLCELKSI-----TCFSVCNQKQKYNQKLYIIPVRTVCV 71

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLE 120
            + + R +SVGS+E+          SGFSAPND+ R              ++  E++L E
Sbjct: 72  RFCISR-SSVGSVELSGTGTHSDAYSGFSAPNDYQR--------------IDSLEKELEE 116

Query: 121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKF 180
           LF+EVK MI MGNKNDAIDLL ANYE VKE++NAG KGIEE A LDIIALGY+ +GDLKF
Sbjct: 117 LFDEVKRMISMGNKNDAIDLLTANYEVVKERLNAGTKGIEEAATLDIIALGYMAVGDLKF 176

Query: 181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT 240
           V SLL+MM  +VD+LKDD P LD+IL+HMGSMY+TL  +EKS+ VYQR + ++E  YG  
Sbjct: 177 VGSLLNMMKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYQRAVYIMERTYGMD 236

Query: 241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE 300
           S  LVT  LGMAKVLGSIG+A KA+E Y RVIT+LE +RGT+S DLV+PL SL +L +KE
Sbjct: 237 STFLVTPCLGMAKVLGSIGKATKAIETYQRVITLLESSRGTKSKDLVVPLLSLANLLLKE 296

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           G+A DAE+ F+R+L IYT++YG+NDG++GMAM SLA  KCA G ++EA++L+K+A++V+K
Sbjct: 297 GRANDAETHFTRVLNIYTELYGQNDGKIGMAMSSLARVKCAQGKSDEAIQLFKRAIQVMK 356

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           DSNY+S DD+IME MR+DLAELLH VGRGQEGRELLEECL ITE+YKGKEHPS VTH++N
Sbjct: 357 DSNYLSPDDNIMEKMRVDLAELLHTVGRGQEGRELLEECLWITERYKGKEHPSLVTHMIN 416

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           LA SYSRSKN+ +AE LLR  L IM K  G DDQSISFPMLHL +TLYHL +D+EAEKL 
Sbjct: 417 LATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKKDEEAEKLA 476

Query: 481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 540
           LE L IRE AFGK+SLPVGEALDCLVSIQTRLG D+++LLELL+R+L IQEREFG ESEE
Sbjct: 477 LEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGRDESELLELLRRILNIQEREFGRESEE 536

Query: 541 VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
           V++TLKK+V YLDKLG+K+EK  L++RLS L  KYKQ V Y
Sbjct: 537 VLVTLKKIVYYLDKLGKKDEKLTLQRRLSVLSKKYKQMVNY 577

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497357|ref|XP_004160380.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/579 (58%), Positives = 441/579 (76%), Gaps = 19/579 (3%)

Query: 3   ASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFW 62
           A+FL + SPS+ +       +C  + I     T   +CLQ  KC +KLY +P  A   F 
Sbjct: 2   ATFLLLSSPSYSH------CICKRASI-----TCSSVCLQ--KCNIKLYAVPVGA---FS 45

Query: 63  ALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELF 122
            L       S       ++ H+SS F+ P  + RS   H H     + + +FE QL EL 
Sbjct: 46  CLSASTPSASSRAAFGAERKHVSSAFT-PIGYQRSD--HMHYRTDCNTVAEFEVQLEELL 102

Query: 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           NEV+++ M G K+DA++LLQANYEAVKEQ+ +G  GIE+ A+LDI+ALGY+ +GDLKFV 
Sbjct: 103 NEVRTLTMSGRKSDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVA 162

Query: 183 SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242
           S+LD+++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S 
Sbjct: 163 SVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSS 222

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L+T +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KEGK
Sbjct: 223 FLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKEGK 282

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
             DAE+ F+RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +IKDS
Sbjct: 283 GKDAETCFARIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEIIKDS 342

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
           N ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+NLA
Sbjct: 343 NDIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLVNLA 402

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
           ASYSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L LE
Sbjct: 403 ASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQLALE 462

Query: 483 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVM 542
            L IRE AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +EV+
Sbjct: 463 VLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGKEVI 522

Query: 543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
            TLKK+V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 523 DTLKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 561

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792665|ref|XP_002864217.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata] gi|297310052|gb|EFH40476.1| hypothetical protein ARALYDRAFT_495375 [Arabidopsis lyrata subsp. lyrata]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/569 (57%), Positives = 428/569 (75%), Gaps = 23/569 (4%)

Query: 13  FCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGS 72
           + N   SQ G       WQ G     +C + QK K KLY+IP     R + L    SV S
Sbjct: 17  WANQLSSQSGSAPRDSTWQYG-----VCFRNQKRKTKLYLIPA----RHFLLTPIDSVTS 67

Query: 73  LEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMG 132
               +E    H +SG S       S  +H+        M +FE +L ELFNEVK+M+ +G
Sbjct: 68  ----SESASVHATSGVSEVQRSTSSNNVHE--------MEEFEMELQELFNEVKAMVKIG 115

Query: 133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV 192
            + DA+DLL+ANY AVKE++++G KGIE+ A+LDIIALGY+ +GDLK + +LLDM++ IV
Sbjct: 116 KERDAVDLLRANYVAVKEEMDSGLKGIEQAAVLDIIALGYMAVGDLKPIPALLDMINKIV 175

Query: 193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
           D+LKD EPLLD++L+H+GSMYS +  +E S+L +QR + +LE+RYGK + LLVT LLG+A
Sbjct: 176 DNLKDSEPLLDSVLMHVGSMYSAIGKFENSILTHQRAVRILENRYGKGNTLLVTPLLGLA 235

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           K+  S G+A KA+ +Y R +TILE NRG++S DLV+PLFSLG L +KEGKA +AE  F+R
Sbjct: 236 KIFASDGKATKAIGVYERTVTILERNRGSQSEDLVMPLFSLGKLLLKEGKAAEAEIHFTR 295

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM 372
           I+ IY K+YGE DGRVGMAMCSLA+AKC+ G+A EAV++YK ALR+IKDS  M++D+SI+
Sbjct: 296 IVNIYKKIYGEKDGRVGMAMCSLANAKCSKGDANEAVDIYKNALRIIKDS--MAIDNSIL 353

Query: 373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV 432
           ENMR DLAELLH VGRG EGRELLEECLLI E++KGK HPS  THL+NLAASYSRSKN+V
Sbjct: 354 ENMRTDLAELLHFVGRGDEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKNYV 413

Query: 433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
           EAERLLR CL+IM ++VG +DQSI+FPML+L +TL  LNRD+EAE++ L+ L IRE AF 
Sbjct: 414 EAERLLRTCLNIMEESVGSEDQSITFPMLNLAVTLSQLNRDEEAEQVALKVLRIREKAFA 473

Query: 493 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL 552
           KDSLPVGEALDCLVSIQ RLG DD ++L LLKRV+ IQE EFGS +EE+++TL+K++ +L
Sbjct: 474 KDSLPVGEALDCLVSIQARLGRDDGEILGLLKRVMMIQEEEFGSSAEELIVTLQKIIHFL 533

Query: 553 DKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
           +KL  K+EKF  ++RL+ LR K+KQ + +
Sbjct: 534 EKLEMKDEKFKFRRRLALLREKHKQSLSF 562

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463995|ref|XP_003602279.1| Kinesin light chain [Medicago truncatula] gi|355491327|gb|AES72530.1| Kinesin light chain [Medicago truncatula]

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/581 (61%), Positives = 434/581 (74%), Gaps = 3/581 (0%)

Query: 1   MAASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVR 60
           M AS   VPSPSF   R S+    + S         F +C Q Q    KLY+IP + I R
Sbjct: 1   MEASSCFVPSPSFIGFRTSKDRPHVLSLQEFKRIISFSVCNQKQNYNEKLYIIPIRTISR 60

Query: 61  FWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLH-DHSSNLWDGMNDFERQLL 119
           F   + FA   SLE+     +     G+SAP++  R  TL  D +S+ +   ++F+++L 
Sbjct: 61  FCISRSFAK--SLELGGTGPQSDALLGYSAPDEDNRRFTLSLDSASSAFHRFSNFDKELE 118

Query: 120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK 179
           ELF EVK MI MG K+DAIDLL ANYE VKE++NAG KGIEE AILDI+ALGY+ +GDLK
Sbjct: 119 ELFGEVKKMIKMGKKSDAIDLLNANYEMVKERLNAGTKGIEEAAILDILALGYMAVGDLK 178

Query: 180 FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK 239
            V  LL+ +  +VD+LKDD P LD+I++HMG+MY+TL  +E+S+  YQR + ++E  YGK
Sbjct: 179 SVGYLLNSLKEVVDTLKDDAPHLDSIVMHMGNMYATLNKFEESLNTYQRAVYIVERIYGK 238

Query: 240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK 299
            S +LVT  LGMAK LGSIG+A KAVEIY  VIT+LE NRG ES DLV+PL SLG+L +K
Sbjct: 239 DSTILVTPHLGMAKALGSIGKATKAVEIYQHVITLLESNRGAESKDLVVPLLSLGNLLLK 298

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
           EG+A DAES FSR+L IYTKVYGENDGR+GMAM SLA  KCA G  +EA+ L+K+AL+V+
Sbjct: 299 EGRANDAESRFSRVLNIYTKVYGENDGRIGMAMSSLAQVKCALGKTDEAIHLFKRALKVM 358

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419
           KDSNYMS D+SIME MR+DLAELLH  GRGQ+GRE+LEECLLITE+YKGKEHPS  TH++
Sbjct: 359 KDSNYMSPDNSIMEKMRVDLAELLHTSGRGQKGREILEECLLITERYKGKEHPSLATHMI 418

Query: 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           NLA SY+RSKN+ EAE LLR  L IM K  G DDQSISFPML L  TLYHL  D+EAEKL
Sbjct: 419 NLATSYTRSKNYAEAEHLLRRSLQIMIKHNGTDDQSISFPMLQLAATLYHLKNDEEAEKL 478

Query: 480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539
            LE L IRE AFG  SLPVGEALDCLVSIQ RLG+DD++LLELL+R+L IQE+ FG ESE
Sbjct: 479 ALEVLRIREKAFGDYSLPVGEALDCLVSIQARLGKDDSELLELLRRILIIQEKGFGHESE 538

Query: 540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ 580
           +V+LTLKK+V YLDKLGRK+EK PL++RLS LR KYK  + 
Sbjct: 539 QVLLTLKKIVYYLDKLGRKDEKLPLQRRLSVLRKKYKHMIH 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456393|ref|XP_004145934.1| PREDICTED: nephrocystin-3-like [Cucumis sativus]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/582 (57%), Positives = 437/582 (75%), Gaps = 22/582 (3%)

Query: 3   ASFLAVPSPSFCNHRKSQVGLCLPSGIWQNGRTHFPICLQMQKCKVKLYMIPCKAIVRFW 62
           A+FL + SPS+ +       +C  + I     T   +CLQ  KC +KLY +P  A   F 
Sbjct: 2   ATFLLLSSPSYSH------CICKRASI-----TCSSVCLQ--KCNIKLYAVPVGA---FS 45

Query: 63  ALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELF 122
            L       S       ++ H+SS F+ P  + RS   H H     + + +FE QL EL 
Sbjct: 46  CLSASTPSASSRAAFGAERKHVSSAFT-PIGYQRSD--HMHYRTDCNTVAEFEVQLEELL 102

Query: 123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           NEV+++ M G K+DA++LLQANYEAVKEQ+ +G  GIE+ A+LDI+ALGY+ +GDLKFV 
Sbjct: 103 NEVRTLTMSGRKSDAVELLQANYEAVKEQMESGAVGIEQAAVLDIVALGYLTVGDLKFVA 162

Query: 183 SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242
           S+LD+++ +VDSL D EP LD++LLHMGSMYSTL+ +EKS+ VY+R I+++E ++G+ S 
Sbjct: 163 SVLDILNKVVDSLTDGEPFLDSVLLHMGSMYSTLKKFEKSISVYKRAIDIMEKKFGEDSS 222

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L+T +LGMAKVLG+IGRA KAVE Y+R I++LE +RG E+ DLV+PL SLG+L +KE  
Sbjct: 223 FLITPILGMAKVLGTIGRAGKAVECYNRAISLLESSRGFENEDLVIPLISLGNLMLKESL 282

Query: 303 AVDAESVFS---RILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
           A+D    F    RI+ IY K+YGE +G+VGMAM SLA+AKCA G A+EAV L ++AL +I
Sbjct: 283 ALDYSLTFMAPFRIVNIYEKLYGEKNGKVGMAMYSLANAKCARGEADEAVTLCRRALEII 342

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL 419
           KDSN ++LDDS +E MRIDLAELLH++GR  EGRELLEECLLI E+ KGKEHPS V HL+
Sbjct: 343 KDSNDIALDDSTIEKMRIDLAELLHVLGRANEGRELLEECLLINERLKGKEHPSSVKHLV 402

Query: 420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           NLAASYSRSKN+VEAERLLRI LDIM K VG DDQSI+ PML+L +TLY+L +D +AE+L
Sbjct: 403 NLAASYSRSKNYVEAERLLRIGLDIMIKAVGSDDQSITVPMLNLAVTLYNLKQDNDAEQL 462

Query: 480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539
            LE L IRE AFGKDSLPVGEALDCLVSIQ+RLG+D+++LL+LLKR+L IQE+EFG + +
Sbjct: 463 ALEVLRIRENAFGKDSLPVGEALDCLVSIQSRLGKDESELLKLLKRILTIQEKEFGEDGK 522

Query: 540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQY 581
           EV+ TLKK+V  +DKLG K+EKF L+KRLS LRMK+K +++Y
Sbjct: 523 EVIDTLKKIVFCMDKLGMKDEKFLLQKRLSMLRMKFKNQMRY 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423468|ref|NP_568784.1| kinesin light chain-related protein [Arabidopsis thaliana] gi|53828571|gb|AAU94395.1| At5g53080 [Arabidopsis thaliana] gi|332008918|gb|AED96301.1| kinesin light chain-related protein [Arabidopsis thaliana]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 320/543 (58%), Positives = 421/543 (77%), Gaps = 15/543 (2%)

Query: 39  ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
           +CL+ QK K KLY+IP +  +            S  +D+       +S ++       S+
Sbjct: 37  VCLRNQKRKPKLYLIPARHFL------------STPIDSVSSSSITASRYATS---GVSE 81

Query: 99  TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
                SSN    M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct: 82  VQRSTSSNNVTEMEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query: 159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
           IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct: 142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query: 219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
           +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct: 202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query: 279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
           RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct: 262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
           KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH VGRG EGRELLEE
Sbjct: 322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CLLI E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct: 382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
           PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLPVGEALDCLVSIQ RLG DD +
Sbjct: 442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGEALDCLVSIQARLGRDDGE 501

Query: 519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578
           +L LLKRV+ IQE+EFG  ++E+++TL+K++ +L+KL  K++KF  ++RL+ LR +YKQ 
Sbjct: 502 ILGLLKRVMMIQEKEFGPSAQELIVTLQKIIHFLEKLEMKDDKFKFRRRLALLRERYKQS 561

Query: 579 VQY 581
           + Y
Sbjct: 562 LSY 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2168387	564	AT5G53080 [Arabidopsis thalian	0.908	0.936	0.570	2.9e-158
UNIPROTKB|Q5LU72	374	SPO1186 "TPR domain protein" [	0.488	0.759	0.272	2.2e-15
TIGR_CMR|SPO_1186	374	SPO_1186 "TPR domain protein"	0.488	0.759	0.272	2.2e-15
ASPGD|ASPL0000018313	1288	AN3547 [Emericella nidulans (t	0.729	0.329	0.237	2.3e-15
UNIPROTKB|E1BSU8	1316	NPHP3 "Uncharacterized protein	0.285	0.126	0.315	7.7e-14
UNIPROTKB|Q6AZT7	1300	nphp3 "Nephrocystin-3" [Xenopu	0.354	0.158	0.225	1.3e-08
UNIPROTKB|A0JM23	1311	nphp3 "Nephrocystin-3" [Xenopu	0.354	0.157	0.220	7.7e-09
ZFIN|ZDB-GENE-091204-117	1302	nphp3 "nephronophthisis 3" [Da	0.285	0.127	0.309	9.9e-12
RGD|1563856	1325	Nphp3 "nephronophthisis 3 (ado	0.285	0.125	0.309	1.3e-11
UNIPROTKB|D4A1W7	1325	Acad11 "Acyl-CoA dehydrogenase	0.285	0.125	0.309	1.3e-11

TAIR|locus:2168387 AT5G53080 [Arabidopsis thaliana (taxid:3702)]

 Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
 Identities = 310/543 (57%), Positives = 412/543 (75%)

Query:    39 ICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK 98
             +CL+ QK K KLY+IP     R +      SV S  +       + +SG S   +  RS 
Sbjct:    37 VCLRNQKRKPKLYLIPA----RHFLSTPIDSVSSSSITAS---RYATSGVS---EVQRST 86

Query:    99 TLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG 158
             +    S+N+ + M +FE +L ELFNEVKSM+ +G ++DA+DLL+ANY AVKE++++G KG
Sbjct:    87 S----SNNVTE-MEEFEMELQELFNEVKSMVKIGKESDAMDLLRANYVAVKEELDSGLKG 141

Query:   159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN 218
             IE+ A+LDIIALGY+ +GDLK V +LLDM++ IVD+LKD EPLLD++L+H+GSMYS +  
Sbjct:   142 IEQAAVLDIIALGYMAVGDLKPVPALLDMINKIVDNLKDSEPLLDSVLMHVGSMYSVIGK 201

Query:   219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN 278
             +E ++LV+QR I +LE+RYGK + LLVT LLGMAK   S G+A KA+ +Y R +TILE N
Sbjct:   202 FENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILERN 261

Query:   279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA 338
             RG+ES DLV+PLFSLG L +KEGKA +AE  F+ I+ IY K+YGE DGRVGMAMCSLA+A
Sbjct:   262 RGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIVNIYKKIYGERDGRVGMAMCSLANA 321

Query:   339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVXXXXXXXXXXXX 398
             KC+ G+A EAV++Y+ ALR+IKDSNYM++D+SI+ENMRIDLAELLH V            
Sbjct:   322 KCSKGDANEAVDIYRNALRIIKDSNYMTIDNSILENMRIDLAELLHFVGRGDEGRELLEE 381

Query:   399 XXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
                I E++KGK HPS  THL+NLAASYSRSKN+VEAERLLR CL+IM  +VG + QSI+F
Sbjct:   382 CLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITF 441

Query:   459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
             PML+L +TL  LNRD+EAE++ L+ L IRE AFG+DSLPVGEALDCLVSIQ RLG DD +
Sbjct:   442 PMLNLAVTLSQLNRDEEAEQIALKVLRIREKAFGEDSLPVGEALDCLVSIQARLGRDDGE 501

Query:   519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK 578
             +L LLKRV+ IQE+EFG  ++E+++TL+K++ +L+KL  K++KF  ++RL+ LR +YKQ 
Sbjct:   502 ILGLLKRVMMIQEKEFGPSAQELIVTLQKIIHFLEKLEMKDDKFKFRRRLALLRERYKQS 561

Query:   579 VQY 581
             + Y
Sbjct:   562 LSY 564

GO:0009507 "chloroplast" evidence=ISM

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|Q5LU72 SPO1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1186 SPO_1186 "TPR domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 220 (82.5 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 78/286 (27%), Positives = 119/286 (41%)

Query:   207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE 266
             L +   Y     + ++  +Y++V+     ++G       T L  +A+VL +  R  +A  
Sbjct:    69 LEVAGRYLAEARFTEAEAIYRQVLVSFPEKHGFNHPGYATRLNNLAEVLRATARYDEAES 128

Query:   267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG 326
             +Y + + I     G E  D  + L +L  L    G+   AE ++   + I  KV GE   
Sbjct:   129 LYRQALEIDREALGLEHPDYGIDLLNLAGLLHDRGRYEAAEPLYREAMTIIGKVVGEEHY 188

Query:   327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV 386
             R   A  +LA         EEA  L ++AL +   S  +    S+      +LAELL   
Sbjct:   189 RYATAQNNLAGLLQDMLRFEEAEALCRQALEIT--SKTLGESHSVYATRLNNLAELLGTT 246

Query:   387 XXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
                            IT+K  G+EHP F   L NLA     +  + EAE L R  L+I  
Sbjct:   247 ERYGEAEPLYRQALEITQKTLGEEHPDFAIRLNNLAVLLKATGRYEEAEPLYRQALEITH 306

Query:   447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG 492
             +T+G      +  + +    L    R  EAE L  +AL I E A G
Sbjct:   307 RTLGEAHPDYATRLNNFAGLLDSTERYDEAEPLYRQALEICEKALG 352

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000018313 AN3547 [Emericella nidulans (taxid:162425)]

 Score = 230 (86.0 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 106/446 (23%), Positives = 191/446 (42%)

Query:   131 MGNK-NDAIDLLQANYEAVKEQINAGNK---GIEEVAILDIIA-LGYVYI--GDLKFVQS 183
             +GN  +D   L +A  E + ++  AG +   G +  + LD +  LG +Y   G LK  + 
Sbjct:   801 LGNLYSDQGKLKEA--EKMYQRALAGKEKALGPDHTSTLDTVNNLGILYSDQGKLKEAEE 858

Query:   184 LLDM-MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI 242
             +    ++G   +L  D       + ++G++YS     +++  +YQ+ +   E   G    
Sbjct:   859 MYQRALAGYEKALGPDHTSTLVTVNNLGNLYSDQGKLKEAEKMYQQALKGYEKALGPDHT 918

Query:   243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
               + ++  +  +  + G+ K+A E+Y + +   E   G +    +  + +LG L+  +GK
Sbjct:   919 STLDTVNNLGSLYKNQGKLKEAEEMYQQALAGKEKALGPDHTSTLDTVNNLGILYKNQGK 978

Query:   303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
               +AE ++ R L    K  G +     M + +L       G  +EA ++Y++AL   + +
Sbjct:   979 LKEAEEMYQRALAGKEKALGPDHTSTLMTVNNLGSLYSDQGKLKEAEKMYQQALAGYEKA 1038

Query:   363 NYMSLDDSIMENMRIDLAELLHIVXXXXXXXXXXXXXXXITEKYKGKEHPSFVTHLLNLA 422
               +  D +       +L  L                     EK  G +H S +  + NL 
Sbjct:  1039 --LGPDHTSTLITVNNLGNLYSDQGKLKEAEKMYQQALAGYEKALGPDHTSTLVTVNNLG 1096

Query:   423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
               YS      EAE++ +  L    K VGPD  S    + +LGI      + KEAEK+  +
Sbjct:  1097 NLYSDQGKLKEAEKMYQQALAGYEKAVGPDHTSTLDTVNNLGILYSDQGKLKEAEKMYQQ 1156

Query:   483 ALYIREIAFGKD---SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE 539
             AL   E A   D   +L     L  L   Q +L E +    E+ ++ L  +E+  G +  
Sbjct:  1157 ALAGYEKALSPDHTSTLMTVNNLGSLYKNQGKLKEAE----EMYQQALAGKEKALGPDHT 1212

Query:   540 EVMLTLKKV-VSYLD--KLGRKEEKF 562
               ++T+  + + Y D  KL   EE F
Sbjct:  1213 STLMTVNNLGILYSDQGKLKEAEEMF 1238

GO:0005871 "kinesin complex" evidence=IEA

GO:0009116 "nucleoside metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E1BSU8 NPHP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
 Identities = 54/171 (31%), Positives = 84/171 (49%)

Query:   404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
             E+  G  HP     L NLAA Y+  K++ +AE L    LDI  + + PD  S+++ + HL
Sbjct:  1110 ERVLGPNHPDCAQSLNNLAALYNEKKHYDKAEELYEKALDIRRRALAPDHPSLAYTVKHL 1169

Query:   464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
              +    + +  +A  L   A+ IR+ +FG     V  AL  L  +  ++ +  T+ L L 
Sbjct:  1170 AVLYKKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQM-KKQTEALPLY 1228

Query:   524 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 572
             +R L+I E  FG     V  TLK   V+SY  + G  E+   L KR   ++
Sbjct:  1229 ERALKIYEDSFGHMHPRVGETLKNLAVLSY--EGGDFEKAAELYKRAMEIK 1277

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6AZT7 nphp3 "Nephrocystin-3" [Xenopus laevis (taxid:8355)]

 Score = 168 (64.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 48/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1054 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1110

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1111 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1170

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  DA  ++ R +KIY    G   
Sbjct:  1171 PLYELAVDIRQKSFGPKHPSVATALVNLAVLYCQMKKQDDALPLYERAMKIYEDSLGRMH 1230

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1231 PRVGETLKNLAVLRYEEGDYEKAAELYKRAMEI 1263

GO:0005929 "cilium" evidence=ISS

GO:0060027 "convergent extension involved in gastrulation" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IMP

UNIPROTKB|A0JM23 nphp3 "Nephrocystin-3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 47/213 (22%), Positives = 101/213 (47%)

Query:   150 EQINAGNKGIEEVAILDIIALGYVYIGDLK----FVQSLLDMMSGIVDSLKDDEPLLDAI 205
             E++  G    +    L+ + + Y    +L+    F++  L+M   ++ +   D P     
Sbjct:  1065 EELTLGKDTSDNARTLNELGVLYYLQNNLETAETFLKRSLEMRERVLGA---DHPDCAQS 1121

Query:   206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             + ++ ++Y+  + Y+K+  +Y+R +++           L  ++  +A +    G+  KAV
Sbjct:  1122 INNLAALYNEKKQYDKAEELYERALDIRRRALSPDHPSLAYTVKHLAVLYKRKGKLDKAV 1181

Query:   266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
              +Y   + I + + G +   +   L +L  L+ +  K  +A  ++ R +KIY    G   
Sbjct:  1182 PLYELAVEIRQKSFGPKHPSVATALVNLAVLYCQMKKQAEASPLYERAMKIYEDSLGRMH 1241

Query:   326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
              RVG  + +LA  +   G+ E+A ELYK+A+ +
Sbjct:  1242 PRVGETLKNLAVLRYEEGDFEKAAELYKRAMEI 1274

GO:0005929 "cilium" evidence=ISS

GO:0060271 "cilium morphogenesis" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISS

GO:2000095 "regulation of Wnt receptor signaling pathway, planar cell polarity pathway" evidence=ISS

ZFIN|ZDB-GENE-091204-117 nphp3 "nephronophthisis 3" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 9.9e-12, Sum P(2) = 9.9e-12
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
             ++  G +HP     L NLAA +S  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1096 QRVLGPDHPDCAQSLNNLAALHSERKEYESAEELYERALDIRKRALAPDHPSLAYTLKHL 1155

Query:   464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
              +      + ++A  L   AL IRE +FG     V  AL  L  +  +L +  +  L L 
Sbjct:  1156 AMLYKRRGKLEKAVPLYELALEIREKSFGPKHPSVATALVNLAVLYCQL-KQHSDALPLY 1214

Query:   524 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 572
             +R L++ E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1215 ERALKVYEDSLGRLHPRVGETLKNLAVLSYEE--GDFEKAAELYKRAMEIK 1263

GO:0070121 "Kupffer's vesicle development" evidence=IMP

GO:0007601 "visual perception" evidence=IMP

GO:0060026 "convergent extension" evidence=IMP

GO:0003146 "heart jogging" evidence=IMP

GO:0060972 "left/right pattern formation" evidence=IMP

RGD|1563856 Nphp3 "nephronophthisis 3 (adolescent)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   524 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 572
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0001822 "kidney development" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=ISO

GO:0007163 "establishment or maintenance of cell polarity" evidence=ISO

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0030324 "lung development" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=ISO

GO:0035469 "determination of pancreatic left/right asymmetry" evidence=ISO

GO:0045494 "photoreceptor cell maintenance" evidence=ISO

GO:0048496 "maintenance of organ identity" evidence=ISO

GO:0060027 "convergent extension involved in gastrulation" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060993 "kidney morphogenesis" evidence=ISO

GO:0071908 "determination of intestine left/right asymmetry" evidence=ISO

GO:0071909 "determination of stomach left/right asymmetry" evidence=ISO

GO:0071910 "determination of liver left/right asymmetry" evidence=ISO

GO:0072189 "ureter development" evidence=ISO

GO:0072372 "primary cilium" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|D4A1W7 Acad11 "Acyl-CoA dehydrogenase family member 11" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 53/171 (30%), Positives = 81/171 (47%)

Query:   404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
             E+  G +HP     L NLAA  +  K +  AE L    LDI  + + PD  S+++ + HL
Sbjct:  1119 ERVLGPDHPDCAQSLNNLAALCNERKQYARAEELYERALDIRRRALAPDHPSLAYTVKHL 1178

Query:   464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
              I      R  +A  L   A+ IR+ +FG     V  AL  L  + +++ +  ++ L L 
Sbjct:  1179 AILYKKTGRVDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLHSQM-KKHSEALPLY 1237

Query:   524 KRVLRIQEREFGSESEEVMLTLKK--VVSYLDKLGRKEEKFPLKKRLSNLR 572
             +R L+I E   G     V  TLK   V+SY +  G  E+   L KR   ++
Sbjct:  1238 ERALKIYEDSLGRMHPRVGETLKNLAVLSYEE--GNFEKAAELYKRAMEIK 1286

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0045494 "photoreceptor cell maintenance" evidence=IEA

GO:0048496 "maintenance of organ identity" evidence=IEA

GO:0060027 "convergent extension involved in gastrulation" evidence=IEA

GO:0060993 "kidney morphogenesis" evidence=IEA

GO:0072189 "ureter development" evidence=IEA

GO:0072372 "primary cilium" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00150121	hypothetical protein (579 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035030001	hypothetical protein (227 aa)			•						0.499
	grail3.0030022101	annotation not avaliable (116 aa)			•						0.494

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	2e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-07
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-04
pfam13374	42	pfam13374, TPR_10, Tetratricopeptide repeat	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG 259
           P L A L ++  +   L +Y++++ + ++ + +     G+       +L  +A++  ++G
Sbjct: 2   PDLAAALNNLALVLRRLGDYDEALELLEKALELAR-ELGEDHPETARALNNLARLYLALG 60

Query: 260 RAKKAVEIYHRVITILE 276
              +A+E   + + + E
Sbjct: 61  DYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L  +  + G   +A  +  + L++  +  GE+      A+ +LA    A G+ +EA+
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 350 ELYKKALRVIKD 361
           E  +KAL + + 
Sbjct: 67  EYLEKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           LA +L  +G   E  ELLE+ L +  +  G++HP     L NLA  Y    ++ EA   L
Sbjct: 11  LALVLRRLGDYDEALELLEKALELAREL-GEDHPETARALNNLARLYLALGDYDEALEYL 69

Query: 439 RICLDIMTK 447
              L +   
Sbjct: 70  EKALALREA 78

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
           HP     L NLA    R  ++ EA  LL   L++  + +G D    +  + +L      L
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALEL-ARELGEDHPETARALNNLARLYLAL 59

Query: 471 NRDKEAEKLVLEALYIRE 488
               EA + + +AL +RE
Sbjct: 60  GDYDEALEYLEKALALRE 77

Length = 78

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK 302
            L  +L  +A VL  +G   +A+E+  + + +     G +  +    L +L  L++  G 
Sbjct: 3   DLAAALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALGD 61

Query: 303 AVDAESVFSRILKIYTK 319
             +A     + L +   
Sbjct: 62  YDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
           LL +  +   +G   +A+E Y +    LEL+     A      ++L + + K GK  +A 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKA---LELDPDNADA-----YYNLAAAYYKLGKYEEAL 54

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             + + L++              A  +L  A    G  EEA+E Y+KAL +
Sbjct: 55  EDYEKALELDPDNA--------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           A+ +L +     G+ +EA+E Y+KAL +  D +              +LA   + +G+ +
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADA--------YYNLAAAYYKLGKYE 51

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
           E  E  E+ L +         P       NL  +Y +   + EA       L++
Sbjct: 52  EALEDYEKALELD--------PDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|205553 pfam13374, TPR_10, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD 494
           + +L   L    R +EAE+L+ EAL IR    G D
Sbjct: 5   LNNLARALRAQGRYEEAEELLEEALAIRRRVLGPD 39

Length = 42

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
           +  A+ +LA      G+ +EA+EL +KAL + +              +  +LA L   +G
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELAR--ELGEDHPETARALN-NLARLYLALG 60

Query: 388 RGQEGRELLEECL 400
              E  E LE+ L
Sbjct: 61  DYDEALEYLEKAL 73

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK04841	903	transcriptional regulator MalT; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.91
PLN03218	1060	maturation of RBCL 1; Provisional	99.9
PLN03218	1060	maturation of RBCL 1; Provisional	99.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
KOG1126	638	consensus DNA-binding cell division cycle control	99.9
KOG2003	840	consensus TPR repeat-containing protein [General f	99.89
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.89
KOG1126	638	consensus DNA-binding cell division cycle control	99.89
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.89
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.87
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
PLN03077	857	Protein ECB2; Provisional	99.86
KOG2003	840	consensus TPR repeat-containing protein [General f	99.85
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.84
PLN03077	857	Protein ECB2; Provisional	99.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.82
KOG2076	895	consensus RNA polymerase III transcription factor	99.82
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK04841	903	transcriptional regulator MalT; Provisional	99.8
KOG1129	478	consensus TPR repeat-containing protein [General f	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.77
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.77
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.77
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
KOG1129	478	consensus TPR repeat-containing protein [General f	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.74
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.74
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.74
PRK12370	553	invasion protein regulator; Provisional	99.74
PRK12370	553	invasion protein regulator; Provisional	99.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.73
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.73
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	99.72
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.72
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
PRK11189	296	lipoprotein NlpI; Provisional	99.7
PRK11189	296	lipoprotein NlpI; Provisional	99.7
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.69
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.68
KOG1125	579	consensus TPR repeat-containing protein [General f	99.67
KOG1125	579	consensus TPR repeat-containing protein [General f	99.67
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.64
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.63
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.62
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.61
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.6
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.58
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.57
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.57
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.56
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.54
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.52
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.52
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.49
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.47
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.44
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.43
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.41
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.4
PLN02789	320	farnesyltranstransferase	99.4
PLN02789	320	farnesyltranstransferase	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.34
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.32
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.25
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.23
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.2
PRK15359	144	type III secretion system chaperone protein SscB;	99.2
PRK15359	144	type III secretion system chaperone protein SscB;	99.18
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	99.15
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.14
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.14
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.13
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.11
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.11
KOG2300	629	consensus Uncharacterized conserved protein [Funct	99.11
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.08
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.05
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.0
KOG1585	308	consensus Protein required for fusion of vesicles	98.99
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.99
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.98
KOG1585	308	consensus Protein required for fusion of vesicles	98.97
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.95
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.94
KOG0553	304	consensus TPR repeat-containing protein [General f	98.93
KOG0553	304	consensus TPR repeat-containing protein [General f	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.93
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.87
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.85
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.85
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.82
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.77
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.7
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.69
PF12688	120	TPR_5: Tetratrico peptide repeat	98.69
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.69
PF12688	120	TPR_5: Tetratrico peptide repeat	98.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.66
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.63
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.6
PRK10803	263	tol-pal system protein YbgF; Provisional	98.59
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.57
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.57
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.56
KOG1586	288	consensus Protein required for fusion of vesicles	98.56
PRK10803	263	tol-pal system protein YbgF; Provisional	98.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.55
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.53
KOG2471	696	consensus TPR repeat-containing protein [General f	98.53
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.49
KOG4555	175	consensus TPR repeat-containing protein [Function	98.49
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.48
KOG1586	288	consensus Protein required for fusion of vesicles	98.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.48
KOG4555	175	consensus TPR repeat-containing protein [Function	98.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.43
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.37
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.37
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.35
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.34
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.33
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.31
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.31
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.29
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.28
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.25
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.24
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.24
PF13512	142	TPR_18: Tetratricopeptide repeat	98.23
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.22
PRK15331	165	chaperone protein SicA; Provisional	98.22
PF13512	142	TPR_18: Tetratricopeptide repeat	98.22
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.19
PRK15331	165	chaperone protein SicA; Provisional	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
COG5159	421	RPN6 26S proteasome regulatory complex component [	98.14
PRK11906	458	transcriptional regulator; Provisional	98.06
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.05
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	98.05
KOG2471	696	consensus TPR repeat-containing protein [General f	98.05
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.02
PRK11906	458	transcriptional regulator; Provisional	97.99
KOG4234	271	consensus TPR repeat-containing protein [General f	97.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.97
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.96
KOG4234	271	consensus TPR repeat-containing protein [General f	97.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.94
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.93
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.92
PF13371	73	TPR_9: Tetratricopeptide repeat	97.92
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.9
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.9
PF13371	73	TPR_9: Tetratricopeptide repeat	97.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.81
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.76
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.76
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.73
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.7
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.63
COG5159	421	RPN6 26S proteasome regulatory complex component [	97.62
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.59
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.58
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.55
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.55
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.54
KOG1463	411	consensus 26S proteasome regulatory complex, subun	97.53
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.51
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.48
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.45
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.41
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.41
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.37
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.36
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.29
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.19
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.14
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.13
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.13
PF13428	44	TPR_14: Tetratricopeptide repeat	97.09
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.05
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.05
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.03
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.98
PF13428	44	TPR_14: Tetratricopeptide repeat	96.97
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.91
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.91
PF13431	34	TPR_17: Tetratricopeptide repeat	96.88
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.8
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.76
PF13431	34	TPR_17: Tetratricopeptide repeat	96.74
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.6
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.59
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.55
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.52
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.51
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.43
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.33
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.19
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.08
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	95.83
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.62
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.44
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.24
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.21
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.15
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.12
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.11
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.07
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.93
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.81
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.75
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.62
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	94.59
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	94.54
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.52
KOG4322	482	consensus Anaphase-promoting complex (APC), subuni	94.47
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.45
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.35
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.14
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.1
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.06
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.04
PRK14707	2710	hypothetical protein; Provisional	93.97
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.9
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.89
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	93.81
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	93.75
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.64
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	93.36
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.31
KOG3364	149	consensus Membrane protein involved in organellar	93.26
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.25
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	93.23
KOG0687	393	consensus 26S proteasome regulatory complex, subun	93.22
PRK14707	2710	hypothetical protein; Provisional	93.17
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.13
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.83
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.67
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.61
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	92.53
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.45
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.44
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	92.42
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.41
KOG0687	393	consensus 26S proteasome regulatory complex, subun	92.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.14
PF12854	34	PPR_1: PPR repeat	92.14
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.29
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	91.18
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.18
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.02
KOG1258	577	consensus mRNA processing protein [RNA processing	91.02
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	91.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.81
KOG2908	380	consensus 26S proteasome regulatory complex, subun	90.79
PRK10941	269	hypothetical protein; Provisional	90.67
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	90.52
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.48
COG5187	412	RPN7 26S proteasome regulatory complex component,	90.37
KOG4521	1480	consensus Nuclear pore complex, Nup160 component [	90.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.86
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	89.63
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.48
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.32
KOG4014	248	consensus Uncharacterized conserved protein (conta	89.24
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	89.17
KOG0508	615	consensus Ankyrin repeat protein [General function	88.72
PF12854	34	PPR_1: PPR repeat	88.69
KOG1258	577	consensus mRNA processing protein [RNA processing	88.64
PF13041	50	PPR_2: PPR repeat family	88.6
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	88.56
PRK10941	269	hypothetical protein; Provisional	88.5
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	88.24
PF13041	50	PPR_2: PPR repeat family	88.04
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.69
PF08626	1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	87.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	87.32
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.3
COG3947	361	Response regulator containing CheY-like receiver a	87.07
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.78
COG3947	361	Response regulator containing CheY-like receiver a	86.76
COG5187	412	RPN7 26S proteasome regulatory complex component,	86.76
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.93
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	85.93
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.9
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.88
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.47
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	85.46
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.44
KOG2908	380	consensus 26S proteasome regulatory complex, subun	85.2
KOG0508	615	consensus Ankyrin repeat protein [General function	85.03
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	84.96
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	84.89
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	83.93
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	83.35
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	83.1
KOG2581	493	consensus 26S proteasome regulatory complex, subun	82.97
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	82.72
PF13812	34	PPR_3: Pentatricopeptide repeat domain	82.29
KOG3024	312	consensus Uncharacterized conserved protein [Funct	82.08
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	80.61
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	80.38

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-42  Score=313.20  Aligned_cols=377  Identities=18%  Similarity=0.206  Sum_probs=347.9

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      .+.+-..+..+-..|++++|+.+|+.++++          .|+..+++.++|.++...|+.+.|...|..++.+.     
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel----------~p~fida~inla~al~~~~~~~~a~~~~~~alqln-----  180 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIEL----------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-----  180 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhc----------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-----
Confidence            344667899999999999999999999988          89999999999999999999999999999998875     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                        |....+...+|.++...|+..+|..+|.+++..        .|..+.+|.+||.++..+|+...|+.+|++|+.+   
T Consensus       181 --P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---  247 (966)
T KOG4626|consen  181 --PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---  247 (966)
T ss_pred             --cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---
Confidence              777778899999999999999999999999985        3456889999999999999999999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           +|....+|.+||.+|...+.+++|+..|.+++.+        .|..+.++.++|.+|..+|..+-|+..|+++++
T Consensus       248 -----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~  314 (966)
T KOG4626|consen  248 -----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE  314 (966)
T ss_pred             -----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHh
Confidence                 7888999999999999999999999999999976        678889999999999999999999999999998


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (581)
                      .          .|.+..+++++|.++...|+..+|+.+|.+++.+.        |..+.++++||.+|..+|++++|..+
T Consensus       315 ~----------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~l  376 (966)
T KOG4626|consen  315 L----------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRL  376 (966)
T ss_pred             c----------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHH
Confidence            6          33446678999999999999999999999999884        55667899999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChH
Q 008016          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDT  517 (581)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  517 (581)
                      |+++++.        .|..+.+..+||.+|.++|++++|+..|++++.+.        |..++++.++|..|..+|+.. 
T Consensus       377 y~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~-  439 (966)
T KOG4626|consen  377 YLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVS-  439 (966)
T ss_pred             HHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHH-
Confidence            9999996        57888899999999999999999999999999865        888999999999999999999 


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          518 KLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       518 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      .|+..|.+|+.+        .|..+++..+||.+|...|+..+|+..|++++++.+++.+.
T Consensus       440 ~A~q~y~rAI~~--------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA  492 (966)
T KOG4626|consen  440 AAIQCYTRAIQI--------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA  492 (966)
T ss_pred             HHHHHHHHHHhc--------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence            999999999985        58899999999999999999999999999999999887654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-38  Score=289.15  Aligned_cols=377  Identities=16%  Similarity=0.189  Sum_probs=342.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      +.++.++..+.++...|+.+.|...|.+++++          +|....+...+|..+...|+..+|...|.+++...   
T Consensus       148 ~fida~inla~al~~~~~~~~a~~~~~~alql----------nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q---  214 (966)
T KOG4626|consen  148 KFIDAYINLAAALVTQGDLELAVQCFFEALQL----------NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ---  214 (966)
T ss_pred             hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc----------CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC---
Confidence            34556889999999999999999999999988          88899999999999999999999999999987764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                          |..+.+|.++|.++..+|+...|+..|++++.+        +|....+|.+||.+|...+.++.|+..|.+|+.. 
T Consensus       215 ----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-  281 (966)
T KOG4626|consen  215 ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-  281 (966)
T ss_pred             ----CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence                677788999999999999999999999999986        4667899999999999999999999999999987 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                             .|..+.++.++|.+|..+|..+-|+..|+++++.        .|....++++||..+-..|+..+|..+|.++
T Consensus       282 -------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  282 -------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             -------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence                   6778999999999999999999999999999986        6778899999999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (581)
                      +.+.       +.+   +.+.++||.+|.++|.+++|..+|.+++++        .|..+.+.++||.+|.++|++++|+
T Consensus       347 L~l~-------p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  347 LRLC-------PNH---ADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             HHhC-------Ccc---HHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHHHH
Confidence            9973       333   556799999999999999999999999987        4778899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  515 (581)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  515 (581)
                      .+|++++.+        .|..+.++.++|.+|..+|+.+.|+..|.+++.+.        |..+++..+||.+|...|+.
T Consensus       409 ~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni  472 (966)
T KOG4626|consen  409 MCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNI  472 (966)
T ss_pred             HHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCc
Confidence            999999996        68899999999999999999999999999999854        88999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          516 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       516 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      . +|+..|+.++++        .|+..+++.+++.++.-..+|.+=-+.+++..++-.+..
T Consensus       473 ~-~AI~sY~~aLkl--------kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql  524 (966)
T KOG4626|consen  473 P-EAIQSYRTALKL--------KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQL  524 (966)
T ss_pred             H-HHHHHHHHHHcc--------CCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            9 999999999985        355667888999888888888887777777777765544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=8.1e-33  Score=259.49  Aligned_cols=331  Identities=22%  Similarity=0.284  Sum_probs=305.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 008016          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (581)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (581)
                      +.+.....+.....+..+..+..+|....+...++..|..+|++++|+..+++++++..+..|.+++........+|.+|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y  251 (508)
T KOG1840|consen  172 EEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVY  251 (508)
T ss_pred             cccccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHH
Confidence            33355566666666666667788888889999999999999999999999999999999988989999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHH
Q 008016          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI  377 (581)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  377 (581)
                      ..++++.+|+.+|++|+.+.+..+|+++|.++.++.+||.+|...|++++|..++++++++.++.  .+..++.+...+.
T Consensus       252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~l~  329 (508)
T KOG1840|consen  252 RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQLS  329 (508)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999984  6778888899999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (581)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (581)
                      +++.++..++++++|..++++++++....++.+++.++..+.+||.+|..+|++++|.+++++++.+.++..+..++.+.
T Consensus       330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~  409 (508)
T KOG1840|consen  330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG  409 (508)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888889999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE  537 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~  537 (581)
                      ..+..||..|.+.+++.+|...|.++..+. ..+|+++|++...+.+|+.+|..+|+++ +|+++.++++...+...+..
T Consensus       410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e-~a~~~~~~~~~~~~~~~~~~  487 (508)
T KOG1840|consen  410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYE-AAEELEEKVLNAREQRLGTA  487 (508)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999 8999999999999999999999999999 99999999999999888887


Q ss_pred             CHHHHHHHHHHHHHH
Q 008016          538 SEEVMLTLKKVVSYL  552 (581)
Q Consensus       538 ~~~~~~~~~~la~~~  552 (581)
                      ++.....-..++...
T Consensus       488 ~~~~~~~~~~~~~~~  502 (508)
T KOG1840|consen  488 SPTVEDEKLRLADLS  502 (508)
T ss_pred             CcchhHHHHhhhHHH
Confidence            777665554444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=100.00  E-value=3.7e-32  Score=255.09  Aligned_cols=319  Identities=28%  Similarity=0.374  Sum_probs=296.5

Q ss_pred             HHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 008016          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV  265 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  265 (581)
                      ..........+...|....+...++..|..+|+|++|+..+++++++..+..+.+++........+|.+|...+++.+|+
T Consensus       182 ~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv  261 (508)
T KOG1840|consen  182 KGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV  261 (508)
T ss_pred             HHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH
Confidence            33333344567788988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                      .+|++|+.+.+..+|.++|.++.++.+||.+|...|++++|..++++|+++.++..+..++.+...+.+++.++...+++
T Consensus       262 ~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~  341 (508)
T KOG1840|consen  262 NLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY  341 (508)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (581)
                      ++|..++++++++..+.  .+++++.+..++.+||.+|..+|++++|++++++++.+.++..+..++.....++++|..|
T Consensus       342 Eea~~l~q~al~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~  419 (508)
T KOG1840|consen  342 EEAKKLLQKALKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY  419 (508)
T ss_pred             hHHHHHHHHHHHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence            99999999999999864  7888889999999999999999999999999999999999998888999999999999999


Q ss_pred             HHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 008016          426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL  505 (581)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  505 (581)
                      .+.+++.+|..+|.++..+. +..|+++|++...+.+|+.+|..+|++++|+++...++...+...|..++.....-..+
T Consensus       420 ~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (508)
T KOG1840|consen  420 EELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRL  498 (508)
T ss_pred             HHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhh
Confidence            99999999999999999999 88999999999999999999999999999999999999999998888887665444443


Q ss_pred             HH
Q 008016          506 VS  507 (581)
Q Consensus       506 a~  507 (581)
                      +.
T Consensus       499 ~~  500 (508)
T KOG1840|consen  499 AD  500 (508)
T ss_pred             hH
Confidence            33

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.1e-30  Score=265.19  Aligned_cols=393  Identities=16%  Similarity=0.127  Sum_probs=306.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...+...|..+++.|+|++|+..|+++++.          .|+ +..+.++|.+|..+|++++|+..+++++.+.     
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-----  190 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELD-----  190 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-----
Confidence            445889999999999999999999999976          343 5678999999999999999999999988764     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----------H------------HHcCCCC---H---------
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------E------------SRYGKTS---I---------  242 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~------------~~~~~~~---~---------  242 (581)
                        |....++..+|.+|...|++++|+..+..+....           .            ......+   +         
T Consensus       191 --p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~  268 (615)
T TIGR00990       191 --PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL  268 (615)
T ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence              5666789999999999999999998776553210           0            0000000   0         


Q ss_pred             --------------------HHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016          243 --------------------LLVTSLLGMAKVL---GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (581)
Q Consensus       243 --------------------~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (581)
                                          .....+..++..+   ...+++++|+..|+++++..     ...|....++..+|.++..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~  343 (615)
T TIGR00990       269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCL  343 (615)
T ss_pred             HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHH
Confidence                                0001111222111   12357888888888888752     2356778899999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 008016          300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (581)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (581)
                      +|++++|+..+++++++        +|....++..+|.++...|++++|+..++++++.       .|+.   ..++..+
T Consensus       344 ~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~p~~---~~~~~~l  405 (615)
T TIGR00990       344 KGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-------NSED---PDIYYHR  405 (615)
T ss_pred             cCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHH
Confidence            99999999999999976        4666788999999999999999999999999886       3333   3467889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (581)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (581)
                      |.++...|++++|+..|++++.+        .|.....+..+|.++...|++++|+..+++++..        .|....+
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~  469 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--------FPEAPDV  469 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHH
Confidence            99999999999999999999886        3455567889999999999999999999999874        4666678


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016          460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  539 (581)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~  539 (581)
                      +..+|.++...|++++|+..|++++.+.... .+.+......+...+..+...|+++ +|+.++++++++        .|
T Consensus       470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~-eA~~~~~kAl~l--------~p  539 (615)
T TIGR00990       470 YNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFI-EAENLCEKALII--------DP  539 (615)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHhc--------CC
Confidence            8999999999999999999999999865221 0111122222333334445578998 999999999874        24


Q ss_pred             HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       540 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      +...++..+|.++..+|++++|+.+|++++++.+...+
T Consensus       540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e  577 (615)
T TIGR00990       540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE  577 (615)
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence            45567889999999999999999999999999875444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.97  E-value=6.7e-27  Score=237.51  Aligned_cols=354  Identities=16%  Similarity=0.118  Sum_probs=273.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV------  192 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------  192 (581)
                      ..+..++.++...|++++|+..++++++.          .|....++..+|.+|..+|++++|+..+..+....      
T Consensus       161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l----------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~  230 (615)
T TIGR00990       161 VYYSNRAACHNALGDWEKVVEDTTAALEL----------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ  230 (615)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHc----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH
Confidence            34778899999999999999999999987          78889999999999999999999988765443211      


Q ss_pred             ---------------------hhcCCCcch-----------------------------HHHHHHHHHHHH---HhccCH
Q 008016          193 ---------------------DSLKDDEPL-----------------------------LDAILLHMGSMY---STLENY  219 (581)
Q Consensus       193 ---------------------~~~~~~~~~-----------------------------~~~~~~~l~~~~---~~~g~~  219 (581)
                                           ...+...+.                             ....+..++..+   ...+++
T Consensus       231 ~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y  310 (615)
T TIGR00990       231 SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESY  310 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhH
Confidence                                 000000000                             000111122111   123578


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (581)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (581)
                      ++|+..|++++...     ...+....++..+|.++...|++++|+..+++++++        .|....++..+|.++..
T Consensus       311 ~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~  377 (615)
T TIGR00990       311 EEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLE  377 (615)
T ss_pred             HHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHH
Confidence            88888888887642     234677888999999999999999999999999987        56677889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 008016          300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (581)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (581)
                      .|++++|+..|+++++.        +|....++..+|.++...|++++|+..|++++++       .|+.   ...+.++
T Consensus       378 ~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-------~P~~---~~~~~~l  439 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-------DPDF---IFSHIQL  439 (615)
T ss_pred             CCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CccC---HHHHHHH
Confidence            99999999999999876        3455678999999999999999999999999986       3333   3456889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (581)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (581)
                      |.++...|++++|+..+++++...        |....++..+|.++...|++++|+..|++++.+.... .+........
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l  510 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPL  510 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHH
Confidence            999999999999999999998752        4455678899999999999999999999999863221 0111112222


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008016          460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  531 (581)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~  531 (581)
                      +...+..+...|++++|..++++++.+.        |+...++..+|.++...|+++ +|+.+|++++++.+
T Consensus       511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--------p~~~~a~~~la~~~~~~g~~~-eAi~~~e~A~~l~~  573 (615)
T TIGR00990       511 INKALALFQWKQDFIEAENLCEKALIID--------PECDIAVATMAQLLLQQGDVD-EALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHhc
Confidence            2223334445799999999999998752        344467889999999999999 99999999998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=5.7e-27  Score=253.31  Aligned_cols=386  Identities=14%  Similarity=0.089  Sum_probs=292.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch--
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL--  201 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--  201 (581)
                      .+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..|+++++...........  
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~----------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRA----------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence            467788999999999999999987          77778999999999999999999999999988765221100000  


Q ss_pred             -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          202 -----LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       202 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                           .......+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..|++++++..
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p  416 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP  416 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence                 11123456888999999999999999999862        22356788999999999999999999999997621


Q ss_pred             HhcCCCChhh---------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          277 LNRGTESADL---------------------------------------VLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       277 ~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                           +++..                                       ...+..+|.++...|++++|+..|+++++. 
T Consensus       417 -----~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-  490 (1157)
T PRK11447        417 -----GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-  490 (1157)
T ss_pred             -----CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence                 11110                                       112334677778889999999999999876 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                             .|....++..+|.+|...|++++|+..++++++.       .|+++.   .+..++..+...|++++|+..++
T Consensus       491 -------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-------~P~~~~---~~~a~al~l~~~~~~~~Al~~l~  553 (1157)
T PRK11447        491 -------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-------KPNDPE---QVYAYGLYLSGSDRDRAALAHLN  553 (1157)
T ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHH---HHHHHHHHHHhCCCHHHHHHHHH
Confidence                   3455667889999999999999999999998875       233322   23455666666677777766655


Q ss_pred             HHHHH---------------------H------------HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          398 ECLLI---------------------T------------EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       398 ~al~~---------------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                      ++...                     .            ...+ ..+|.....+..+|.++...|++++|+..|+++++.
T Consensus       554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l-~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~  632 (1157)
T PRK11447        554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL-RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR  632 (1157)
T ss_pred             hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH-HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            42100                     0            0000 012334456788999999999999999999999984


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 008016          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  524 (581)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~  524 (581)
                              .|....++..++.++...|++++|++.++++++.        .|+...++..+|.++...|+++ +|+.+++
T Consensus       633 --------~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~~~-eA~~~~~  695 (1157)
T PRK11447        633 --------EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--------ANDSLNTQRRVALAWAALGDTA-AAQRTFN  695 (1157)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCCHH-HHHHHHH
Confidence                    5666788999999999999999999999987653        2334466788999999999999 9999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016          525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                      +++......  +.......++..+|.++...|++++|+..|++++.
T Consensus       696 ~al~~~~~~--~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        696 RLIPQAKSQ--PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHhhhCccC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            998753211  11123456677889999999999999999999974

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=1e-26  Score=251.96  Aligned_cols=374  Identities=18%  Similarity=0.136  Sum_probs=201.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..+...+..+...|++++|+..|+++++.          .|....++..++.++...|++++|...++++....      
T Consensus       500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------  563 (899)
T TIGR02917       500 PAAANLARIDIQEGNPDDAIQRFEKVLTI----------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN------  563 (899)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence            34667777788888888888888888765          55566677777777777788888877777765542      


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                       |.....+..++..+...|++++|+..+++++...        |....++..+|.++...|++++|+..++++++.    
T Consensus       564 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  630 (899)
T TIGR02917       564 -PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----  630 (899)
T ss_pred             -ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence             2223345566667777777777777776665421        112345666677777777777777777666654    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                          .|.....+..+|.++...|++++|...++++++.        .|....++..++.++...|++++|..+++.+...
T Consensus       631 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  698 (899)
T TIGR02917       631 ----QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ  698 (899)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2333455666666666666666666666666553        2222334444455555555555555544444332


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-------------------------cCCCChH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-------------------------KGKEHPS  413 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------~~~~~~~  413 (581)
                             .+..   ...+..+|.++...|++++|+..|++++......                         .-...|.
T Consensus       699 -------~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       699 -------HPKA---ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             -------CcCC---hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence                   1111   1122334444444444444444444444331000                         0000122


Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      ...++..+|.++...|++++|+..|+++++.        .|....++..++.++...|+ .+|+.++++++...     +
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-----~  834 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-----P  834 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-----C
Confidence            2334445555555555555555555555442        23333444555555555555 44555555554432     2


Q ss_pred             CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016          494 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  569 (581)
Q Consensus       494 ~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  569 (581)
                      +++   ..+..+|.++...|+++ +|+.+++++++..        |....++..++.++.+.|++++|++++++++
T Consensus       835 ~~~---~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       835 NIP---AILDTLGWLLVEKGEAD-RALPLLRKAVNIA--------PEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             CCc---HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            222   33444555555555555 5555555555421        1223445555555555555555555555543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=2.2e-26  Score=249.41  Aligned_cols=379  Identities=17%  Similarity=0.140  Sum_probs=291.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...+...+..+...|++++|+..|+++++.          .|....++..++.++...|++++|...++++....     
T Consensus       465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----  529 (899)
T TIGR02917       465 ASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-----  529 (899)
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence            345778899999999999999999999876          66777889999999999999999999999987653     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                        |....++..++.++...|++++|+.++++++...        |.....+..++..+...|++++|+..++++++.   
T Consensus       530 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  596 (899)
T TIGR02917       530 --PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--------PQEIEPALALAQYYLGKGQLKKALAILNEAADA---  596 (899)
T ss_pred             --cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc---
Confidence              3445678889999999999999999999998752        233566788999999999999999999998765   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           .|.....+..+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|...++++++
T Consensus       597 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       597 -----APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                 3445678999999999999999999999999875        344456788999999999999999999999987


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (581)
                      .       .|+.   ...+..++.++...|++++|+.+++.+....        |.....+..+|.++...|++++|+..
T Consensus       664 ~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~  725 (899)
T TIGR02917       664 L-------KPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--------PKAALGFELEGDLYLRQKDYPAAIQA  725 (899)
T ss_pred             c-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence            5       2333   3456789999999999999999998876542        22334555667777777777777777


Q ss_pred             HHHHHHHH--------------------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016          438 LRICLDIM--------------------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (581)
Q Consensus       438 ~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (581)
                      |++++...                          .+.. ...|....++..+|.++...|++++|...|+++++..    
T Consensus       726 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----  800 (899)
T TIGR02917       726 YRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWL-KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA----  800 (899)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----
Confidence            76665421                          0000 0123444566666777777777777777777766532    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          492 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       492 ~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                          |....++..++.++...|+ . +|+.++++++++.        |+....+..+|.++...|++++|..+|++++++
T Consensus       801 ----p~~~~~~~~l~~~~~~~~~-~-~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       801 ----PDNAVVLNNLAWLYLELKD-P-RALEYAEKALKLA--------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             ----CCCHHHHHHHHHHHHhcCc-H-HHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                2333566677777777777 5 6777777776632        233445677888999999999999999999987


Q ss_pred             HHH
Q 008016          572 RMK  574 (581)
Q Consensus       572 ~~~  574 (581)
                      .+.
T Consensus       867 ~~~  869 (899)
T TIGR02917       867 APE  869 (899)
T ss_pred             CCC
Confidence            654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=9.7e-26  Score=227.80  Aligned_cols=368  Identities=11%  Similarity=0.066  Sum_probs=294.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..++..+......|++++|..+++..+..          .|....++..+|.+....|++++|+..++++....      
T Consensus        43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~------  106 (656)
T PRK15174         43 QNIILFAIACLRKDETDVGLTLLSDRVLT----------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN------  106 (656)
T ss_pred             cCHHHHHHHHHhcCCcchhHHHhHHHHHh----------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC------
Confidence            34777888999999999999999999887          88889999999999999999999999999988765      


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                       |....++..+|.++...|++++|+..+++++.+.        |....++..++.++...|++++|+..+++++..    
T Consensus       107 -P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----  173 (656)
T PRK15174        107 -VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--------SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----  173 (656)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----
Confidence             4445678999999999999999999999999862        334667888999999999999999999987765    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                          .|.....+..++ .+...|++++|+..+++++...       .+........++.++...|++++|+..+++++..
T Consensus       174 ----~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~  241 (656)
T PRK15174        174 ----VPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-------ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR  241 (656)
T ss_pred             ----CCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                223333444443 4788999999999999887641       1122233456788899999999999999999975


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQE----GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (581)
                             .|+.   ...+.++|.++...|++++    |+..+++++..        .|....++..+|.++...|++++|
T Consensus       242 -------~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        242 -------GLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKA  303 (656)
T ss_pred             -------CCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence                   3333   4566889999999999986    78999998876        355667899999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC
Q 008016          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE  514 (581)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  514 (581)
                      +..+++++..        +|....++..+|.++...|++++|+..|++++...        |........++.++...|+
T Consensus       304 ~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~  367 (656)
T PRK15174        304 IPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGK  367 (656)
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCC
Confidence            9999999984        45666778899999999999999999999988742        3333456667899999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHH
Q 008016          515 DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  565 (581)
Q Consensus       515 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  565 (581)
                      .+ +|+..|+++++...+..   .+....+...+...+...+...+...+.
T Consensus       368 ~d-eA~~~l~~al~~~P~~~---~~~~~ea~~~~~~~~~~~~~~~~~~~W~  414 (656)
T PRK15174        368 TS-EAESVFEHYIQARASHL---PQSFEEGLLALDGQISAVNLPPERLDWA  414 (656)
T ss_pred             HH-HHHHHHHHHHHhChhhc---hhhHHHHHHHHHHHHHhcCCccchhhHH
Confidence            99 99999999998755432   2333456666666666666665443333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.9e-25  Score=241.46  Aligned_cols=398  Identities=13%  Similarity=0.076  Sum_probs=288.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHH----------HHH-----------------HhcCCCChhHHH---------
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAV----------KEQ-----------------INAGNKGIEEVA---------  163 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~----------~~~-----------------~~~~~~~~~~~~---------  163 (581)
                      .....+..+...|++++|+..+++++...          ...                 ....+..+....         
T Consensus       183 ~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~  262 (1157)
T PRK11447        183 LRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQ  262 (1157)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            35677888899999999999999875321          000                 000011111110         


Q ss_pred             --------HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016          164 --------ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (581)
Q Consensus       164 --------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (581)
                              ....+|.++...|++++|+..+++++...       |....++..+|.++...|++++|+.+|+++++....
T Consensus       263 ~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~  335 (1157)
T PRK11447        263 KQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH  335 (1157)
T ss_pred             HhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence                    11234788899999999999999988764       444567899999999999999999999999986422


Q ss_pred             HcCCCCH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 008016          236 RYGKTSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV  309 (581)
Q Consensus       236 ~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (581)
                      .......      ........+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+..
T Consensus       336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~  407 (1157)
T PRK11447        336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERY  407 (1157)
T ss_pred             ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            1000000      01123345688999999999999999999997        455567889999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCchH---------------------------------------HHHHHHHHHHHHHCCCHHHHHH
Q 008016          310 FSRILKIYTKVYGENDGRV---------------------------------------GMAMCSLAHAKCANGNAEEAVE  350 (581)
Q Consensus       310 ~~~al~~~~~~~~~~~~~~---------------------------------------~~~~~~la~~~~~~g~~~~A~~  350 (581)
                      |+++++..     +++...                                       ...+..+|.++...|++++|+.
T Consensus       408 y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~  482 (1157)
T PRK11447        408 YQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAE  482 (1157)
T ss_pred             HHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHH
Confidence            99998752     111110                                       1123456777888999999999


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (581)
                      .|+++++.       .|+.+   .++..+|.+|...|++++|+..+++++...        |.....+..++..+...|+
T Consensus       483 ~~~~Al~~-------~P~~~---~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--------P~~~~~~~a~al~l~~~~~  544 (1157)
T PRK11447        483 LQRQRLAL-------DPGSV---WLTYRLAQDLRQAGQRSQADALMRRLAQQK--------PNDPEQVYAYGLYLSGSDR  544 (1157)
T ss_pred             HHHHHHHh-------CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhCCC
Confidence            99999986       34443   356889999999999999999999988642        2223344455555666666


Q ss_pred             HHHHHHHHHHHHHH---------------------H------------HHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016          431 FVEAERLLRICLDI---------------------M------------TKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (581)
Q Consensus       431 ~~~A~~~~~~al~~---------------------~------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (581)
                      +++|+..++++...                     .            ...+. .+|.....+..+|.++...|++++|+
T Consensus       545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~  623 (1157)
T PRK11447        545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAAR  623 (1157)
T ss_pred             HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            66666655432100                     0            00000 13444557788999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      ..|+++++..        |....++..++.++...|+++ +|+..++++++.        .|+...++..+|.++...|+
T Consensus       624 ~~y~~al~~~--------P~~~~a~~~la~~~~~~g~~~-eA~~~l~~ll~~--------~p~~~~~~~~la~~~~~~g~  686 (1157)
T PRK11447        624 AAYQRVLTRE--------PGNADARLGLIEVDIAQGDLA-AARAQLAKLPAT--------ANDSLNTQRRVALAWAALGD  686 (1157)
T ss_pred             HHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHhcc--------CCCChHHHHHHHHHHHhCCC
Confidence            9999998853        444578999999999999999 999999987753        34445677889999999999


Q ss_pred             hhhhHHHHHHHHHHHH
Q 008016          558 KEEKFPLKKRLSNLRM  573 (581)
Q Consensus       558 ~~~A~~~~~~a~~l~~  573 (581)
                      +++|.++|++++...+
T Consensus       687 ~~eA~~~~~~al~~~~  702 (1157)
T PRK11447        687 TAAAQRTFNRLIPQAK  702 (1157)
T ss_pred             HHHHHHHHHHHhhhCc
Confidence            9999999999988653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.96  E-value=6.5e-26  Score=229.05  Aligned_cols=366  Identities=12%  Similarity=0.023  Sum_probs=287.8

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      .+..+++.-.-++.+.-+..+.       ..+...-+...+......|++++|...++..+...       |....++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-------p~~~~~l~~   81 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRD-------SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-------KNGRDLLRR   81 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhh-------hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-------CCchhHHHH
Confidence            3444444444444444433222       22333445566777889999999999999877654       445567888


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      +|.+....|++++|+..+++++...        |....++..+|.++...|++++|+..+++++.+        .|....
T Consensus        82 l~~~~l~~g~~~~A~~~l~~~l~~~--------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~  145 (656)
T PRK15174         82 WVISPLASSQPDAVLQVVNKLLAVN--------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQ  145 (656)
T ss_pred             HhhhHhhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHH
Confidence            9999999999999999999998862        333667899999999999999999999999987        566678


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      ++..++.++...|++++|...+++++...     +++   ...+..++ .+...|++++|+..+++++...      ..+
T Consensus       146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~---~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~------~~~  210 (656)
T PRK15174        146 IFALHLRTLVLMDKELQAISLARTQAQEV-----PPR---GDMIATCL-SFLNKSRLPEDHDLARALLPFF------ALE  210 (656)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCC---HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC------CCc
Confidence            89999999999999999999999876641     222   23344443 4788999999999999887641      111


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHH
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE----AERLLRICLDI  444 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~  444 (581)
                      ..   .....++.++...|++++|+..+++++..        +|....++..+|.++...|++++    |+..+++++++
T Consensus       211 ~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        211 RQ---ESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             ch---hHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            11   12245688899999999999999999875        24456788899999999999986    89999999884


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 008016          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLK  524 (581)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~  524 (581)
                              .|....++..+|.++...|++++|+..+++++...     |+   ...++..++.++...|+++ +|+..|+
T Consensus       280 --------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~~~G~~~-eA~~~l~  342 (656)
T PRK15174        280 --------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALRQVGQYT-AASDEFV  342 (656)
T ss_pred             --------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHH-HHHHHHH
Confidence                    56677889999999999999999999999998753     44   4467888999999999999 9999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      ++++.        +|+.......+|.++...|++++|+..|++++++.++.
T Consensus       343 ~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        343 QLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            88873        34444556667899999999999999999999987663

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.7e-24  Score=208.60  Aligned_cols=403  Identities=16%  Similarity=0.145  Sum_probs=295.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE-EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ....++..|+.+...|+|++|..+|.++++.          .++ ..-.+..+|..|...|+++.++..|+++....   
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~----------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~---  372 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA----------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL---  372 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---
Confidence            3445777888888888888888888887764          222 25566778888888888888888888776654   


Q ss_pred             CCCcchHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (581)
                          |....++..+|.+|...+    ..+.|..+..+++..        .+....+|..++.++.... ...++..|..|
T Consensus       373 ----p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d-~~~sL~~~~~A  439 (1018)
T KOG2002|consen  373 ----PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTD-PWASLDAYGNA  439 (1018)
T ss_pred             ----cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence                455556667777777665    445555555555543        2455788999999887554 44559999999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHCCCHHHHH
Q 008016          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND--GRVGMAMCSLAHAKCANGNAEEAV  349 (581)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~  349 (581)
                      +.+.......   .-+..++++|..++..|++.+|...|.+++..+......+.  .......+++|.++...++++.|.
T Consensus       440 ~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~  516 (1018)
T KOG2002|consen  440 LDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE  516 (1018)
T ss_pred             HHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence            9888775433   34678999999999999999999999999998554322222  123456789999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh------cC---------------
Q 008016          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY------KG---------------  408 (581)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~---------------  408 (581)
                      +.|...+..          +|.+..++..+|.+....+...+|..++..++..-...      +|               
T Consensus       517 e~Yk~Ilke----------hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~  586 (1018)
T KOG2002|consen  517 EMYKSILKE----------HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK  586 (1018)
T ss_pred             HHHHHHHHH----------CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence            999998875          55567777888877777888888888888877542111      11               


Q ss_pred             -------CCChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016          409 -------KEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (581)
Q Consensus       409 -------~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (581)
                             ........++..||+++.+.     .+.+.+...+.+|++++.+.+. .+|....+-+.+|.++...|++.+|
T Consensus       587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A  665 (1018)
T KOG2002|consen  587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEA  665 (1018)
T ss_pred             HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHH
Confidence                   00001223455667766542     2335556666666666555543 3577777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 008016          477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG  556 (581)
Q Consensus       477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  556 (581)
                      ...|.++.+...        +...++.++|.+|..+|++. .|+++|+.++..+-.      .+...++..||.++...|
T Consensus       666 ~dIFsqVrEa~~--------~~~dv~lNlah~~~e~~qy~-~AIqmYe~~lkkf~~------~~~~~vl~~Lara~y~~~  730 (1018)
T KOG2002|consen  666 RDIFSQVREATS--------DFEDVWLNLAHCYVEQGQYR-LAIQMYENCLKKFYK------KNRSEVLHYLARAWYEAG  730 (1018)
T ss_pred             HHHHHHHHHHHh--------hCCceeeeHHHHHHHHHHHH-HHHHHHHHHHHHhcc------cCCHHHHHHHHHHHHHhh
Confidence            999999987653        22356899999999999999 999999999986532      234577889999999999


Q ss_pred             ChhhhHHHHHHHHHHHHH
Q 008016          557 RKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       557 ~~~~A~~~~~~a~~l~~~  574 (581)
                      ++.+|.+....++.+.+.
T Consensus       731 ~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  731 KLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             hHHHHHHHHHHHHHhCCc
Confidence            999999999998877654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-23  Score=187.97  Aligned_cols=403  Identities=13%  Similarity=0.113  Sum_probs=301.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+-..|..+++.|+|++||.+|.++++.          .|+.+..+.+++-||...|++++.++...+++++.   
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~---  179 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN---  179 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC---
Confidence            44556888999999999999999999999987          66668899999999999999999999999988765   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHH------------------HHHHH-----HHHHcCC-CC---H--HHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQ------------------RVINV-----LESRYGK-TS---I--LLVT  246 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------------~al~~-----~~~~~~~-~~---~--~~~~  246 (581)
                          |....+++..+..+...|++++|+.-..                  +.++.     ....+.. ..   |  ....
T Consensus       180 ----P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~  255 (606)
T KOG0547|consen  180 ----PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIA  255 (606)
T ss_pred             ----cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence                8888999999999999999998865332                  22211     1111111 11   1  1111


Q ss_pred             HHHH--------------------HHHHH--Hhc---CCHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHHHHHHHHH
Q 008016          247 SLLG--------------------MAKVL--GSI---GRAKKAVEIYHRVITILELNRGTE-----SADLVLPLFSLGSL  296 (581)
Q Consensus       247 ~~~~--------------------la~~~--~~~---g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~  296 (581)
                      +++.                    +...+  ...   ..|.+|...+.+...........+     -...+.++...|..
T Consensus       256 syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF  335 (606)
T KOG0547|consen  256 SYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF  335 (606)
T ss_pred             HHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence            1110                    11111  111   245555555555444433222111     12346778888999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      +.-.|++..|...|+.++++        ++.....|..+|.+|....+.++-...|.++.++       +|.+   ..+|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-------dp~n---~dvY  397 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL-------DPEN---PDVY  397 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------CCCC---Cchh
Confidence            99999999999999999986        3344444888999999999999999999999987       3333   3456


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      +..|.++.-.+++++|+.-|++++.+        .|..+..+..++.+..++++++++...|+.+...        -|..
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~  461 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNC  461 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCC
Confidence            88999999999999999999999987        4777889999999999999999999999999874        4666


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT-RLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      ..++.-.|.++..++++++|.+.|..++++.....+ -+.. +..+..-|.+.. -.++.. +|++++++|+++      
T Consensus       462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~-~~v~-~~plV~Ka~l~~qwk~d~~-~a~~Ll~KA~e~------  532 (606)
T KOG0547|consen  462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL-IIVN-AAPLVHKALLVLQWKEDIN-QAENLLRKAIEL------  532 (606)
T ss_pred             chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc-cccc-chhhhhhhHhhhchhhhHH-HHHHHHHHHHcc------
Confidence            778888999999999999999999999987632110 0000 111222222221 236677 999999999884      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhhc
Q 008016          536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ  580 (581)
Q Consensus       536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~  580 (581)
                        +|..-.++..||.+...+|+.++|+++|+++..+.+...++++
T Consensus       533 --Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~  575 (606)
T KOG0547|consen  533 --DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVH  575 (606)
T ss_pred             --CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence              5777889999999999999999999999999999988887764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.94  E-value=2.1e-23  Score=215.70  Aligned_cols=390  Identities=11%  Similarity=-0.009  Sum_probs=250.5

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (581)
                      .+........|+.++|+..+.++...          .+..+.++..+|.++...|++++|+..+++++...       |.
T Consensus        19 ~d~~~ia~~~g~~~~A~~~~~~~~~~----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-------P~   81 (765)
T PRK10049         19 ADWLQIALWAGQDAEVITVYNRYRVH----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-------PQ   81 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CC
Confidence            33444445566666666665555432          34445556666666666666666666666655542       22


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      ...++..++.++...|++++|+..+++++...     ++   ... +..+|.++...|++++|+..++++++.       
T Consensus        82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-----P~---~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-------  145 (765)
T PRK10049         82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-----PD---KAN-LLALAYVYKRAGRHWDELRAMTQALPR-------  145 (765)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-------
Confidence            22334556666666666666666666665531     11   223 555566666666666666666666655       


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHH----------------------------------------------HHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFS----------------------------------------------RILK  315 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------------------------------------------~al~  315 (581)
                       .|....++..++.++...|..++|+..++                                              .+++
T Consensus       146 -~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~  224 (765)
T PRK10049        146 -APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA  224 (765)
T ss_pred             -CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence             33344444555555555555555443333                                              3332


Q ss_pred             HHHHHcCCCCchHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016          316 IYTKVYGENDGRVGMAMCS-LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (581)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (581)
                      ..... +...+....+... ++ .+...|++++|+..|+++++.       ++..+....  ..+|.+|...|++++|+.
T Consensus       225 ~~~~~-p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~-------~~~~P~~a~--~~la~~yl~~g~~e~A~~  293 (765)
T PRK10049        225 LWHDN-PDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAE-------GQIIPPWAQ--RWVASAYLKLHQPEKAQS  293 (765)
T ss_pred             hcccC-CccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhcc-------CCCCCHHHH--HHHHHHHHhcCCcHHHHH
Confidence            21100 0111223333333 34 346779999999999997764       222222222  336889999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh---c--CCCCcc--hHHHHHHHHHH
Q 008016          395 LLEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT---V--GPDDQS--ISFPMLHLGIT  466 (581)
Q Consensus       395 ~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~--~~~~~~--~~~~~~~la~~  466 (581)
                      +|++++...     +.. .........++.++...|++++|+.+++++.......   .  ....|+  ...++..++.+
T Consensus       294 ~l~~~l~~~-----p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~  368 (765)
T PRK10049        294 ILTELFYHP-----ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV  368 (765)
T ss_pred             HHHHHhhcC-----CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence            999987531     111 1112455667778899999999999999988741100   0  001122  34567789999


Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008016          467 LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  546 (581)
Q Consensus       467 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  546 (581)
                      +...|++++|++.+++++...     |++   ...+..+|.++...|+++ +|+..+++++++        .|+....+.
T Consensus       369 l~~~g~~~eA~~~l~~al~~~-----P~n---~~l~~~lA~l~~~~g~~~-~A~~~l~~al~l--------~Pd~~~l~~  431 (765)
T PRK10049        369 AKYSNDLPQAEMRARELAYNA-----PGN---QGLRIDYASVLQARGWPR-AAENELKKAEVL--------EPRNINLEV  431 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhh--------CCCChHHHH
Confidence            999999999999999998753     444   478999999999999999 999999999984        366667888


Q ss_pred             HHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          547 KVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       547 ~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      .+|.++...|++++|...++++++..++....
T Consensus       432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999999999987765544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.4e-23  Score=199.82  Aligned_cols=403  Identities=17%  Similarity=0.187  Sum_probs=298.7

Q ss_pred             HHHHHHHHHHHHHc---CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016          118 LLELFNEVKSMIMM---GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (581)
Q Consensus       118 ~~~l~~~~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (581)
                      +..++.++..-...   ..+..++.++..+...          ++.++.++..|+.-|+..|+|..+..+...+....  
T Consensus       233 v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~----------n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--  300 (1018)
T KOG2002|consen  233 VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE----------NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--  300 (1018)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh----------cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--
Confidence            34455555443333   3456666666666554          77778899999999999999999999998877764  


Q ss_pred             cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                        ...+..+..++.+|.+|..+|+|++|..+|.+++...     ++  .....+..+|.+|...|+++.|...|++++..
T Consensus       301 --~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~  371 (1018)
T KOG2002|consen  301 --ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ  371 (1018)
T ss_pred             --hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC--CccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence              4456777889999999999999999999999998752     12  24667889999999999999999999999987


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEG----KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (581)
                              .|....+...||.+|...+    ..+.|..+..++++.        .|....+|..++.++... +...++.
T Consensus       372 --------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~-d~~~sL~  434 (1018)
T KOG2002|consen  372 --------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQT-DPWASLD  434 (1018)
T ss_pred             --------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhc-ChHHHHH
Confidence                    5667788888999998876    456666677766654        366778999999988765 5555599


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHc
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRS  428 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~  428 (581)
                      +|..|+.++...  ..+   .-..+++++|..++..|++.+|...+..|+.........+.  .......+++|.++...
T Consensus       435 ~~~~A~d~L~~~--~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l  509 (1018)
T KOG2002|consen  435 AYGNALDILESK--GKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL  509 (1018)
T ss_pred             HHHHHHHHHHHc--CCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence            999999888764  222   22456799999999999999999999999988553322222  12345688999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------HcC----------
Q 008016          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI------AFG----------  492 (581)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~----------  492 (581)
                      ++++.|.+.|...+.        .+|..+.++..+|.+....++..+|..++..++.....      .+|          
T Consensus       510 ~~~~~A~e~Yk~Ilk--------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~  581 (1018)
T KOG2002|consen  510 HDTEVAEEMYKSILK--------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK  581 (1018)
T ss_pred             hhhhHHHHHHHHHHH--------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence            999999999999988        48999999999998888889999999999888765321      111          


Q ss_pred             C------------CChhHHHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016          493 K------------DSLPVGEALDCLVSIQTRL-----GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  555 (581)
Q Consensus       493 ~------------~~~~~~~~~~~la~~~~~~-----g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  555 (581)
                      +            +....+.++..||+++...     .+.+ ++...+.+|++++.+++. .+|.++.+-+.+|.++...
T Consensus       582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e-k~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~k  659 (1018)
T KOG2002|consen  582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE-KEKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEK  659 (1018)
T ss_pred             ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH-HHHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhc
Confidence            0            0001224456677766543     2234 677778888888777654 3455556666666666666


Q ss_pred             CChhhhHHHHHHHHHHHH
Q 008016          556 GRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       556 g~~~~A~~~~~~a~~l~~  573 (581)
                      |++.+|+.+|.++.+-..
T Consensus       660 g~~~~A~dIFsqVrEa~~  677 (1018)
T KOG2002|consen  660 GRFSEARDIFSQVREATS  677 (1018)
T ss_pred             cCchHHHHHHHHHHHHHh
Confidence            666666666666655443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=2.4e-21  Score=187.59  Aligned_cols=312  Identities=16%  Similarity=0.111  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ..+...+..+..+...|++++|+..|+++++.          .|....++..+|.++...|++++|+..++.+....   
T Consensus        33 ~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---   99 (389)
T PRK11788         33 NRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV----------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---   99 (389)
T ss_pred             hhccHHHHHHHHHHhcCChHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---
Confidence            34444666788888999999999999999976          67778899999999999999999999999876531   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      .........++..+|.+|...|++++|+..|+++++.        .+....++..++.++...|++++|+..++++++..
T Consensus       100 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (389)
T PRK11788        100 DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG  171 (389)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence            1112233457889999999999999999999998863        23346778899999999999999999999987752


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      ..   .........+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+..++++
T Consensus       172 ~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  240 (389)
T PRK11788        172 GD---SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLALAQGDYAAAIEALERV  240 (389)
T ss_pred             CC---cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            11   111223456778999999999999999999999875        2345567888999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (581)
                      +..       .+  ......+..++.+|...|++++|+..+++++...     ++   . ..+..++.++...|++++|+
T Consensus       241 ~~~-------~p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~---~-~~~~~la~~~~~~g~~~~A~  302 (389)
T PRK11788        241 EEQ-------DP--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PG---A-DLLLALAQLLEEQEGPEAAQ  302 (389)
T ss_pred             HHH-------Ch--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---c-hHHHHHHHHHHHhCCHHHHH
Confidence            875       12  2223456789999999999999999999988762     22   2 23378999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q 008016          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYI  486 (581)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~  486 (581)
                      ..++++++.        .|+.... ..+...+..   .|+..+|+..+++.++.
T Consensus       303 ~~l~~~l~~--------~P~~~~~-~~l~~~~~~~~~~g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        303 ALLREQLRR--------HPSLRGF-HRLLDYHLAEAEEGRAKESLLLLRDLVGE  347 (389)
T ss_pred             HHHHHHHHh--------CcCHHHH-HHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence            999999884        3554433 333333332   56899999999988763

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=4.8e-21  Score=185.46  Aligned_cols=309  Identities=17%  Similarity=0.160  Sum_probs=241.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      .+..|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++...    ......
T Consensus        38 ~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~  105 (389)
T PRK11788         38 DYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQ  105 (389)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHH
Confidence            456788889999999999999999985        23446788999999999999999999999887631    111223


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      ...++..+|.+|...|++++|+..|+++++.        ++....++..++.++...|++++|++.++++++...     
T Consensus       106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----  172 (389)
T PRK11788        106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-----  172 (389)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-----
Confidence            3467899999999999999999999998863        345567888999999999999999999999887521     


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      .+........+..+|.++...|++++|+.+++++++..        |....++..+|.++...|++++|++++++++.. 
T Consensus       173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-  243 (389)
T PRK11788        173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-  243 (389)
T ss_pred             CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            11122334456789999999999999999999998762        334567888999999999999999999999874 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  525 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~  525 (581)
                            +......++..++.+|...|++++|...++++++..     |+.    ..+..++.++...|+++ +|+..+++
T Consensus       244 ------~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~----~~~~~la~~~~~~g~~~-~A~~~l~~  307 (389)
T PRK11788        244 ------DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-----PGA----DLLLALAQLLEEQEGPE-AAQALLRE  307 (389)
T ss_pred             ------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc----hHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence                  112234567889999999999999999999988752     332    23478999999999999 99999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHH--HcCChhhhHHHHHHHHHHH
Q 008016          526 VLRIQEREFGSESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       526 a~~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~l~  572 (581)
                      +++.        .|+.......++..+.  ..|+.++|+..++++++..
T Consensus       308 ~l~~--------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        308 QLRR--------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             HHHh--------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            9874        2444433323332222  2568999999999988644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.91  E-value=6.8e-20  Score=196.95  Aligned_cols=500  Identities=14%  Similarity=0.052  Sum_probs=353.6

Q ss_pred             hccccchhhhhhccchhhHHHHHHhhhhcccCCCcccccccccccccccCC----cchHHhhhhhhhhhhhhccccchHH
Q 008016           40 CLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSA----PNDFARSKTLHDHSSNLWDGMNDFE  115 (581)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~  115 (581)
                      .+...++..+.|+..++++.+++...|.++.+..+...+...+...+.|..    ...|+++|.++..+....-...+..
T Consensus       259 v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~  338 (903)
T PRK04841        259 VLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQ  338 (903)
T ss_pred             HHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCch
Confidence            467888999999999999999999999998888887777777776666543    2359999999877653322222222


Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .........+..+...|++.+|+..+..+           .+.+.....+...+......|++..+..++..+....   
T Consensus       339 ~~~~lh~raa~~~~~~g~~~~Al~~a~~a-----------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---  404 (903)
T PRK04841        339 ELPELHRAAAEAWLAQGFPSEAIHHALAA-----------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---  404 (903)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHC-----------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---
Confidence            22222344456678899999988766543           2233445566667778888899888777766532111   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      ...++..   ....+.++...|++++|..++.++............ .........++.++...|++++|..++++++..
T Consensus       405 ~~~~~~l---~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  481 (903)
T PRK04841        405 LLENPRL---VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE  481 (903)
T ss_pred             HhcCcch---HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            1222332   355677888999999999999988765432210111 224455666888999999999999999999875


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                      ..   ..+......+...+|.++...|++++|...+++++......  ........++.++|.++...|++++|...+++
T Consensus       482 ~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~--g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  556 (903)
T PRK04841        482 LP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH--DVYHYALWSLLQQSEILFAQGFLQAAYETQEK  556 (903)
T ss_pred             CC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            21   11222344567889999999999999999999999987754  22233456778999999999999999999999


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHH
Q 008016          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA  434 (581)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  434 (581)
                      ++......  ..+..+....++..+|.++...|++++|...+++++.......   .......+..+|.++...|++++|
T Consensus       557 al~~~~~~--~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        557 AFQLIEEQ--HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHHHHHh--ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHH
Confidence            99988763  1222233334456789999999999999999999999875431   233456777899999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016          435 ERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  513 (581)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  513 (581)
                      ...+.++..+.... + ..... ..........+...|+.+.|..++.......   .+ ...........++.++...|
T Consensus       632 ~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~-~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        632 RRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FA-NNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             HHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---Cc-cchhHHHHHHHHHHHHHHcC
Confidence            99999998875442 1 11111 1111112244556899999988876653311   01 11112233567899999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          514 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       514 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      +++ +|...+++++...+.. + .......++..+|.++...|+.++|...+.+++++....
T Consensus       706 ~~~-~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        706 QFD-EAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             CHH-HHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            999 9999999999886553 2 234667788899999999999999999999999987543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=2.1e-20  Score=193.43  Aligned_cols=352  Identities=11%  Similarity=-0.002  Sum_probs=264.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+...+..+...|++++|+.+++++++.          .|..+.++..++.++...|++++|+..+++++...       
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-------  113 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSL----------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-------  113 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------
Confidence            3778889999999999999999999987          67777788899999999999999999999987764       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH---------
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR---------  270 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------  270 (581)
                      |.... +..+|.++...|++++|+..+++++...     ++   ...++..++.++...|..++|+..+++         
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~  184 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ---TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR  184 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence            44444 7889999999999999999999999863     22   345556678888777877777655552         


Q ss_pred             ------------------------------HHHHHHHhcC--CC----ChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 008016          271 ------------------------------VITILELNRG--TE----SADLVLPLFS-LGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       271 ------------------------------al~~~~~~~~--~~----~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~a  313 (581)
                                                    +++..+....  +.    .+....+... ++ .+...|++++|+..|+++
T Consensus       185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~l  263 (765)
T PRK10049        185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRL  263 (765)
T ss_pred             HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHh
Confidence                                          2221111110  11    1222333333 34 346779999999999998


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHH
Q 008016          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEG  392 (581)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  392 (581)
                      ++.     ++..|..+..+  +|.+|...|++++|+..|++++..       .+.. .........++.++...|++++|
T Consensus       264 l~~-----~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~-------~p~~~~~~~~~~~~L~~a~~~~g~~~eA  329 (765)
T PRK10049        264 KAE-----GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH-------PETIADLSDEELADLFYSLLESENYPGA  329 (765)
T ss_pred             hcc-----CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc-------CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence            764     12234444333  688999999999999999998763       2222 11123346677788999999999


Q ss_pred             HHHHHHHHHHHHHh---cC--CCCh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016          393 RELLEECLLITEKY---KG--KEHP--SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (581)
Q Consensus       393 ~~~~~~al~~~~~~---~~--~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (581)
                      +.+++++.......   .+  ...|  ....++..++.++...|++++|+..+++++..        .|.....+..+|.
T Consensus       330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--------~P~n~~l~~~lA~  401 (765)
T PRK10049        330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--------APGNQGLRIDYAS  401 (765)
T ss_pred             HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            99999887653110   00  1112  33457788999999999999999999999874        4666778999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016          466 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       466 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~  529 (581)
                      ++...|++++|++.+++++.+.        |+....+..+|.++...|+++ +|...++++++.
T Consensus       402 l~~~~g~~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~-~A~~~~~~ll~~  456 (765)
T PRK10049        402 VLQARGWPRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWR-QMDVLTDDVVAR  456 (765)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHH-HHHHHHHHHHHh
Confidence            9999999999999999998854        444467888999999999999 999999999884

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-21  Score=171.46  Aligned_cols=330  Identities=17%  Similarity=0.143  Sum_probs=266.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (581)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (581)
                      -|.-+++.|++...+.+|+.+++.-   .++-..+..+|..+|..|+..++|++|+++...-+.+.+.+  .+...-+.+
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvG---TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAKs   97 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVG---TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAKS   97 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhc---chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhccccc
Confidence            3667889999999999999998874   23445567778999999999999999999988777666554  233344667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC--------------------HHHHH
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK--------------------AVDAE  307 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~  307 (581)
                      ..+||..+...|.|++|+.+..+-+.+.++.  .+......+++++|.+|...|+                    ++.|.
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av  175 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV  175 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence            7899999999999999999999999988775  3445567899999999998875                    35566


Q ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (581)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (581)
                      ++|..-+++.++.  ++......++.+||..|+-.|+|+.|+...+.-+.+.++-    .+....-.++.++|.++.-.|
T Consensus       176 ~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef----GDrAaeRRA~sNlgN~hiflg  249 (639)
T KOG1130|consen  176 KFYMENLELSEKL--GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF----GDRAAERRAHSNLGNCHIFLG  249 (639)
T ss_pred             HHHHHHHHHHHHh--hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----hhHHHHHHhhcccchhhhhhc
Confidence            6676666666554  3444567889999999999999999999999999998873    344555678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016          388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (581)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (581)
                      +++.|+++|+..+.+..+.  .+....+...+.||..|.-..++++|+.++++-+.|.++..  +......+++.||..+
T Consensus       250 ~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~--DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  250 NFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE--DRIGELRACWSLGNAF  325 (639)
T ss_pred             ccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHH
Confidence            9999999999999998877  45556677888999999999999999999999999988762  3345567889999999


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      ...|..++|..+.++.+++..++-.  ......+..++.......|..+
T Consensus       326 ~alg~h~kAl~fae~hl~~s~ev~D--~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  326 NALGEHRKALYFAELHLRSSLEVND--TSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhCC--cchhhhhhhhhHHHHHHhCCCc
Confidence            9999999999999999998877632  2223345666777777777654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.91  E-value=6.3e-22  Score=172.96  Aligned_cols=330  Identities=16%  Similarity=0.113  Sum_probs=265.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      -|.-+++.|++...+.+|+.|++.-.    .+-.....+|..||.+|...++|++|+++..--+.+.+.+  .+....+.
T Consensus        23 EGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l--gdklGEAK   96 (639)
T KOG1130|consen   23 EGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL--GDKLGEAK   96 (639)
T ss_pred             HHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh--cchhcccc
Confidence            46667899999999999999998632    2334567789999999999999999999987766665543  23334466


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC--------------------HHHH
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN--------------------AEEA  348 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A  348 (581)
                      +.-+||+.+-..|.|++|+.+..+-+.+.++.  .+......+++++|.+|...|+                    ++.|
T Consensus        97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A  174 (639)
T KOG1130|consen   97 SSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA  174 (639)
T ss_pred             ccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence            77899999999999999999999999998877  4455678899999999998775                    4556


Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (581)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (581)
                      .++|..-+++.++.    .+......++.+||..|+-.|+++.|+...+.-+.+.++.  .+....-.++.++|.++.-.
T Consensus       175 v~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef--GDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  175 VKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF--GDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh--hhHHHHHHhhcccchhhhhh
Confidence            77777777776653    4455567788999999999999999999999999998776  34445567899999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  508 (581)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  508 (581)
                      |+++.|+++|+..+.+..+.  .+....+...+.||..|.-..++++|+.++.+-+.+.+++  .+......+++.||..
T Consensus       249 g~fe~A~ehYK~tl~LAiel--g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna  324 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIEL--GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNA  324 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHh--cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHH
Confidence            99999999999999988876  2344556678899999999999999999999999998876  3445566889999999


Q ss_pred             HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016          509 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  559 (581)
Q Consensus       509 ~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  559 (581)
                      +...|..+ +|+.+.++.+++..++-.+.  ....+..+|.+.-...|..+
T Consensus       325 ~~alg~h~-kAl~fae~hl~~s~ev~D~s--gelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  325 FNALGEHR-KALYFAELHLRSSLEVNDTS--GELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHhhhhHH-HHHHHHHHHHHHHHHhCCcc--hhhhhhhhhHHHHHHhCCCc
Confidence            99999999 99999999999887763322  23345556666666666543

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.90  E-value=1.4e-19  Score=188.43  Aligned_cols=348  Identities=12%  Similarity=0.068  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      ...++..+..++...|+++.|..+++.+.+.-     -.|+. .+++.+...|.+.|++++|..+|+++.+.     +. 
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-----l~pD~-~tynsLI~~y~k~G~vd~A~~vf~eM~~~-----Gv-  503 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-----LKADC-KLYTTLISTCAKSGKVDAMFEVFHEMVNA-----GV-  503 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-----CCCCH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHc-----CC-
Confidence            34567778888888999999999988876531     12332 35678888899999999999999887652     11 


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      .| ...++..+...|.+.|++++|..+|++..+.      .-.|+ ..+++.+...|.+.|++++|.+++.++.....  
T Consensus       504 ~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~--  573 (1060)
T PLN03218        504 EA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETH--  573 (1060)
T ss_pred             CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC--
Confidence            11 2567888899999999999999999887653      11232 56788999999999999999999988765310  


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                        +-.|+ ..+++.+...|.+.|++++|.++|+++.+.     ...++    ..+|+.+...|.+.|++++|..+|++..
T Consensus       574 --gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----gi~p~----~~tynsLI~ay~k~G~~deAl~lf~eM~  641 (1060)
T PLN03218        574 --PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----NIKGT----PEVYTIAVNSCSQKGDWDFALSIYDDMK  641 (1060)
T ss_pred             --CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence              11222 467888888999999999999999987664     12222    2356788889999999999999999876


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ..      .-.|+ ..++..+...|.+.|++++|.++++++.+.       ..+....++..+...|.+.|++++|.++|
T Consensus       642 ~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~eeA~~lf  707 (1060)
T PLN03218        642 KK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWKKALELY  707 (1060)
T ss_pred             Hc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            53      12333 357888889999999999999999988752       22223457889999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhh
Q 008016          481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  560 (581)
Q Consensus       481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  560 (581)
                      +++....      -.|+ ..++..|...|.+.|+.+ +|.+++++....     + -.|+ ..++..+...+.+.|+.++
T Consensus       708 ~eM~~~g------~~Pd-vvtyN~LI~gy~k~G~~e-eAlelf~eM~~~-----G-i~Pd-~~Ty~sLL~a~~k~G~le~  772 (1060)
T PLN03218        708 EDIKSIK------LRPT-VSTMNALITALCEGNQLP-KALEVLSEMKRL-----G-LCPN-TITYSILLVASERKDDADV  772 (1060)
T ss_pred             HHHHHcC------CCCC-HHHHHHHHHHHHHCCCHH-HHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHH
Confidence            8875421      1233 367899999999999999 999999887542     1 1233 4567778889999999999


Q ss_pred             hHHHHHHHHHH
Q 008016          561 KFPLKKRLSNL  571 (581)
Q Consensus       561 A~~~~~~a~~l  571 (581)
                      |.+++.++.+.
T Consensus       773 A~~l~~~M~k~  783 (1060)
T PLN03218        773 GLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHHHHc
Confidence            99999998764

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.90  E-value=1.8e-19  Score=187.78  Aligned_cols=378  Identities=12%  Similarity=0.039  Sum_probs=291.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..++.....+.+.|++++|+++|+++...        ...+.....+..+...+...|..++|..+++.+..        
T Consensus       371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~--------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--------  434 (1060)
T PLN03218        371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKR--------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--------  434 (1060)
T ss_pred             hHHHHHHHHHHHCcCHHHHHHHHHHHHhC--------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--------
Confidence            34555666778899999999999987542        11233444556667778889999999988876421        


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                       |.. .+++.+-..+...|++++|..+++++.+..       ......++..+...|.+.|++++|.++++++.+.    
T Consensus       435 -pd~-~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----  501 (1060)
T PLN03218        435 -PTL-STFNMLMSVCASSQDIDGALRVLRLVQEAG-------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA----  501 (1060)
T ss_pred             -CCH-HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----
Confidence             333 457788888999999999999999876631       1112567888999999999999999999987754    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                         +......+++.+...|.+.|++++|..+|.++.+.      .-.| ...+|+.+...|.+.|++++|.+++.++...
T Consensus       502 ---Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~  571 (1060)
T PLN03218        502 ---GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAE  571 (1060)
T ss_pred             ---CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence               11223678899999999999999999999987653      1223 3568999999999999999999999998763


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                      ..   ...|+    ..++..+...|.+.|++++|.++|+++.+.       +.+....+|+.+...|.+.|++++|..+|
T Consensus       572 ~~---gi~PD----~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf  637 (1060)
T PLN03218        572 TH---PIDPD----HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIY  637 (1060)
T ss_pred             cC---CCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            11   12233    235678888999999999999999987653       12223457889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  518 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~  518 (581)
                      +++...      .-.|+ ..++..+...|.+.|++++|.++++++.+.       .......++..+...|.+.|+.+ +
T Consensus       638 ~eM~~~------Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------G~~pd~~tynsLI~ay~k~G~~e-e  702 (1060)
T PLN03218        638 DDMKKK------GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------GIKLGTVSYSSLMGACSNAKNWK-K  702 (1060)
T ss_pred             HHHHHc------CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCCHH-H
Confidence            998762      22344 357889999999999999999999998652       12223367899999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       519 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      |..+|++..+.     + ..|+ ..+++.+...|.+.|++++|.++|+++...
T Consensus       703 A~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        703 ALELYEDIKSI-----K-LRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             HHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            99999877542     1 1233 467999999999999999999999998754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=2.6e-20  Score=192.60  Aligned_cols=344  Identities=14%  Similarity=0.070  Sum_probs=264.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC---HHHHHHH---------
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN---YEKSMLV---------  225 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~---------  225 (581)
                      .|.....+..++......|++++|..+++.+....   ++... .......++.+|...+.   ..++..+         
T Consensus       372 ~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  447 (987)
T PRK09782        372 EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ---GDARL-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ  447 (987)
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC---ccccc-CHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence            46677888899999999999999999999876531   11111 12234477777776655   3333222         


Q ss_pred             -------------HHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016          226 -------------YQRVINVLESRYGKTSIL--LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (581)
Q Consensus       226 -------------~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (581)
                                   +..+...    .+ ..|.  ...++.++|.++.. |++.+|+..+.+++...        |.. ...
T Consensus       448 ~~~~~~~~~~~~~~~~~~~a----l~-~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~  512 (987)
T PRK09782        448 RQWQSQLPGIADNCPAIVRL----LG-DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQH  512 (987)
T ss_pred             HHHHhhhhhhhhhHHHHHHh----cc-cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHH
Confidence                         2222222    11 2233  57789999999987 89999999999988762        222 235


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (581)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (581)
                      ..+|.++...|++++|+..+++++..        .+. ...+..+|.++...|++++|..+++++++.       .++..
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-------~P~~~  576 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-------GLGDN  576 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCccH
Confidence            56777778999999999999987542        112 234678899999999999999999999875       23332


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (581)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (581)
                         ..+..++......|++++|+..++++++..        |. ...+.++|.++.+.|++++|+..+++++.+      
T Consensus       577 ---~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------  638 (987)
T PRK09782        577 ---ALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL------  638 (987)
T ss_pred             ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence               233455666667799999999999998762        33 568899999999999999999999999985      


Q ss_pred             CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       451 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                        +|+...++.++|.++...|++++|+..++++++..        |....++.++|.++...|+++ +|+..+++++++ 
T Consensus       639 --~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--------P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l-  706 (987)
T PRK09782        639 --EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--------PDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD-  706 (987)
T ss_pred             --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc-
Confidence              57777899999999999999999999999998854        444578999999999999999 999999999984 


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          531 EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       531 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                             .|+...+....|.+.....+++.|.+.+.+...+..
T Consensus       707 -------~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        707 -------IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             -------CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence                   366677888899999999999999999988876643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.1e-22  Score=186.14  Aligned_cols=310  Identities=15%  Similarity=0.151  Sum_probs=242.5

Q ss_pred             hHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          201 LLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      .+...+..+|..|...  -+..+|+..|++ +.       ..++....++..+|..|+.+++|++|..+|+.+.+.    
T Consensus       315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~k-lp-------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~----  382 (638)
T KOG1126|consen  315 ELMELLRGLGEGYRSLSQYNCREALNLFEK-LP-------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI----  382 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH-------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence            4445566666666543  445677777776 22       233455688999999999999999999999998776    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                          .|......-....+++...+--+--.+.+..+        ..++....+|..+|.+|.-+++++.|++.|++|+++
T Consensus       383 ----~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li--------~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl  450 (638)
T KOG1126|consen  383 ----EPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI--------DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL  450 (638)
T ss_pred             ----ccccccchhHHHHHHHHHHhhHHHHHHHHHHH--------hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc
Confidence                23333333333444444433222222222222        235666788999999999999999999999999987


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                                ++....+|..+|.=+....++|.|..+|+.|+.+        .|....+|+.+|.+|.++++++.|+-+|
T Consensus       451 ----------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~f  512 (638)
T KOG1126|consen  451 ----------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHF  512 (638)
T ss_pred             ----------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHH
Confidence                      3334567778888899999999999999999876        4666789999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  518 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~  518 (581)
                      ++|+++        +|........+|.++.+.|+.++|+.++++|+.+.     +.+|   -..+..|.++...++++ +
T Consensus       513 qkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~---l~~~~~~~il~~~~~~~-e  575 (638)
T KOG1126|consen  513 QKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNP---LCKYHRASILFSLGRYV-E  575 (638)
T ss_pred             HhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCc---hhHHHHHHHHHhhcchH-H
Confidence            999986        67777788999999999999999999999998754     3333   56788999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       519 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      |+..+++..++        .|+...++..+|.+|.+.|+.+.|+..|-=|.++.++-.+
T Consensus       576 al~~LEeLk~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  576 ALQELEELKEL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHHHHh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            99999988774        4777899999999999999999999999999988877544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=3.1e-21  Score=170.87  Aligned_cols=372  Identities=16%  Similarity=0.114  Sum_probs=193.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (581)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (581)
                      +..+++..+|.+|+.+|+-++...+.+.     ......++.++|..+.+.|.|+.|+..|+......       |....
T Consensus       244 gni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-------pn~~a  311 (840)
T KOG2003|consen  244 GNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-------PNFIA  311 (840)
T ss_pred             cceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-------ccHHh
Confidence            3446667778888888888887654432     44556778888999999999999998888765543       44443


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-------------------------------------------------
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLES-------------------------------------------------  235 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------------------------  235 (581)
                      . +++..+++..|+-++-.+.|++.+.+--.                                                 
T Consensus       312 ~-~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii  390 (840)
T KOG2003|consen  312 A-LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII  390 (840)
T ss_pred             h-hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3 44566667777777777777766554100                                                 


Q ss_pred             --HcCCC-----------------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016          236 --RYGKT-----------------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (581)
Q Consensus       236 --~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (581)
                        +..++                 .+.....-.+.+.-+.+.|+++.|++.++-.-    +   .++.....+-++|..+
T Consensus       391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~----~---kdnk~~saaa~nl~~l  463 (840)
T KOG2003|consen  391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE----K---KDNKTASAAANNLCAL  463 (840)
T ss_pred             ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH----h---ccchhhHHHhhhhHHH
Confidence              00000                 00111122334556677778877776653211    1   1222223333444444


Q ss_pred             HHHc--CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 008016          297 FIKE--GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  374 (581)
Q Consensus       297 ~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  374 (581)
                      ++.+  .++.+|..+...++.+        +...+.++.+.|.+-+..|++++|.+.|++++..          +.....
T Consensus       464 ~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------dasc~e  525 (840)
T KOG2003|consen  464 RFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----------DASCTE  525 (840)
T ss_pred             HHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----------chHHHH
Confidence            4442  2444555555544433        2233344455555555556666666666555532          222234


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      +++++|..+..+|+.++|+.+|-+.-.+..        ..+.++..++.+|....+..+|++++.++..+        -|
T Consensus       526 alfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sl--------ip  589 (840)
T KOG2003|consen  526 ALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSL--------IP  589 (840)
T ss_pred             HHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--------CC
Confidence            455566666666666666665555444431        22345555555565555666666555555442        12


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  534 (581)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~  534 (581)
                      ....++..||.+|-+.|+-.+|.+++-.....+        |...++..+|+..|....-++ +|+.+|+++.-+     
T Consensus       590 ~dp~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~e-kai~y~ekaali-----  655 (840)
T KOG2003|consen  590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSE-KAINYFEKAALI-----  655 (840)
T ss_pred             CCHHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHH-HHHHHHHHHHhc-----
Confidence            222344555555555555555555444433322        233334444444444444344 555555544322     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Q 008016          535 GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR  567 (581)
Q Consensus       535 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  567 (581)
                         .|........++.++.+.|+|.+|.++|+.
T Consensus       656 ---qp~~~kwqlmiasc~rrsgnyqka~d~yk~  685 (840)
T KOG2003|consen  656 ---QPNQSKWQLMIASCFRRSGNYQKAFDLYKD  685 (840)
T ss_pred             ---CccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence               133334444445555555555555555544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.89  E-value=6.9e-20  Score=189.48  Aligned_cols=359  Identities=10%  Similarity=-0.018  Sum_probs=265.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHH----------
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQSL----------  184 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~----------  184 (581)
                      ...+...+....+.|++++|..+++++...-       .+..........++..|...+.   ..++..+          
T Consensus       376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  448 (987)
T PRK09782        376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-------GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR  448 (987)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-------cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence            3446666777899999999999999987630       0011122334467777766655   3333222          


Q ss_pred             ------------HHHHHHHHhhcCCCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016          185 ------------LDMMSGIVDSLKDDEPL--LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (581)
Q Consensus       185 ------------~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (581)
                                  +..+....    +..|.  ...++..+|.++.. |++.+|+..+.+++...     ++    ......
T Consensus       449 ~~~~~~~~~~~~~~~~~~al----~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-----Pd----~~~~L~  514 (987)
T PRK09782        449 QWQSQLPGIADNCPAIVRLL----GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-----PD----AWQHRA  514 (987)
T ss_pred             HHHhhhhhhhhhHHHHHHhc----ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-----Cc----hHHHHH
Confidence                        22222222    33344  66788999999987 89999999999988753     22    123566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      +|.++...|++++|+..+++++..        .+. ...+..+|.++...|++++|..+++++++.        +|....
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~  577 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNA  577 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHH
Confidence            777788999999999999987543        111 234678899999999999999999999875        233444


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      .+..++......|++++|+..++++++.       .|+    ...+.++|.++...|++++|+..+++++..        
T Consensus       578 l~~~La~~l~~~Gr~~eAl~~~~~AL~l-------~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------  638 (987)
T PRK09782        578 LYWWLHAQRYIPGQPELALNDLTRSLNI-------APS----ANAYVARATIYRQRHNVPAAVSDLRAALEL--------  638 (987)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            5555666667789999999999999986       332    356789999999999999999999999987        


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      .|....++.++|.++...|++++|+..++++++.        +|....++.++|.++...|++++|+..+++++++.   
T Consensus       639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---  707 (987)
T PRK09782        639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI---  707 (987)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            3555678999999999999999999999999985        56777899999999999999999999999998754   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016          491 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  559 (581)
Q Consensus       491 ~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  559 (581)
                           |+.+.+....|.+.....++. .|.+.+.++..+.        +... +....|.++..++++-
T Consensus       708 -----P~~a~i~~~~g~~~~~~~~~~-~a~~~~~r~~~~~--------~~~~-a~~~~g~~~~~~~~~~  761 (987)
T PRK09782        708 -----DNQALITPLTPEQNQQRFNFR-RLHEEVGRRWTFS--------FDSS-IGLRSGAMSTANNNVG  761 (987)
T ss_pred             -----CCCchhhhhhhHHHHHHHHHH-HHHHHHHHHhhcC--------ccch-hccccchHhhhccccc
Confidence                 555566777788876666666 6666666655431        2222 5556666676666653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.7e-21  Score=179.95  Aligned_cols=296  Identities=16%  Similarity=0.112  Sum_probs=232.0

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      .+......-+..+|+..|++.-.          ..+....++..+|..|+.+++|++|..+|+.+.+...-.    .+..
T Consensus       325 ~~~~~~s~y~~~~A~~~~~klp~----------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~m  390 (638)
T KOG1126|consen  325 EGYRSLSQYNCREALNLFEKLPS----------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGM  390 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHH----------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccch
Confidence            33344555667888888888222          256666899999999999999999999999987764221    1111


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVY-QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      ++   ...+++...+- -++.++ +..++        .++....+|..+|.+|..+++++.|++.|++|+++        
T Consensus       391 ei---yST~LWHLq~~-v~Ls~Laq~Li~--------~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------  450 (638)
T KOG1126|consen  391 EI---YSTTLWHLQDE-VALSYLAQDLID--------TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------  450 (638)
T ss_pred             hH---HHHHHHHHHhh-HHHHHHHHHHHh--------hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------
Confidence            22   22223322221 122222 22222        23445678999999999999999999999999998        


Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +|....+|..+|.-+....+++.|..+|+.|+.+        +|....+|+.+|.+|.++++++.|+-+|++|+++    
T Consensus       451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----  518 (638)
T KOG1126|consen  451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI----  518 (638)
T ss_pred             CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC----
Confidence            6778889999999999999999999999999976        5677899999999999999999999999999987    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                         +|..   ..+...+|.++.+.|+.++|+.++++|+.+.        |...-..+..|.++...+++++|+..+++..
T Consensus       519 ---NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk  584 (638)
T KOG1126|consen  519 ---NPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLD--------PKNPLCKYHRASILFSLGRYVEALQELEELK  584 (638)
T ss_pred             ---Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHH
Confidence               3333   3345779999999999999999999998762        3334567788999999999999999999987


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ++        .|+...++..+|.+|.+.|+.+.|+..|.-|.++.
T Consensus       585 ~~--------vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  585 EL--------VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             Hh--------CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            75        57777899999999999999999999999887743

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2.9e-19  Score=158.94  Aligned_cols=304  Identities=15%  Similarity=0.120  Sum_probs=227.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      ++.++....+.++++.-++.....       .-+.....-...|.+...+.++++|+..|+...+.        +|....
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~-------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~  297 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSV-------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLD  297 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcch
Confidence            444555555555555555444332       12223344556678888888889888888887654        343333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      -+....+++.-..+-.+-.-+-+.+..+        +.....+...+|+.|.-.++.++|+.+|++++++          
T Consensus       298 dmdlySN~LYv~~~~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----------  359 (559)
T KOG1155|consen  298 DMDLYSNVLYVKNDKSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----------  359 (559)
T ss_pred             hHHHHhHHHHHHhhhHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----------
Confidence            3334444444443322222222222222        2233455667888899999999999999999997          


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      ++....+|..+|.-|..+.+...|++.|++|+++.        |....+|+.||..|..++...=|+-+|++|...    
T Consensus       360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----  427 (559)
T KOG1155|consen  360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----  427 (559)
T ss_pred             CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----
Confidence            33346678889999999999999999999999884        556689999999999999999999999999984    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                          .|.....|..||.+|.+.++.++|++.|.+++...      +  ....++..||.+|.+.++.. +|..+|++.++
T Consensus       428 ----kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------d--te~~~l~~LakLye~l~d~~-eAa~~yek~v~  494 (559)
T KOG1155|consen  428 ----KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------D--TEGSALVRLAKLYEELKDLN-EAAQYYEKYVE  494 (559)
T ss_pred             ----CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------c--cchHHHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence                46667789999999999999999999999998743      1  13367999999999999999 99999999998


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          529 IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      .. ...|...+++..+..-|+.-+.+.+++++|..+..+++.-
T Consensus       495 ~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  495 VS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            76 3445567888888888999999999999999876666544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=5.2e-20  Score=164.66  Aligned_cols=368  Identities=14%  Similarity=0.089  Sum_probs=268.7

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (581)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (581)
                      ..+..+-..|+-++..|+|++|+.+|..++.+.    ++.   ...+.+.+-+|...|++++.++...+++++       
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl-------  178 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDE---PIFYSNRAACYESLGDWEKVIEDCTKALEL-------  178 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhc-------
Confidence            345667888999999999999999999999886    332   345788999999999999999999999986       


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHH------------------HHHHH-----HHHHhcCCC-Chhh-----HHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIY------------------HRVIT-----ILELNRGTE-SADL-----VLPL  290 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------~~al~-----~~~~~~~~~-~~~~-----~~~~  290 (581)
                       .|..+.+++..+.++...|++++|+.-.                  ++.++     -....++.+ .|..     ..++
T Consensus       179 -~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy  257 (606)
T KOG0547|consen  179 -NPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY  257 (606)
T ss_pred             -CcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence             4677899999999999999999987543                  22221     111112211 1111     1111


Q ss_pred             HH--------------------HHH--HHHHc---CCHHHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHH
Q 008016          291 FS--------------------LGS--LFIKE---GKAVDAESVFSRILKIYTKVYGEN-----DGRVGMAMCSLAHAKC  340 (581)
Q Consensus       291 ~~--------------------la~--~~~~~---g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~la~~~~  340 (581)
                      +.                    +..  -+...   ..|.+|...+.+...........+     -...+.++...|..++
T Consensus       258 f~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  258 FGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             HhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence            10                    000  01111   145555555555544433322211     1224777888899999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (581)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (581)
                      -.|++..|...+++++.+...       .   ...|..+|.+|....+.++....|.+|..+        +|....+|+.
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~-------~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyH  399 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPA-------F---NSLYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYH  399 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcc-------c---chHHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHh
Confidence            999999999999999987322       2   223678999999999999999999999876        3445568999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE  500 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  500 (581)
                      .|.++.-.+++++|+.-|++++.+        +|+.+..+..++.+.+++++++++...|+++...+        |...+
T Consensus       400 RgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~E  463 (606)
T KOG0547|consen  400 RGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPE  463 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCch
Confidence            999999999999999999999985        67888899999999999999999999999998865        44557


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      ++...|.++..+++++ +|++.|..++++....-+.......-+...+... .-.+++..|.+++++|+++.++..+.
T Consensus       464 vy~~fAeiLtDqqqFd-~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A  539 (606)
T KOG0547|consen  464 VYNLFAEILTDQQQFD-KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQA  539 (606)
T ss_pred             HHHHHHHHHhhHHhHH-HHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHH
Confidence            8899999999999999 9999999999876442111000011112222222 23489999999999999998886653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.88  E-value=2.8e-20  Score=192.20  Aligned_cols=370  Identities=13%  Similarity=0.042  Sum_probs=262.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...+...+..|.+.|++++|..+|+++.             ..+..+++.+...|.+.|++++|..+|+++.....  .+
T Consensus       158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~--~p  222 (697)
T PLN03081        158 QYMMNRVLLMHVKCGMLIDARRLFDEMP-------------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS--DA  222 (697)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHhcCC-------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC--CC
Confidence            3345666778888999999998888753             12456788999999999999999999998765310  11


Q ss_pred             Ccc-------------------------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016          198 DEP-------------------------------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (581)
Q Consensus       198 ~~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (581)
                      +..                               ....+++.+...|.+.|++++|...|+++..       +    ...
T Consensus       223 ~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----~~v  291 (697)
T PLN03081        223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------K----TTV  291 (697)
T ss_pred             ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-------C----Chh
Confidence            100                               0112345667778888888888888775421       1    245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      +|+.+...|...|++++|+.+|++..+.      .-.| ...++..+...+...|++++|.+.+..+++.       ..+
T Consensus       292 t~n~li~~y~~~g~~~eA~~lf~~M~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-------g~~  357 (697)
T PLN03081        292 AWNSMLAGYALHGYSEEALCLYYEMRDS------GVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-------GFP  357 (697)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-------CCC
Confidence            7888888888888888888888876543      1122 2456777888888888888888888877664       122


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (581)
                      ....+++.+...|.+.|++++|...|+++.+         ++    ..+|+.+...|...|+.++|+++|++....    
T Consensus       358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~----  420 (697)
T PLN03081        358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR---------KN----LISWNALIAGYGNHGRGTKAVEMFERMIAE----  420 (697)
T ss_pred             CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            3345677788888888888888888876532         22    235677888888888888888888887653    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                        ...|+. .++..+...+...|..++|.++|+.+.+..     +..|+. ..+..+...|.+.|++++|.+.++++   
T Consensus       421 --g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-----g~~p~~-~~y~~li~~l~r~G~~~eA~~~~~~~---  488 (697)
T PLN03081        421 --GVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENH-----RIKPRA-MHYACMIELLGREGLLDEAYAMIRRA---  488 (697)
T ss_pred             --CCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-----CCCCCc-cchHhHHHHHHhcCCHHHHHHHHHHC---
Confidence              123332 456677778888888888888888876521     122332 36777888888899999888877643   


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH
Q 008016          487 REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKK  566 (581)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  566 (581)
                            +..|+ ..++..+...+...|+.+ .|...+++.+++        .|+....+..++++|.+.|++++|.++++
T Consensus       489 ------~~~p~-~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~--------~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        489 ------PFKPT-VNMWAALLTACRIHKNLE-LGRLAAEKLYGM--------GPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             ------CCCCC-HHHHHHHHHHHHHcCCcH-HHHHHHHHHhCC--------CCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence                  22233 246888888888899888 887777766542        24445678899999999999999999999


Q ss_pred             HHHHHH
Q 008016          567 RLSNLR  572 (581)
Q Consensus       567 ~a~~l~  572 (581)
                      ++.+.+
T Consensus       553 ~m~~~g  558 (697)
T PLN03081        553 TLKRKG  558 (697)
T ss_pred             HHHHcC
Confidence            887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=1.4e-18  Score=167.30  Aligned_cols=402  Identities=15%  Similarity=0.112  Sum_probs=291.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (581)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (581)
                      ...+.++.++..|..++..|++++|..++.++++.          .|....++..||.+|...|+.+++....-.+..+.
T Consensus       134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~  203 (895)
T KOG2076|consen  134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN  203 (895)
T ss_pred             ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            34467888999999999999999999999999987          88899999999999999999999988877665543


Q ss_pred             hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (581)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (581)
                          +.++   ..|..++....++|++.+|.-+|.+|++..        |.........+.+|.+.|+...|...|.+++
T Consensus       204 ----p~d~---e~W~~ladls~~~~~i~qA~~cy~rAI~~~--------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~  268 (895)
T KOG2076|consen  204 ----PKDY---ELWKRLADLSEQLGNINQARYCYSRAIQAN--------PSNWELIYERSSLYQKTGDLKRAMETFLQLL  268 (895)
T ss_pred             ----CCCh---HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence                2222   568889999999999999999999999862        3346677888999999999999999999999


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (581)
                      .....   .+...........+..+...++-+.|.+.++.++....      +......++.++.++.....++.|....
T Consensus       269 ~~~p~---~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~------~~~~~ed~ni~ael~l~~~q~d~~~~~i  339 (895)
T KOG2076|consen  269 QLDPP---VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK------DEASLEDLNILAELFLKNKQSDKALMKI  339 (895)
T ss_pred             hhCCc---hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc------ccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence            87320   11112233344557788888888999999999887422      2233345567888999999999998887


Q ss_pred             HHHHHHHHhh------------------ccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH
Q 008016          353 KKALRVIKDS------------------NYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS  413 (581)
Q Consensus       353 ~~al~~~~~~------------------~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (581)
                      ......-.+.                  -..+.+- ..+..+...++.+..+.++..+++..+..--.       ....+
T Consensus       340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d  412 (895)
T KOG2076|consen  340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSD  412 (895)
T ss_pred             HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhh
Confidence            7665510000                  0001111 11111244455555555566666554432111       11345


Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      ....+..++..|...|++.+|+.++..+...       ........|..+|.+|..+|.+++|++.|++++...      
T Consensus       413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------  479 (895)
T KOG2076|consen  413 DVDLYLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------  479 (895)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------
Confidence            5678899999999999999999999988662       222335689999999999999999999999999854      


Q ss_pred             CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          494 DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ-EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       494 ~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                        |+..++...|+.++..+|+.+ +|.+.+++...-- ...-+...+...........+|...|+.++=+..-..++..
T Consensus       480 --p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~  555 (895)
T KOG2076|consen  480 --PDNLDARITLASLYQQLGNHE-KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD  555 (895)
T ss_pred             --CCchhhhhhHHHHHHhcCCHH-HHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              445578899999999999999 8888877743100 00001112344567788899999999998855554444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.5e-19  Score=161.20  Aligned_cols=374  Identities=14%  Similarity=0.084  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+...+...+..|+|+.|+.+|.+++.+          +|.+...+.+...+|...|+|++|.+--.+..++.       
T Consensus         4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------   66 (539)
T KOG0548|consen    4 ELKEKGNAAFSSGDFETAIRLFTEAIML----------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------   66 (539)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHcc----------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------
Confidence            4567788899999999999999999987          77788889999999999999999998888776664       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC--------------------
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG--------------------  259 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------------------  259 (581)
                      |.++..|..+|..+...|+|++|+..|.+.|+..        |.....+.+++.++....                    
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d--------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~  138 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD--------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL  138 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC--------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence            8888899999999999999999999999998852        223334444444441110                    


Q ss_pred             -CHHHHHHHHHHHHHHHHHh--------------------cC----------------CCC---------------hh--
Q 008016          260 -RAKKAVEIYHRVITILELN--------------------RG----------------TES---------------AD--  285 (581)
Q Consensus       260 -~~~~A~~~~~~al~~~~~~--------------------~~----------------~~~---------------~~--  285 (581)
                       ++-.....|...++..+..                    .+                ...               ..  
T Consensus       139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~  218 (539)
T KOG0548|consen  139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER  218 (539)
T ss_pred             hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence             0000001111111111000                    00                000               01  


Q ss_pred             ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          286 ----LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       286 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                          .....-.+|.......++..|++.+..++++.         .....+++.+.+|...|.+.+.+.....+++...+
T Consensus       219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre  289 (539)
T KOG0548|consen  219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE  289 (539)
T ss_pred             HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence                23345678999999999999999999999873         34456788999999999999999999988876544


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh--c----------------CCCChHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY--K----------------GKEHPSFVTHLLNLAA  423 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~----------------~~~~~~~~~~~~~la~  423 (581)
                      .   ..+...+...+..+|..|...++++.|+.+|++++...+..  .                .-..|..+.-...-|.
T Consensus       290 ~---rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGn  366 (539)
T KOG0548|consen  290 L---RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGN  366 (539)
T ss_pred             H---HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHH
Confidence            2   12233355556667889999999999999999987654320  0                0011222222233345


Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  503 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (581)
                      .++..|+|..|+..|.+++..        +|+....|.+.|.+|...|.+..|+.-.+.++++        +|.....+.
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~  430 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYL  430 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHH
Confidence            555555555555555555442        3444555555555555555555555555555443        344445555


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016          504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  555 (581)
Q Consensus       504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  555 (581)
                      .-|.++..+.+++ +|++.|+++++.        +|....+...+..++..+
T Consensus       431 RKg~al~~mk~yd-kAleay~eale~--------dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  431 RKGAALRAMKEYD-KALEAYQEALEL--------DPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhc--------CchhHHHHHHHHHHHHHh
Confidence            5555555555555 555555555442        244444444444444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.87  E-value=2e-19  Score=185.82  Aligned_cols=335  Identities=13%  Similarity=0.094  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +...+..+.+.|++++|+.+|+.+...        ........++..+..++...++++.+..++..+...-     -.|
T Consensus        90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~--------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-----~~~  156 (697)
T PLN03081         90 LCSQIEKLVACGRHREALELFEILEAG--------CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-----FEP  156 (697)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----CCc
Confidence            444556677778888888887765431        1112334566777777777777777777776654431     112


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN--  278 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--  278 (581)
                      + ..+++.+...|.+.|++++|..+|+++.+       +    ...+|+.+...|.+.|++++|+.+|++.++.....  
T Consensus       157 ~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~  224 (697)
T PLN03081        157 D-QYMMNRVLLMHVKCGMLIDARRLFDEMPE-------R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP  224 (697)
T ss_pred             c-hHHHHHHHHHHhcCCCHHHHHHHHhcCCC-------C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence            2 23456677777777777777777766532       1    13456777777777777777777777765321000  


Q ss_pred             --------------------------cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016          279 --------------------------RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (581)
Q Consensus       279 --------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (581)
                                                ..........+++.|...|.+.|++++|...|++..           +....+|
T Consensus       225 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~  293 (697)
T PLN03081        225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----------EKTTVAW  293 (697)
T ss_pred             hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----------CCChhHH
Confidence                                      000001123355677888888888888888887642           1234678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (581)
                      +.+...|.+.|++++|..+|+++.+.     +..|+.    .++..+...+...|++++|.+++..+++..       .+
T Consensus       294 n~li~~y~~~g~~~eA~~lf~~M~~~-----g~~pd~----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~  357 (697)
T PLN03081        294 NSMLAGYALHGYSEEALCLYYEMRDS-----GVSIDQ----FTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FP  357 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCCH----HHHHHHHHHHHhccchHHHHHHHHHHHHhC-------CC
Confidence            88888888888888888888887553     122332    244666677777777777777776665431       11


Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (581)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  492 (581)
                      ....+++.|...|.+.|+.++|...|++..+          ++ ..+|..+...|.+.|+.++|.++|+++.+..   . 
T Consensus       358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---~-  422 (697)
T PLN03081        358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LISWNALIAGYGNHGRGTKAVEMFERMIAEG---V-  422 (697)
T ss_pred             CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-
Confidence            1223455556666666666666666554421          11 1245555556666666666666665544311   1 


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016          493 KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  526 (581)
Q Consensus       493 ~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a  526 (581)
                        .|+ ..++..+...+...|..+ +|..+|+..
T Consensus       423 --~Pd-~~T~~~ll~a~~~~g~~~-~a~~~f~~m  452 (697)
T PLN03081        423 --APN-HVTFLAVLSACRYSGLSE-QGWEIFQSM  452 (697)
T ss_pred             --CCC-HHHHHHHHHHHhcCCcHH-HHHHHHHHH
Confidence              111 133444444455555554 444444444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2e-19  Score=164.06  Aligned_cols=393  Identities=15%  Similarity=0.131  Sum_probs=283.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-------
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-------  192 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------  192 (581)
                      ..+-.++.++-.|++..|..+...-. .          ......+.+..+.++....++++|..++.......       
T Consensus        51 d~~~~aq~l~~~~~y~ra~~lit~~~-l----------e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~  119 (611)
T KOG1173|consen   51 DIYWLAQVLYLGRQYERAAHLITTYK-L----------EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYE  119 (611)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhh-h----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcc
Confidence            35667788888888888877665431 1          34456677888999999999999988877321100       


Q ss_pred             ----hhcCCCc-------chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH---------------------cC--
Q 008016          193 ----DSLKDDE-------PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR---------------------YG--  238 (581)
Q Consensus       193 ----~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~~--  238 (581)
                          ..+..+.       ......++..|.+|....+.++|...|.+|+......                     +.  
T Consensus       120 ~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l  199 (611)
T KOG1173|consen  120 KDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESL  199 (611)
T ss_pred             hhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcc
Confidence                0000000       1112345566788888888999999998886431000                     00  


Q ss_pred             ---------------------------------CC-----CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          239 ---------------------------------KT-----SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       239 ---------------------------------~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                                                       ++     ...........+..++..+++.+..+..+..++.      
T Consensus       200 ~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~------  273 (611)
T KOG1173|consen  200 DLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK------  273 (611)
T ss_pred             cHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh------
Confidence                                             00     0012233444556666666777666666666655      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                       +.+.....-..+| ++...|+..+=..+-.+.++        ..|..+.+|..+|..|...|++.+|..+|.++..+  
T Consensus       274 -dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~--------~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--  341 (611)
T KOG1173|consen  274 -DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVD--------LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--  341 (611)
T ss_pred             -CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHH--------hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--
Confidence             2233333344555 66677765544333333333        36777888999999999999999999999999876  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                              ++.+...|...|..+...|..++|+..|..|-++...    .|    .....+|.-|...++++-|..+|.+
T Consensus       342 --------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G----~h----lP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  342 --------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG----CH----LPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             --------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC----Cc----chHHHHHHHHHHhccHHHHHHHHHH
Confidence                    4445667889999999999999999999998887532    22    2345678889999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHH
Q 008016          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  520 (581)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~  520 (581)
                      |+.+        .|.....+..+|.+.+..+.|.+|..+|+.++...+... +..+.....+.+||.++.++++++ +|+
T Consensus       406 A~ai--------~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~-~e~~~w~p~~~NLGH~~Rkl~~~~-eAI  475 (611)
T KOG1173|consen  406 ALAI--------APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL-NEKIFWEPTLNNLGHAYRKLNKYE-EAI  475 (611)
T ss_pred             HHhc--------CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc-ccccchhHHHHhHHHHHHHHhhHH-HHH
Confidence            9996        355556778999999999999999999999996555443 333455667899999999999999 999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          521 ELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       521 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      .++++++.+        .|..+.++..+|.+|..+|+++.|++.|.+++.+.+..
T Consensus       476 ~~~q~aL~l--------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  476 DYYQKALLL--------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHHHHHc--------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            999999985        36667889999999999999999999999999887643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=3.3e-18  Score=173.46  Aligned_cols=396  Identities=12%  Similarity=0.014  Sum_probs=267.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ..+..+...++.|+++.|++.|+++++.          .|..+.....++.++...|+.++|+.+++++..       ..
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~----------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-------p~   98 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKA----------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-------SM   98 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhh----------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-------CC
Confidence            4667778888999999999999999876          555533333777777788999999999988751       11


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      +.....+..+|.++...|++++|+..|+++++..     ++.   ..++..++..+...++.++|+..++++...     
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-----P~n---~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----  165 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-----PTN---PDLISGMIMTQADAGRGGVVLKQATELAER-----  165 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----
Confidence            2223345556888999999999999999988752     222   455567788889999999999988887765     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------------cC---------CCCc-----------
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------------YG---------ENDG-----------  326 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~---------~~~~-----------  326 (581)
                         .|.... +..++.++...++..+|+..++++++.....             .+         ..+|           
T Consensus       166 ---dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l  241 (822)
T PRK14574        166 ---DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL  241 (822)
T ss_pred             ---CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence               333222 2445666666777777888888887652100             00         0000           


Q ss_pred             ------------------------------------------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          327 ------------------------------------------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       327 ------------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                                                                      ....+....-.++...|++.+++..|+.....
T Consensus       242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~  321 (822)
T PRK14574        242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE  321 (822)
T ss_pred             HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence                                                            00001111111222333333333333332211


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                             +..-|.  .+....|..|...+++++|+.+|++++.-....  ...+........|-..|...+++++|..++
T Consensus       322 -------~~~~P~--y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l  390 (822)
T PRK14574        322 -------GYKMPD--YARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQLDKAYQFA  390 (822)
T ss_pred             -------CCCCCH--HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence                   111121  233567888888888888888888876532110  011222333456777889999999999999


Q ss_pred             HHHHHHHHH-h--c----CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016          439 RICLDIMTK-T--V----GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  511 (581)
Q Consensus       439 ~~al~~~~~-~--~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  511 (581)
                      ++..+...- .  .    ...+|+.......++.++...|++.+|++.+++.+...        |........+|.++..
T Consensus       391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--------P~n~~l~~~~A~v~~~  462 (822)
T PRK14574        391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--------PANQNLRIALASIYLA  462 (822)
T ss_pred             HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHh
Confidence            988762110 0  1    13457777888889999999999999999999997654        4444778899999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          512 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       512 ~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      .|.+. +|+..++.+..+        +|+...+....+.++..+|++.+|....+.+++..++...
T Consensus       463 Rg~p~-~A~~~~k~a~~l--------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        463 RDLPR-KAEQELKAVESL--------APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             cCCHH-HHHHHHHHHhhh--------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            99999 999999777653        4666788889999999999999999999888877666544

>PLN03077 Protein ECB2; Provisional

Probab=99.86  E-value=9.3e-19  Score=185.49  Aligned_cols=386  Identities=12%  Similarity=0.058  Sum_probs=239.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHH------------------------HHH--hcCCCChhHHHHHHHHHHHH
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVK------------------------EQI--NAGNKGIEEVAILDIIALGY  172 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~--~~~~~~~~~~~~~~~l~~~~  172 (581)
                      ..+......+.+.|++++|+.+|+++.+.-.                        .+.  ....+...+..+++.+...|
T Consensus       254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y  333 (857)
T PLN03077        254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY  333 (857)
T ss_pred             chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            4466777888889999999998888754200                        000  00001112334445555555


Q ss_pred             HHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (581)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (581)
                      .+.|++++|..+|+++..         ++ ..+|+.+...|.+.|++++|+.+|+++....   ..++    ..++..+-
T Consensus       334 ~k~g~~~~A~~vf~~m~~---------~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd----~~t~~~ll  396 (857)
T PLN03077        334 LSLGSWGEAEKVFSRMET---------KD-AVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPD----EITIASVL  396 (857)
T ss_pred             HhcCCHHHHHHHHhhCCC---------CC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCC----ceeHHHHH
Confidence            555555555555554311         11 1234555555556666666666655543321   1111    12333334


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (581)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (581)
                      ..+...|++++|.+++..+.+.       +......+++.|...|.+.|++++|.+.|++..+           ....+|
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~-------g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----------~d~vs~  458 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERK-------GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----------KDVISW  458 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHh-------CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----------CCeeeH
Confidence            4555555555555555554433       1122345677788888888888888888876431           123467


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH-------------------------------HHHHHH
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM-------------------------------RIDLAE  381 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------------------------------~~~la~  381 (581)
                      +.+...|...|+.++|+.+|+++...      ..|+...+..+                               .+.+..
T Consensus       459 ~~mi~~~~~~g~~~eA~~lf~~m~~~------~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~  532 (857)
T PLN03077        459 TSIIAGLRLNNRCFEALIFFRQMLLT------LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD  532 (857)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhC------CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence            78888888999999999998887642      23443332221                               134456


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (581)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (581)
                      .|.+.|+.++|...|+..            .....+|+.+...|...|+.++|+++|++..+.      +..|+. .++.
T Consensus       533 ~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~------g~~Pd~-~T~~  593 (857)
T PLN03077        533 LYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES------GVNPDE-VTFI  593 (857)
T ss_pred             HHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCc-ccHH
Confidence            777778888887777653            112357888899999999999999999987652      123443 3566


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH------------H-
Q 008016          462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL------------R-  528 (581)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~------------~-  528 (581)
                      .+...+.+.|+.++|.++|+++.+..     +-.|+ ...+..+..++.+.|+.+ +|.+++++.-            . 
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~-----gi~P~-~~~y~~lv~~l~r~G~~~-eA~~~~~~m~~~pd~~~~~aLl~a  666 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKY-----SITPN-LKHYACVVDLLGRAGKLT-EAYNFINKMPITPDPAVWGALLNA  666 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHh-----CCCCc-hHHHHHHHHHHHhCCCHH-HHHHHHHHCCCCCCHHHHHHHHHH
Confidence            67778889999999999999886433     22233 267888999999999988 8888887630            0 


Q ss_pred             ------------HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          529 ------------IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       529 ------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                                  ..++++ .-.|+....+..++++|...|+|++|.++.+.+.+.+
T Consensus       667 c~~~~~~e~~e~~a~~l~-~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g  721 (857)
T PLN03077        667 CRIHRHVELGELAAQHIF-ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG  721 (857)
T ss_pred             HHHcCChHHHHHHHHHHH-hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence                        011111 1224445667888999999999999999988876653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=4.8e-18  Score=150.85  Aligned_cols=362  Identities=17%  Similarity=0.129  Sum_probs=269.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC-
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD-  197 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-  197 (581)
                      ..+...+..+.+.|.|+.|+..|+..++.          .|... +-.+|..|++..|+-++-.+.|.+++.+-....+ 
T Consensus       277 kil~nigvtfiq~gqy~dainsfdh~m~~----------~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd  345 (840)
T KOG2003|consen  277 KILNNIGVTFIQAGQYDDAINSFDHCMEE----------APNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD  345 (840)
T ss_pred             HHHhhcCeeEEecccchhhHhhHHHHHHh----------CccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence            34666777888999999999999988775          33333 3345666777778877777777776653211111 


Q ss_pred             ------CcchH--------------------------------------------------------------HHHHHHH
Q 008016          198 ------DEPLL--------------------------------------------------------------DAILLHM  209 (581)
Q Consensus       198 ------~~~~~--------------------------------------------------------------~~~~~~l  209 (581)
                            ++|..                                                              ...-.+.
T Consensus       346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~k  425 (840)
T KOG2003|consen  346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINK  425 (840)
T ss_pred             cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhH
Confidence                  11100                                                              0001122


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      +.-+.+.|+++.|++.+.-.-       ..+......+-.+|..+++.+  .++.+|..+...++.+        +...+
T Consensus       426 a~~~lk~~d~~~aieilkv~~-------~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~  490 (840)
T KOG2003|consen  426 AGELLKNGDIEGAIEILKVFE-------KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DRYNA  490 (840)
T ss_pred             HHHHHhccCHHHHHHHHHHHH-------hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCH
Confidence            334566677777776553221       124444455667777777764  4788999999888877        44557


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (581)
                      .++.+-|++-+..|++++|.+.|++++.        ++.....+++++|..+..+|+.++|+++|-+.-.+....     
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn-----  557 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN-----  557 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh-----
Confidence            7888999999999999999999999985        456778899999999999999999999999988776542     


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (581)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (581)
                           +.++..++.+|..+.+..+|++++.++..+.        |....++..||.+|-+.|+-.+|.+++-.....   
T Consensus       558 -----~evl~qianiye~led~aqaie~~~q~~sli--------p~dp~ilskl~dlydqegdksqafq~~ydsyry---  621 (840)
T KOG2003|consen  558 -----AEVLVQIANIYELLEDPAQAIELLMQANSLI--------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY---  621 (840)
T ss_pred             -----HHHHHHHHHHHHHhhCHHHHHHHHHHhcccC--------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccc---
Confidence                 5567889999999999999999999876652        333457888999999999999999988766553   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  527 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~  527 (581)
                           -|....+...||..|....-+++|+.+|+++.-+.        |........++.++.+.|++. +|.++|+..-
T Consensus       622 -----fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc~rrsgnyq-ka~d~yk~~h  687 (840)
T KOG2003|consen  622 -----FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASCFRRSGNYQ-KAFDLYKDIH  687 (840)
T ss_pred             -----cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHHHHhcccHH-HHHHHHHHHH
Confidence                 35556677889999999999999999999985543        666677788999999999999 9998888765


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          528 RIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      .        ..|+..+++.-|.++....|-
T Consensus       688 r--------kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  688 R--------KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             H--------hCccchHHHHHHHHHhccccc
Confidence            4        246777888888877777764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=1.2e-17  Score=148.80  Aligned_cols=349  Identities=14%  Similarity=0.075  Sum_probs=253.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHH-------HHHHhcCCCChhHHHH-------------HHHHHHHHHHcCChHH
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAV-------KEQINAGNKGIEEVAI-------------LDIIALGYVYIGDLKF  180 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~  180 (581)
                      ++-.|..+.+.|..+.|++.|..++...       .+.. ....+.+....             -.-++.++......++
T Consensus       167 lYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~-~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e  245 (559)
T KOG1155|consen  167 LYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELS-ELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEE  245 (559)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHH-HhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHH
Confidence            6677788889999999999998876521       1110 00011111111             1223444444445555


Q ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016          181 VQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR  260 (581)
Q Consensus       181 A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  260 (581)
                      +..-.+....+      ..|.....-...|.+...+.++++|+..|+...+-        +|-...-.-...++++-..+
T Consensus       246 ~~~k~e~l~~~------gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--------DPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  246 ALQKKERLSSV------GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--------DPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHhc------cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcchhHHHHhHHHHHHhh
Confidence            55544443332      22444444567788899999999999999988762        33223333333444444433


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (581)
                      -.+-.-+.+.+..+        +...+.+...+|+.|.-.++.++|+.+|++++++        +|....+|..+|.-|.
T Consensus       312 ~skLs~LA~~v~~i--------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyv  375 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNI--------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYV  375 (559)
T ss_pred             hHHHHHHHHHHHHh--------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHH
Confidence            22222222333333        2334556778899999999999999999999987        6788899999999999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (581)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (581)
                      ...+...|++.|+.|+++.+          .-..+|+.||+.|..++-..=|+-+|++|...        .|.....+..
T Consensus       376 EmKNt~AAi~sYRrAvdi~p----------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~a  437 (559)
T KOG1155|consen  376 EMKNTHAAIESYRRAVDINP----------RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVA  437 (559)
T ss_pred             HhcccHHHHHHHHHHHhcCc----------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHH
Confidence            99999999999999999832          22678899999999999999999999999886        3445568889


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE  500 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  500 (581)
                      ||.+|.+.++.++|+.+|.+++...        .....++..||.+|.+.++..+|..+|++.++.. ..-|...+.+..
T Consensus       438 LG~CY~kl~~~~eAiKCykrai~~~--------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~k  508 (559)
T KOG1155|consen  438 LGECYEKLNRLEEAIKCYKRAILLG--------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIK  508 (559)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHH
Confidence            9999999999999999999999841        1234688999999999999999999999999866 344566677888


Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          501 ALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                      +...|+.-+.+.++++ +|-.+..+++.
T Consensus       509 a~~fLA~~f~k~~~~~-~As~Ya~~~~~  535 (559)
T KOG1155|consen  509 ARLFLAEYFKKMKDFD-EASYYATLVLK  535 (559)
T ss_pred             HHHHHHHHHHhhcchH-HHHHHHHHHhc
Confidence            8888999999999999 88777766654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.2e-18  Score=157.35  Aligned_cols=279  Identities=15%  Similarity=0.185  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (581)
                      ..+..+.+...+..++..++|.+-.++.+..++.          .|-+..++..-.-++...|+..+-..+-.++.+   
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~---  306 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD---  306 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH---
Confidence            3456667889999999999999999999999887          555555554444488888877665554444433   


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                          ..|..+..|+.+|..|...|++.+|.++|.++..+        ++..+.+|...|..+...|..++|+..|..|-+
T Consensus       307 ----~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar  374 (611)
T KOG1173|consen  307 ----LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR  374 (611)
T ss_pred             ----hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHH
Confidence                34777778999999999999999999999999775        345678899999999999999999999999988


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (581)
                      +...        ...-...+|.-|...++++-|..+|.+|+.++        |.....+..+|.+.+..+.|.+|..+|+
T Consensus       375 l~~G--------~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~  438 (611)
T KOG1173|consen  375 LMPG--------CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQ  438 (611)
T ss_pred             hccC--------CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence            8432        12234567899999999999999999999873        4455678899999999999999999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH
Q 008016          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE  433 (581)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  433 (581)
                      .++...+..   .+....+..++.+||.++.+++++++|+..+++++...        |..+.++..+|-+|..+|+++.
T Consensus       439 ~~l~~ik~~---~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--------~k~~~~~asig~iy~llgnld~  507 (611)
T KOG1173|consen  439 KALEVIKSV---LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--------PKDASTHASIGYIYHLLGNLDK  507 (611)
T ss_pred             HHHHHhhhc---cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--------CCchhHHHHHHHHHHHhcChHH
Confidence            999776663   34444566678999999999999999999999999873        5556788999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008016          434 AERLLRICLDI  444 (581)
Q Consensus       434 A~~~~~~al~~  444 (581)
                      |+++|.+++.+
T Consensus       508 Aid~fhKaL~l  518 (611)
T KOG1173|consen  508 AIDHFHKALAL  518 (611)
T ss_pred             HHHHHHHHHhc
Confidence            99999999985

>PLN03077 Protein ECB2; Provisional

Probab=99.83  E-value=1.9e-17  Score=175.64  Aligned_cols=368  Identities=13%  Similarity=0.059  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +......|.+.|++++|..+|+++.             ..+..+++.+...|.+.|++++|..++.++....     -.|
T Consensus       225 ~n~Li~~y~k~g~~~~A~~lf~~m~-------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-----~~P  286 (857)
T PLN03077        225 VNALITMYVKCGDVVSARLVFDRMP-------------RRDCISWNAMISGYFENGECLEGLELFFTMRELS-----VDP  286 (857)
T ss_pred             HhHHHHHHhcCCCHHHHHHHHhcCC-------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCC
Confidence            3455677888899999988888752             2234578888888888888888888888876531     112


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      +. .++..+...+...|+.+.|.+++..+.+..       ......+++.+...|.+.|++++|.++|++...       
T Consensus       287 d~-~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------  351 (857)
T PLN03077        287 DL-MTITSVISACELLGDERLGREMHGYVVKTG-------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------  351 (857)
T ss_pred             Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Confidence            22 123444444455555555555555444321       011134455555555555555555555544210       


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------------------HHcCCCCchHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT----------------------------KVYGENDGRVGMAM  332 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~  332 (581)
                         + ...+|+.+...|.+.|++++|.++|+++.+..-                            ............++
T Consensus       352 ---~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~  427 (857)
T PLN03077        352 ---K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA  427 (857)
T ss_pred             ---C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence               0 123455555555555555555555554432100                            00000111223455


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (581)
                      +.|...|.+.|++++|.++|+++.+         ++    ..+|+.+...|...|+.++|+.+|++.+..    ..++..
T Consensus       428 n~Li~~y~k~g~~~~A~~vf~~m~~---------~d----~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~  490 (857)
T PLN03077        428 NALIEMYSKCKCIDKALEVFHNIPE---------KD----VISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSV  490 (857)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhCCC---------CC----eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHh
Confidence            6666777777777777777665321         11    124466667777777777777777776531    111111


Q ss_pred             HHH-------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016          413 SFV-------------------------------THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (581)
Q Consensus       413 ~~~-------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (581)
                      ...                               ..++.|...|.+.|+.++|...|+..           .+ ...+|.
T Consensus       491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----------~~-d~~s~n  558 (857)
T PLN03077        491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----------EK-DVVSWN  558 (857)
T ss_pred             HHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----------CC-ChhhHH
Confidence            110                               11234456777777777777766553           12 234788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 008016          462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV  541 (581)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~  541 (581)
                      .+...|...|+.++|.++|+++.+.   ...|+.    .++..+...+.+.|..+ +|..+|+...+.+    + -.|+ 
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~----~T~~~ll~a~~~~g~v~-ea~~~f~~M~~~~----g-i~P~-  624 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVES---GVNPDE----VTFISLLCACSRSGMVT-QGLEYFHSMEEKY----S-ITPN-  624 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCc----ccHHHHHHHHhhcChHH-HHHHHHHHHHHHh----C-CCCc-
Confidence            8999999999999999999987652   222333    45677778899999999 9999998876432    1 1233 


Q ss_pred             HHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          542 MLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       542 ~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      ...+..+..+|.+.|++++|.++++++
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            477899999999999999999999885

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.82  E-value=4.9e-16  Score=147.44  Aligned_cols=395  Identities=17%  Similarity=0.116  Sum_probs=279.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (581)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (581)
                      .....+...|++..+.+.|++++..          .......++.++.+|...|.-..|+.+++......+    ..++.
T Consensus       328 ~Lt~al~~~g~f~~lae~fE~~~~~----------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----~ps~~  393 (799)
T KOG4162|consen  328 HLTFALSRCGQFEVLAEQFEQALPF----------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----QPSDI  393 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHh----------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc----CCCcc
Confidence            3445667889999999999998765          455667899999999999999999999988655432    22223


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc----CC-------HHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI----GR-------AKKAVEIYHRV  271 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~-------~~~A~~~~~~a  271 (581)
                      ...+..-..++...|.+++++.+..+++......   .......++..+|.+|..+    ..       ..+++..++++
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a  470 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA  470 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence            3333444455667899999999999999976432   3334566777777777644    22       33455555555


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Q 008016          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (581)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (581)
                      ++.        ++....+.+.++.-|..+++.+.|..+..+++++.       ....+.+|..++.++...+++.+|+.+
T Consensus       471 v~~--------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~v  535 (799)
T KOG4162|consen  471 VQF--------DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDV  535 (799)
T ss_pred             Hhc--------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence            554        33344778899999999999999999999999862       335678899999999999999999999


Q ss_pred             HHHHHHHHHhhccCC----------CCChHHHHHHHH-H----------------------HHHHHHcCChHHHHHHHHH
Q 008016          352 YKKALRVIKDSNYMS----------LDDSIMENMRID-L----------------------AELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       352 ~~~al~~~~~~~~~~----------~~~~~~~~~~~~-l----------------------a~~~~~~g~~~~A~~~~~~  398 (581)
                      .+.++.-........          .+......+... |                      +.+....++..+|.+...+
T Consensus       536 vd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~  615 (799)
T KOG4162|consen  536 VDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY  615 (799)
T ss_pred             HHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence            999988754310000          000000000000 0                      0001111233444444444


Q ss_pred             HHHHHHHh---c-------------CCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016          399 CLLITEKY---K-------------GKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (581)
Q Consensus       399 al~~~~~~---~-------------~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (581)
                      +.......   .             +++++.  ....+...+..+...++.++|..++.++-.+        .|.....+
T Consensus       616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~  687 (799)
T KOG4162|consen  616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVY  687 (799)
T ss_pred             HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHH
Confidence            43333211   0             111111  2235556788888999999999999888775        46777888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH--HHHHHHHHHHHhcCCCC
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE--LLKRVLRIQEREFGSES  538 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~--~~~~a~~~~~~~~~~~~  538 (581)
                      +..|.++...|++.+|...|..++.+.     |+|+   .+...+|.++...|+.. -|..  ++..++++        +
T Consensus       688 ~~~G~~~~~~~~~~EA~~af~~Al~ld-----P~hv---~s~~Ala~~lle~G~~~-la~~~~~L~dalr~--------d  750 (799)
T KOG4162|consen  688 YLRGLLLEVKGQLEEAKEAFLVALALD-----PDHV---PSMTALAELLLELGSPR-LAEKRSLLSDALRL--------D  750 (799)
T ss_pred             HHhhHHHHHHHhhHHHHHHHHHHHhcC-----CCCc---HHHHHHHHHHHHhCCcc-hHHHHHHHHHHHhh--------C
Confidence            999999999999999999999998764     6666   67888999999999887 6666  88888874        4


Q ss_pred             HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          539 EEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       539 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      |.+..+|+.+|.++.++|+.++|.++|.-++.+.+.
T Consensus       751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            677889999999999999999999999999988654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.82  E-value=5.1e-17  Score=156.64  Aligned_cols=349  Identities=18%  Similarity=0.139  Sum_probs=259.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      ...+...|+..+..|++++|..++.++++..       |....++..||.+|..+|+.+++...+-.|-.+     .+.+
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-----~p~d  206 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-----NPKD  206 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCC
Confidence            4556677778888899999999999987765       666778999999999999999999888776554     2222


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                         ...|..++.....+|++.+|.-+|.+|++.        .|.........+.+|.+.|+...|...|.+++....   
T Consensus       207 ---~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---  272 (895)
T KOG2076|consen  207 ---YELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---  272 (895)
T ss_pred             ---hHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---
Confidence               377889999999999999999999999998        566678888899999999999999999999988632   


Q ss_pred             CCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          322 GENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       322 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                       +.+. .........+..+...++-+.|++.++.++......    ..    ...++.++.++.....++.|........
T Consensus       273 -~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~----~ed~ni~ael~l~~~q~d~~~~~i~~~~  343 (895)
T KOG2076|consen  273 -PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----AS----LEDLNILAELFLKNKQSDKALMKIVDDR  343 (895)
T ss_pred             -chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----cc----ccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence             1111 123334455777888888899999999998832211    11    1223567888999999999888776544


Q ss_pred             HHHHH------------------h--cCCC-ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016          401 LITEK------------------Y--KGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (581)
Q Consensus       401 ~~~~~------------------~--~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (581)
                      ....+                  .  .+.+ .+....+...++.+..+.++..+++..+..--.       ....+....
T Consensus       344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n-------~~~~d~~dL  416 (895)
T KOG2076|consen  344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDN-------VWVSDDVDL  416 (895)
T ss_pred             ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhc-------CChhhhHHH
Confidence            40000                  0  0111 111222355555566666666666655433211       112345668


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016          460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  539 (581)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~  539 (581)
                      +..++.++...|++.+|+.++......       ........+..+|.+|..+|.++ +|++.|++++..        .|
T Consensus       417 ~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~~~~~~vw~~~a~c~~~l~e~e-~A~e~y~kvl~~--------~p  480 (895)
T KOG2076|consen  417 YLDLADALTNIGKYKEALRLLSPITNR-------EGYQNAFVWYKLARCYMELGEYE-EAIEFYEKVLIL--------AP  480 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhcC-------ccccchhhhHHHHHHHHHHhhHH-HHHHHHHHHHhc--------CC
Confidence            899999999999999999999987652       12233568999999999999999 999999999984        47


Q ss_pred             HHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          540 EVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       540 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      +..++...|+.+|..+|+.++|.+.+.+.
T Consensus       481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~  509 (895)
T KOG2076|consen  481 DNLDARITLASLYQQLGNHEKALETLEQI  509 (895)
T ss_pred             CchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence            77888999999999999999999988874

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.81  E-value=2.8e-16  Score=134.70  Aligned_cols=320  Identities=16%  Similarity=0.093  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ..+..-+..+..++..|++..|+..|..+++.          +|..-.+++..|.+|..+|+-..|+.-+.+++++.   
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~----------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---  102 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG----------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---  102 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---
Confidence            34556788999999999999999999999876          89999999999999999999999999999987764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                          |+...+-...|.++.++|++++|+.-|..+++.........       .......+......+...|+...|+.+.
T Consensus       103 ----pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  103 ----PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI  178 (504)
T ss_pred             ----ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence                77777778889999999999999999999987421100000       0011223444556667789999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH
Q 008016          269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  348 (581)
Q Consensus       269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  348 (581)
                      ...+++        .|..+..+...+.+|...|+...|+.-++.+-++        ..+....++.++.+++..|+.+.+
T Consensus       179 ~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--------s~DnTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  179 THLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--------SQDNTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHhhhhHHHH
Confidence            999987        6777888888999999999999999999888765        234457788899999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH---------HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Q 008016          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL---------LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLL  419 (581)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~---------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  419 (581)
                      +...++++++       +|++......|-.+-.+         ....++|.++++..++.++.-.    ...+.......
T Consensus       243 L~~iRECLKl-------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep----~~~~ir~~~~r  311 (504)
T KOG0624|consen  243 LKEIRECLKL-------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP----EETMIRYNGFR  311 (504)
T ss_pred             HHHHHHHHcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC----cccceeeeeeh
Confidence            9999999985       66665544444433332         3344555555555555444310    11222344556


Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .+..|+..-|++.+|+....+++++        .|+.+.++...+.+|.....|+.|+.-|+++.+..
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            6788999999999999999999984        67788899999999999999999999999998854

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=5.8e-16  Score=157.34  Aligned_cols=363  Identities=12%  Similarity=-0.007  Sum_probs=249.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .|..+...+..+.+..+.|+++.|+..|+++++..       |........+..++...|+.++|+.++++++.      
T Consensus        30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------P~~~~av~dll~l~~~~G~~~~A~~~~eka~~------   96 (822)
T PRK14574         30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS------   96 (822)
T ss_pred             CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc------
Confidence            56677788888999999999999999999987764       22211112677777788999999999999982      


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                        ..+.....+..+|.++...|++++|++.|+++++.        .|....++..++.++...++.++|+..++++... 
T Consensus        97 --p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-  165 (822)
T PRK14574         97 --SMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-  165 (822)
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-
Confidence              11222445556688999999999999999999987        4555667778899999999999999999988764 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH---
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE---  394 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---  394 (581)
                             .|.... +..++.++...++..+|+..++++++..       |+.....   ..+..++...|-...|.+   
T Consensus       166 -------dp~~~~-~l~layL~~~~~~~~~AL~~~ekll~~~-------P~n~e~~---~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        166 -------DPTVQN-YMTLSYLNRATDRNYDALQASSEAVRLA-------PTSEEVL---KNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             -------CcchHH-HHHHHHHHHhcchHHHHHHHHHHHHHhC-------CCCHHHH---HHHHHHHHHcCCcHHHHHHHH
Confidence                   333222 3455666666788877999999988752       2222211   111112222221111111   


Q ss_pred             --------------------------------------HHHHHHHHHHHhc-----------------------------
Q 008016          395 --------------------------------------LLEECLLITEKYK-----------------------------  407 (581)
Q Consensus       395 --------------------------------------~~~~al~~~~~~~-----------------------------  407 (581)
                                                            ..++++......+                             
T Consensus       228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r  307 (822)
T PRK14574        228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ  307 (822)
T ss_pred             hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence                                                  1111221111111                             


Q ss_pred             --------------CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 008016          408 --------------GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (581)
Q Consensus       408 --------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (581)
                                    +..-|..  +....|..|...+++++|+.+|++++.-....  ...+........|...|...+++
T Consensus       308 ~~~vi~~y~~l~~~~~~~P~y--~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--~~~~~~~~~~~~L~yA~ld~e~~  383 (822)
T PRK14574        308 TADLIKEYEAMEAEGYKMPDY--ARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--FRNSDDLLDADDLYYSLNESEQL  383 (822)
T ss_pred             HHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--cCCCcchHHHHHHHHHHHhcccH
Confidence                          1111222  34456778888888888888888876521000  01122233345778889999999


Q ss_pred             HHHHHHHHHHHHHHH---HHc----CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 008016          474 KEAEKLVLEALYIRE---IAF----GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLK  546 (581)
Q Consensus       474 ~~A~~~~~~a~~~~~---~~~----~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  546 (581)
                      ++|..++++..+...   ..+    ...+|+.......++.++...|+.. +|++.+++.+..        .|.+...+.
T Consensus       384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~-~Ae~~le~l~~~--------aP~n~~l~~  454 (822)
T PRK14574        384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP-TAQKKLEDLSST--------APANQNLRI  454 (822)
T ss_pred             HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHH
Confidence            999999999876221   001    1356777888889999999999999 999999998763        366677888


Q ss_pred             HHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          547 KVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       547 ~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      .+|.++..+|.+.+|...++.+..+.+..
T Consensus       455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~  483 (822)
T PRK14574        455 ALASIYLARDLPRKAEQELKAVESLAPRS  483 (822)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence            99999999999999999999988886653

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.80  E-value=7.6e-15  Score=158.11  Aligned_cols=395  Identities=12%  Similarity=0.014  Sum_probs=277.7

Q ss_pred             ccchHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          110 GMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS  189 (581)
Q Consensus       110 ~~~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  189 (581)
                      ...+.......+...+..+...|++..+..+++..-...         ....+......+.++...|++++|...+..+.
T Consensus       366 ~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~---------~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~  436 (903)
T PRK04841        366 AAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV---------LLENPRLVLLQAWLAQSQHRYSEVNTLLARAE  436 (903)
T ss_pred             HCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH---------HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            334444444445666677777888777666554421100         01112234566777888999999999999876


Q ss_pred             HHHhhcC-CCc-chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008016          190 GIVDSLK-DDE-PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI  267 (581)
Q Consensus       190 ~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (581)
                      ....... ... .........++.++...|++++|..++++++....   ..+......+...+|.++...|++++|...
T Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~  513 (903)
T PRK04841        437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAM  513 (903)
T ss_pred             HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6543321 111 12344455678889999999999999999987421   112223455678899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHH
Q 008016          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE  347 (581)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  347 (581)
                      +++++...... + +......++..+|.++...|++++|...+++++.......+...+.....+..+|.++...|++++
T Consensus       514 ~~~al~~~~~~-g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~  591 (903)
T PRK04841        514 MQQTEQMARQH-D-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE  591 (903)
T ss_pred             HHHHHHHHhhh-c-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999987653 2 223345677889999999999999999999999988775433334445556788999999999999


Q ss_pred             HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHH
Q 008016          348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYS  426 (581)
Q Consensus       348 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~  426 (581)
                      |...+.+++......   +  +......+..++.++...|++++|...++++..+....  ...... ..........+.
T Consensus       592 A~~~~~~al~~~~~~---~--~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~  664 (903)
T PRK04841        592 AEQCARKGLEVLSNY---Q--PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--RYHSDWIANADKVRLIYWQ  664 (903)
T ss_pred             HHHHHHHhHHhhhcc---C--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccHhHhhHHHHHHHHHHH
Confidence            999999999986642   2  22334566789999999999999999999998875442  111111 111111234456


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  506 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  506 (581)
                      ..|+.+.|..++......   .. ............++.++...|++++|...+++++...+..  ........++..+|
T Consensus       665 ~~g~~~~A~~~l~~~~~~---~~-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~--g~~~~~a~~~~~la  738 (903)
T PRK04841        665 MTGDKEAAANWLRQAPKP---EF-ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL--RLMSDLNRNLILLN  738 (903)
T ss_pred             HCCCHHHHHHHHHhcCCC---CC-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CchHHHHHHHHHHH
Confidence            689999998887664431   00 0111112234678999999999999999999999976543  23345667888999


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016          507 SIQTRLGEDDTKLLELLKRVLRIQER  532 (581)
Q Consensus       507 ~~~~~~g~~~~~A~~~~~~a~~~~~~  532 (581)
                      .++...|+.. +|...+.+++++...
T Consensus       739 ~a~~~~G~~~-~A~~~L~~Al~la~~  763 (903)
T PRK04841        739 QLYWQQGRKS-EAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHcCCHH-HHHHHHHHHHHHhCc
Confidence            9999999999 999999999988744

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=8.7e-18  Score=142.88  Aligned_cols=281  Identities=15%  Similarity=0.168  Sum_probs=224.1

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      +...|...|-......+++-.............-.--..+|.||.+.|-+.+|...++..+...     .   ..+.+..
T Consensus       190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~-----~---~~dTfll  261 (478)
T KOG1129|consen  190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF-----P---HPDTFLL  261 (478)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC-----C---chhHHHH
Confidence            4556777777666666554332211111222333445689999999999999999999876653     1   2245678


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      ++.+|....+...|+..+.+.++.        .|.....+..++.++..++++++|.++|+.+++.        ++..+.
T Consensus       262 LskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvE  325 (478)
T KOG1129|consen  262 LSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVE  325 (478)
T ss_pred             HHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccce
Confidence            999999999999999999998874        3455778889999999999999999999999987        566677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      +...+|.-|+..++.+-|+.+|++.+.+.     -   .....+.++|.++...++++-++..|++++....       .
T Consensus       326 aiAcia~~yfY~~~PE~AlryYRRiLqmG-----~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-------~  390 (478)
T KOG1129|consen  326 AIACIAVGYFYDNNPEMALRYYRRILQMG-----A---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-------Q  390 (478)
T ss_pred             eeeeeeeccccCCChHHHHHHHHHHHHhc-----C---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-------C
Confidence            88888999999999999999999999872     2   3456789999999999999999999999998753       3


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      +...+.+|+|+|.+....|++.-|..+|+-++..        +++...++++||.+-.+.|+.++|..++..+-..    
T Consensus       391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~----  458 (478)
T KOG1129|consen  391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV----  458 (478)
T ss_pred             cchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh----
Confidence            4556788999999999999999999999987753        5667789999999999999999999999988764    


Q ss_pred             cCCCCcchHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLG  464 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la  464 (581)
                          .|+..+...+++
T Consensus       459 ----~P~m~E~~~Nl~  470 (478)
T KOG1129|consen  459 ----MPDMAEVTTNLQ  470 (478)
T ss_pred             ----Ccccccccccee
Confidence                355444444444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=6.5e-15  Score=125.58  Aligned_cols=305  Identities=14%  Similarity=0.143  Sum_probs=233.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (581)
                      +-.+..+.-..+.++|++.|-.+++.          ++...++...||..|...|..+.|+.+.+.+...-+   -....
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~----------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd---lT~~q  105 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQE----------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD---LTFEQ  105 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhc----------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---CchHH
Confidence            34555667788999999999999875          888999999999999999999999999988765421   11223


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      ...++..+|.-|...|-++.|+..|....+.        ......++..|..+|....+|++|++..++..++..+   +
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~  174 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---T  174 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---c
Confidence            4556889999999999999999999987653        2334677889999999999999999999887776322   2


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      .....+..+..|+..+....+.+.|...+.++++.        +|..+.+-..+|.++...|+|..|++.++.+++.   
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---  243 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---  243 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence            35567888999999999999999999999999975        5667778888999999999999999999998774   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                            ++..+..+...|..+|...|+.++.+..+.++.+...      .+   .....++.+-....-.+.|..++.+-
T Consensus       244 ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~~Aq~~l~~Q  308 (389)
T COG2956         244 ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGIDAAQAYLTRQ  308 (389)
T ss_pred             ------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChHHHHHHHHHH
Confidence                  5667777888999999999999999999999887632      11   23334455555566667777776665


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHH
Q 008016          442 LDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALY  485 (581)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~  485 (581)
                      +.        .+|... ..+.+......   -|...+....++.++.
T Consensus       309 l~--------r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         309 LR--------RKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             Hh--------hCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            55        356654 34444433332   2445555556665554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.77  E-value=1.9e-18  Score=157.99  Aligned_cols=267  Identities=23%  Similarity=0.239  Sum_probs=110.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (581)
                      ..+|.++...|++++|++.+.+.+...      ..+.....+..+|.+....++++.|+..|++++..-        +..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~   77 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN   77 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence            356999999999999999997665431      124455778889999999999999999999998752        223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (581)
                      ...+..++.+ ...+++++|..+++++.+..       +++    ..+.....++...|+++++...++++...      
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-------~~~----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------  139 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD-------GDP----RYLLSALQLYYRLGDYDEAEELLEKLEEL------  139 (280)
T ss_dssp             ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred             cccccccccc-cccccccccccccccccccc-------ccc----chhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence            4456667766 68899999999998876642       122    22345667889999999999999987642      


Q ss_pred             CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (581)
                      ...+.....+..+|.++.+.|+.++|+..++++++.        .|+...+...++.++...|+++++.+.++...... 
T Consensus       140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-  210 (280)
T PF13429_consen  140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-  210 (280)
T ss_dssp             T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence            223455678889999999999999999999999996        45556677889999999999999888888776643 


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          489 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       489 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                          +++|   ..+..+|.++...|+++ +|+.++++++..        +|+...++..+|.++...|+.++|..+++++
T Consensus       211 ----~~~~---~~~~~la~~~~~lg~~~-~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  211 ----PDDP---DLWDALAAAYLQLGRYE-EALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             ----HTSC---CHCHHHHHHHHHHT-HH-HHHHHHHHHHHH--------STT-HHHHHHHHHHHT---------------
T ss_pred             ----cCHH---HHHHHHHHHhccccccc-cccccccccccc--------ccccccccccccccccccccccccccccccc
Confidence                3344   34678899999999999 999999998874        4666778889999999999999999999998


Q ss_pred             HHHH
Q 008016          569 SNLR  572 (581)
Q Consensus       569 ~~l~  572 (581)
                      +..-
T Consensus       275 ~~~l  278 (280)
T PF13429_consen  275 LRLL  278 (280)
T ss_dssp             ----
T ss_pred             cccc
Confidence            7653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=3e-15  Score=131.70  Aligned_cols=277  Identities=15%  Similarity=0.156  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      +.....+..+|.+++..|++++|+..|+++..+        +|.........|.++...|++++-..+....+.+-.   
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~---  297 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK---  297 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh---
Confidence            345677889999999999999999999999877        788888888899999999999998887777766521   


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                           ....-|..-+...+..+++..|+.+-+++++.-.       .+   ...+...|.++...|+.++|.-.|+.|..
T Consensus       298 -----~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-------r~---~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  298 -----YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-------RN---HEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             -----cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-------cc---chHHHhccHHHHhccchHHHHHHHHHHHh
Confidence                 2334455567778889999999999999998622       22   33457789999999999999999999987


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHH-cCChHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG-ITLYH-LNRDKEAEKL  479 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~  479 (581)
                      +.        |....+|..|..+|...|++.+|......++..+        +..+.++.-+| .++.. -.--++|.++
T Consensus       363 La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  363 LA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--------QNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             cc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--------hcchhhhhhhcceeeccCchhHHHHHHH
Confidence            74        5667899999999999999999999998888764        33345555554 33332 3345789999


Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016          480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  559 (581)
Q Consensus       480 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  559 (581)
                      +++++.+.        |.+..+...++.++...|.+. .++.++++.+..+        ++ ...+..||+++...+.+.
T Consensus       427 ~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~-D~i~LLe~~L~~~--------~D-~~LH~~Lgd~~~A~Ne~Q  488 (564)
T KOG1174|consen  427 AEKSLKIN--------PIYTPAVNLIAELCQVEGPTK-DIIKLLEKHLIIF--------PD-VNLHNHLGDIMRAQNEPQ  488 (564)
T ss_pred             HHhhhccC--------CccHHHHHHHHHHHHhhCccc-hHHHHHHHHHhhc--------cc-cHHHHHHHHHHHHhhhHH
Confidence            99998753        777788899999999999999 9999999999864        22 356789999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhh
Q 008016          560 EKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       560 ~A~~~~~~a~~l~~~~~~~  578 (581)
                      +|.+.|..|+.+.|+.+.+
T Consensus       489 ~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  489 KAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             HHHHHHHHHHhcCccchHH
Confidence            9999999999998876543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.77  E-value=4.4e-15  Score=127.50  Aligned_cols=320  Identities=14%  Similarity=0.143  Sum_probs=246.8

Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      .|.-+.-...+|.-+...|++..|+..|..|++        .+|....+++..|.+|...|+-.-|+.-+.+++++    
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve--------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel----  101 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVE--------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL----  101 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc--------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence            344555578899999999999999999999987        35667888999999999999999999999999998    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH------------HHHHHHHHHHCCCHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA------------MCSLAHAKCANGNAE  346 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~  346 (581)
                          .|+...+....|.++.++|++++|+.-|..++..-     ++......+            +......+...|+..
T Consensus       102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~  172 (504)
T KOG0624|consen  102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQ  172 (504)
T ss_pred             ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchh
Confidence                78888899999999999999999999999998741     111112222            223344456789999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016          347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (581)
Q Consensus       347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (581)
                      .|+++....+++          .++-+..+...+.+|...|++..|+.-++.+-.+.        .+....++.++.++.
T Consensus       173 ~ai~~i~~llEi----------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--------~DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  173 NAIEMITHLLEI----------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--------QDNTEGHYKISQLLY  234 (504)
T ss_pred             hHHHHHHHHHhc----------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHH
Confidence            999999998887          23335566788999999999999999998876653        233467888999999


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH---------HHHHHHcCChHHHHHHHHHHHHHHHHHcCCC-Ch
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL---------GITLYHLNRDKEAEKLVLEALYIREIAFGKD-SL  496 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~  496 (581)
                      ..|+.+.++...++.+.+     .|+|......|..+         +.-....++|.++++..++.++..     |. .+
T Consensus       235 ~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e-----p~~~~  304 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE-----PEETM  304 (504)
T ss_pred             hhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-----Ccccc
Confidence            999999999999988874     45554333333222         223345566777777776665522     22 12


Q ss_pred             hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       497 ~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      -.......+..++...|++- +|+....+++++        .|+.+.++...|..|..-..|++|+.-|++|.++.++..
T Consensus       305 ir~~~~r~~c~C~~~d~~~~-eAiqqC~evL~~--------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  305 IRYNGFRVLCTCYREDEQFG-EAIQQCKEVLDI--------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             eeeeeeheeeecccccCCHH-HHHHHHHHHHhc--------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            23344566788999999998 999988888874        578889999999999999999999999999998876544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.4e-14  Score=123.48  Aligned_cols=303  Identities=16%  Similarity=0.163  Sum_probs=226.7

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      .-|.-+.-.++.++|++.|.++++        .++...++...||..|...|..+.|+...+..++.-    +-......
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~  107 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRL  107 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHH
Confidence            345556677899999999999887        356778999999999999999999999887765531    11233456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (581)
                      .++..||.-|+..|-++.|+..|....+.        ......+...|..+|....++++|++..++..++.     ..+
T Consensus       108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~-----~q~  174 (389)
T COG2956         108 LALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG-----GQT  174 (389)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-----Ccc
Confidence            78899999999999999999999987753        23345678889999999999999999998887762     234


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (581)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (581)
                      ....++..+..|+..+....+.+.|+..+.++++.        +|....+-..+|.++...|+|+.|++.++.+++-   
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---  243 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---  243 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---
Confidence            46677888899999999999999999999999876        3556677788999999999999999999999873   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  527 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~  527 (581)
                          ++..+..+...|..+|.+.|+.++....+.++.+...      .+   .....++..-....-.+ .|..++.+-+
T Consensus       244 ----n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~------g~---~~~l~l~~lie~~~G~~-~Aq~~l~~Ql  309 (389)
T COG2956         244 ----NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT------GA---DAELMLADLIELQEGID-AAQAYLTRQL  309 (389)
T ss_pred             ----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC------Cc---cHHHHHHHHHHHhhChH-HHHHHHHHHH
Confidence                4455667888999999999999999999999987541      12   22334444444444444 6666665555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHH---HcCChhhhHHHHHHHH
Q 008016          528 RIQEREFGSESEEVMLTLKKVVSYLD---KLGRKEEKFPLKKRLS  569 (581)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~  569 (581)
                      .        .+|..... +.+.....   ..|+..+.+..++.++
T Consensus       310 ~--------r~Pt~~gf-~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         310 R--------RKPTMRGF-HRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             h--------hCCcHHHH-HHHHHhhhccccccchhhhHHHHHHHH
Confidence            4        24544333 33333322   2345666666666654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=1.4e-17  Score=152.31  Aligned_cols=267  Identities=18%  Similarity=0.166  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .+..|..++..|++++|++.+.+.+...        .++.....+..+|......|+++.|+..++++....    +   
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~--------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~---   75 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKI--------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----K---   75 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccc--------cccccccccccccccccccccccccccccccccccc----c---
Confidence            3456888999999999999997665431        135666788889999999999999999999987653    2   


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      .....+..++.+ ...+++++|..+++++.+..      .   ....+.....++...|+++++...++++...      
T Consensus        76 ~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~---~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------  139 (280)
T PF13429_consen   76 ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------G---DPRYLLSALQLYYRLGDYDEAEELLEKLEEL------  139 (280)
T ss_dssp             ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------
T ss_pred             cccccccccccc-cccccccccccccccccccc------c---ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------
Confidence            223345566666 68999999999998876532      1   1334556677889999999999999987743      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                      ...+.....+..+|.++...|+.++|+..++++++.        .|....+...++.++...|+++++.+.+........
T Consensus       140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~  211 (280)
T PF13429_consen  140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP  211 (280)
T ss_dssp             T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence            123455778899999999999999999999999987        455566777899999999999998888887766532


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                             +++.   .+..+|.++...|++++|+.++++++..        +|....++..+|.++...|+.++|..++++
T Consensus       212 -------~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~--------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  212 -------DDPD---LWDALAAAYLQLGRYEEALEYLEKALKL--------NPDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             -------TSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHH--------STT-HHHHHHHHHHHT--------------
T ss_pred             -------CHHH---HHHHHHHHhccccccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence                   2222   3367899999999999999999998875        355566788999999999999999999999


Q ss_pred             HHHH
Q 008016          441 CLDI  444 (581)
Q Consensus       441 al~~  444 (581)
                      ++..
T Consensus       274 ~~~~  277 (280)
T PF13429_consen  274 ALRL  277 (280)
T ss_dssp             ----
T ss_pred             cccc
Confidence            8764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=7.3e-17  Score=137.34  Aligned_cols=269  Identities=15%  Similarity=0.093  Sum_probs=218.7

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhh-cCCCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDS-LKDDEP--LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (581)
                      +|+..+|...|........++... ....+.  ...+.-..+|.+|...|.+.+|.+.++.++...      .   ..++
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~------~---~~dT  258 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF------P---HPDT  258 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC------C---chhH
Confidence            466677777777666554443211 111111  122334679999999999999999999998742      2   2567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      +..|+.+|....+...|+..+.+.++.        .|..+..+..++.++..++++++|.++|+.+++.        ++.
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~  322 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPI  322 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCc
Confidence            788999999999999999999999886        5667788899999999999999999999999975        556


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (581)
                      .+.+...+|..|+..++++-|+.+|.+.+++       +...+   ..+.|+|.++...+++|-++..|++++....   
T Consensus       323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-------G~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat---  389 (478)
T KOG1129|consen  323 NVEAIACIAVGYFYDNNPEMALRYYRRILQM-------GAQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT---  389 (478)
T ss_pred             cceeeeeeeeccccCCChHHHHHHHHHHHHh-------cCCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc---
Confidence            6677777888999999999999999999997       33333   3458999999999999999999999998752   


Q ss_pred             CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                        .....+.+|+++|.+....|++.-|...|+-++.        .+++...++++||.+-.+.|+.++|..++..+-...
T Consensus       390 --~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  390 --QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             --CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence              3455678999999999999999999999998886        467788899999999999999999999999886543

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=6e-15  Score=141.96  Aligned_cols=314  Identities=15%  Similarity=0.112  Sum_probs=217.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                      ..-|......|+++.|.+.+.++.+..        |.....+...|.++...|++++|..++.++.+..        |..
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~--------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~  151 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHA--------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GND  151 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcC
Confidence            456777788999999999998876631        2224455677899999999999999999987652        222


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          287 -VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       287 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                       ..+....+.++...|++++|...+++.++.        .|....++..++.++...|++++|.+.+.+..+..      
T Consensus       152 ~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~------  217 (409)
T TIGR00540       152 NILVEIARTRILLAQNELHAARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG------  217 (409)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC------
Confidence             223444599999999999999999998875        34555778889999999999999999999887651      


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      ..++............-+...+..+++.+.+.++....    ....+.....+..++..+...|++++|.+.++++++. 
T Consensus       218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~----p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-  292 (409)
T TIGR00540       218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ----PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-  292 (409)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC----CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-
Confidence            12222222221222222233344444455555554432    1112234567888999999999999999999999984 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  525 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~  525 (581)
                          .++++..... ..........++.+++.+.++++++..     |++|. ...+..+|.++.+.|+++ +|.++|++
T Consensus       293 ----~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~-~A~~~le~  360 (409)
T TIGR00540       293 ----LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFI-EAADAFKN  360 (409)
T ss_pred             ----CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHH-HHHHHHHH
Confidence                1222221101 112223344578888888888887643     44443 367889999999999999 99999995


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          526 VLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       526 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      +....      ..|+... +..+|.++.+.|+.++|.++|++++...-.
T Consensus       361 a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~~  402 (409)
T TIGR00540       361 VAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLMLA  402 (409)
T ss_pred             hHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            43322      1233333 458999999999999999999999876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.74  E-value=1.2e-14  Score=139.80  Aligned_cols=318  Identities=11%  Similarity=0.013  Sum_probs=222.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ........|......|+++.|.+.+.++.+.          .|.....+...|.+....|+++.|..++.++.+..    
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----  148 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----  148 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence            3445677888889999999999999887654          44445566677999999999999999999986543    


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      ++.. . .+....+.++...|+++.|...+++.++.     .|++   ..++..++.++...|++++|.+.+.+..+.. 
T Consensus       149 p~~~-l-~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~---~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-  217 (409)
T TIGR00540       149 GNDN-I-LVEIARTRILLAQNELHAARHGVDKLLEM-----APRH---KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-  217 (409)
T ss_pred             CcCc-h-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-
Confidence            2211 1 12344588999999999999999988875     2333   4678889999999999999999998887651 


Q ss_pred             HhcCCCChhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          277 LNRGTESADLV-LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       277 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                          ..++... ........-+...+..+++.+.+.++.+...    ...+.....+..++..+...|++++|.+.++++
T Consensus       218 ----~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~  289 (409)
T TIGR00540       218 ----LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQP----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG  289 (409)
T ss_pred             ----CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCC----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence                1122222 2222222222344444445556665554321    112235677788999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (581)
                      ++.       .|++...... ..........++.+.+++.++++++..     +++|. ...+..+|.++.+.|++++|.
T Consensus       290 l~~-------~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-----p~~~~-~~ll~sLg~l~~~~~~~~~A~  355 (409)
T TIGR00540       290 LKK-------LGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-----DDKPK-CCINRALGQLLMKHGEFIEAA  355 (409)
T ss_pred             Hhh-------CCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-----CCChh-HHHHHHHHHHHHHcccHHHHH
Confidence            986       2333321100 112223344577888888888877652     34443 367888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (581)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (581)
                      ++|+++....      .+|+... +..+|.++.+.|+.++|.+++++++...-
T Consensus       356 ~~le~a~a~~------~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~  401 (409)
T TIGR00540       356 DAFKNVAACK------EQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML  401 (409)
T ss_pred             HHHHHhHHhh------cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            9999533321      2344443 55899999999999999999999987653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.74  E-value=3.3e-14  Score=123.04  Aligned_cols=344  Identities=15%  Similarity=0.061  Sum_probs=255.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (581)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (581)
                      ..-|.-++...++++|+....+.+.....    .......+..+..+...+|.|++++.+--..++.....  .+.....
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~   83 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLL   83 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            33455566777888888777765554321    12333455667778889999999888776666665543  3445667


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      .++.+++..+....++.+++.+-...+.+-....+   ..-......++..+..++.++++++.|+.++++....  .+.
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~  158 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDA  158 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCc
Confidence            88999999999999999999888777665221111   1223456678999999999999999999999987654  333


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (581)
                      .-...++..||..+....++++|.-+..++.++.......+-.......+++.++..+..+|+...|.++.+++.++.-.
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            33567788999999999999999999999999987642122223344556788999999999999999999999998876


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-----HHHHH
Q 008016          406 YKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-----AEKLV  480 (581)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~  480 (581)
                      .  .+.+..+..+..+|++|...|+.+.|..-|++|..++...  ++.-..+.++...+.++....-..+     |+++-
T Consensus       239 ~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n  314 (518)
T KOG1941|consen  239 H--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFN  314 (518)
T ss_pred             h--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            5  5677788899999999999999999999999999987765  2333445567777777766544444     99999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016          481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  527 (581)
Q Consensus       481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~  527 (581)
                      ++++++..++ | ....+......++.+|..+|..+ +-...+.++-
T Consensus       315 ~r~levA~~I-G-~K~~vlK~hcrla~iYrs~gl~d-~~~~h~~ra~  358 (518)
T KOG1941|consen  315 TRLLEVASSI-G-AKLSVLKLHCRLASIYRSKGLQD-ELRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHHh-h-hhHHHHHHHHHHHHHHHhccchh-HHHHHHHHHH
Confidence            9999988766 2 23345677888999999998877 5444444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=5.2e-14  Score=128.68  Aligned_cols=364  Identities=15%  Similarity=0.143  Sum_probs=257.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+.++..++...|+|++|+.--.+..++          .|..+..|..+|..+...|+|++|+..|.+.++..       
T Consensus        38 lySnrsaa~a~~~~~~~al~da~k~~~l----------~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-------  100 (539)
T KOG0548|consen   38 LYSNRSAAYASLGSYEKALKDATKTRRL----------NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-------  100 (539)
T ss_pred             hhcchHHHHHHHhhHHHHHHHHHHHHhc----------CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-------
Confidence            3566777888999999999888888776          88889999999999999999999999998876653       


Q ss_pred             chHHHHHHHHHHHHHhc-----------------cC----HHHHHHHHHHHHHHHHH--------------------H--
Q 008016          200 PLLDAILLHMGSMYSTL-----------------EN----YEKSMLVYQRVINVLES--------------------R--  236 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~-----------------g~----~~~A~~~~~~al~~~~~--------------------~--  236 (581)
                      |.....+..++.++...                 ++    +-.....|...+...+.                    .  
T Consensus       101 ~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~  180 (539)
T KOG0548|consen  101 PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKG  180 (539)
T ss_pred             CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhc
Confidence            33333344444433111                 00    00001111111111000                    0  


Q ss_pred             -----------------cCC------------CCH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          237 -----------------YGK------------TSI------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       237 -----------------~~~------------~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                                       ..+            +..      ..+.....+|...+...++..|++.|..++++.      
T Consensus       181 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~------  254 (539)
T KOG0548|consen  181 VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA------  254 (539)
T ss_pred             CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh------
Confidence                             000            000      134456789999999999999999999999984      


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                         .....+++.+.+|...|.+.+.+.....+++....... +....+.++..+|..|...++++.|+.+|++++.-.+.
T Consensus       255 ---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt  330 (539)
T KOG0548|consen  255 ---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT  330 (539)
T ss_pred             ---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC
Confidence               34567788999999999999999888888776543310 11125566667888999999999999999998865432


Q ss_pred             h-------------------ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016          362 S-------------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (581)
Q Consensus       362 ~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (581)
                      .                   ...+   +....-...-|..++..|+|..|+..|.+++..        .|+....|.+.|
T Consensus       331 ~~~ls~lk~~Ek~~k~~e~~a~~~---pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRA  399 (539)
T KOG0548|consen  331 PDLLSKLKEAEKALKEAERKAYIN---PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRA  399 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC---hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHH
Confidence            0                   0111   111222345688899999999999999998875        477888999999


Q ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Q 008016          423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL  502 (581)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  502 (581)
                      .+|.+.|++..|+.-.+.++++        +|.....|..-|.++..+.+|++|.+.|.++++..        |....+.
T Consensus       400 ac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--------p~~~e~~  463 (539)
T KOG0548|consen  400 ACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--------PSNAEAI  463 (539)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------chhHHHH
Confidence            9999999999999999999885        78889999999999999999999999999998743        5555666


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008016          503 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKK  547 (581)
Q Consensus       503 ~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  547 (581)
                      ..+.++...+.... ...+..+++.         ..|++..++..
T Consensus       464 ~~~~rc~~a~~~~~-~~ee~~~r~~---------~dpev~~il~d  498 (539)
T KOG0548|consen  464 DGYRRCVEAQRGDE-TPEETKRRAM---------ADPEVQAILQD  498 (539)
T ss_pred             HHHHHHHHHhhcCC-CHHHHHHhhc---------cCHHHHHHHcC
Confidence            77777776543333 4444555532         35766655443

>PRK12370 invasion protein regulator; Provisional

Probab=99.74  E-value=1.3e-15  Score=152.18  Aligned_cols=253  Identities=14%  Similarity=0.096  Sum_probs=194.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      +++++|+.++++++++        +|....++..+|.++...         +++++|...+++++++        +|...
T Consensus       275 ~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~  338 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNP  338 (553)
T ss_pred             HHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCH
Confidence            4578999999999987        566778888888877643         3478999999999876        56667


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      .++..+|.++...|++++|+..+++++++       .|++   ..++..+|.++...|++++|+..+++++++.     +
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-------~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P  403 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLL-------SPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----P  403 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C
Confidence            88889999999999999999999999987       3444   3456889999999999999999999999873     3


Q ss_pred             CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREI  489 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (581)
                      .++   .....++.++...|++++|+..+++++..       ..|.....+..+|.++...|++++|...++++..    
T Consensus       404 ~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~----  469 (553)
T PRK12370        404 TRA---AAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST----  469 (553)
T ss_pred             CCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----
Confidence            322   23344555677789999999999998763       2355566788899999999999999999987643    


Q ss_pred             HcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016          490 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  569 (581)
Q Consensus       490 ~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  569 (581)
                          ..|........++..|...|  + +|...+++.++.....  +.+      ...+..+|.-.|+.+.|..+ +++.
T Consensus       470 ----~~~~~~~~~~~l~~~~~~~g--~-~a~~~l~~ll~~~~~~--~~~------~~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        470 ----QEITGLIAVNLLYAEYCQNS--E-RALPTIREFLESEQRI--DNN------PGLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             ----ccchhHHHHHHHHHHHhccH--H-HHHHHHHHHHHHhhHh--hcC------chHHHHHHHHHhhhHHHHHH-HHhh
Confidence                33455566778888888888  4 7777777766644321  111      12267788888998888877 6665


Q ss_pred             HHH
Q 008016          570 NLR  572 (581)
Q Consensus       570 ~l~  572 (581)
                      +-+
T Consensus       534 ~~~  536 (553)
T PRK12370        534 NED  536 (553)
T ss_pred             ccc
Confidence            543

>PRK12370 invasion protein regulator; Provisional

Probab=99.73  E-value=1.3e-15  Score=152.02  Aligned_cols=251  Identities=10%  Similarity=-0.027  Sum_probs=191.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---------GDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (581)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (581)
                      +++++|+.+|+++++.          +|..+.++..+|.++...         +++++|...+++++++.       |..
T Consensus       275 ~~~~~A~~~~~~Al~l----------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-------P~~  337 (553)
T PRK12370        275 YSLQQALKLLTQCVNM----------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-------HNN  337 (553)
T ss_pred             HHHHHHHHHHHHHHhc----------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-------CCC
Confidence            4577999999999877          778888888999887643         34788999999887764       555


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      ..++..+|.++...|++++|+..|++++++.        |....++..+|.++...|++++|+..+++++++        
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--------  401 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS--------PISADIKYYYGWNLFMAGQLEEALQTINECLKL--------  401 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            5678889999999999999999999999862        334667899999999999999999999999998        


Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +|........++.++...|++++|+..+++++..       .+|.....+..+|.++...|++++|...+.+....    
T Consensus       402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-------~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~----  470 (553)
T PRK12370        402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ-------HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ----  470 (553)
T ss_pred             CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-------ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----
Confidence            3444444455666777899999999999998764       23445567888999999999999999999876443    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                            .+.-......++..|...|  ++|...+++.++.....  ..++      ..+..+|.-.|+.+.+..+ +++.
T Consensus       471 ------~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~-~~~~  533 (553)
T PRK12370        471 ------EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI--DNNP------GLLPLVLVAHGEAIAEKMW-NKFK  533 (553)
T ss_pred             ------cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh--hcCc------hHHHHHHHHHhhhHHHHHH-HHhh
Confidence                  2222334567888888888  48888888866654332  1121      2266778888888888776 6654


Q ss_pred             H
Q 008016          443 D  443 (581)
Q Consensus       443 ~  443 (581)
                      +
T Consensus       534 ~  534 (553)
T PRK12370        534 N  534 (553)
T ss_pred             c
Confidence            4

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.73  E-value=2.9e-15  Score=121.84  Aligned_cols=206  Identities=17%  Similarity=0.143  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      .....+...||.-|...|++..|...+++++++        +|....++..++.+|...|+.+.|.+.|++|+.+     
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-----   98 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-----   98 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence            345678889999999999999999999999998        7788899999999999999999999999999987     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                         +|....+++|.|..++.+|++++|...|++++..        |.-.....++.|+|.|-.+.|+++.|.++|+++++
T Consensus        99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063          99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD--------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC--------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence               6777889999999999999999999999999874        55566677889999999999999999999999998


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      ..        |........++......|++..|..++++....        .+..+.++.-..++-...|+-+.|-++=.
T Consensus       168 ~d--------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~--------~~~~A~sL~L~iriak~~gd~~~a~~Y~~  231 (250)
T COG3063         168 LD--------PQFPPALLELARLHYKAGDYAPARLYLERYQQR--------GGAQAESLLLGIRIAKRLGDRAAAQRYQA  231 (250)
T ss_pred             hC--------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc--------ccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            73        333456677899999999999999998886552        22445566666677778899888877766


Q ss_pred             HHHHHH
Q 008016          482 EALYIR  487 (581)
Q Consensus       482 ~a~~~~  487 (581)
                      +....+
T Consensus       232 qL~r~f  237 (250)
T COG3063         232 QLQRLF  237 (250)
T ss_pred             HHHHhC
Confidence            655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=4.2e-14  Score=135.10  Aligned_cols=339  Identities=13%  Similarity=0.014  Sum_probs=232.7

Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      +|+....+..+|.++...|+.+.+...+.++.......     ..........+..+...|++++|...++++++.    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----   72 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAAR-----ATERERAHVEALSAWIAGDLPKALALLEQLLDD----   72 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Confidence            36677788999999999999999988888877754321     123445566788999999999999999999886    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                          .|....++.. +..+...|++..+.....+++..    ..+.++........+|.++...|++++|+..++++++.
T Consensus        73 ----~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~  143 (355)
T cd05804          73 ----YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL  143 (355)
T ss_pred             ----CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                3333344443 55666666655555555555443    24567778888889999999999999999999999997


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                             .|+.   ...+..+|.++...|++++|+.++++++.....    ........+..+|.++..+|++++|+..+
T Consensus       144 -------~p~~---~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         144 -------NPDD---AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             -------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                   3333   345678999999999999999999999876421    11223446778999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHH--HHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          439 RICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      ++++...     +..+.......  .+...+...|....+..+ +.+........ +.+ .....-...+.++...|+.+
T Consensus       210 ~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~~-~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         210 DTHIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PDH-GLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Ccc-cchHHHHHHHHHHhcCCCHH
Confidence            9985421     11111111101  223334445554444333 22222221111 111 12222236788888899988


Q ss_pred             HHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          517 TKLLELLKRVLRIQEREF-GSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       517 ~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                       +|...++......+..- .......+......+.++..+|++++|.+.+.+++.+...++.|
T Consensus       282 -~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs  343 (355)
T cd05804         282 -ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS  343 (355)
T ss_pred             -HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence             99999988876654410 01123345666778899999999999999999999998777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.73  E-value=2.7e-14  Score=133.02  Aligned_cols=273  Identities=14%  Similarity=0.058  Sum_probs=176.8

Q ss_pred             CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016          157 KGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (581)
Q Consensus       157 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (581)
                      ...+.-.++..-+..+...+.++-|+.+|..+++.+       |..-.+|...+..-...|..++-..++++++....  
T Consensus       511 Eeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--  581 (913)
T KOG0495|consen  511 EEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--  581 (913)
T ss_pred             ccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--
Confidence            344555566666666666677777777776666655       33334455555555556677777777777766432  


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                            .....|...+..+...|+...|...+.++.+.        +|..-..+..-..+.....+++.|..+|.++...
T Consensus       582 ------kae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~  647 (913)
T KOG0495|consen  582 ------KAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSI  647 (913)
T ss_pred             ------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence                  12334555666677777777777777777765        3444555666666667777777777777777553


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (581)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (581)
                               ......|..-+.+...+++.++|+.+++++++.+          +.+...|..+|.++..+++.+.|.+.|
T Consensus       648 ---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  648 ---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             ---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence                     1233455556666667777777777777777763          222445667777777777777777777


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (581)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (581)
                      ...+..+        |.....+..|+.+-.+.|+.-.|...++++.-        .+|.....|....++-.+.|+.+.|
T Consensus       709 ~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  709 LQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             HhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHHHH
Confidence            7665543        34445666777777777777777777777654        3555566666666777777777777


Q ss_pred             HHHHHHHHHHH
Q 008016          477 EKLVLEALYIR  487 (581)
Q Consensus       477 ~~~~~~a~~~~  487 (581)
                      .....+|++-+
T Consensus       773 ~~lmakALQec  783 (913)
T KOG0495|consen  773 ELLMAKALQEC  783 (913)
T ss_pred             HHHHHHHHHhC
Confidence            77777776644

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.2e-13  Score=124.76  Aligned_cols=409  Identities=13%  Similarity=0.129  Sum_probs=264.0

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..++.....+...|+|++|+....+.+..          .|+...++..--.+....++|++|..+.+.-...       
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~----------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-------   75 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSI----------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-------   75 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc----------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-------
Confidence            34666777788899999999999888876          5777778888888889999999998665542111       


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL---  275 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  275 (581)
                       .......+.-+.|.++.++.++|+..++-+ +       +.+   ..++...|.+++++|+|++|...|+...+..   
T Consensus        76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~-~-------~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGL-D-------RLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             -hhcchhhHHHHHHHHHcccHHHHHHHHhcc-c-------ccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence             111111267888999999999999988721 1       122   3355667899999999999999997663311   


Q ss_pred             --------------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-------H
Q 008016          276 --------------------ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-------V  328 (581)
Q Consensus       276 --------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~  328 (581)
                                          .+.......+....+++.+.++...|+|.+|++.+++++.++++.+..++..       .
T Consensus       144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el  223 (652)
T KOG2376|consen  144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEEL  223 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHH
Confidence                                0011111223556788999999999999999999999999988776544322       4


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHH----------
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLE----------  397 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~----------  397 (581)
                      ..+...|+.++..+|+..+|...|...+..      ...|.+..+.+-+||..+-....-++ .++..++          
T Consensus       224 ~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~------~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~  297 (652)
T KOG2376|consen  224 NPIRVQLAYVLQLQGQTAEASSIYVDIIKR------NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL  297 (652)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHh------cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence            456678899999999999999999998875      34455555555555543322221111 0000000          


Q ss_pred             ---------------------------HHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016          398 ---------------------------ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (581)
Q Consensus       398 ---------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (581)
                                                 ++.+.... .....|..................+.+|.+++...-+       
T Consensus       298 l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-------  369 (652)
T KOG2376|consen  298 LSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-------  369 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-------
Confidence                                       00011111 1122222221111122222222245555555544433       


Q ss_pred             CCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC--CCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016          451 PDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG--KDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL  527 (581)
Q Consensus       451 ~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~  527 (581)
                       .+|.. ..+...++.+...+|+++.|++.+..........++  ...|   .+...+-..+.+.++.. -|...+.+++
T Consensus       370 -~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P---~~V~aiv~l~~~~~~~~-~a~~vl~~Ai  444 (652)
T KOG2376|consen  370 -GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP---GTVGAIVALYYKIKDND-SASAVLDSAI  444 (652)
T ss_pred             -cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh---hHHHHHHHHHHhccCCc-cHHHHHHHHH
Confidence             34443 456778899999999999999999965543322221  1223   33445566677777777 8889999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          528 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ..+...... .+.....+..++..-.+.|+-++|..++++.+...+...
T Consensus       445 ~~~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~  492 (652)
T KOG2376|consen  445 KWWRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT  492 (652)
T ss_pred             HHHHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence            888776443 355566677788888888999999999999988655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.73  E-value=5e-14  Score=134.53  Aligned_cols=338  Identities=14%  Similarity=0.031  Sum_probs=230.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +|+.+..+..+|..+...|+.+.+...+.+......    ............+..+...|++++|...++++++..    
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----   73 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA----ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----   73 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            577788899999999999999999887777666542    223344456677889999999999999999998752    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                       +++   ..++.. +..+...|++..+.....+++..    ..+.+|........+|.++..+|++++|+..++++++. 
T Consensus        74 -P~~---~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-  143 (355)
T cd05804          74 -PRD---LLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-  143 (355)
T ss_pred             -CCc---HHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence             222   233333 55555566555555555555443    23457777888889999999999999999999999986 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                             .|.....+..+|.++...|++++|+.++++++....      .++......+..++.++...|++++|+..++
T Consensus       144 -------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  210 (355)
T cd05804         144 -------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD------CSSMLRGHNWWHLALFYLERGDYEAALAIYD  210 (355)
T ss_pred             -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC------CCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                   234466788899999999999999999999988632      1223334456789999999999999999999


Q ss_pred             HHHHHHHHhcCCCChHHHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016          398 ECLLITEKYKGKEHPSFVTH--LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (581)
                      +++...     +..+.....  ...+...+...|....+..+ +.+........ +. +.....-...+.++...|+.++
T Consensus       211 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~  282 (355)
T cd05804         211 THIAPS-----AESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHF-PD-HGLAFNDLHAALALAGAGDKDA  282 (355)
T ss_pred             HHhccc-----cCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhc-Cc-ccchHHHHHHHHHHhcCCCHHH
Confidence            985431     111111111  11223334444543333332 22222211110 11 2222233467888889999999


Q ss_pred             HHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          476 AEKLVLEALYIREIAF-GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       476 A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      |...++......+... ..............+.++...|++. +|...+..++.....+-|
T Consensus       283 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~-~A~~~L~~al~~a~~~gg  342 (355)
T cd05804         283 LDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA-TALELLGPVRDDLARIGG  342 (355)
T ss_pred             HHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhCC
Confidence            9999998877665410 0111233455677888999999999 999999999998866544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.73  E-value=3.6e-15  Score=133.70  Aligned_cols=204  Identities=16%  Similarity=0.113  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      ......+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|...++++++.     
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----   94 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----   94 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence            345778899999999999999999999999876        4556778899999999999999999999999986     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                         .|.....+.++|.++...|++++|...+++++...        ..+.....+..+|.++...|++++|...+++++.
T Consensus        95 ---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 ---NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP--------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             ---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               23445678899999999999999999999998741        1222234567899999999999999999999987


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      ..        |.....+..+|.++...|++++|..++++++..        .+.....+..++.++...|+.++|..+.+
T Consensus       164 ~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  227 (234)
T TIGR02521       164 ID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGA  227 (234)
T ss_pred             hC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            62        223456788999999999999999999999885        12334556678899999999999998877


Q ss_pred             HHHH
Q 008016          482 EALY  485 (581)
Q Consensus       482 ~a~~  485 (581)
                      .+..
T Consensus       228 ~~~~  231 (234)
T TIGR02521       228 QLQK  231 (234)
T ss_pred             HHHh
Confidence            6644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=99.72  E-value=7.8e-14  Score=120.82  Aligned_cols=346  Identities=14%  Similarity=0.091  Sum_probs=262.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      -+..+..++...++++|+....+.+....+       .......+-.+..+...+|.|+++..+--..+...... ++..
T Consensus         9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-------~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~-~ds~   80 (518)
T KOG1941|consen    9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSD-------LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL-EDSD   80 (518)
T ss_pred             HHHHHHhHhcCchHHHHHHHHHHHHHHHHH-------HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            456677888999999999999988876544       34555667777888889999998887665555544332 3334


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ....++.+++..+....++.+++.+-...+.+-....+   ..-......++.++...+.++++++.|+.|+.+....  
T Consensus        81 ~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--  155 (518)
T KOG1941|consen   81 FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--  155 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--
Confidence            55677889999999999999998887776654211111   1223556678999999999999999999999997653  


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      .|......++..||.+|....++++|.-+..++.++.....-.+  ......+++.++..+..+|....|.++.+++.++
T Consensus       156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            23334456888999999999999999999999999877652122  1224567889999999999999999999999998


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH-----
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-----  433 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----  433 (581)
                      .-.    ..+.+........+|.+|...|+.+.|..-|++|+......  .+......++...|.++....-..+     
T Consensus       236 al~----~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Cr  309 (518)
T KOG1941|consen  236 ALQ----HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL--GDRMGQVEALDGAAKCLETLRLQNKICNCR  309 (518)
T ss_pred             HHH----hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence            765    46777888888999999999999999999999999887665  3444555667777777665544444     


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          434 AERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      |+++-++.+++..++.  ....+......++.+|..+|.-++-...+..+-+..
T Consensus       310 ale~n~r~levA~~IG--~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~  361 (518)
T KOG1941|consen  310 ALEFNTRLLEVASSIG--AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV  361 (518)
T ss_pred             hhHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            9999999999887762  234566788899999999998887777776655443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.9e-13  Score=119.39  Aligned_cols=388  Identities=14%  Similarity=0.038  Sum_probs=262.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH----------hcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI----------NAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG  190 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  190 (581)
                      +.......+....+..|...|..++..-....          ......+.....-...+.||...++-+.|+..+.... 
T Consensus        46 l~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p-  124 (564)
T KOG1174|consen   46 LLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVP-  124 (564)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCC-
Confidence            44444555555566666666666655432211          0112334556677888999999999999988776532 


Q ss_pred             HHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-----------HHH---------------cCCCCHHH
Q 008016          191 IVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL-----------ESR---------------YGKTSILL  244 (581)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------~~~---------------~~~~~~~~  244 (581)
                             ...........++..+..-++..++.-.|...+.-+           +..               ..+..+..
T Consensus       125 -------~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwl  197 (564)
T KOG1174|consen  125 -------PTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWL  197 (564)
T ss_pred             -------ccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHH
Confidence                   112222333445555555555444444443332211           000               01111111


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ....  .+.+..-.++...|...+--+-..      ..-+.....+..+|.++...|++.+|+..|+++..+        
T Consensus       198 s~wi--ka~Aq~~~~~hs~a~~t~l~le~~------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------  261 (564)
T KOG1174|consen  198 SKWI--KALAQMFNFKHSDASQTFLMLHDN------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------  261 (564)
T ss_pred             HHHH--HHHHHHHhcccchhhhHHHHHHhh------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------
Confidence            1111  223333344444443333221111      124556778899999999999999999999998765        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      +|....++-..|.++...|+++.-..+....+.+.+..          ..-|..-+...+...++..|+.+-+++++.  
T Consensus       262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t----------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--  329 (564)
T KOG1174|consen  262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT----------ASHWFVHAQLLYDEKKFERALNFVEKCIDS--  329 (564)
T ss_pred             ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc----------hhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--
Confidence            67788888888999999999998888877776663221          122234566778889999999999998876  


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (581)
                            .+....++..-|.++...|+.++|+-.|+.|..+        .|....+|..|..+|...|++.||......++
T Consensus       330 ------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~  395 (564)
T KOG1174|consen  330 ------EPRNHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTI  395 (564)
T ss_pred             ------CcccchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence                  2344567888899999999999999999999875        46777899999999999999999999999998


Q ss_pred             HHHHHHcCCCChhHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016          485 YIREIAFGKDSLPVGEALDCLV-SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  563 (581)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  563 (581)
                      ...        +..+.++..+| .++...-...++|..++++++.+        .|....+...+|.+....|++++++.
T Consensus       396 ~~~--------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  396 RLF--------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             HHh--------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHH
Confidence            866        34456666665 55554444334899999999874        47888889999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008016          564 LKKRLSNLRMK  574 (581)
Q Consensus       564 ~~~~a~~l~~~  574 (581)
                      ++++.+...++
T Consensus       460 LLe~~L~~~~D  470 (564)
T KOG1174|consen  460 LLEKHLIIFPD  470 (564)
T ss_pred             HHHHHHhhccc
Confidence            99999877543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.72  E-value=3.3e-15  Score=121.49  Aligned_cols=198  Identities=20%  Similarity=0.196  Sum_probs=167.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      .....+...||.-|...|++..|..-++++++.        +|....++..++.+|...|+.+.|.+.|++++.+.    
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~----   99 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA----   99 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----
Confidence            345677889999999999999999999999986        67888999999999999999999999999999972    


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                         |+.   ..+++|.|..++.+|++++|...|++|+..      +..+....++.|+|.|..+.|+++.|..+|+++++
T Consensus       100 ---p~~---GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~  167 (250)
T COG3063         100 ---PNN---GDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE  167 (250)
T ss_pred             ---CCc---cchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence               333   556799999999999999999999999874      56677778999999999999999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  522 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~  522 (581)
                      +        +|........++......|++..|..+++......        +..+..+....++-...|+.. .+-.+
T Consensus       168 ~--------dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--------~~~A~sL~L~iriak~~gd~~-~a~~Y  229 (250)
T COG3063         168 L--------DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--------GAQAESLLLGIRIAKRLGDRA-AAQRY  229 (250)
T ss_pred             h--------CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHhccHH-HHHHH
Confidence            5        45666678899999999999999999998765422        244566766777777888876 44444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.71  E-value=6.7e-15  Score=131.92  Aligned_cols=206  Identities=16%  Similarity=0.147  Sum_probs=169.0

Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      +.......+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++.   
T Consensus        26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---   94 (234)
T TIGR02521        26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---   94 (234)
T ss_pred             cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence            33455677899999999999999999999999874        2334678889999999999999999999999987   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           .|.....+..+|.++...|++++|...+++++..      ...+.....+..+|.++...|++++|...+.+++.
T Consensus        95 -----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  163 (234)
T TIGR02521        95 -----NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ  163 (234)
T ss_pred             -----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 3444568889999999999999999999999864      22344556788899999999999999999999988


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (581)
                      .       .++.   ...+..+|.++...|++++|..++++++...     +.   ....+..++.++...|+.++|..+
T Consensus       164 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       164 I-------DPQR---PESLLELAELYYLRGQYKDARAYLERYQQTY-----NQ---TAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             h-------CcCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6       2222   3356789999999999999999999988761     22   234455788899999999999988


Q ss_pred             HHHHHH
Q 008016          438 LRICLD  443 (581)
Q Consensus       438 ~~~al~  443 (581)
                      .+.+..
T Consensus       226 ~~~~~~  231 (234)
T TIGR02521       226 GAQLQK  231 (234)
T ss_pred             HHHHHh
Confidence            776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=1.5e-13  Score=131.59  Aligned_cols=301  Identities=14%  Similarity=0.114  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHH
Q 008016          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSIL  243 (581)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  243 (581)
                      ....-|......|+++.|++.+.+....     .+.|..  .+...+......|+++.|..++.++.+..     ++. .
T Consensus        86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~  152 (398)
T PRK10747         86 KQTEQALLKLAEGDYQQVEKLMTRNADH-----AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA-----DND-Q  152 (398)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhc-----ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-h
Confidence            3445566667789999999777764332     122322  23444666689999999999999997642     121 1


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                       .......+.++...|++++|...+++..+.        .|....++..++.+|...|++++|.+.+.+..+..     .
T Consensus       153 -~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-----~  218 (398)
T PRK10747        153 -LPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-----V  218 (398)
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-----C
Confidence             222334489999999999999999998876        56667888899999999999999999998877642     1


Q ss_pred             CCchHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          324 NDGRVG-----MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       324 ~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                      .++...     .++..+........+-+....+++..-..       .++.   ..+...++..+...|+.++|...+++
T Consensus       219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-------~~~~---~~~~~~~A~~l~~~g~~~~A~~~L~~  288 (398)
T PRK10747        219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-------TRHQ---VALQVAMAEHLIECDDHDTAQQIILD  288 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-------HhCC---HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            112211     12222222222222222222222222111       1222   34557799999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                      +++.      +.++.....+   +  ....++++++++..++.++        .+|+....+..+|.++...|++++|.+
T Consensus       289 ~l~~------~~~~~l~~l~---~--~l~~~~~~~al~~~e~~lk--------~~P~~~~l~l~lgrl~~~~~~~~~A~~  349 (398)
T PRK10747        289 GLKR------QYDERLVLLI---P--RLKTNNPEQLEKVLRQQIK--------QHGDTPLLWSTLGQLLMKHGEWQEASL  349 (398)
T ss_pred             HHhc------CCCHHHHHHH---h--hccCCChHHHHHHHHHHHh--------hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            8763      2334332222   2  2245999999999988876        367777888999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                      +|+++++..        |+. ..+..++.++.+.|+.+ +|..+|++++.+.
T Consensus       350 ~le~al~~~--------P~~-~~~~~La~~~~~~g~~~-~A~~~~~~~l~~~  391 (398)
T PRK10747        350 AFRAALKQR--------PDA-YDYAWLADALDRLHKPE-EAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHhcC--------CCH-HHHHHHHHHHHHcCCHH-HHHHHHHHHHhhh
Confidence            999998753        332 34568999999999999 9999999998754

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.70  E-value=1.8e-14  Score=131.71  Aligned_cols=227  Identities=14%  Similarity=0.035  Sum_probs=167.1

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (581)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (581)
                      .+..+.++..+.+++....    .+++..+..++.+|.+|...|++++|+..|+++++.        .|....+++.+|.
T Consensus        39 ~~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~  106 (296)
T PRK11189         39 TLQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGI  106 (296)
T ss_pred             chHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHH
Confidence            4566778888888775321    234456788999999999999999999999999987        5667889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 008016          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (581)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (581)
                      ++...|++++|...|++++++        +|....++.++|.++...|++++|+..++++++.       .|+++.. ..
T Consensus       107 ~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-------~P~~~~~-~~  170 (296)
T PRK11189        107 YLTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-------DPNDPYR-AL  170 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHH-HH
Confidence            999999999999999999986        4566778999999999999999999999999986       3444421 11


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (581)
                      +   ..+....+++++|+..+.+++...       .+..   + ..+.++...|+..++ ..++.+.+...... ...|.
T Consensus       171 ~---~~l~~~~~~~~~A~~~l~~~~~~~-------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~  234 (296)
T PRK11189        171 W---LYLAESKLDPKQAKENLKQRYEKL-------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAER  234 (296)
T ss_pred             H---HHHHHccCCHHHHHHHHHHHHhhC-------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHH
Confidence            1   223456788999999998765331       1111   1 123444556666544 23444432111000 01244


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      ...+++.+|.++...|++++|+.+|+++++.
T Consensus       235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        235 LCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5678999999999999999999999999874

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.70  E-value=1.3e-14  Score=132.71  Aligned_cols=226  Identities=12%  Similarity=0.090  Sum_probs=164.3

Q ss_pred             CChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 008016          176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL  255 (581)
Q Consensus       176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  255 (581)
                      +..+.++..+.+++...   ..+++..+..++.+|.+|...|++++|+..|++++++.        |....++..+|.++
T Consensus        40 ~~~e~~i~~~~~~l~~~---~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASR---DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--------PDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccc---cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence            44556666666655432   23344557789999999999999999999999999852        33467899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (581)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (581)
                      ...|++++|+..|++++++        .|....++.++|.++...|++++|+..++++++.     .++++. ...+   
T Consensus       109 ~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~-~~~~---  171 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPY-RALW---  171 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHH-HHHH---
Confidence            9999999999999999988        5667788999999999999999999999999986     233332 1112   


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (581)
                      ..+....+++++|+..+.+++..      ..++.  .     ..+.++...|+..++ ..++.+....... ....+...
T Consensus       172 ~~l~~~~~~~~~A~~~l~~~~~~------~~~~~--~-----~~~~~~~~lg~~~~~-~~~~~~~~~~~~~-~~l~~~~~  236 (296)
T PRK11189        172 LYLAESKLDPKQAKENLKQRYEK------LDKEQ--W-----GWNIVEFYLGKISEE-TLMERLKAGATDN-TELAERLC  236 (296)
T ss_pred             HHHHHccCCHHHHHHHHHHHHhh------CCccc--c-----HHHHHHHHccCCCHH-HHHHHHHhcCCCc-HHHHHHHH
Confidence            22345678999999999876643      11111  1     134455567777554 2444443221110 00124456


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                      .++.++|.++...|++++|+.+|+++++.
T Consensus       237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        237 ETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            78999999999999999999999999984

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.69  E-value=2.8e-13  Score=129.64  Aligned_cols=303  Identities=11%  Similarity=0.061  Sum_probs=209.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH-HHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI-IALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+..|......|++++|.+...+.-+           ..+.+..+.. .+......|+++.|..++.++.+..   
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~-----------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---  148 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNAD-----------HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---  148 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            344467777778889999999976665433           1222333344 4666699999999999999986543   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                       ++ .... .....+.++...|++++|...+++..+.     .   |....++..++.+|...|++++|+..+.+..+..
T Consensus       149 -~~-~~~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~  217 (398)
T PRK10747        149 -DN-DQLP-VEITRVRIQLARNENHAARHGVDKLLEV-----A---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH  217 (398)
T ss_pred             -Cc-chHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence             11 2222 2234588999999999999999998774     2   3335678888999999999999999998877652


Q ss_pred             HHhcCCCChhhHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016          276 ELNRGTESADLVL-----PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (581)
Q Consensus       276 ~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (581)
                           ..++....     ++..+........+    .+.+.+..+...    ...+........++..+...|+.++|..
T Consensus       218 -----~~~~~~~~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp----~~~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        218 -----VGDEEHRAMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQS----RKTRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCC----HHHhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence                 11222111     22222222222222    223333332211    1123445677789999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (581)
                      .++++++.       .+ ++.....   .  .....++.+++++.+++.++.        +|+....+..+|.++...|+
T Consensus       285 ~L~~~l~~-------~~-~~~l~~l---~--~~l~~~~~~~al~~~e~~lk~--------~P~~~~l~l~lgrl~~~~~~  343 (398)
T PRK10747        285 IILDGLKR-------QY-DERLVLL---I--PRLKTNNPEQLEKVLRQQIKQ--------HGDTPLLWSTLGQLLMKHGE  343 (398)
T ss_pred             HHHHHHhc-------CC-CHHHHHH---H--hhccCCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCC
Confidence            99998873       22 3322211   1  223458999999988887654        45666788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       431 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      +++|.++|+++++.        .|+.. .+..++.++...|+.++|..+|++++.+.
T Consensus       344 ~~~A~~~le~al~~--------~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        344 WQEASLAFRAALKQ--------RPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHHhc--------CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999984        34443 45689999999999999999999998765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.69  E-value=2.6e-13  Score=126.61  Aligned_cols=372  Identities=12%  Similarity=0.022  Sum_probs=273.2

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      .-..+.+-+..+.+.+.++-|+.+|..+++.          .|....++...+..-..-|..++-..+++++....    
T Consensus       515 ~~~tw~~da~~~~k~~~~~carAVya~alqv----------fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~----  580 (913)
T KOG0495|consen  515 RKSTWLDDAQSCEKRPAIECARAVYAHALQV----------FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC----  580 (913)
T ss_pred             hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----------ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC----
Confidence            3445778888899999999999999999987          66666777777777777899999999999987765    


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                         |.....|...+..++..|+...|...+.++.+..        |....++..-..+......++.|..++.++.... 
T Consensus       581 ---pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--------pnseeiwlaavKle~en~e~eraR~llakar~~s-  648 (913)
T KOG0495|consen  581 ---PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--------PNSEEIWLAAVKLEFENDELERARDLLAKARSIS-  648 (913)
T ss_pred             ---CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--------CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC-
Confidence               3344456777888899999999999999998752        2235566666777888899999999999887641 


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                              ....+++.-+.+...+++.++|+.+++++++.+        |.....|..+|+++.+.++.+.|.+.|...+
T Consensus       649 --------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~  712 (913)
T KOG0495|consen  649 --------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGT  712 (913)
T ss_pred             --------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence                    235677788888899999999999999999874        5667888999999999999999999999887


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                      +.+..       .   .-.|..|+.+-...|....|...++++.-.        +|.....|.....+-.+.|+.+.|..
T Consensus       713 k~cP~-------~---ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  713 KKCPN-------S---IPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             ccCCC-------C---chHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHH
Confidence            76322       1   234577888999999999999999987542        46666677777888889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      +..+|++-        -|.....|..-..+.-.-++-..++..+++.         ..+|   .++..+|.++....+.+
T Consensus       775 lmakALQe--------cp~sg~LWaEaI~le~~~~rkTks~DALkkc---------e~dp---hVllaia~lfw~e~k~~  834 (913)
T KOG0495|consen  775 LMAKALQE--------CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---------EHDP---HVLLAIAKLFWSEKKIE  834 (913)
T ss_pred             HHHHHHHh--------CCccchhHHHHHHhccCcccchHHHHHHHhc---------cCCc---hhHHHHHHHHHHHHHHH
Confidence            99999884        3333333332222222233333333333332         2223   44667777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          517 TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       517 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                       +|.+.|.+++.+        .|++.+++...-..+...|.-++-.+++.+...-.+.+++
T Consensus       835 -kar~Wf~Ravk~--------d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~  886 (913)
T KOG0495|consen  835 -KAREWFERAVKK--------DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGE  886 (913)
T ss_pred             -HHHHHHHHHHcc--------CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCc
Confidence             777777777763        3555666666666777777777777777766655555444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.68  E-value=1.1e-12  Score=122.55  Aligned_cols=389  Identities=11%  Similarity=0.076  Sum_probs=270.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .++..+...+..++|...+...++.++.          .|++.+++...|..+..+|+-++|.......+..       +
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-------d   71 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKK----------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-------D   71 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHh----------CCccchhHHhccchhhcccchHHHHHHHHHHhcc-------C
Confidence            4788888889999999999999998875          7888899999999999999999999988876553       2


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      +....+|..+|.++....+|++|+++|+.|+.+        .++...++..++....++++++-....-.+.++.     
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-----  138 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-----  138 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-----
Confidence            334457889999999999999999999999986        2345778899999999999999888887777776     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                         .|.....|...+..+.-.|++..|....+..........+........+......+....|.+++|.+.+..--.. 
T Consensus       139 ---~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-  214 (700)
T KOG1156|consen  139 ---RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-  214 (700)
T ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence               4566778899999999999999999998887766542222222234445556667778888888887766543221 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH-HHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE-RLL  438 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~  438 (581)
                               ...-.......+.++...+++++|...+...+..        .|+....+..+-.++..-.+.-++. .+|
T Consensus       215 ---------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly  277 (700)
T KOG1156|consen  215 ---------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--------NPDNLDYYEGLEKALGKIKDMLEALKALY  277 (700)
T ss_pred             ---------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--------CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence                     1111334466788999999999999999987765        3555555554444443222222222 222


Q ss_pred             HHHHHHHHHh----------cCC-CCcchHH-------------HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016          439 RICLDIMTKT----------VGP-DDQSISF-------------PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (581)
Q Consensus       439 ~~al~~~~~~----------~~~-~~~~~~~-------------~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (581)
                      ...-+.....          ... +-+....             ....+-..|   .+..+ ...+++.+......+++.
T Consensus       278 ~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k-~~~le~Lvt~y~~~L~~~  353 (700)
T KOG1156|consen  278 AILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEK-VAFLEKLVTSYQHSLSGT  353 (700)
T ss_pred             HHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhH-hHHHHHHHHHHHhhcccc
Confidence            2221111000          000 0000000             001111111   11222 225555555554443332


Q ss_pred             ------------Ch-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhh
Q 008016          495 ------------SL-PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  561 (581)
Q Consensus       495 ------------~~-~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  561 (581)
                                  .| ....++..++.-+...|+++ .|..++..|+.        ..|..++.+..-|+++...|..++|
T Consensus       354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~-~A~~yId~AId--------HTPTliEly~~KaRI~kH~G~l~eA  424 (700)
T KOG1156|consen  354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE-VALEYIDLAID--------HTPTLIELYLVKARIFKHAGLLDEA  424 (700)
T ss_pred             cCCCcccccccCCchHHHHHHHHHHHHHHHcccHH-HHHHHHHHHhc--------cCchHHHHHHHHHHHHHhcCChHHH
Confidence                        22 23445677899999999999 99999999986        5688889999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008016          562 FPLKKRLSNLR  572 (581)
Q Consensus       562 ~~~~~~a~~l~  572 (581)
                      ..+++++.++.
T Consensus       425 a~~l~ea~elD  435 (700)
T KOG1156|consen  425 AAWLDEAQELD  435 (700)
T ss_pred             HHHHHHHHhcc
Confidence            99999998775

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=1.2e-14  Score=133.86  Aligned_cols=240  Identities=15%  Similarity=0.132  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      -+..|..+++.|+..+|+-.|+.++..          +|.+++++..||.+....++-..|+..+++++++.       |
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkq----------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-------P  350 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQ----------DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-------P  350 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhh----------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------C
Confidence            356788899999999999999999877          99999999999999999999999999999998775       7


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-----------HcCC----CC------------------H--HHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES-----------RYGK----TS------------------I--LLV  245 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~----~~------------------~--~~~  245 (581)
                      ....++..||..|...|.-.+|..++.+-+....+           ..+.    .+                  +  ...
T Consensus       351 ~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp  430 (579)
T KOG1125|consen  351 TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP  430 (579)
T ss_pred             ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh
Confidence            77788999999999999999999999887654200           0000    00                  0  234


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      .+...||.+|...|+|++|+++|+.||..        .|.....|+.||-.+....+..+|+..|.+|+++        .
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------q  494 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------Q  494 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------C
Confidence            56778999999999999999999999987        6778899999999999999999999999999997        5


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (581)
                      |..+++.++||..+...|.|++|.++|-.++.+.++.......+..--.+|..|-.++...++.|-+.
T Consensus       495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            78889999999999999999999999999999977631111111011223344445556666665433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.67  E-value=8.6e-15  Score=134.88  Aligned_cols=266  Identities=15%  Similarity=0.180  Sum_probs=196.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                      +..|..+.+.|+..+|.-.|+.++.        .+|..+.+|..||.+....++-..|+..+++++++        +|..
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVk--------qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N  352 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVK--------QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN  352 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHh--------hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence            5678889999999999999999987        46788999999999999999999999999999998        7888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--CCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--GEND-GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      ..++..||..|...|.-.+|..++.+-+....+..  .... .....    ...-......+..-.++|-.+.....   
T Consensus       353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~---  425 (579)
T KOG1125|consen  353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFE----NTKSFLDSSHLAHIQELFLEAARQLP---  425 (579)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcccccc----CCcCCCCHHHHHHHHHHHHHHHHhCC---
Confidence            99999999999999999999999998776421100  0000 00000    00000000011122233333322210   


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                       ... +   ..+...||.+|...|+|++|+.+|+.|+..        .|.....|+.||-.+..-.+.++|+..|++|++
T Consensus       426 -~~~-D---pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq  492 (579)
T KOG1125|consen  426 -TKI-D---PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ  492 (579)
T ss_pred             -CCC-C---hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence             012 2   335578999999999999999999999976        577778999999999999999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh--HHHHHHHHHHHHHHcCCCh
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP--VGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~  516 (581)
                      +        .|..+++.++||..|..+|.|++|.++|-.|+.+.+...+.....  .-.++..|-.++...++.+
T Consensus       493 L--------qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  493 L--------QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             c--------CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            6        688889999999999999999999999999999987643322221  1133444445555555555

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.65  E-value=5.6e-12  Score=120.37  Aligned_cols=372  Identities=15%  Similarity=0.139  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+...+..+...|.-..|+.+.+..+..       .+..++....+..-..|....|.+++++.+..+++..... 
T Consensus       355 ~~~e~w~~~als~saag~~s~Av~ll~~~~~~-------~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~-  426 (799)
T KOG4162|consen  355 GEHERWYQLALSYSAAGSDSKAVNLLRESLKK-------SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGG-  426 (799)
T ss_pred             hhHHHHHHHHHHHHHhccchHHHHHHHhhccc-------ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-
Confidence            34455777888888999999999988887654       1112333344444455666789999999999999886522 


Q ss_pred             CCCcchHHHHHHHHHHHHHhc----cCHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTL----ENYEKSMLVYQRVINVLESR--YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (581)
                       .........+..+|.+|..+    ....+=..+..++++..++.  .++.+   ..+.+.++.-|..+++.+.|.++.+
T Consensus       427 -~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d---p~~if~lalq~A~~R~l~sAl~~~~  502 (799)
T KOG4162|consen  427 -QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD---PLVIFYLALQYAEQRQLTSALDYAR  502 (799)
T ss_pred             -hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHhHHHHHHHHH
Confidence             22233445566677766533    33333333333333333332  12333   3678889999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC------------chHHHHHHHH--
Q 008016          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND------------GRVGMAMCSL--  335 (581)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~l--  335 (581)
                      ++++..       ..+.+.+|..|+.++...+++.+|+...+.+++-....++..+            .....+...+  
T Consensus       503 eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~  575 (799)
T KOG4162|consen  503 EALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA  575 (799)
T ss_pred             HHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH
Confidence            999982       3345788999999999999999999999999886543211100            0000000000  


Q ss_pred             ---------------------HHHHHHCCCHHHHHHHHHHHHHHHHhh--------------ccCCCCC--hHHHHHHHH
Q 008016          336 ---------------------AHAKCANGNAEEAVELYKKALRVIKDS--------------NYMSLDD--SIMENMRID  378 (581)
Q Consensus       336 ---------------------a~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~--~~~~~~~~~  378 (581)
                                           +......++..+|...+.++.......              ...++++  ......+..
T Consensus       576 ~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwll  655 (799)
T KOG4162|consen  576 LWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLL  655 (799)
T ss_pred             HHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHH
Confidence                                 001111223334444444443332210              0001111  122334556


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (581)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (581)
                      .+..+...+..++|..++.++-.+.        +.....++..|.++..+|+.++|.+.|..++.+        +|+...
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~  719 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVP  719 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcH
Confidence            7778888899999999988887663        667788999999999999999999999999985        566667


Q ss_pred             HHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 008016          459 PMLHLGITLYHLNRDKEAEK--LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE  531 (581)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~  531 (581)
                      +...+|.++...|+..-|..  ++..++++.        |...++|+.+|.++...|+.+ +|.++|..++++..
T Consensus       720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d--------p~n~eaW~~LG~v~k~~Gd~~-~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  720 SMTALAELLLELGSPRLAEKRSLLSDALRLD--------PLNHEAWYYLGEVFKKLGDSK-QAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccchH-HHHHHHHHHHhhcc
Confidence            88899999999999888877  888888753        444489999999999999999 99999999998653

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.6e-14  Score=123.96  Aligned_cols=287  Identities=16%  Similarity=0.092  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (581)
                      ...+......++..+++..+|.+|+..+..+++.          .|+.+..|.+.+..++..|++++|....++..++.+
T Consensus        45 ~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd  114 (486)
T KOG0550|consen   45 AAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM----------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD  114 (486)
T ss_pred             HHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh----------CccchhhhchhHHHHHHHHhHhhcccchhhheecCC
Confidence            3345566788889999999999999999999988          677788999999999999999999988887666542


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH--------HHHHHHcC--CCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI--------NVLESRYG--KTSILLVTSLLGMAKVLGSIGRAKK  263 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~  263 (581)
                      .       ........+.++...++..+|...++..-        ...+.+..  ...|....+...-+.++...|++++
T Consensus       115 ~-------~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~  187 (486)
T KOG0550|consen  115 G-------FSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE  187 (486)
T ss_pred             C-------ccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence            2       22245566777777777777665554211        11111111  1124455566667889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc---------hHHHHHHH
Q 008016          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG---------RVGMAMCS  334 (581)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~~~~~  334 (581)
                      |...--..+++        ++....++..-|.++...++.+.|+.+|++++.+-     +++.         .....+..
T Consensus       188 a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld-----pdh~~sk~~~~~~k~le~~k~  254 (486)
T KOG0550|consen  188 AQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLD-----PDHQKSKSASMMPKKLEVKKE  254 (486)
T ss_pred             HHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhccC-----hhhhhHHhHhhhHHHHHHHHh
Confidence            99887777766        55667788888999999999999999999999863     3332         34455667


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH
Q 008016          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (581)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (581)
                      -|.-.++.|++.+|.+.|..++.+.      +.+....+.+|.+.+.+..+.|+..+|+.-.+.++.+        ++..
T Consensus       255 ~gN~~fk~G~y~~A~E~Yteal~id------P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~sy  320 (486)
T KOG0550|consen  255 RGNDAFKNGNYRKAYECYTEALNID------PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSY  320 (486)
T ss_pred             hhhhHhhccchhHHHHHHHHhhcCC------ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHH
Confidence            7888999999999999999999973      2334566778999999999999999999999999987        4677


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          415 VTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                      ..++...|.++...+++++|.+.|+++++.
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            889999999999999999999999999885

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.3e-10  Score=107.91  Aligned_cols=393  Identities=12%  Similarity=0.087  Sum_probs=252.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI---------  191 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------  191 (581)
                      .++.+.+.++.+..++|+..++- +            ++....++...|.+++++|+|++|...|+.+.+-         
T Consensus        82 ~fEKAYc~Yrlnk~Dealk~~~~-~------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen   82 FFEKAYCEYRLNKLDEALKTLKG-L------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             hHHHHHHHHHcccHHHHHHHHhc-c------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence            37899999999999999998872 2            3344557777899999999999999999876331         


Q ss_pred             ---------------HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHH
Q 008016          192 ---------------VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLL  249 (581)
Q Consensus       192 ---------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~  249 (581)
                                     ....+.........+++.+.++...|+|.+|++.+++++.++++.+..++.       +...+..
T Consensus       149 r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv  228 (652)
T KOG2376|consen  149 RANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV  228 (652)
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence                           111111222245668899999999999999999999999988776543322       4566788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH----HHHHcCCC
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKI----YTKVYGEN  324 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~----~~~~~~~~  324 (581)
                      .++.++..+|+..+|...|...+...    ..|.|..+.+-++|..+-....-++. ++..++.....    ....+  .
T Consensus       229 QlayVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L--s  302 (652)
T KOG2376|consen  229 QLAYVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL--S  302 (652)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH--H
Confidence            89999999999999999999888762    34666777777777665544433331 11111111100    00000  0


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      +...-..+.+.+.+.+..+.-+.+.+....          ..+.. .....++. ..........+.+|.+++...-+  
T Consensus       303 ~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~----------lp~~~p~~~~~~ll-~~~t~~~~~~~~ka~e~L~~~~~--  369 (652)
T KOG2376|consen  303 KKQKQAIYRNNALLALFTNKMDQVRELSAS----------LPGMSPESLFPILL-QEATKVREKKHKKAIELLLQFAD--  369 (652)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh----------CCccCchHHHHHHH-HHHHHHHHHHHhhhHHHHHHHhc--
Confidence            112234455666666666665555544332          12222 22222222 22222333356667766655332  


Q ss_pred             HHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          404 EKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       404 ~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                            .+|.. ..+...++.+...+|+++.|++.+............  ...|.++   ..+-..+...++-+-|...+
T Consensus       370 ------~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V---~aiv~l~~~~~~~~~a~~vl  440 (652)
T KOG2376|consen  370 ------GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV---GAIVALYYKIKDNDSASAVL  440 (652)
T ss_pred             ------cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH---HHHHHHHHhccCCccHHHHH
Confidence                  23333 557778889999999999999999855432222211  1234333   34455777888888899999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhh
Q 008016          481 LEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE  560 (581)
Q Consensus       481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  560 (581)
                      .+++........ ..+.....+...+..-.+.|+-+ +|...+++.++.        .|+...++..+...|... +.+.
T Consensus       441 ~~Ai~~~~~~~t-~s~~l~~~~~~aa~f~lr~G~~~-ea~s~leel~k~--------n~~d~~~l~~lV~a~~~~-d~ek  509 (652)
T KOG2376|consen  441 DSAIKWWRKQQT-GSIALLSLMREAAEFKLRHGNEE-EASSLLEELVKF--------NPNDTDLLVQLVTAYARL-DPEK  509 (652)
T ss_pred             HHHHHHHHHhcc-cchHHHhHHHHHhHHHHhcCchH-HHHHHHHHHHHh--------CCchHHHHHHHHHHHHhc-CHHH
Confidence            999988765543 23455566777888888889999 999999998873        355567777777777654 5666


Q ss_pred             hHHHH
Q 008016          561 KFPLK  565 (581)
Q Consensus       561 A~~~~  565 (581)
                      |..+-
T Consensus       510 a~~l~  514 (652)
T KOG2376|consen  510 AESLS  514 (652)
T ss_pred             HHHHh
Confidence            66543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.62  E-value=5.1e-11  Score=116.33  Aligned_cols=414  Identities=12%  Similarity=0.047  Sum_probs=264.7

Q ss_pred             hhhccccchhhhhhccchhhHHHHHHhhhhcccCCCcccccccccccccccCCc----chHHhhhhhhhhhhhhccccch
Q 008016           38 PICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAP----NDFARSKTLHDHSSNLWDGMND  113 (581)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~  113 (581)
                      ...+...+...+.|+..|+++.++|.++|.++++..++..+.+.++....|..+    +.|+|||.+|......--. ..
T Consensus       263 eeVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~-~~  341 (894)
T COG2909         263 EEVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ-RE  341 (894)
T ss_pred             HHHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc-cc
Confidence            357889999999999999999999999999999999999999998887777643    5899999998776532211 11


Q ss_pred             HHHHHHHHHHHH-HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          114 FERQLLELFNEV-KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (581)
Q Consensus       114 ~~~~~~~l~~~~-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (581)
                      .......++..| ..+...|..++|++..-.+           .+....+..+...+.-....++..--..+.+.+-.-.
T Consensus       342 ~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-----------~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~  410 (894)
T COG2909         342 LAARLKELHRAAAEWFAEHGLPSEAIDHALAA-----------GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAEL  410 (894)
T ss_pred             cCCchhHHHHHHHHHHHhCCChHHHHHHHHhC-----------CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHH
Confidence            223334444444 6667899999999855443           1223334455555666666666554444433311100


Q ss_pred             hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008016          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (581)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (581)
                         -..+|..   ....++......++.+|.....++........ .......+......|.+....|++++|+++.+.+
T Consensus       411 ---l~~~P~L---vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~a  484 (894)
T COG2909         411 ---LASTPRL---VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLA  484 (894)
T ss_pred             ---HhhCchH---HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence               1122332   34567778889999999999988876554310 0111233444555677888899999999999999


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH--H
Q 008016          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA--V  349 (581)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A--~  349 (581)
                      +.....   ........++..+|.+..-.|++++|..+..++.++.+..  +.......+....+.++..+|+...|  .
T Consensus       485 l~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a~~~  559 (894)
T COG2909         485 LVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARAEQE  559 (894)
T ss_pred             HHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            987432   2234456778889999999999999999999999987765  22233455566678889999943333  2


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc
Q 008016          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK  429 (581)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  429 (581)
                      ..+...-.....   ..+-+.....++..+...+.+   ++.+..-....+++..... +........+..|+.++...|
T Consensus       560 ~~~~~~~~q~l~---q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~G  632 (894)
T COG2909         560 KAFNLIREQHLE---QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRG  632 (894)
T ss_pred             HHHHHHHHHHhh---hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcC
Confidence            223222221111   112233333333333333333   6666666666666543321 222222233468999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          430 NFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       430 ~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                      ++++|...+.+......+..  .+.+. +.+..........+|+..+|.....+.
T Consensus       633 dl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         633 DLDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            99999999999888765432  22222 222333334455689999988888774

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3.5e-13  Score=119.06  Aligned_cols=285  Identities=15%  Similarity=0.064  Sum_probs=221.1

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      .+.-....|..++...+|.+|+..+..+++..       |..+..|.+.+..+...|+|++|....++.+++-.      
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-------pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd------  114 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC-------PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD------  114 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC-------ccchhhhchhHHHHHHHHhHhhcccchhhheecCC------
Confidence            34445667788889999999999999998886       44577788899999999999999999988877532      


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------HHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRV--------ITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------l~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (581)
                        .........+.++...++..+|...++..        +...+.....  ..|....+...-+.++...|++++|...-
T Consensus       115 --~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  115 --GFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             --CccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence              22345566677777777777776655421        1111111111  12555666677789999999999998877


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH---------HHHHHHHHH
Q 008016          311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---------ENMRIDLAE  381 (581)
Q Consensus       311 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~~~~la~  381 (581)
                      -..+++        ++....++...|.++...++.+.|+..|++++.+       +|++...         ...+..-|.
T Consensus       193 ~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-------dpdh~~sk~~~~~~k~le~~k~~gN  257 (486)
T KOG0550|consen  193 IDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-------DPDHQKSKSASMMPKKLEVKKERGN  257 (486)
T ss_pred             HHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-------ChhhhhHHhHhhhHHHHHHHHhhhh
Confidence            766654        4566778888899999999999999999999986       4444332         333455677


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (581)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (581)
                      -..+.|++.+|.+.|..+|.+...    +....+..|.+.|.+....|+..+|+.-.+.++.+        ++..+.++.
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall  325 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALL  325 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHH
Confidence            788999999999999999988532    23456778999999999999999999999999986        678888999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          462 HLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .-|.++...++|++|.+.|+++++..
T Consensus       326 ~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  326 RRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999998865

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.60  E-value=3.8e-11  Score=112.53  Aligned_cols=403  Identities=15%  Similarity=0.085  Sum_probs=266.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      +....+.-.|..+...|+-++|.++...++..          ++....++..+|.++....+|++|+.+|..++.+.   
T Consensus        39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~----------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~---  105 (700)
T KOG1156|consen   39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN----------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE---  105 (700)
T ss_pred             ccchhHHhccchhhcccchHHHHHHHHHHhcc----------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC---
Confidence            34455677788888999999999999888764          67777899999999999999999999999998874   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                          ++...++..++.+..+.++++.....-.+.++..        |.....|...+..+...|++..|....+...+..
T Consensus       106 ----~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  106 ----KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             ----CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                5566778999999999999998888777777643        4456778889999999999999999988877665


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      .............+......+....|.+++|.+.+..--..        -.+........+.++...+++++|...+...
T Consensus       174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L  245 (700)
T KOG1156|consen  174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRL  245 (700)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence            43222222333444555566677778877777665543221        1122333445677888888888888888777


Q ss_pred             HHHHHhhccCCCCChHHHH-HHHHHH----------HHHHHc-------------------C-ChHH-------------
Q 008016          356 LRVIKDSNYMSLDDSIMEN-MRIDLA----------ELLHIV-------------------G-RGQE-------------  391 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~-~~~~la----------~~~~~~-------------------g-~~~~-------------  391 (581)
                      +..       .|++..... ....+|          .+|...                   | ++.+             
T Consensus       246 l~r-------nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg  318 (700)
T KOG1156|consen  246 LER-------NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG  318 (700)
T ss_pred             Hhh-------CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence            664       222211110 001111          001000                   0 0000             


Q ss_pred             ----------------HHHHHHHHHHHHHHhcCC-------------CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          392 ----------------GRELLEECLLITEKYKGK-------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       392 ----------------A~~~~~~al~~~~~~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                                      -..++++.+..+...+++             ........+..++.-+...|+++.|..++..|+
T Consensus       319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI  398 (700)
T KOG1156|consen  319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI  398 (700)
T ss_pred             CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence                            000222222222222211             112345667788999999999999999999998


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH-HHHHHHHHcCCChHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD-CLVSIQTRLGEDDTKLLE  521 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~~A~~  521 (581)
                      +        ..|.....+..-|+++...|+.++|..++.++.++.       .++.  .++ ..|.-..+.++.+ +|.+
T Consensus       399 d--------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-------~aDR--~INsKcAKYmLrAn~i~-eA~~  460 (700)
T KOG1156|consen  399 D--------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-------TADR--AINSKCAKYMLRANEIE-EAEE  460 (700)
T ss_pred             c--------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------chhH--HHHHHHHHHHHHccccH-HHHH
Confidence            7        468888889999999999999999999999987743       3332  233 4667777777777 7776


Q ss_pred             HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          522 LLKRVLRIQEREFGS-ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       522 ~~~~a~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ...+--.-.....+. ...........-|..|.++|++..|++-|..+-.+..++.
T Consensus       461 ~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~  516 (700)
T KOG1156|consen  461 VLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWS  516 (700)
T ss_pred             HHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            654432210000000 0112233334558899999999999988877766665543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.58  E-value=1.1e-11  Score=121.48  Aligned_cols=396  Identities=14%  Similarity=0.072  Sum_probs=278.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +..++-.+...+++..|+..|+.++..          +|.+..++..+|.+|...|.+..|+..|.++..+.       |
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~----------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-------P  627 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-------P  627 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcC----------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-------c
Confidence            445888899999999999999999987          89999999999999999999999999999987654       5


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      .....-+..+.+....|+|.+|+..+...+.....- .+.....+.++..++..+...|-..+|..+++++++.+.-...
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            555566778888899999999999999888765432 1122346778888888888889999999999998887654332


Q ss_pred             CCChhhHHHHHHHHHHHH---HcC--------------------CH------HHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          281 TESADLVLPLFSLGSLFI---KEG--------------------KA------VDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~---~~g--------------------~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      ....+....+..+|....   ...                    ..      --|.+++-..+...         .....
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~---------~~~~~  777 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA---------IHMYP  777 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh---------hccch
Confidence            221111122222222111   111                    11      01112222222211         12456


Q ss_pred             HHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          332 MCSLAHAKCA--------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       332 ~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      |+++|.-|..        ..+...|+.++.++++...+       .   ...++.||.+ ...|++.-|..+|-+++.. 
T Consensus       778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-------n---~~~WnaLGVl-sg~gnva~aQHCfIks~~s-  845 (1238)
T KOG1127|consen  778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-------N---EGLWNALGVL-SGIGNVACAQHCFIKSRFS-  845 (1238)
T ss_pred             HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-------c---HHHHHHHHHh-hccchhhhhhhhhhhhhhc-
Confidence            7788877765        22335789999999987433       2   2345667766 6668899998888887654 


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                             .|.....|.|+|.++....+++.|.+.+.++..+        .|.....+...+.+....|+.-++...+...
T Consensus       846 -------ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs  910 (1238)
T KOG1127|consen  846 -------EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHS  910 (1238)
T ss_pred             -------cccchhheeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence                   3555678999999999999999999999988774        5777788888899999999999999988875


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhh
Q 008016          484 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL--RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEK  561 (581)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  561 (581)
                      -+.....  ...+.. ..+.+-.......|+.+ +-+...+++-  .+.-..+-..+|+...++...|.....++.+++|
T Consensus       911 ~el~~~~--gka~~f-~Yw~c~te~h~~Ng~~e-~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a  986 (1238)
T KOG1127|consen  911 DELCSKE--GKAKKF-QYWLCATEIHLQNGNIE-ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAA  986 (1238)
T ss_pred             HHhhccc--cccchh-hHHHHHHHHHHhccchH-HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHH
Confidence            4443211  111221 23344455666677776 6665555432  2222223346789999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008016          562 FPLKKRLSNLRMK  574 (581)
Q Consensus       562 ~~~~~~a~~l~~~  574 (581)
                      .+...+++.+-+.
T Consensus       987 ~ela~RliglLe~  999 (1238)
T KOG1127|consen  987 LELATRLIGLLEL  999 (1238)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.57  E-value=6.2e-12  Score=123.09  Aligned_cols=375  Identities=12%  Similarity=0.058  Sum_probs=247.1

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (581)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (581)
                      ..+...|+..|-+++.+          ++..+.++..||..|...-+...|...|.++.++.       +..+.+.-..+
T Consensus       471 rK~~~~al~ali~alrl----------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-------atdaeaaaa~a  533 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRL----------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-------ATDAEAAAASA  533 (1238)
T ss_pred             hhhHHHHHHHHHHHHhc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------chhhhhHHHHH
Confidence            34577778888787776          78888999999999999889999999999987764       45556667788


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (581)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (581)
                      ..|....+++.|....-.+-+....      ......|..+|..|...+++.+|+..++.++..        +|....++
T Consensus       534 dtyae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W  599 (1238)
T KOG1127|consen  534 DTYAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLW  599 (1238)
T ss_pred             HHhhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHH
Confidence            9999999999998874433322111      123344666899999999999999999999987        67778999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016          291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS  370 (581)
Q Consensus       291 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (581)
                      ..+|.+|...|++..|.+.|.++..+        +|....+.+..+.+....|+|.+|+..+...+......   .+-..
T Consensus       600 ~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e---~~~q~  668 (1238)
T KOG1127|consen  600 LGLGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE---RTGQN  668 (1238)
T ss_pred             HHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHhhh
Confidence            99999999999999999999999875        46666777788889999999999999999888765432   12222


Q ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC------------------------Ch--------------
Q 008016          371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE------------------------HP--------------  412 (581)
Q Consensus       371 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------~~--------------  412 (581)
                      ..+.++..++..+...|=..+|..+++++++.+.-.....                        .|              
T Consensus       669 gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~  748 (1238)
T KOG1127|consen  669 GLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK  748 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            3345556666666677777777777777766543221100                        00              


Q ss_pred             ------------------------HHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016          413 ------------------------SFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (581)
Q Consensus       413 ------------------------~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (581)
                                              .....|++||.-|..        +.+...|+.++++++.+..        .....+
T Consensus       749 ~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a--------nn~~~W  820 (1238)
T KOG1127|consen  749 TGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA--------NNEGLW  820 (1238)
T ss_pred             cccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh--------ccHHHH
Confidence                                    001123344443333        1122345555555555321        112234


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE  540 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~  540 (581)
                      ..||.+ ...|++.-|...|-+.+...        |....++.++|.++....+.+ -|...+.++..+        .|.
T Consensus       821 naLGVl-sg~gnva~aQHCfIks~~se--------p~~~~~W~NlgvL~l~n~d~E-~A~~af~~~qSL--------dP~  882 (1238)
T KOG1127|consen  821 NALGVL-SGIGNVACAQHCFIKSRFSE--------PTCHCQWLNLGVLVLENQDFE-HAEPAFSSVQSL--------DPL  882 (1238)
T ss_pred             HHHHHh-hccchhhhhhhhhhhhhhcc--------ccchhheeccceeEEecccHH-HhhHHHHhhhhc--------Cch
Confidence            444433 33455555555555544321        333345566666666666666 555555555442        356


Q ss_pred             HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          541 VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       541 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      ....+...+.+....|+.-++..+|...-.+..
T Consensus       883 nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~  915 (1238)
T KOG1127|consen  883 NLVQWLGEALIPEAVGRIIERLILFAHSDELCS  915 (1238)
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence            666666666677777777777777766444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=1e-11  Score=107.60  Aligned_cols=384  Identities=14%  Similarity=0.065  Sum_probs=242.6

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH----------HHh
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSG----------IVD  193 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~  193 (581)
                      .+.+++..|+|++|+..|.-+.+.          +...+....+++.+++-.|.|.+|.....++.+          +.-
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~----------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah  132 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK----------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH  132 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc----------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            567889999999999999877642          444566788899999999999999987655321          111


Q ss_pred             hcCCCcchHH----------HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016          194 SLKDDEPLLD----------AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (581)
Q Consensus       194 ~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (581)
                      ++++ ...+.          +-...++.+.+..-.|.+|++.|.+.+.        +.+.....-..++.+|.+..-++-
T Consensus       133 klnd-Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydv  203 (557)
T KOG3785|consen  133 KLND-EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDV  203 (557)
T ss_pred             HhCc-HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhh
Confidence            1111 11111          1234456666777788888888887775        556667777788999999999988


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHH------------
Q 008016          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-----------KIYTKV------------  320 (581)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----------~~~~~~------------  320 (581)
                      +.+.+.--+..        .|+...+.+..+....+.-+-..|+.-.....           .+++..            
T Consensus       204 sqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq  275 (557)
T KOG3785|consen  204 SQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ  275 (557)
T ss_pred             HHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence            88777666654        44445555555555544322222222111111           111100            


Q ss_pred             -cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          321 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       321 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                       +++--.....+..+|+..|.++++..+|..+.+.          +.|..|.   -+...|.+....|+--...+.++-|
T Consensus       276 VLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd----------l~PttP~---EyilKgvv~aalGQe~gSreHlKiA  342 (557)
T KOG3785|consen  276 VLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD----------LDPTTPY---EYILKGVVFAALGQETGSREHLKIA  342 (557)
T ss_pred             hchHHHhhChHhhhhheeeecccccHHHHHHHHhh----------cCCCChH---HHHHHHHHHHHhhhhcCcHHHHHHH
Confidence             0000112345677888889999999998877654          2343332   2355677788888776666666655


Q ss_pred             HHHHHHhcCCC--ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016          400 LLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (581)
Q Consensus       400 l~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (581)
                      -+.+.-. |..  .-++......+|.++.-..++++.+.++...-..+.    .++    ....++++++...|++.+|+
T Consensus       343 qqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~----NdD----~Fn~N~AQAk~atgny~eaE  413 (557)
T KOG3785|consen  343 QQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT----NDD----DFNLNLAQAKLATGNYVEAE  413 (557)
T ss_pred             HHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc----hhhhHHHHHHHHhcChHHHH
Confidence            5544333 221  112233344566677777889998888776554432    222    34578999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      +.|-+.-.       ++-.+.......|+++|.+.++++ -|.+++-+.         ..+.+....+..+|+..++.++
T Consensus       414 elf~~is~-------~~ikn~~~Y~s~LArCyi~nkkP~-lAW~~~lk~---------~t~~e~fsLLqlIAn~CYk~~e  476 (557)
T KOG3785|consen  414 ELFIRISG-------PEIKNKILYKSMLARCYIRNKKPQ-LAWDMMLKT---------NTPSERFSLLQLIANDCYKANE  476 (557)
T ss_pred             HHHhhhcC-------hhhhhhHHHHHHHHHHHHhcCCch-HHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHH
Confidence            99876532       232233344667999999999999 777766542         2234455666778888888888


Q ss_pred             hhhhHHHHHHHHHHHH
Q 008016          558 KEEKFPLKKRLSNLRM  573 (581)
Q Consensus       558 ~~~A~~~~~~a~~l~~  573 (581)
                      +-=|.+.|...-.+.+
T Consensus       477 FyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  477 FYYAAKAFDELEILDP  492 (557)
T ss_pred             HHHHHHhhhHHHccCC
Confidence            8777777776555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=4.2e-11  Score=103.93  Aligned_cols=377  Identities=14%  Similarity=0.086  Sum_probs=244.1

Q ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 008016          127 SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL  206 (581)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  206 (581)
                      .+....+|..|+.+++-.+..         +..+...+-..+|.|++..|+|++|...|+-+...     ++.|  +..+
T Consensus        31 dfls~rDytGAislLefk~~~---------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-----~~~~--~el~   94 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNL---------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-----DDAP--AELG   94 (557)
T ss_pred             HHHhcccchhHHHHHHHhhcc---------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-----CCCC--cccc
Confidence            345678899999988876532         23334566778999999999999999999876542     2222  3456


Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHH----------HHHHHcC--------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVIN----------VLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~----------~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                      .+++.+++-.|.|.+|.....++-+          +..+...        ..-.+...-...++.+.+..-.|.+|++.|
T Consensus        95 vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY  174 (557)
T KOG3785|consen   95 VNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY  174 (557)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999887766521          1111100        000122334456777777788888888888


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC--CCHH
Q 008016          269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN--GNAE  346 (581)
Q Consensus       269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~  346 (581)
                      .+++.-        +|+....-..++.+|.+..-++-+.+.+.--+..        .|+...+.+..+...++.  |+..
T Consensus       175 krvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--------~pdStiA~NLkacn~fRl~ngr~a  238 (557)
T KOG3785|consen  175 KRVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--------FPDSTIAKNLKACNLFRLINGRTA  238 (557)
T ss_pred             HHHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--------CCCcHHHHHHHHHHHhhhhccchh
Confidence            888764        6777777788999999999999887776655543        344444444444444332  3322


Q ss_pred             HH----------------HHHHHH----------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          347 EA----------------VELYKK----------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       347 ~A----------------~~~~~~----------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                      ++                ..+++.          +++.      +++--..+..+..+|+..|..+|+..+|..+.+.  
T Consensus       239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqV------LP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd--  310 (557)
T KOG3785|consen  239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQV------LPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD--  310 (557)
T ss_pred             HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHh------chHHHhhChHhhhhheeeecccccHHHHHHHHhh--
Confidence            22                111111          1111      1111223345667888889999999999887654  


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHcCChHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKL  479 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (581)
                            +   .|.+..-+..-|.+....|+--...+.++-|...+.-..+. ..-+++.....++..++-..++++.+.+
T Consensus       311 ------l---~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y  381 (557)
T KOG3785|consen  311 ------L---DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY  381 (557)
T ss_pred             ------c---CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence                  1   33344456667778888887777777766665544333211 1223444556778888888899998888


Q ss_pred             HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChh
Q 008016          480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKE  559 (581)
Q Consensus       480 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  559 (581)
                      +...-..+    ..++    ....+++.++...|++. +|.++|-+.-       +++-.+.......||.+|...|+++
T Consensus       382 lnSi~sYF----~NdD----~Fn~N~AQAk~atgny~-eaEelf~~is-------~~~ikn~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  382 LNSIESYF----TNDD----DFNLNLAQAKLATGNYV-EAEELFIRIS-------GPEIKNKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHh----cCcc----hhhhHHHHHHHHhcChH-HHHHHHhhhc-------ChhhhhhHHHHHHHHHHHHhcCCch
Confidence            77654433    1222    34678999999999998 8887776543       2333344556678999999999999


Q ss_pred             hhHHHHHHH
Q 008016          560 EKFPLKKRL  568 (581)
Q Consensus       560 ~A~~~~~~a  568 (581)
                      -|.+.+-+.
T Consensus       446 lAW~~~lk~  454 (557)
T KOG3785|consen  446 LAWDMMLKT  454 (557)
T ss_pred             HHHHHHHhc
Confidence            888877543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.54  E-value=2.4e-12  Score=114.78  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      +.....++.+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..++++++..    
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----  100 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----  100 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence            3457788999999999999999999999998873     4455666788999999999999999999999999863    


Q ss_pred             CCCCchHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH--------------HHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENM--------------RIDL  379 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--------------~~~l  379 (581)
                       ++++....++..+|.++...        |++++|+..+++++...       |++.....+              ...+
T Consensus       101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (235)
T TIGR03302       101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-------PNSEYAPDAKKRMDYLRNRLAGKELYV  172 (235)
T ss_pred             -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence             45566667888999999876        88999999999998763       333222111              2367


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      |.+|...|++.+|+..+++++...     ++.|....++..+|.++...|++++|..+++....
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            889999999999999999998874     44577788999999999999999999998877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.53  E-value=2.9e-12  Score=114.19  Aligned_cols=181  Identities=15%  Similarity=0.041  Sum_probs=148.2

Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+.....+..+|..+...|++++|+..+++++..       .|+++....++..+|.++...|++++|+..++++++.. 
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-  100 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-------YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-  100 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-
Confidence            3456778899999999999999999999998876       45555556678999999999999999999999999874 


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH  462 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~  462 (581)
                          ++++....+++.+|.++...        |++++|++.+++++..     .++++....+              ...
T Consensus       101 ----p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~  171 (235)
T TIGR03302       101 ----PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-----YPNSEYAPDAKKRMDYLRNRLAGKELY  171 (235)
T ss_pred             ----cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-----CCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence                45566666788899999876        8899999999999874     2333322222              236


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                      +|..+...|++.+|+..++++++..     |++|....++..+|.++...|+++ +|..+++....
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~-~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKD-LAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Confidence            7889999999999999999998865     566778899999999999999999 99988776544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=7.4e-10  Score=100.11  Aligned_cols=402  Identities=14%  Similarity=0.111  Sum_probs=264.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .+.-|.--..++++..|.++|+.||..          +......+...+.+-+.......|..+++++..+.       |
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdv----------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-------P  138 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDV----------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-------P  138 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhc----------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-------c
Confidence            444444445566666666666666654          34445556666666666666677777777666655       4


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH--------------------------HHHcCCCCHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL--------------------------ESRYGKTSILLVTSLLGMAKV  254 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~~~~~~~~la~~  254 (581)
                      .....|+....+-...|+...|...|++-++..                          ++. ---|| .+..+...+..
T Consensus       139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP-~v~~wikyarF  216 (677)
T KOG1915|consen  139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHP-KVSNWIKYARF  216 (677)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecc-cHHHHHHHHHH
Confidence            444455555555555666666666665543320                          000 01122 24556777888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HH
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY---------------TK  319 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~  319 (581)
                      -...|+..-|...|++|++....     +..........|..-..+..++.|..+|+-|++..               ++
T Consensus       217 E~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK  291 (677)
T KOG1915|consen  217 EEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK  291 (677)
T ss_pred             HHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            88899999999999999987532     33344455556666666777777777777665532               11


Q ss_pred             HcCC---------------------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh-----HHH
Q 008016          320 VYGE---------------------NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS-----IME  373 (581)
Q Consensus       320 ~~~~---------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~  373 (581)
                      .+|.                     ++|....++...-.+-...|+.+.-.+.|++|+...      +|...     ...
T Consensus       292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv------pp~~ekr~W~RYI  365 (677)
T KOG1915|consen  292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV------PPASEKRYWRRYI  365 (677)
T ss_pred             HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CchhHHHHHHHHH
Confidence            1221                     234444566666667777899999999999998752      22111     112


Q ss_pred             HHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          374 NMRIDLAEL-LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (581)
Q Consensus       374 ~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (581)
                      ..+.+.+.. -....+.+.+.++|+.++++.    +..+-..+..+...|.....+.+...|.+.+-.|+..+       
T Consensus       366 YLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c-------  434 (677)
T KOG1915|consen  366 YLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC-------  434 (677)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC-------
Confidence            222232211 135678999999999999864    34456677888888999999999999999999887642       


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  532 (581)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~  532 (581)
                       |.. ........+-.+.++++....+|++.++.        .|....++...|.+-..+|+.+ .|...|+-|+.--  
T Consensus       435 -PK~-KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~Lgdtd-RaRaifelAi~qp--  501 (677)
T KOG1915|consen  435 -PKD-KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTD-RARAIFELAISQP--  501 (677)
T ss_pred             -Cch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHH-HHHHHHHHHhcCc--
Confidence             211 24445566677889999999999998873        3667788999999999999999 8988888776521  


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhhc
Q 008016          533 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKVQ  580 (581)
Q Consensus       533 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~~  580 (581)
                        .-+.|..  .+......-...|.++.|..+|++.++..+-.+-.|+
T Consensus       502 --~ldmpel--lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  502 --ALDMPEL--LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             --ccccHHH--HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence              1123432  3455566777899999999999999988765554443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=1e-08  Score=93.18  Aligned_cols=420  Identities=15%  Similarity=0.105  Sum_probs=269.6

Q ss_pred             HHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHhhc
Q 008016          119 LELFNEVKSMIMMG--NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY-VYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       119 ~~l~~~~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ..+...|..+...|  +...++..++.....       .......+.+...+|..+ ....+.+.|...++++..+.+.+
T Consensus         8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~-------~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i   80 (629)
T KOG2300|consen    8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQF-------QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI   80 (629)
T ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHHHhcc-------CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc
Confidence            34777888888888  788888888877654       222334566677777765 45789999999999999988776


Q ss_pred             CCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH------
Q 008016          196 KDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY------  268 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------  268 (581)
                      +........+...++.+|.... .+..+...+++++++.+..    ....-.....++....-..++..|.+.+      
T Consensus        81 p~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~----p~wsckllfQLaql~~idkD~~sA~elLavga~s  156 (629)
T KOG2300|consen   81 PSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV----PYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES  156 (629)
T ss_pred             ccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC----chhhHHHHHHHHHHHhhhccchhHHHHHhccccc
Confidence            5543444556677888888776 8889999999999875432    1122233444444444444444444332      


Q ss_pred             -------------------------------------------------------------------------------H
Q 008016          269 -------------------------------------------------------------------------------H  269 (581)
Q Consensus       269 -------------------------------------------------------------------------------~  269 (581)
                                                                                                     +
T Consensus       157 Ad~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lk  236 (629)
T KOG2300|consen  157 ADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALK  236 (629)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHH
Confidence                                                                                           1


Q ss_pred             HHHHHHHH-----------hcCCCChhhHH--------HHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHHcCCC--Cc
Q 008016          270 RVITILEL-----------NRGTESADLVL--------PLFSLGSL--FIKEGKAVDAESVFSRILKIYTKVYGEN--DG  326 (581)
Q Consensus       270 ~al~~~~~-----------~~~~~~~~~~~--------~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~  326 (581)
                      +.-+....           .++.+.+....        ++..+..+  -...|-+++|.++-++++...++....+  .+
T Consensus       237 QLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sr  316 (629)
T KOG2300|consen  237 QLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSR  316 (629)
T ss_pred             HHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhH
Confidence            11110000           00111111111        11111111  1234667888888888887766552222  11


Q ss_pred             h----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          327 R----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       327 ~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      -    ....+-+++.+-.-.|++.+|++-...+.+.+.+.....--....+.+..-+|......|.++.|+..|..|.+.
T Consensus       317 ilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~  396 (629)
T KOG2300|consen  317 ILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL  396 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh
Confidence            1    123345667777789999999999999999887631100011223445566777778889999999999999887


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHHcCChHH
Q 008016          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-------ISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~  475 (581)
                      ..+.     .-.+.+-.++|..|...|+-+.-.+.++.        .++.+..       ...+++..|...+.++++.|
T Consensus       397 t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y~~ld~--------i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE  463 (629)
T KOG2300|consen  397 TESI-----DLQAFCNLNLAISYLRIGDAEDLYKALDL--------IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE  463 (629)
T ss_pred             hhHH-----HHHHHHHHhHHHHHHHhccHHHHHHHHHh--------cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence            5432     23456677899999998886554333322        2233211       22345566777788999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016          476 AEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  555 (581)
Q Consensus       476 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  555 (581)
                      |...+.+.+++....  ....-++..+..|+.+....|+.. ++.+....+++..++.  ++.+-.......+-.+|...
T Consensus       464 aK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~-es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a~  538 (629)
T KOG2300|consen  464 AKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTV-ESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQAL  538 (629)
T ss_pred             HHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchH-HHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHHh
Confidence            999999999986322  122334556777899999999999 9999999999998886  45666666777777888888


Q ss_pred             CC--hhhhHHHHHH
Q 008016          556 GR--KEEKFPLKKR  567 (581)
Q Consensus       556 g~--~~~A~~~~~~  567 (581)
                      |+  .++..+.|..
T Consensus       539 g~~~~~~e~e~~~~  552 (629)
T KOG2300|consen  539 GEKGNEMENEAFRK  552 (629)
T ss_pred             CcchhhHHHHHHHH
Confidence            88  5555555543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=3.6e-09  Score=95.77  Aligned_cols=363  Identities=12%  Similarity=0.056  Sum_probs=232.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---------
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI---------  191 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------  191 (581)
                      .+.-+..-++......|..+++.++.+          -|..-..++.....--..|+...|.++|++-...         
T Consensus       110 WlkYae~Emknk~vNhARNv~dRAvt~----------lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~s  179 (677)
T KOG1915|consen  110 WLKYAEFEMKNKQVNHARNVWDRAVTI----------LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLS  179 (677)
T ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHH
Confidence            445555556666666666666666555          2333333443333334445555555544433321         


Q ss_pred             -----------------HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016          192 -----------------VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (581)
Q Consensus       192 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (581)
                                       ++...--||.. ..+...+..-...|+..-|...|++|++....     +..........|..
T Consensus       180 fI~fElRykeieraR~IYerfV~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~f  253 (677)
T KOG1915|consen  180 FIKFELRYKEIERARSIYERFVLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEF  253 (677)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHheecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHH
Confidence                             11111223443 23566677777889999999999999887532     23333444455555


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHH---------------HhcC---------------------CCChhhHHHHHHHHHHHH
Q 008016          255 LGSIGRAKKAVEIYHRVITILE---------------LNRG---------------------TESADLVLPLFSLGSLFI  298 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~---------------~~~~---------------------~~~~~~~~~~~~la~~~~  298 (581)
                      -..+..++.|.-.|+-|++...               +.+|                     .++|..-.++...-.+-.
T Consensus       254 Ee~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e  333 (677)
T KOG1915|consen  254 EERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEE  333 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHH
Confidence            5566666666666665554321               1111                     234555667777777788


Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          299 KEGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      ..|+.+.-.+.|++|+.......... -...+..+.+.+. .-....+.+.+.++|+.++++.      +...-+++.++
T Consensus       334 ~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI------PHkkFtFaKiW  407 (677)
T KOG1915|consen  334 SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI------PHKKFTFAKIW  407 (677)
T ss_pred             hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc------CcccchHHHHH
Confidence            88999999999999987421100000 0001222222221 1235688999999999999983      44566778888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      ...|....++.+...|.+.+..|+..+.+.         ........+-.+.++++....+|++-++.        .|..
T Consensus       408 lmyA~feIRq~~l~~ARkiLG~AIG~cPK~---------KlFk~YIelElqL~efDRcRkLYEkfle~--------~Pe~  470 (677)
T KOG1915|consen  408 LMYAQFEIRQLNLTGARKILGNAIGKCPKD---------KLFKGYIELELQLREFDRCRKLYEKFLEF--------SPEN  470 (677)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhccCCch---------hHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------ChHh
Confidence            889999999999999999999988765321         23444456677889999999999999883        6778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~  529 (581)
                      ..++...|.+-..+|+.+.|...|+-|+.--    ..+-|.  ..+......-...|.++ +|..+|++.++.
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp----~ldmpe--llwkaYIdFEi~~~E~e-kaR~LYerlL~r  536 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQP----ALDMPE--LLWKAYIDFEIEEGEFE-KARALYERLLDR  536 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc----ccccHH--HHHHHhhhhhhhcchHH-HHHHHHHHHHHh
Confidence            8899999999999999999999999887521    112232  22444556666788888 999999988864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.47  E-value=5.9e-10  Score=107.65  Aligned_cols=314  Identities=14%  Similarity=0.070  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .++-.+..+...|++++|++++++....          -.+....+...|.++..+|++++|...+..+++..       
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~----------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------   68 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQ----------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------   68 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhh----------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence            3566777788999999999999876543          56778889999999999999999999999988764       


Q ss_pred             chHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV-EIYHRVIT  273 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~  273 (581)
                      |+....+..+..+.....     +.+.-..+|++......+    .     .+-..+.-.+.....+.... .++...+.
T Consensus        69 Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~----s-----~~~~rl~L~~~~g~~F~~~~~~yl~~~l~  139 (517)
T PF12569_consen   69 PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR----S-----DAPRRLPLDFLEGDEFKERLDEYLRPQLR  139 (517)
T ss_pred             CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc----c-----cchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence            444445555555553222     344445555544332211    1     11111111111112222222 22222221


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--cC------CCCch-HHHHHHHHHHHHHHCCC
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV--YG------ENDGR-VGMAMCSLAHAKCANGN  344 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~------~~~~~-~~~~~~~la~~~~~~g~  344 (581)
                             ..   ++....++-.+|....+..-...++.......+..  +.      ...|. ...+++.+|..|...|+
T Consensus       140 -------Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~  209 (517)
T PF12569_consen  140 -------KG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD  209 (517)
T ss_pred             -------cC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC
Confidence                   12   23344555555654433333333333332222111  00      11222 46778999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (581)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (581)
                      +++|+++++++++.          .|+....+...|.++-..|++.+|...++.+..+.        ...-.+-...+..
T Consensus       210 ~~~Al~~Id~aI~h----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--------~~DRyiNsK~aKy  271 (517)
T PF12569_consen  210 YEKALEYIDKAIEH----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--------LADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--------hhhHHHHHHHHHH
Confidence            99999999999986          34456788999999999999999999999987652        2222344556778


Q ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcC-C-CCc---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016          425 YSRSKNFVEAERLLRICLDIMTKTVG-P-DDQ---SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (581)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (581)
                      +.+.|+.++|...+..-..    ... + .+.   .........|.+|.+.|++..|++.|..+.+.+....
T Consensus       272 ~LRa~~~e~A~~~~~~Ftr----~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~  339 (517)
T PF12569_consen  272 LLRAGRIEEAEKTASLFTR----EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE  339 (517)
T ss_pred             HHHCCCHHHHHHHHHhhcC----CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            8899999999887665432    110 0 011   1122334679999999999999999999999887664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.44  E-value=2e-11  Score=110.95  Aligned_cols=228  Identities=15%  Similarity=0.073  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ..+..+...|..|...|++++|...|.++.+...+.  .+....+..+...+.+|... ++++|+.+++++++++...  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--  107 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence            345556667888999999999999999999988773  34456677788888887666 9999999999999998765  


Q ss_pred             CCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                      ++....+..+..+|.+|... |++++|+++|++|+++++..    ........++..+|.++...|+|++|++.|++...
T Consensus       108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e----~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE----GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT----T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC----CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44456788999999999999 99999999999999999873    34556677888999999999999999999999876


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH--cCChHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKL  479 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~  479 (581)
                      ..... ..........+...+.++...|++..|...+++.......   -.+..-......|...+..  ...+++|+.-
T Consensus       184 ~~l~~-~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  184 KCLEN-NLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             TCCCH-CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---STTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             Hhhcc-cccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            53221 0112234445667788999999999999888887653110   0122333455556655543  3455666666


Q ss_pred             HHHH
Q 008016          480 VLEA  483 (581)
Q Consensus       480 ~~~a  483 (581)
                      |...
T Consensus       260 ~d~~  263 (282)
T PF14938_consen  260 YDSI  263 (282)
T ss_dssp             HTTS
T ss_pred             Hccc
Confidence            5544

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=1.1e-08  Score=96.13  Aligned_cols=348  Identities=12%  Similarity=0.040  Sum_probs=221.3

Q ss_pred             cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (581)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (581)
                      .|+..+-+..|..+....+.. .........|..+|..|...|+.+.|...|+++....    -+.-.+.+.+|...|..
T Consensus       360 e~~~~~~i~tyteAv~~vdP~-ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~----y~~v~dLa~vw~~waem  434 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPK-KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP----YKTVEDLAEVWCAWAEM  434 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcc-cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC----ccchHHHHHHHHHHHHH
Confidence            445555666666655443211 1122344568899999999999999999999998752    12234678889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          255 LGSIGRAKKAVEIYHRVITILEL----NRGTESADL------VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      -....+++.|+.+.++|...-..    .+.+..|..      ..+|...+......|-++.....|++.+++.       
T Consensus       435 Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr-------  507 (835)
T KOG2047|consen  435 ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR-------  507 (835)
T ss_pred             HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-------
Confidence            99999999999999988754221    112222322      3455566777777888888888888888763       


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                       ........|.|..+....-++++.+.|++.+.+++     .|....+...|......-..--+.+.|..+|++|++.+ 
T Consensus       508 -iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk-----~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-  580 (835)
T KOG2047|consen  508 -IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK-----WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-  580 (835)
T ss_pred             -cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-----CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence             22345556778888888889999999999998843     23333334443333333333446899999999999854 


Q ss_pred             HhcCCCChHHHH-HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-----cCChHHHHH
Q 008016          405 KYKGKEHPSFVT-HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-----LNRDKEAEK  478 (581)
Q Consensus       405 ~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~  478 (581)
                            .|..+. .+...|.+-..-|-...|+..|++|-..       -++...   ..+=++|..     -| ...-..
T Consensus       581 ------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-------v~~a~~---l~myni~I~kaae~yG-v~~TR~  643 (835)
T KOG2047|consen  581 ------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-------VKEAQR---LDMYNIYIKKAAEIYG-VPRTRE  643 (835)
T ss_pred             ------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-------CCHHHH---HHHHHHHHHHHHHHhC-CcccHH
Confidence                  244333 4445566666678888888888886542       222211   112222221     12 234466


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 008016          479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK  558 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  558 (581)
                      .|+++++..     |+ ..........+..-.+.|..+ .|...|.-+-++.    .|.  .....+...-..-.+-|+ 
T Consensus       644 iYekaIe~L-----p~-~~~r~mclrFAdlEtklGEid-RARaIya~~sq~~----dPr--~~~~fW~twk~FEvrHGn-  709 (835)
T KOG2047|consen  644 IYEKAIESL-----PD-SKAREMCLRFADLETKLGEID-RARAIYAHGSQIC----DPR--VTTEFWDTWKEFEVRHGN-  709 (835)
T ss_pred             HHHHHHHhC-----Ch-HHHHHHHHHHHHHhhhhhhHH-HHHHHHHhhhhcC----CCc--CChHHHHHHHHHHHhcCC-
Confidence            788888764     22 234455667888889999998 8887777665543    221  222334444455667777 


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 008016          559 EEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       559 ~~A~~~~~~a~~l~~~~  575 (581)
                         .+.+++++++...-
T Consensus       710 ---edT~keMLRikRsv  723 (835)
T KOG2047|consen  710 ---EDTYKEMLRIKRSV  723 (835)
T ss_pred             ---HHHHHHHHHHHHHH
Confidence               45667777776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.44  E-value=1.2e-09  Score=105.50  Aligned_cols=322  Identities=14%  Similarity=0.062  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      ..+++.....++...|++++|+..++......       .+...++-..|.++...|++++|...|...++..       
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I-------~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------   68 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQI-------LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------   68 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------
Confidence            34566677788899999999999998754332       4555677889999999999999999999998852       


Q ss_pred             CHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRIL  314 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al  314 (581)
                       |+....+..+..+.....     +.+.-..+|++....+..   ...|.      .+...+..-.++.. +..++...+
T Consensus        69 -Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~---s~~~~------rl~L~~~~g~~F~~~~~~yl~~~l  138 (517)
T PF12569_consen   69 -PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR---SDAPR------RLPLDFLEGDEFKERLDEYLRPQL  138 (517)
T ss_pred             -CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc---ccchh------HhhcccCCHHHHHHHHHHHHHHHH
Confidence             333555556666553332     344555555554433211   01111      11111111112222 222333332


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC-------CCCChHHHHHHHHHHHHHHHcC
Q 008016          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM-------SLDDSIMENMRIDLAELLHIVG  387 (581)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~~~la~~~~~~g  387 (581)
                      .       ..   +.....++-.+|....+..-...++.......+.....       ...+.....+++.+|..|...|
T Consensus       139 ~-------Kg---vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g  208 (517)
T PF12569_consen  139 R-------KG---VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG  208 (517)
T ss_pred             h-------cC---CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence            2       22   23444555555654433333333333333322221111       1223445667789999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016          388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (581)
Q Consensus       388 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (581)
                      ++++|+++.+++|..        .|.....+...|.++...|++.+|.+.++.+..+        +......-...+..+
T Consensus       209 ~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--------D~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  209 DYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--------DLADRYINSKCAKYL  272 (517)
T ss_pred             CHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------ChhhHHHHHHHHHHH
Confidence            999999999999986        4667789999999999999999999999998774        233333445667888


Q ss_pred             HHcCChHHHHHHHHHHHHHHHHHcCCCChhH---HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          468 YHLNRDKEAEKLVLEALYIREIAFGKDSLPV---GEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       468 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      .+.|+.++|.+.+........  -+..+...   .......|.+|.+.|++. .|+..|..+.+++.....
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~-~ALk~~~~v~k~f~~~~~  340 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDV--DPLSNLNDMQCMWFETECAEAYLRQGDYG-LALKRFHAVLKHFDDFEE  340 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCC--CcccCHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhc
Confidence            899999999988776533110  00011111   122345799999999999 999999999888777643

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=2.3e-09  Score=91.14  Aligned_cols=230  Identities=17%  Similarity=0.136  Sum_probs=166.1

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (581)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (581)
                      ...+++..+|.+|++++..-.+.          .|.....+..+|.||+...++..|...|+++-..       .|....
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er----------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-------~P~~~q   79 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELER----------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-------HPELEQ   79 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ChHHHH
Confidence            34456777889999888776554          7777788999999999999999999999987544       377766


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      .-...+..+++.+.+..|+.......+        ++.....++..-+.+.+..+++..+..+.++.       .+   .
T Consensus        80 YrlY~AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---e  141 (459)
T KOG4340|consen   80 YRLYQAQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---E  141 (459)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---C
Confidence            666778888899999999887765432        22334455556677777888888877665542       11   2


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      ..+....+.|.+.++.|+++.|.+-|+.+++.     ++-.|.   .-++++.++++.|+++.|+++..+.++..-+...
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpl---lAYniALaHy~~~qyasALk~iSEIieRG~r~HP  213 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPL---LAYNLALAHYSSRQYASALKHISEIIERGIRQHP  213 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence            34667888999999999999999999999986     233333   3467899999999999999999988876433200


Q ss_pred             --------CCCCC-----------hHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          365 --------MSLDD-----------SIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       365 --------~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                              .++|.           ..+..+++..+.++.+.|+++.|.+.+.
T Consensus       214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                    01111           1123344556778888899988877654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.41  E-value=3.8e-11  Score=109.09  Aligned_cols=228  Identities=15%  Similarity=0.081  Sum_probs=162.4

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      ..+..+...|..|...|++++|.+.|.++.+...+.  .+....+..+...+.+|... ++++|+.++++++.++...  
T Consensus        33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--  107 (282)
T PF14938_consen   33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--
Confidence            345567777889999999999999999999988774  44456777888888888776 9999999999999998863  


Q ss_pred             CCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        ......+.++..+|.+|... |++++|+++|++|+++++..  ........++..+|.++...|+|++|++.|++...
T Consensus       108 --G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  108 --GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             --T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             --CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence              55677788999999999999 99999999999999999875  23445567888999999999999999999999877


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  523 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~  523 (581)
                      ....... ........+...+.++...|+...|...+++......   +-.+..-...+..|..++.. |+.+     .|
T Consensus       184 ~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~---~F~~s~E~~~~~~l~~A~~~-~D~e-----~f  253 (282)
T PF14938_consen  184 KCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP---SFASSREYKFLEDLLEAYEE-GDVE-----AF  253 (282)
T ss_dssp             TCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST---TSTTSHHHHHHHHHHHHHHT-T-CC-----CH
T ss_pred             Hhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCcHHHHHHHHHHHHHHh-CCHH-----HH
Confidence            4322100 1122334556778889999999999998888755321   11122333455556665543 3333     34


Q ss_pred             HHHHHHHH
Q 008016          524 KRVLRIQE  531 (581)
Q Consensus       524 ~~a~~~~~  531 (581)
                      ..++.-+.
T Consensus       254 ~~av~~~d  261 (282)
T PF14938_consen  254 TEAVAEYD  261 (282)
T ss_dssp             HHHCHHHT
T ss_pred             HHHHHHHc
Confidence            45554443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.40  E-value=1.7e-08  Score=94.98  Aligned_cols=389  Identities=13%  Similarity=0.072  Sum_probs=228.7

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (581)
                      ..|-++-++..|+.-|+.          .|..   .......+...+++++|.+.+...+..-.-.+...+.....|..+
T Consensus       150 ~~~lPets~rvyrRYLk~----------~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el  216 (835)
T KOG2047|consen  150 SHGLPETSIRVYRRYLKV----------APEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL  216 (835)
T ss_pred             hCCChHHHHHHHHHHHhc----------CHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence            344455555555555554          2222   222233455667777777777665443322222223333344444


Q ss_pred             HHHHHhccCHHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC------
Q 008016          210 GSMYSTLENYEKSM---LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG------  280 (581)
Q Consensus       210 ~~~~~~~g~~~~A~---~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------  280 (581)
                      ..+..+.-+.-..+   ...+..+.       .-.......+..||..|...|.+++|...|++++...-....      
T Consensus       217 cdlis~~p~~~~slnvdaiiR~gi~-------rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd  289 (835)
T KOG2047|consen  217 CDLISQNPDKVQSLNVDAIIRGGIR-------RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD  289 (835)
T ss_pred             HHHHHhCcchhcccCHHHHHHhhcc-------cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence            44443332222111   12222222       223345677888888888888888888888777653211100      


Q ss_pred             ---------------------CC--------------------------------ChhhHHHHHHHHHHHHHcCCHHHHH
Q 008016          281 ---------------------TE--------------------------------SADLVLPLFSLGSLFIKEGKAVDAE  307 (581)
Q Consensus       281 ---------------------~~--------------------------------~~~~~~~~~~la~~~~~~g~~~~A~  307 (581)
                                           .+                                +|.....+  +-.+-...|+..+-.
T Consensus       290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW--~kRV~l~e~~~~~~i  367 (835)
T KOG2047|consen  290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW--HKRVKLYEGNAAEQI  367 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH--HhhhhhhcCChHHHH
Confidence                                 00                                01111111  112222345666666


Q ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (581)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (581)
                      ..|.+|+....-..  -.......+..+|..|...|+.+.|...|+++...      .-+....++.+|.+.|..-....
T Consensus       368 ~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V------~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  368 NTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV------PYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             HHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC------CccchHHHHHHHHHHHHHHHhhh
Confidence            66776665421110  12234566888999999999999999999999875      22344556788889999999999


Q ss_pred             ChHHHHHHHHHHHHHHHH----hcCCCChHH------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016          388 RGQEGRELLEECLLITEK----YKGKEHPSF------VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (581)
Q Consensus       388 ~~~~A~~~~~~al~~~~~----~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (581)
                      +++.|.+++++|...-..    .+.+.+|..      ..+|...+++....|-++.-...|++.+++..        .+.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--------aTP  511 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--------ATP  511 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--------CCH
Confidence            999999999988754221    122233322      34556667777778888888888888888632        223


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH---HHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL---VSIQTRLGEDDTKLLELLKRVLRIQEREF  534 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---a~~~~~~g~~~~~A~~~~~~a~~~~~~~~  534 (581)
                      ....+.|..+....-++++.+.|++.+.++      ..|.+.+.++..   .......-+.+ .|..+|+++++.     
T Consensus       512 qii~NyAmfLEeh~yfeesFk~YErgI~LF------k~p~v~diW~tYLtkfi~rygg~klE-raRdLFEqaL~~-----  579 (835)
T KOG2047|consen  512 QIIINYAMFLEEHKYFEESFKAYERGISLF------KWPNVYDIWNTYLTKFIKRYGGTKLE-RARDLFEQALDG-----  579 (835)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHcCCccC------CCccHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHhc-----
Confidence            455677888888888899999999888766      234444444332   22222222345 888888888873     


Q ss_pred             CCCCHHHHHHHH-HHHHHHHHcCChhhhHHHHHHHHH
Q 008016          535 GSESEEVMLTLK-KVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       535 ~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                        .+|....+++ ..+..-.+-|--..|+..|++|..
T Consensus       580 --Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  580 --CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             --CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence              3355554443 345555666888888888888653

>PLN02789 farnesyltranstransferase

Probab=99.40  E-value=5.4e-10  Score=101.86  Aligned_cols=219  Identities=13%  Similarity=0.032  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ...++..+-.++...+++++|+..+.+++.+        .|....++...+.++...| ++++++..+.+++..      
T Consensus        36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------  101 (320)
T PLN02789         36 FREAMDYFRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------  101 (320)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------
Confidence            3344444445566778999999999999986        3555788999999999998 689999999999987      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                        +|....+++..+.++...|+.  ++++.++.++++.        +|....++...+.++...|++++|++++.++++.
T Consensus       102 --npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~  171 (320)
T PLN02789        102 --NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE  171 (320)
T ss_pred             --CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              566677899999999888874  6778888888875        6778899999999999999999999999999987


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIV---GRG----QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----  427 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----  427 (581)
                      .       +.+   ..+++..+.++...   |.+    ++++.+..+++..        .|....+++.++.++..    
T Consensus       172 d-------~~N---~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~  233 (320)
T PLN02789        172 D-------VRN---NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEA  233 (320)
T ss_pred             C-------CCc---hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcc
Confidence            2       222   44667777777665   333    4677777777766        35556688888888877    


Q ss_pred             ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 008016          428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (581)
Q Consensus       428 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (581)
                      .++..+|.+.+.+++.        ..+....++..|+.+|...
T Consensus       234 l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        234 LVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             cccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            3556778888877665        2455566788888888763

>PLN02789 farnesyltranstransferase

Probab=99.39  E-value=9.7e-10  Score=100.20  Aligned_cols=210  Identities=13%  Similarity=-0.015  Sum_probs=163.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      .++...+++++|+..+.+++++        +|....++...+.++...| ++++++..+.+++..        +|....+
T Consensus        45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa  108 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI  108 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence            3344577889999999999988        6777889999999999998 689999999999875        5666778


Q ss_pred             HHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016          332 MCSLAHAKCANGNA--EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       332 ~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      ++..+.++...|+.  ++++.+++++++..       +   ....++...+.++...|++++|++++.++++.       
T Consensus       109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d-------p---kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-------  171 (320)
T PLN02789        109 WHHRRWLAEKLGPDAANKELEFTRKILSLD-------A---KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-------  171 (320)
T ss_pred             hHHHHHHHHHcCchhhHHHHHHHHHHHHhC-------c---ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------
Confidence            99999999888874  67888998988762       2   22557789999999999999999999999886       


Q ss_pred             CChHHHHHHHHHHHHHHHc---cCH----HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRS---KNF----VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEK  478 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~  478 (581)
                       ++....+++..+.+....   |.+    ++++.+..+++.+        .|....++..++.++..    .++..+|..
T Consensus       172 -d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~  242 (320)
T PLN02789        172 -DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDDKEALVSDPEVSS  242 (320)
T ss_pred             -CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence             244456788888777665   333    4677777788774        46666788888888887    355667888


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc
Q 008016          479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  512 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  512 (581)
                      .+.+++.        ..+....++..|+.+|...
T Consensus       243 ~~~~~~~--------~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        243 VCLEVLS--------KDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHhhc--------ccCCcHHHHHHHHHHHHhh
Confidence            8877655        2355557888899999753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.34  E-value=4.8e-08  Score=87.03  Aligned_cols=303  Identities=18%  Similarity=0.133  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      .+.....|..-+..|+|.+|.....+.-+.          .+.....+..-+.+-..+||++.+-.++.++.+..     
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~----------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----  148 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----  148 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence            333555666667889999999988875442          44445556666778888999999999998876642     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      +++.. .+....+.+...+|+++.|..-..+++...        |....++.....+|...|++.+...+..+.-+..  
T Consensus       149 ~~~~l-~v~ltrarlll~~~d~~aA~~~v~~ll~~~--------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--  217 (400)
T COG3071         149 GDDTL-AVELTRARLLLNRRDYPAARENVDQLLEMT--------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--  217 (400)
T ss_pred             CCchH-HHHHHHHHHHHhCCCchhHHHHHHHHHHhC--------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--
Confidence            22333 345778889999999999999999888752        3335566777899999999999988877654431  


Q ss_pred             hcCCCChhhHHHHHHHHH--HHHHcCCHHHHHH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGS--LFIKEGKAVDAES---VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (581)
                      .  -++++... +-+.+.  ++...++-+.+..   +.+..-..   .  .++|..   ...++.-+...|++++|.+..
T Consensus       218 ~--l~~~e~~~-le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~---l--r~~p~l---~~~~a~~li~l~~~~~A~~~i  286 (400)
T COG3071         218 L--LSDEEAAR-LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK---L--RNDPEL---VVAYAERLIRLGDHDEAQEII  286 (400)
T ss_pred             C--CChHHHHH-HHHHHHHHHHHHHhccccchHHHHHHHhccHH---h--hcChhH---HHHHHHHHHHcCChHHHHHHH
Confidence            0  11222222 111111  1222222222222   22211111   1  223433   344677788999999999999


Q ss_pred             HHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHH
Q 008016          353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  432 (581)
Q Consensus       353 ~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  432 (581)
                      +++++..       -|+. ..    .+. -...-++...=++..++.++.        +|+....+..||.++.+.+.+.
T Consensus       287 ~~~Lk~~-------~D~~-L~----~~~-~~l~~~d~~~l~k~~e~~l~~--------h~~~p~L~~tLG~L~~k~~~w~  345 (400)
T COG3071         287 EDALKRQ-------WDPR-LC----RLI-PRLRPGDPEPLIKAAEKWLKQ--------HPEDPLLLSTLGRLALKNKLWG  345 (400)
T ss_pred             HHHHHhc-------cChh-HH----HHH-hhcCCCCchHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHhhHHH
Confidence            9998862       2222 11    111 123456666666666665554        3444478889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      +|..+|+.+++.         ......+..+|.++.+.|+..+|.+.+++++.+.
T Consensus       346 kA~~~leaAl~~---------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         346 KASEALEAALKL---------RPSASDYAELADALDQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHHHHHHHHHhc---------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            999999998873         2223567889999999999999999999998654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=1.3e-08  Score=90.57  Aligned_cols=298  Identities=15%  Similarity=0.105  Sum_probs=202.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (581)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (581)
                      .-|..-+..|+|.+|+....+..+..     +.|..  .+..-+.+-..+|+++.+-.++.++-+..      + .....
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~-----e~p~l--~~l~aA~AA~qrgd~~~an~yL~eaae~~------~-~~~l~  154 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHG-----EQPVL--AYLLAAEAAQQRGDEDRANRYLAEAAELA------G-DDTLA  154 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcC-----cchHH--HHHHHHHHHHhcccHHHHHHHHHHHhccC------C-CchHH
Confidence            33445566899999999988854432     22332  45556778889999999999999887641      1 12355


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      .....+.+....|+++.|..-..++++.        .|....++.....+|...|++.+...++.+.-+..     --+.
T Consensus       155 v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~-----~l~~  221 (400)
T COG3071         155 VELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG-----LLSD  221 (400)
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc-----CCCh
Confidence            6778899999999999999999998887        55567778888999999999999988887765431     1111


Q ss_pred             hHHHHHHHHHHH--HHHCCCHHHHHH---HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHA--KCANGNAEEAVE---LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       327 ~~~~~~~~la~~--~~~~g~~~~A~~---~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                      ....-+-+.+..  +.+.++-..+..   ..+..-..      . ..++.   +...++.-+..+|+.++|.++.+++++
T Consensus       222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~------l-r~~p~---l~~~~a~~li~l~~~~~A~~~i~~~Lk  291 (400)
T COG3071         222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK------L-RNDPE---LVVAYAERLIRLGDHDEAQEIIEDALK  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH------h-hcChh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            222222222211  222222222222   22221111      1 11222   225678888999999999999999887


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      ..      .++.    +..+.. ...-+++..=++..++.+.        .+|+....+..||..+.+.+.|.+|..+++
T Consensus       292 ~~------~D~~----L~~~~~-~l~~~d~~~l~k~~e~~l~--------~h~~~p~L~~tLG~L~~k~~~w~kA~~~le  352 (400)
T COG3071         292 RQ------WDPR----LCRLIP-RLRPGDPEPLIKAAEKWLK--------QHPEDPLLLSTLGRLALKNKLWGKASEALE  352 (400)
T ss_pred             hc------cChh----HHHHHh-hcCCCCchHHHHHHHHHHH--------hCCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            52      2222    111111 2345677776777777666        355556788999999999999999999999


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          482 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       482 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                      .+++..     +    ....+..+|.++.+.|+.. +|.+..++++.+.
T Consensus       353 aAl~~~-----~----s~~~~~~la~~~~~~g~~~-~A~~~r~e~L~~~  391 (400)
T COG3071         353 AALKLR-----P----SASDYAELADALDQLGEPE-EAEQVRREALLLT  391 (400)
T ss_pred             HHHhcC-----C----ChhhHHHHHHHHHHcCChH-HHHHHHHHHHHHh
Confidence            887743     2    2256889999999999999 9999999998554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=5e-08  Score=94.44  Aligned_cols=366  Identities=13%  Similarity=0.108  Sum_probs=217.7

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH------HHHHhhcCCCcch
Q 008016          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMM------SGIVDSLKDDEPL  201 (581)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~~~~  201 (581)
                      |...|+.+.|....+-.               ..-.++.+++..+....+.+-|.-.+-.+      ..+.+...++...
T Consensus       738 yvtiG~MD~AfksI~~I---------------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~  802 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI---------------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED  802 (1416)
T ss_pred             EEEeccHHHHHHHHHHH---------------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence            45678888887644322               12346777777777777777666554221      1111111111111


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                          -...+.+....|..++|..+|++.-.                +-.|-..|...|.+++|.+..+.          .
T Consensus       803 ----eakvAvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~  852 (1416)
T KOG3617|consen  803 ----EAKVAVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------K  852 (1416)
T ss_pred             ----hhHHHHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------c
Confidence                12345566788999999999988754                22345678889999988776542          2


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHcCCCCch---------HHHHHHHHHHHHHHCCCHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK----IYTKVYGENDGR---------VGMAMCSLAHAKCANGNAEEA  348 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A  348 (581)
                      +....-.+|++.+.-+...++.+.|+++|+++-.    +.+-. .++.+.         ....|...|......|+.+.|
T Consensus       853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA  931 (1416)
T KOG3617|consen  853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA  931 (1416)
T ss_pred             cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence            3445567889999999999999999999998632    11111 111110         113355567777788888888


Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (581)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (581)
                      +.+|..|-+.                  +.+.++.+-+|+.++|-.+.++.-             ...+.+.||..|...
T Consensus       932 l~~Y~~A~D~------------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~  980 (1416)
T KOG3617|consen  932 LSFYSSAKDY------------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYEND  980 (1416)
T ss_pred             HHHHHHhhhh------------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhh
Confidence            8888876554                  344556666777777766555421             123566788888888


Q ss_pred             cCHHHHHHHHHHHHHH------HHHhcCCCCcch------HHHHHHHHHHHHHcC-ChHHHHHHHHHH------H-----
Q 008016          429 KNFVEAERLLRICLDI------MTKTVGPDDQSI------SFPMLHLGITLYHLN-RDKEAEKLVLEA------L-----  484 (581)
Q Consensus       429 g~~~~A~~~~~~al~~------~~~~~~~~~~~~------~~~~~~la~~~~~~g-~~~~A~~~~~~a------~-----  484 (581)
                      |+..+|+.+|.+|...      +++..-.+....      ..-....+..|...| +...|..+|.+|      +     
T Consensus       981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen  981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHh
Confidence            8888888887765443      222100000000      000112244444444 555565555432      2     


Q ss_pred             -------HHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHH------HHHHHh-----------cC-----
Q 008016          485 -------YIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVL------RIQERE-----------FG-----  535 (581)
Q Consensus       485 -------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~------~~~~~~-----------~~-----  535 (581)
                             ++..+-+.++  ..+..+...+..+....+++ +|.+++-.+.      ++....           ..     
T Consensus      1061 tqQf~aL~lIa~DLd~~--sDp~ll~RcadFF~~~~qye-kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~ 1137 (1416)
T KOG3617|consen 1061 TQQFSALDLIAKDLDAG--SDPKLLRRCADFFENNQQYE-KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD 1137 (1416)
T ss_pred             hcccHHHHHHHHhcCCC--CCHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC
Confidence                   2211111111  22356788888998888998 8888765543      332211           00     


Q ss_pred             -CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          536 -SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       536 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                       ++......++..+|.+..++|.|..|-+-|.+|=..-.
T Consensus      1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~ 1176 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLS 1176 (1416)
T ss_pred             CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHH
Confidence             11234567889999999999999999998887754433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=6.5e-10  Score=111.65  Aligned_cols=158  Identities=11%  Similarity=0.038  Sum_probs=131.0

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016          299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (581)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (581)
                      ..|....+...+-+++...+.     .+....++.+||.+....|++++|..+++.+++.       .|++   ..+..+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------~Pd~---~~a~~~  125 (694)
T PRK15179         61 RHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-------FPDS---SEAFIL  125 (694)
T ss_pred             HhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------CCCc---HHHHHH
Confidence            344444555555555555433     3556788999999999999999999999999987       3444   456688


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (581)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (581)
                      ++.++.+.+++++|+..+++++..        .|+....+..+|.++.+.|++++|+.+|++++.        .+|+...
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~  189 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFEN  189 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHH
Confidence            999999999999999999998876        466778899999999999999999999999987        3567778


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          459 PMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ++..+|.++...|+.++|...|+++++..
T Consensus       190 ~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        190 GYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999865

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.26  E-value=7.4e-10  Score=113.05  Aligned_cols=361  Identities=15%  Similarity=0.135  Sum_probs=273.4

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      ++......+++.+|...-++++++.+...+.+.|+....+..++..++.....++|+.+-.+.+.+.....+..+|..+.
T Consensus       671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a  750 (1236)
T KOG1839|consen  671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA  750 (1236)
T ss_pred             CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence            36667788999999999999999999999999999999999999888888899999999999998887766666666554


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH---CCCHHH------------------
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA---NGNAEE------------------  347 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~------------------  347 (581)
                      .+.+...+-...|  +-+.+.+..+++...+..+.++...+.+ ..+...+..   ......                  
T Consensus       751 ~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~  827 (1236)
T KOG1839|consen  751 TYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAA  827 (1236)
T ss_pred             hhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhcc
Confidence            4433333322223  6777778888777777666655544433 112111111   000000                  


Q ss_pred             ----------------------------------H--HHHHHHHH--------------------HHHHhhccCCC----
Q 008016          348 ----------------------------------A--VELYKKAL--------------------RVIKDSNYMSL----  367 (581)
Q Consensus       348 ----------------------------------A--~~~~~~al--------------------~~~~~~~~~~~----  367 (581)
                                                        +  .....++.                    ....+......    
T Consensus       828 g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~k  907 (1236)
T KOG1839|consen  828 GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPK  907 (1236)
T ss_pred             CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCC
Confidence                                              0  00000000                    00000000000    


Q ss_pred             -----C------------Ch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Q 008016          368 -----D------------DS--IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS  428 (581)
Q Consensus       368 -----~------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  428 (581)
                           +            .+  ....-....+......|.+.+|.+ ..+++......++..|+.....+..|+.++...
T Consensus       908 s~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~  986 (1236)
T KOG1839|consen  908 SEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL  986 (1236)
T ss_pred             CCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh
Confidence                 0            00  001111234445555677888888 888888888888889999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  508 (581)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  508 (581)
                      |++++|+..-.++.-+.+...+.+++.....+.+++......++...|...+.++..+..-.+|++||..+....++..+
T Consensus       987 ~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l 1066 (1236)
T KOG1839|consen  987 GDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELL 1066 (1236)
T ss_pred             cchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          509 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       509 ~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      +...++.+ .|+.+++.|.....+.+++..-.+...+..+++.....|++..|....+....+..+
T Consensus      1067 ~~~v~e~d-~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1067 LLGVEEAD-TALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred             HhhHHHHH-HHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence            99999999 999999999999999999888888999999999999999999999998888877654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.25  E-value=1e-09  Score=110.18  Aligned_cols=171  Identities=11%  Similarity=0.022  Sum_probs=144.5

Q ss_pred             HHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          117 QLLELFNEVK-SMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       117 ~~~~l~~~~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .-+.++.++. .....|....+...+-+++...+.       .+..+.++..||.+....|.+++|..+++.+.+..   
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---  116 (694)
T PRK15179         47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRR-------YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---  116 (694)
T ss_pred             HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-------ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---
Confidence            3344555553 345666666666666666666555       67779999999999999999999999999998876   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                          |+...+...++.++.+.+++++|...+++++..        .|+....++.+|.++...|++++|+..|++++.. 
T Consensus       117 ----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-  183 (694)
T PRK15179        117 ----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ-  183 (694)
T ss_pred             ----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-
Confidence                777788899999999999999999999999985        3455788999999999999999999999999873 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                             +|+...++..+|.++...|+.++|...|+++++..
T Consensus       184 -------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        184 -------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                   56678899999999999999999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.24  E-value=2.8e-09  Score=90.60  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 008016          168 IALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS  247 (581)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  247 (581)
                      -+..|+..|+++......++...      +..            -+...++.++++..+++++..        .|.....
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~------~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~~   75 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD------PLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSEQ   75 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC------ccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHHH
Confidence            35568889998887554422110      000            111366778888889888875        3445778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHHcCCC
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGK--AVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      |..+|.+|...|++++|+..|++++.+        .|+...++..+|.++ ...|+  +++|...++++++.        
T Consensus        76 w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--------  139 (198)
T PRK10370         76 WALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--------  139 (198)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--------
Confidence            999999999999999999999999998        566788899999974 67787  59999999999986        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +|....++.++|..+...|++++|+.+++++++.
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5667789999999999999999999999999997

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.23  E-value=6.2e-11  Score=84.42  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=71.8

Q ss_pred             ChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          495 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       495 ~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      ||+++.++.++|.+|...|+++ +|+++|++++++ .+..++.++..+.++.++|.++..+|++++|++++++++++.++
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~-~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k   78 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYD-EALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK   78 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HH-HHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence            6888999999999999999999 999999999999 67778888889999999999999999999999999999999875

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.23  E-value=8e-11  Score=83.87  Aligned_cols=77  Identities=30%  Similarity=0.352  Sum_probs=70.3

Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (581)
                      ||..+.++.++|.+|..+|++++|+.+|++++++ .+..+++++.++.++.++|.++...|++++|++++++++++.+
T Consensus         1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~   77 (78)
T PF13424_consen    1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE   77 (78)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence            5788899999999999999999999999999999 6666777888899999999999999999999999999999875

...

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=5.7e-07  Score=87.43  Aligned_cols=252  Identities=14%  Similarity=0.119  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHH----HHHHhhcCCCcchH---------HHHHHHHHHHHHhccCHHHHHHH
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMM----SGIVDSLKDDEPLL---------DAILLHMGSMYSTLENYEKSMLV  225 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~  225 (581)
                      .....++++.+.-+...+|.+.|+++|+++    .++.+.+.++.+.+         ...|..-|......|+.+.|+.+
T Consensus       855 iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~  934 (1416)
T KOG3617|consen  855 IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSF  934 (1416)
T ss_pred             eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHH
Confidence            334567788888888889999999998873    22332222222221         12345566777778888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Q 008016          226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD  305 (581)
Q Consensus       226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  305 (581)
                      |..|-+.                +.+..+.+-+|+.++|-...++.-             ...+.+.||..|...|++.+
T Consensus       935 Y~~A~D~----------------fs~VrI~C~qGk~~kAa~iA~esg-------------d~AAcYhlaR~YEn~g~v~~  985 (1416)
T KOG3617|consen  935 YSSAKDY----------------FSMVRIKCIQGKTDKAARIAEESG-------------DKAACYHLARMYENDGDVVK  985 (1416)
T ss_pred             HHHhhhh----------------hhheeeEeeccCchHHHHHHHhcc-------------cHHHHHHHHHHhhhhHHHHH
Confidence            8776543                333344444555555444333211             12344556666666666666


Q ss_pred             HHHHHHHHHHH------HHHHc------------CCCC-chHHHHHHH-------HHHHHHHCCCHHHHHHHHHH-----
Q 008016          306 AESVFSRILKI------YTKVY------------GEND-GRVGMAMCS-------LAHAKCANGNAEEAVELYKK-----  354 (581)
Q Consensus       306 A~~~~~~al~~------~~~~~------------~~~~-~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~-----  354 (581)
                      |+.+|.+|...      +++.-            ++.+ ...+..|-.       -..+|.+.|.+.+|+++.-+     
T Consensus       986 Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen  986 AVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence            66666554322      21110            0000 000011111       11234455555555554322     


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH------HHHHHHHHh-----------cC------CCC
Q 008016          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE------ECLLITEKY-----------KG------KEH  411 (581)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~-----------~~------~~~  411 (581)
                      ++++..+....+.|    ...+..-+..+....+|++|..++-      .|+.++...           ..      .+.
T Consensus      1066 aL~lIa~DLd~~sD----p~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSD----PKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred             HHHHHHHhcCCCCC----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence            34443332112222    3344667888888899999988764      444444221           00      111


Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      .....++..+|.+..++|.|..|-+-|.+|-+
T Consensus      1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence            23446788899999999999999888877644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.20  E-value=6.8e-10  Score=89.23  Aligned_cols=110  Identities=16%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (581)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (581)
                      ..++++++++        +|..   +..+|.++...|++++|...|++++..        +|....++..+|.++...|+
T Consensus        13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence            3567777776        3443   557899999999999999999999875        56778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      +++|+..|++++..       .|++   ...+.++|.++...|++++|+..|++++.+.
T Consensus        74 ~~~A~~~y~~Al~l-------~p~~---~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         74 YTTAINFYGHALML-------DASH---PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHhc-------CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999986       3333   4466899999999999999999999999873

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.18  E-value=6.9e-10  Score=89.21  Aligned_cols=125  Identities=13%  Similarity=0.054  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhcc
Q 008016          138 IDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE  217 (581)
Q Consensus       138 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  217 (581)
                      ..+++++++.          .|..   +..+|.++...|++++|...++.++...       |....++..+|.++...|
T Consensus        13 ~~~~~~al~~----------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         13 EDILKQLLSV----------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQ-------PWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHHHHHHc----------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHh
Confidence            3566777765          5553   5578999999999999999999987653       666778999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 008016          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (581)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (581)
                      ++++|+..|++++.+        .|....++.++|.++...|++++|+..|++++.+        .|.....+.+.+.+.
T Consensus        73 ~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--------~p~~~~~~~~~~~~~  136 (144)
T PRK15359         73 EYTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--------SYADASWSEIRQNAQ  136 (144)
T ss_pred             hHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHH
Confidence            999999999999985        2345788999999999999999999999999998        445555666666554


Q ss_pred             H
Q 008016          298 I  298 (581)
Q Consensus       298 ~  298 (581)
                      .
T Consensus       137 ~  137 (144)
T PRK15359        137 I  137 (144)
T ss_pred             H
Confidence            3

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=99.15  E-value=1.9e-08  Score=103.06  Aligned_cols=370  Identities=16%  Similarity=0.133  Sum_probs=263.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016          168 IALGYVYIGDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (581)
Q Consensus       168 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (581)
                      ++......|++.+|...-+.+.++.+. ++.+.|+....+..++..++....+.+|+.+-.+.+.+.-...+..++..+.
T Consensus       671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a  750 (1236)
T KOG1839|consen  671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA  750 (1236)
T ss_pred             CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence            355666778888887777777665543 4667888888888888777777888999999999998887776666665443


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---cCCH--------------------
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK---EGKA--------------------  303 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~--------------------  303 (581)
                      .+.+....-...|  +-+.+....+++-..+..+.++...+.+ ..+...+..   ....                    
T Consensus       751 ~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~  827 (1236)
T KOG1839|consen  751 TYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAA  827 (1236)
T ss_pred             hhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccccCCCccchHHHHhhhhhhhhhhcc
Confidence            3322222221122  4555555555555444444333332222 111111111   0000                    


Q ss_pred             ----------------------------------HHHHHHHHHHHH--------------------HHHHH--cCCC---
Q 008016          304 ----------------------------------VDAESVFSRILK--------------------IYTKV--YGEN---  324 (581)
Q Consensus       304 ----------------------------------~~A~~~~~~al~--------------------~~~~~--~~~~---  324 (581)
                                                        ........++..                    ...+.  +..+   
T Consensus       828 g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~k  907 (1236)
T KOG1839|consen  828 GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPK  907 (1236)
T ss_pred             CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCC
Confidence                                              000000111000                    00000  0000   


Q ss_pred             ------------------Cc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 008016          325 ------------------DG--RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (581)
Q Consensus       325 ------------------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (581)
                                        .|  ..+.-....+......|.+.+|.+ .-+++......  .+.-++.....+..++.++.
T Consensus       908 s~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--~~~~h~~~~~~~~~La~l~~  984 (1236)
T KOG1839|consen  908 SEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--MGVLHPEVASKYRSLAKLSN  984 (1236)
T ss_pred             CCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--hhhcchhHHHHHHHHHHHHh
Confidence                              01  011222334555566777787877 66666666543  45557778889999999999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      ..|+.++|+..-.++.-+.++..|.+++.....+.+++......++...|...+.++..+..-..++++|..+.+..+++
T Consensus       985 ~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle 1064 (1236)
T KOG1839|consen  985 RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLE 1064 (1236)
T ss_pred             hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888889999999989999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 008016          465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  544 (581)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  544 (581)
                      .++...++++.|+.+.+.|....+...|+.+..++..+..+++.+...+++. .|....+....++...++++++.....
T Consensus      1065 ~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr-~al~~ek~t~~iy~~qlg~~hsrt~~S 1143 (1236)
T KOG1839|consen 1065 LLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR-NALEHEKVTYGIYKEQLGPDHSRTKES 1143 (1236)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH-HHHHHHhhHHHHHHHhhCCCcccchhh
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999988765444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.14  E-value=5.2e-09  Score=88.02  Aligned_cols=165  Identities=16%  Similarity=0.150  Sum_probs=136.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .|++..+ ..++..+...|+-+.+..+..+....       ++....++..+|......|++.+|+..++++...     
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            6666677 88899999999999888887774332       3444455666999999999999999999999875     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                         .|....++..+|.+|.+.|++++|..-|.+++++        .+....+.+++|..|.-.|+++.|..++..+... 
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-  197 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-  197 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence               2345788999999999999999999999999998        3444678899999999999999999999988753 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                             .+....+..+++.+...+|++++|.....+
T Consensus       198 -------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 -------PAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             -------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence                   233456778999999999999999887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.14  E-value=1.6e-08  Score=85.94  Aligned_cols=150  Identities=11%  Similarity=0.096  Sum_probs=114.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (581)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (581)
                      -+..|...|+++......++..       ++..            -+...++.++++..+++++..       .|++   
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~-------~~~~------------~~~~~~~~~~~i~~l~~~L~~-------~P~~---   72 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA-------DPLH------------QFASQQTPEAQLQALQDKIRA-------NPQN---   72 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh-------Cccc------------cccCchhHHHHHHHHHHHHHH-------CCCC---
Confidence            3567888999887644432111       1110            111266778888888888876       3444   


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHccC--HHHHHHHHHHHHHHHHHhc
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-YSRSKN--FVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~--~~~A~~~~~~al~~~~~~~  449 (581)
                      ...|..+|.+|...|++++|+..|++++.+.        |+...++..+|.+ +...|+  +++|...++++++.     
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~-----  139 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL-----  139 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-----
Confidence            4567899999999999999999999999873        4556678889986 467777  59999999999984     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                         +|....++..+|..+...|++++|+.+++++++..
T Consensus       140 ---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        140 ---DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             ---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence               57777899999999999999999999999998864

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.13  E-value=3.5e-09  Score=101.19  Aligned_cols=227  Identities=16%  Similarity=0.144  Sum_probs=169.8

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      |........++..+...|-..+|+..+++.                ..+.....+|...|+..+|.....+-++      
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~le------  452 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELE------  452 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhc------
Confidence            334445677889999999999998888764                3355667888899999999888776554      


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                         .+..+..|..+|.+...       -.+|+++.++.+..       .+.+...+|......++|+++.+.++..+++ 
T Consensus       453 ---k~~d~~lyc~LGDv~~d-------~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~-  514 (777)
T KOG1128|consen  453 ---KDPDPRLYCLLGDVLHD-------PSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI-  514 (777)
T ss_pred             ---CCCcchhHHHhhhhccC-------hHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc-
Confidence               12234455555555544       44555555543221       2335556666667789999999999999887 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                               .+....+|+.+|.+..+.+++..|.+.|..++..        .|+...++++++..|...|+-.+|...++
T Consensus       515 ---------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~  577 (777)
T KOG1128|consen  515 ---------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLK  577 (777)
T ss_pred             ---------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence                     3444667899999999999999999999998876        46778899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (581)
                      ++++.        +......+.|...+..+.|.+++|++.+.+.+.+.....
T Consensus       578 EAlKc--------n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  578 EALKC--------NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             HHhhc--------CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            99883        233344566777788899999999999999988776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.11  E-value=1.8e-09  Score=103.06  Aligned_cols=227  Identities=20%  Similarity=0.214  Sum_probs=173.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      |........++..+...|-...|...+++.                ..+.....+|...|+..+|..+..+-++.     
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl----------------emw~~vi~CY~~lg~~~kaeei~~q~lek-----  453 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------------EMWDPVILCYLLLGQHGKAEEINRQELEK-----  453 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------------HHHHHHHHHHHHhcccchHHHHHHHHhcC-----
Confidence            444556677899999999999998888764                33556778889999999998887775551     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        .+++           ..|...||.-.--.+|+++.++.+..       .+.+...+|......++|+++.++++.+++
T Consensus       454 --~~d~-----------~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~  513 (777)
T KOG1128|consen  454 --DPDP-----------RLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLE  513 (777)
T ss_pred             --CCcc-----------hhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhh
Confidence              1222           23444555555556666666665433       233556667777778999999999999998


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  523 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~  523 (581)
                      +        +|-...+|+.+|.+..+.++++.|.+.|..++...        |+...++++++..|.+.|+.. +|...+
T Consensus       514 ~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~-ra~~~l  576 (777)
T KOG1128|consen  514 I--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKK-RAFRKL  576 (777)
T ss_pred             c--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhH-HHHHHH
Confidence            6        56677799999999999999999999999887643        556689999999999999998 999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          524 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       524 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ++|++-.        .....++.+-..+..+.|.+++|++.+.+.+.+..+..
T Consensus       577 ~EAlKcn--------~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  577 KEALKCN--------YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             HHHhhcC--------CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence            9998742        23345566666777899999999999999999887654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.11  E-value=8.6e-08  Score=82.35  Aligned_cols=183  Identities=17%  Similarity=0.176  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...++..|...+..|++.+|+..|++....       -+.++....+...+|.+++..|+++.|+..+++.+...    +
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----P   73 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----P   73 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----C
Confidence            456899999999999999999999999876       35578888999999999999999999999999988876    6


Q ss_pred             CcchHHHHHHHHHHHHHhccC-----------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLEN-----------YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVE  266 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  266 (581)
                      .++....+++.+|.+++....           ..+|+..|+..+...     |+                 .....+|..
T Consensus        74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~-----------------S~y~~~A~~  131 (203)
T PF13525_consen   74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PN-----------------SEYAEEAKK  131 (203)
T ss_dssp             T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TT-----------------STTHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cC-----------------chHHHHHHH
Confidence            778888889999998765532           224444444444332     12                 222233333


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHH
Q 008016          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  346 (581)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  346 (581)
                      ....+.+.           .+.--..+|..|.+.|.+..|...++.+++.+     ++.+....++..++..|...|..+
T Consensus       132 ~l~~l~~~-----------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  132 RLAELRNR-----------LAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHH-----------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence            33222222           12334457888888888888888888888764     455667778888888888888877


Q ss_pred             HHH
Q 008016          347 EAV  349 (581)
Q Consensus       347 ~A~  349 (581)
                      .|.
T Consensus       196 ~a~  198 (203)
T PF13525_consen  196 AAD  198 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=5.9e-09  Score=87.68  Aligned_cols=164  Identities=17%  Similarity=0.126  Sum_probs=133.6

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      |....+ ..++..+...|+-+.+..+..++...        ++.....+..+|......|++.+|+..++++...     
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----  129 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----  129 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----
Confidence            444455 77888889999998888888776542        2333445555899999999999999999999887     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                         .|....+++.+|.+|.+.|++++|...|.+++++.        +......+|+|..|.-.|+++.|..++..+... 
T Consensus       130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-  197 (257)
T COG5010         130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-  197 (257)
T ss_pred             ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence               67778999999999999999999999999999983        334467899999999999999999999998764 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                            ++.+.   .+..|++.+....|++++|.....+
T Consensus       198 ------~~ad~---~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         198 ------PAADS---RVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             ------CCCch---HHHHHHHHHHhhcCChHHHHhhccc
Confidence                  22232   3458999999999999999887554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.11  E-value=3.7e-08  Score=99.96  Aligned_cols=249  Identities=14%  Similarity=0.051  Sum_probs=170.9

Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      +.-.|....++..+...+...|++++|+..++.+++.        +|.....++.+|.++...+++.++...  .++...
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~   93 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF   93 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence            4556777888999999999999999999999988774        455678888999999999998888766  555543


Q ss_pred             HHhcC-----------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016          276 ELNRG-----------TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (581)
Q Consensus       276 ~~~~~-----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (581)
                      .....           .+.+..-.++..+|.+|-.+|+.++|...++++++.        +|..+.+++++|..|... +
T Consensus        94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-h
Confidence            22100           012333468889999999999999999999999986        477889999999999999 9


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (581)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (581)
                      .++|+.++.+|+...-..    .........|..  .+.....+.+.=..+.++.+...      ........+.-+=..
T Consensus       165 L~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k--~~~~~~~d~d~f~~i~~ki~~~~------~~~~~~~~~~~l~~~  232 (906)
T PRK14720        165 KEKAITYLKKAIYRFIKK----KQYVGIEEIWSK--LVHYNSDDFDFFLRIERKVLGHR------EFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHHHHHHHhh----hcchHHHHHHHH--HHhcCcccchHHHHHHHHHHhhh------ccchhHHHHHHHHHH
Confidence            999999999998875431    111111112211  12222333333333333322221      123344556666678


Q ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      |...+++++++.+++.+++.        .+....+...++.+|.  +.|.. ...+++.+++
T Consensus       233 y~~~~~~~~~i~iLK~iL~~--------~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~  283 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEH--------DNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM  283 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhc--------CCcchhhHHHHHHHHH--HHccC-cchHHHHHHH
Confidence            89999999999999999985        3444556778888877  33333 4444444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=7.7e-06  Score=75.02  Aligned_cols=379  Identities=16%  Similarity=0.119  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ++..+....-..|+..|++.+.-..+...      .........+..+  +.+.....+..+...+...+..+.+....+
T Consensus       130 lfQLaql~~idkD~~sA~elLavga~sAd------~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd  203 (629)
T KOG2300|consen  130 LFQLAQLHIIDKDFPSALELLAVGAESAD------HICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD  203 (629)
T ss_pred             HHHHHHHHhhhccchhHHHHHhccccccc------hhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence            77788888888899999887543222111      1112223333333  334445556777777777777776655444


Q ss_pred             cchH--H-HHHHHHH-HHHHhccCHHHHHHHHHHHHHHHHHH-----------cCCCCHHHH--------HHHHHHHHH-
Q 008016          199 EPLL--D-AILLHMG-SMYSTLENYEKSMLVYQRVINVLESR-----------YGKTSILLV--------TSLLGMAKV-  254 (581)
Q Consensus       199 ~~~~--~-~~~~~l~-~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~~~~--------~~~~~la~~-  254 (581)
                      ....  . ..+..+- ..|...|+...+....++.-......           ++.+.+...        .++..+-.+ 
T Consensus       204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~  283 (629)
T KOG2300|consen  204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI  283 (629)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence            3221  1 1122232 33556788888877777554433222           222222211        122222111 


Q ss_pred             -HHhcCCHHHHHHHHHHHHHHHHHhcCCC--Ch----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC--C
Q 008016          255 -LGSIGRAKKAVEIYHRVITILELNRGTE--SA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN--D  325 (581)
Q Consensus       255 -~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~  325 (581)
                       -...|-+++|.++-++++...++....+  .+    -....+-.+..+-.-.|++.+|++-...+.+.+.+..++-  .
T Consensus       284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr  363 (629)
T KOG2300|consen  284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR  363 (629)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence             2245888999999999998876653333  11    1123445667777889999999999999998877652211  1


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (581)
                      ...+.....+|......|.++.|...|..+.+....       ....+.+-.++|.+|.+.|+-+.-.+.++..      
T Consensus       364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i------  430 (629)
T KOG2300|consen  364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------IDLQAFCNLNLAISYLRIGDAEDLYKALDLI------  430 (629)
T ss_pred             HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------HHHHHHHHHhHHHHHHHhccHHHHHHHHHhc------
Confidence            124555667788888889999999999999887543       3445666789999999988766544443321      


Q ss_pred             hcCCCC-------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016          406 YKGKEH-------PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       406 ~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                        ++.+       .....+++..|.....++++.||...+.+.+++....  +...-++..+.-|+.+....|+..++.+
T Consensus       431 --~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~n  506 (629)
T KOG2300|consen  431 --GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRN  506 (629)
T ss_pred             --CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence              2221       1234566777888889999999999999999975221  1223345566778999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC--ChHHHHHHHHH
Q 008016          479 LVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE--DDTKLLELLKR  525 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~~A~~~~~~  525 (581)
                      ..+-+++..++.  +|++...-....+-.++...|+  .+ ...+.+.+
T Consensus       507 mvrpamqlAkKi--~Di~vqLws~si~~~L~~a~g~~~~~-~e~e~~~~  552 (629)
T KOG2300|consen  507 MVRPAMQLAKKI--PDIPVQLWSSSILTDLYQALGEKGNE-MENEAFRK  552 (629)
T ss_pred             ccchHHHHHhcC--CCchHHHHHHHHHHHHHHHhCcchhh-HHHHHHHH
Confidence            999999998876  6777665556667778888887  33 44444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.10  E-value=4.7e-08  Score=99.27  Aligned_cols=148  Identities=12%  Similarity=0.096  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...+...+..+...+++++|+.+++.+++.          .|.....++.+|.++.+.+++.++.-.  .+..       
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~-------   91 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKE----------HKKSISALYISGILSLSRRPLNDSNLL--NLID-------   91 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------
Confidence            344666777777899999999999988776          788888888899888888886666444  2222       


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                                    ......++.-...++...+..         +..-.+++.+|.+|-.+|+.++|...++++++.   
T Consensus        92 --------------~~~~~~~~~~ve~~~~~i~~~---------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---  145 (906)
T PRK14720         92 --------------SFSQNLKWAIVEHICDKILLY---------GENKLALRTLAEAYAKLNENKKLKGVWERLVKA---  145 (906)
T ss_pred             --------------hcccccchhHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---
Confidence                          222222332122222222221         222346777777777777777777777777776   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                           +|..+.+++++|..|... ++++|+.++.+|+..
T Consensus       146 -----D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        146 -----DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             -----CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence                 456667777777777777 777777777777665

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.08  E-value=2.4e-07  Score=81.48  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..++..|......|++++|+..|++.+..       .+..+....+...+|.+++..+++++|+..+++.++..    ++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-------yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----P~  101 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----PT  101 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----cC
Confidence            34778899999999999999999999876       44467777788999999999999999999999998875    77


Q ss_pred             cchHHHHHHHHHHHHHhcc---------------C---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016          199 EPLLDAILLHMGSMYSTLE---------------N---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR  260 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  260 (581)
                      +|....+++.+|.++...+               +   ..+|+..+++.++..     |+++..                
T Consensus       102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya----------------  160 (243)
T PRK10866        102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT----------------  160 (243)
T ss_pred             CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH----------------
Confidence            7888889999998764443               1   124445555555432     222222                


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (581)
                       .+|...+..+...           .+.--..+|..|.+.|.+..|+.-++.+++.+     ++.+....++..++..|.
T Consensus       161 -~~A~~rl~~l~~~-----------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~  223 (243)
T PRK10866        161 -TDATKRLVFLKDR-----------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYR  223 (243)
T ss_pred             -HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHH
Confidence             2222222222111           12233467888888999999998888888765     556778888888999999


Q ss_pred             HCCCHHHHHHHHHH
Q 008016          341 ANGNAEEAVELYKK  354 (581)
Q Consensus       341 ~~g~~~~A~~~~~~  354 (581)
                      ..|..++|......
T Consensus       224 ~lg~~~~a~~~~~~  237 (243)
T PRK10866        224 QLQLNAQADKVAKI  237 (243)
T ss_pred             HcCChHHHHHHHHH
Confidence            99998888776543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.07  E-value=6.4e-08  Score=83.12  Aligned_cols=167  Identities=19%  Similarity=0.142  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (581)
                      ....+...|..+...|++.+|+..|++.+...       |..+....+...+|.++...|++++|+..+++.+...    
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y----   72 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY----   72 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            34667888999999999999999999998873       5566777888999999999999999999999998875    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHH
Q 008016          408 GKEHPSFVTHLLNLAASYSRSK-----------NFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLH  462 (581)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~  462 (581)
                       +.++....+++.+|.++..+.           ...+|+..|+..+..+     |+++....+              -..
T Consensus        73 -P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~  146 (203)
T PF13525_consen   73 -PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELY  146 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence             667778888888888876543           3347777777776643     344333222              234


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      +|..|.+.|.+..|+..++.+++.+     |+.+....++..++..|.++|...
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChH
Confidence            6889999999999999999999877     777888889999999999999876

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=5.4e-07  Score=75.36  Aligned_cols=195  Identities=15%  Similarity=0.181  Sum_probs=150.2

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (581)
                      ...+.++-+++..+.+.-.+..    ...++.-.++..+..+....|+.+.|..++.++...+       |....+...-
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~----~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~lk   92 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSG----ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKLK   92 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhc----ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHHH
Confidence            3456677777777776654432    2356677778888888899999999999999877655       2333344556


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (581)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (581)
                      |..+...|++++|+++|+..++        ++|....++..--.+...+|+--+|++.+...++.+        +....+
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EA  156 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEA  156 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHH
Confidence            7888899999999999998876        445555556666667778899999999998888874        445789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHH
Q 008016          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVELYKKALRVI  359 (581)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  359 (581)
                      |..++.+|...|+|++|.-++++.+-+        .|........+|.+++-+|   ++.-|.++|.+++++.
T Consensus       157 W~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  157 WHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999865        4556666777888877766   5677999999999984

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=7e-08  Score=82.33  Aligned_cols=224  Identities=17%  Similarity=0.098  Sum_probs=162.4

Q ss_pred             HHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016          173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (581)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (581)
                      .+..+|.+|++++....       +..|.....+..+|.+|+...+|..|..+|++.-..        .|.........+
T Consensus        21 I~d~ry~DaI~~l~s~~-------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSEL-------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHH-------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHH
Confidence            44567777877776543       334655667889999999999999999999987664        455566677778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (581)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (581)
                      ..+++.+.+..|+.......+        +......++..-+.+....+++..+..+.++.-          ....+...
T Consensus        86 QSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp----------~en~Ad~~  147 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP----------SENEADGQ  147 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhcc----------CCCccchh
Confidence            899999999999887765432        122233455555677778888888876665431          12456678


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----  408 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----  408 (581)
                      .+.|-+.++.|++++|..-|+.+++.       +.-.+.++   ++++.++.+.|+++.|+++..+.++...+...    
T Consensus       148 in~gCllykegqyEaAvqkFqaAlqv-------sGyqpllA---YniALaHy~~~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  148 INLGCLLYKEGQYEAAVQKFQAALQV-------SGYQPLLA---YNLALAHYSSRQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             ccchheeeccccHHHHHHHHHHHHhh-------cCCCchhH---HHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            89999999999999999999999986       33344433   78999999999999999999988876543311    


Q ss_pred             ------CC-----C------hHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          409 ------KE-----H------PSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       409 ------~~-----~------~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                            .+     +      .....+++..+.++.+.|+++.|.+.+.
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                  00     0      1123455666778889999998877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.05  E-value=2.7e-07  Score=81.13  Aligned_cols=187  Identities=13%  Similarity=0.070  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      ..++..|..+...|++++|+..|++++...     +..+....+...+|.++...+++++|+..+++.++..     +++
T Consensus        33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~~  102 (243)
T PRK10866         33 SEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTH  102 (243)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cCC
Confidence            346778889999999999999999998853     4567777888999999999999999999999999984     668


Q ss_pred             hhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          284 ADLVLPLFSLGSLFIKEG---------------K---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                      |....+++.+|.++...+               +   ..+|...|++.++.+     |+++..                 
T Consensus       103 ~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya-----------------  160 (243)
T PRK10866        103 PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYT-----------------  160 (243)
T ss_pred             CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhH-----------------
Confidence            888899999998865443               1   234555555555543     222222                 


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY  425 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  425 (581)
                      .+|...+..+....             +.--..+|..|.+.|++..|+.-++.+++.+     ++.+....++..++..|
T Consensus       161 ~~A~~rl~~l~~~l-------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay  222 (243)
T PRK10866        161 TDATKRLVFLKDRL-------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY  222 (243)
T ss_pred             HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH
Confidence            22222222222211             1112467888888899988888888887765     55677778888888999


Q ss_pred             HHccCHHHHHHHHHH
Q 008016          426 SRSKNFVEAERLLRI  440 (581)
Q Consensus       426 ~~~g~~~~A~~~~~~  440 (581)
                      ...|..++|......
T Consensus       223 ~~lg~~~~a~~~~~~  237 (243)
T PRK10866        223 RQLQLNAQADKVAKI  237 (243)
T ss_pred             HHcCChHHHHHHHHH
Confidence            999998888776543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.05  E-value=1.3e-08  Score=84.88  Aligned_cols=114  Identities=10%  Similarity=-0.055  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (581)
                      ....+..+|.++...|++++|+..+++++.+.     ++++....++.++|.++...|++++|+..+++++.+       
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-------  101 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-------  101 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence            45677899999999999999999999999873     334455678999999999999999999999999985       


Q ss_pred             CCcchHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016          452 DDQSISFPMLHLGITLY-------HLNRDKEAEKLVLEALYIREIAFGKDSLPV  498 (581)
Q Consensus       452 ~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (581)
                       +|.....+..+|.++.       ..|++++|...+.+++...+...+.+++..
T Consensus       102 -~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        102 -NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             -CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence             3444455666666666       899999999999999999988887777544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=1.4e-08  Score=84.74  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=95.2

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      ......++.+|.++...|++++|+..|++++.+.     ++++....++.++|.++...|++++|+..+++++.+     
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~-----  101 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER-----  101 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence            4456778999999999999999999999999863     234445678999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          280 GTESADLVLPLFSLGSLFI-------KEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                         .|.....+.++|.++.       ..|+++.|...+.+++..+++..+.+++...
T Consensus       102 ---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        102 ---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             ---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence               3333455556666666       8999999999999999998888776665443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.02  E-value=2.2e-08  Score=78.55  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=92.4

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      ++....++.+|..+...|++++|...|+-...+        +|.....+++||.++...|++.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            555667899999999999999999999988775        4667889999999999999999999999999988     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                         .|+.+..+.++|.++...|+.+.|.+.|+.++..+
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence               56678889999999999999999999999999986

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=6.1e-08  Score=78.44  Aligned_cols=123  Identities=22%  Similarity=0.215  Sum_probs=100.3

Q ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016          299 KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (581)
Q Consensus       299 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (581)
                      ..++...+...+++.+..     .++.+....+...+|.++...|++++|...|++++..       .+++.....+...
T Consensus        23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-------~~d~~l~~~a~l~   90 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-------APDPELKPLARLR   90 (145)
T ss_pred             HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CCCHHHHHHHHHH
Confidence            578888887777777664     2445566788889999999999999999999999885       3556666667789


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                      ++.++...|++++|+..++..         ...+........+|.+|...|++++|+..|++++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999998652         2334455678889999999999999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.00  E-value=1.3e-08  Score=79.86  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      ++.....+.+|..+...|++++|...|+-...+        +|.....+++||.++..+|++.+|+..|.+++.+     
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-----   98 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-----   98 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            556778899999999999999999999998887        7888999999999999999999999999999986     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                         +|+....+.++|.++...|+.+.|.+.|+.++....
T Consensus        99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363         99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence               356668889999999999999999999999999863

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=2.1e-06  Score=71.41  Aligned_cols=227  Identities=14%  Similarity=0.091  Sum_probs=164.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                      ++....+..+..-+.+|....+|++|...+.++.+..+..  ....+.+.++-..+.+......+.++..+++++..++.
T Consensus        25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV  102 (308)
T ss_pred             CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3434445566666788888999999999999999877653  22345567788888999999999999999999999987


Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                      +.   ..|+.+..-...+.-....-++++|+.+|++++.+.+..    .........+...++++.+..++++|-..+.+
T Consensus       103 E~---GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~----dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  103 EC---GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED----DRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             Hh---CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc----chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            75   344544444445555567789999999999999998752    23334455667889999999999999988888


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                      -..+....  ...+.....+.....+|.-..+|..|...++...++    .+-..++...++.+|-..| ..|+.++..+
T Consensus       176 e~~~~~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  176 EGVAADKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             hhhHHHHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence            76665554  223444455666667777788999999999886654    2223455666777776554 6778777665


Q ss_pred             HHH
Q 008016          479 LVL  481 (581)
Q Consensus       479 ~~~  481 (581)
                      .+.
T Consensus       249 vl~  251 (308)
T KOG1585|consen  249 VLS  251 (308)
T ss_pred             HHc
Confidence            543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.99  E-value=3.3e-08  Score=79.40  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      +|........+|..+...|++++|...+++++..        .|....++..+|.++...|++++|..++++++..    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----   80 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----   80 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            3445677889999999999999999999998886        4556788999999999999999999999999875    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                          +|.....+..+|.++...|++++|+..++++++.
T Consensus        81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                4556778899999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=1.1e-06  Score=73.61  Aligned_cols=192  Identities=19%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (581)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (581)
                      .+.++-.++....+......  .-.++.-..+-.+..+....|+.+-|..++++..+.+        |....+...-|..
T Consensus        26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~   95 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAML   95 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHH
Confidence            45556666666665554432  1122345556667777888999999999988866652        3334555566888


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      +...|++++|+++|+..++        ++|....++-.--.+...+|+.-+|++.+..-++.+-      .|    ..+|
T Consensus        96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~------~D----~EAW  157 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM------ND----QEAW  157 (289)
T ss_pred             HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc------Cc----HHHH
Confidence            9999999999999998875        3566556666666677788999999999998888743      23    4567


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHH
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDI  444 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~  444 (581)
                      ..++.+|...|++++|.-++++.+-+        .|.....+..+|+++.-+|   +.+-|.++|.+++++
T Consensus       158 ~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  158 HELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999998765        3555566777888777666   577899999999986

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.1e-06  Score=71.34  Aligned_cols=225  Identities=11%  Similarity=0.025  Sum_probs=156.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      ....+..+..-+.+|....++++|...+.++.+..+. ....-..+..+-..+.+......+.++..+++++..++.+. 
T Consensus        27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~-  104 (308)
T KOG1585|consen   27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC-  104 (308)
T ss_pred             chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-
Confidence            4445566667778888899999999999988876643 12223345556667777888899999999999999998775 


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                        ..|+.+..-...+.-....-++++|+.+|++++.+.+..  +........+...+.++....++++|-..+.+-..+.
T Consensus       105 --GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~  180 (308)
T KOG1585|consen  105 --GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA  180 (308)
T ss_pred             --CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence              334444444445555567789999999999999997652  2233445667788999999999999999888877666


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                      .+.  ...+.....+.....+|....+|..|...++...++-      +-..+.-..+..+|-..| ..|+.++....+.
T Consensus       181 ~~~--~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip------~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  181 DKC--DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP------AFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHH--hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc------cccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            554  2233444555566667777789999999999877652      222233344445555444 5577776655543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.95  E-value=2.7e-08  Score=89.74  Aligned_cols=258  Identities=17%  Similarity=0.144  Sum_probs=158.5

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (581)
                      -++..|+|..++.-.+. .      ..+.+........+.+++..+|+++..+.-...          ..+| ...+...
T Consensus        10 n~fy~G~Y~~~i~e~~~-~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~----------~~~~-~l~av~~   71 (290)
T PF04733_consen   10 NQFYLGNYQQCINEASL-K------SFSPENKLERDFYQYRSYIALGQYDSVLSEIKK----------SSSP-ELQAVRL   71 (290)
T ss_dssp             HHHCTT-HHHHCHHHHC-H------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T----------TSSC-CCHHHHH
T ss_pred             HHHHhhhHHHHHHHhhc-c------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc----------CCCh-hHHHHHH
Confidence            35568999988865551 1      123344455667788899999998765543321          1122 1334455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      ++..+...++-+.++.-++..+.      ..............|.++...|++++|++.+.+.             ....
T Consensus        72 la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE  132 (290)
T PF04733_consen   72 LAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------------GSLE  132 (290)
T ss_dssp             HHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------------Cccc
Confidence            56655544444444433322111      1112223345566788888999999998877653             1234


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH--HHHHcC--ChHHHHHHHHHHHHHHHHh
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE--LLHIVG--RGQEGRELLEECLLITEKY  406 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g--~~~~A~~~~~~al~~~~~~  406 (581)
                      .......++...++++.|.+.++.+.++       . ++..+    .+++.  +....|  ++.+|..+|++..+     
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------~-eD~~l----~qLa~awv~l~~g~e~~~~A~y~f~El~~-----  195 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQI-------D-EDSIL----TQLAEAWVNLATGGEKYQDAFYIFEELSD-----  195 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCC-------S-CCHHH----HHHHHHHHHHHHTTTCCCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-------C-CcHHH----HHHHHHHHHHHhCchhHHHHHHHHHHHHh-----
Confidence            4555778899999999999888776543       2 23332    33333  333444  68999999988532     


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD-KEAEKLVLEALY  485 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~  485 (581)
                         ..+.....++.++.++..+|++++|.+.+++++.        .+|....++.+++.+....|+. +.+.+++.+...
T Consensus       196 ---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  196 ---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             ---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             ---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence               2234456788999999999999999999999875        3456677889999999999998 456666666544


Q ss_pred             HHHHHcCCCChhH
Q 008016          486 IREIAFGKDSLPV  498 (581)
Q Consensus       486 ~~~~~~~~~~~~~  498 (581)
                      .     .|+||.+
T Consensus       265 ~-----~p~h~~~  272 (290)
T PF04733_consen  265 S-----NPNHPLV  272 (290)
T ss_dssp             H-----TTTSHHH
T ss_pred             h-----CCCChHH
Confidence            3     3677643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.94  E-value=3.6e-08  Score=79.22  Aligned_cols=102  Identities=16%  Similarity=0.194  Sum_probs=89.3

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +|........+|..+...|++++|...++++....       |....++..+|.++...|++++|..++++++...    
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----   81 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD----   81 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            77778889999999999999999999999877653       4455678899999999999999999999988752    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                          |.....+..+|.++...|++++|+..++++++.
T Consensus        82 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        82 ----PDDPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                334677889999999999999999999999987

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=1.5e-08  Score=86.95  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (581)
                      .......+-..|..+++.++|.+|+..|.+|+++          .|.++..|.+.+-+|.++|.++.|++..+.++.+. 
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-  145 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-  145 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence            3455667899999999999999999999999998          89999999999999999999999999999988774 


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                            |....+|..||.+|..+|++++|+..|++++++
T Consensus       146 ------p~yskay~RLG~A~~~~gk~~~A~~aykKaLel  178 (304)
T KOG0553|consen  146 ------PHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL  178 (304)
T ss_pred             ------hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence                  888899999999999999999999999999996

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=3.2e-08  Score=85.03  Aligned_cols=119  Identities=26%  Similarity=0.242  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      .+..+..-|.-..+.++|.+|+..|.+|+++        .|..+..|.+.+.+|.++|.++.|++-++.++.+       
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-------  144 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-------  144 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------
Confidence            4556677788899999999999999999998        6777899999999999999999999999999987       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (581)
                       +|....+|..||.+|..+|++++|++.|++++++       .|++..+   ..+|..+-...++
T Consensus       145 -Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel-------dP~Ne~~---K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  145 -DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL-------DPDNESY---KSNLKIAEQKLNE  198 (304)
T ss_pred             -ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc-------CCCcHHH---HHHHHHHHHHhcC
Confidence             7889999999999999999999999999999996       5555533   3444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.93  E-value=2e-07  Score=75.48  Aligned_cols=134  Identities=11%  Similarity=0.096  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ...+..+......++...+...+++....       .++.+....+...+|.+++..|++++|...|+.+....    ++
T Consensus        12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----~d   80 (145)
T PF09976_consen   12 SALYEQALQALQAGDPAKAEAAAEQLAKD-------YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----PD   80 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----CC
Confidence            34566666666789999988877777654       44455667788899999999999999999999987743    33


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (581)
                      ......+...++.++...|++++|+..++..         ++.+........+|.+|...|++++|...|++++
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            3444556788999999999999999998652         2334456678889999999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=2e-07  Score=84.10  Aligned_cols=261  Identities=15%  Similarity=0.099  Sum_probs=159.2

Q ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 008016          212 MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (581)
Q Consensus       212 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (581)
                      -++..|+|..++.-++  +.      ..+.+........+.+++..+|+++..+.-..          ...+|. ..+..
T Consensus        10 n~fy~G~Y~~~i~e~~--~~------~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~----------~~~~~~-l~av~   70 (290)
T PF04733_consen   10 NQFYLGNYQQCINEAS--LK------SFSPENKLERDFYQYRSYIALGQYDSVLSEIK----------KSSSPE-LQAVR   70 (290)
T ss_dssp             HHHCTT-HHHHCHHHH--CH------TSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-----------TTSSCC-CHHHH
T ss_pred             HHHHhhhHHHHHHHhh--cc------CCCchhHHHHHHHHHHHHHHcCChhHHHHHhc----------cCCChh-HHHHH
Confidence            3567899888886555  11      23445566777788999999998876543221          112332 34445


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (581)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (581)
                      .++..+...++.+.++.-++..+.      +.............|.++...|++++|++.+.+.            ..  
T Consensus        71 ~la~y~~~~~~~e~~l~~l~~~~~------~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------------~~--  130 (290)
T PF04733_consen   71 LLAEYLSSPSDKESALEELKELLA------DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------------GS--  130 (290)
T ss_dssp             HHHHHHCTSTTHHCHHHHHHHCCC------TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------------TC--
T ss_pred             HHHHHHhCccchHHHHHHHHHHHH------hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------------Cc--
Confidence            566655544444444443332221      1112123344556678888899999998887653            11  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHHHHhc
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--NFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~  449 (581)
                       .........++...++++.|.+.++.+.++     .   .+...+....+++....|  ++.+|...|++..+      
T Consensus       131 -lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------  195 (290)
T PF04733_consen  131 -LELLALAVQILLKMNRPDLAEKELKNMQQI-----D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD------  195 (290)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC------
T ss_pred             -ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh------
Confidence             223345677899999999999988775433     1   222223333344444445  68999999998643      


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~  529 (581)
                        ..+.....+..++.++..+|++++|...+++++.        ..|....++.+++.+....|+....+.+++.+....
T Consensus       196 --~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--------~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  196 --KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--------KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             --CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--------C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             --ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence              2344567788999999999999999999999865        234556789999999999999852555566654442


Q ss_pred             HHHhcCCCCHHH
Q 008016          530 QEREFGSESEEV  541 (581)
Q Consensus       530 ~~~~~~~~~~~~  541 (581)
                           .+.||-.
T Consensus       266 -----~p~h~~~  272 (290)
T PF04733_consen  266 -----NPNHPLV  272 (290)
T ss_dssp             -----TTTSHHH
T ss_pred             -----CCCChHH
Confidence                 3556644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=1.3e-05  Score=77.48  Aligned_cols=226  Identities=13%  Similarity=0.079  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHH------HHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          164 ILDIIALGYVYIGDLKFVQSLLDM------MSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .|..-|..|.+..++++|.++|++      ++++.+-  .-+......-...|.-+...|+++.|+..|-++-.+.+.  
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarf--afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka--  738 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF--AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA--  738 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh--hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH--
Confidence            444556666677777777777764      2222211  111222333344566677788888888888766443221  


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                                    ...-.....|.+|+..++...+.         ......|-.++.-|...|+++.|+++|.++-.  
T Consensus       739 --------------ieaai~akew~kai~ildniqdq---------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--  793 (1636)
T KOG3616|consen  739 --------------IEAAIGAKEWKKAISILDNIQDQ---------KTASGYYGEIADHYANKGDFEIAEELFTEADL--  793 (1636)
T ss_pred             --------------HHHHhhhhhhhhhHhHHHHhhhh---------ccccccchHHHHHhccchhHHHHHHHHHhcch--
Confidence                          12223345566666655443222         11223455677888888999888888876522  


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH-
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL-  396 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-  396 (581)
                                    ...-..+|.+.|++++|.++-+++.         +|  ......|...+.-+-..|++.+|+.+| 
T Consensus       794 --------------~~dai~my~k~~kw~da~kla~e~~---------~~--e~t~~~yiakaedldehgkf~eaeqlyi  848 (1636)
T KOG3616|consen  794 --------------FKDAIDMYGKAGKWEDAFKLAEECH---------GP--EATISLYIAKAEDLDEHGKFAEAEQLYI  848 (1636)
T ss_pred             --------------hHHHHHHHhccccHHHHHHHHHHhc---------Cc--hhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence                          1123345777888888877666542         22  222344555566666666666666655 


Q ss_pred             -----HHHHHHHHHhc---------CCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          397 -----EECLLITEKYK---------GKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       397 -----~~al~~~~~~~---------~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                           .+++.++.+..         +..|++ .......+|.-|...|+...|...|-++-+
T Consensus       849 ti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d  910 (1636)
T KOG3616|consen  849 TIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD  910 (1636)
T ss_pred             EccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence                 23444443321         111222 234566788888889999999888877654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.87  E-value=1.8e-07  Score=78.30  Aligned_cols=113  Identities=17%  Similarity=0.278  Sum_probs=88.2

Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      ...+..+..++.+|..+...|++++|+.+|++++....     +.+....++..+|.++...|++++|+..+++++..  
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  101 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE-----DPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--  101 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            34456677889999999999999999999999998642     23334678999999999999999999999999987  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHHcC
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGK-------AVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~  322 (581)
                            .|.....+..+|.++...|+       ++.|+..++++++.+++...
T Consensus       102 ------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        102 ------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             ------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence                  44456677788888877665       56666666666666555443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.86  E-value=0.00019  Score=73.25  Aligned_cols=412  Identities=12%  Similarity=0.019  Sum_probs=247.5

Q ss_pred             CChhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016          157 KGIEEVAILDIIALGYV-YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (581)
Q Consensus       157 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (581)
                      .+...+.+...+|.++. ...+++.|+.+++++..+.+. ..-......+...++.++.+.+... |...+++.++..+.
T Consensus        54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen   54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET  131 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc
Confidence            34456778889999987 689999999999999888755 2222223445567788898888877 99999999998765


Q ss_pred             HcCCCCHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016          236 RYGKTSILLVTSLLGM-AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (581)
Q Consensus       236 ~~~~~~~~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (581)
                      .   .+.....++..+ ...+...+++..|++.++.........  .+......+....+.+....+..+++.+..+++.
T Consensus       132 ~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~  206 (608)
T PF10345_consen  132 Y---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI  206 (608)
T ss_pred             c---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence            2   222233333333 333333489999999999998876532  2333344455556777788888999999999997


Q ss_pred             HHHHHH--cCCCCchHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHhhccCC------CC----------------
Q 008016          315 KIYTKV--YGENDGRVGMAMCSLAH--AKCANGNAEEAVELYKKALRVIKDSNYMS------LD----------------  368 (581)
Q Consensus       315 ~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~----------------  368 (581)
                      ......  .+..++....++..+-.  ++...|+++.+...+++.-....+.....      ++                
T Consensus       207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~  286 (608)
T PF10345_consen  207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGG  286 (608)
T ss_pred             HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCC
Confidence            776654  11223344445544443  45567888888777766555544331111      00                


Q ss_pred             ----------ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC---CCChH---------------HHHHHHH
Q 008016          369 ----------DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG---KEHPS---------------FVTHLLN  420 (581)
Q Consensus       369 ----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~---------------~~~~~~~  420 (581)
                                .....-++.--|......|..++|.+++++++...++...   ...+.               .......
T Consensus       287 ~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y  366 (608)
T PF10345_consen  287 TPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFY  366 (608)
T ss_pred             ceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHH
Confidence                      0111222333344555667778999999999998877651   11100               1123445


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC---h
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGP-DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS---L  496 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~  496 (581)
                      ++.+..-.|++..|....+.+.....+...+ ........++..|..+...|+.+.|..+|.+..-......++..   .
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            6777788999999999999888765543221 11223456677888888999999999999855433322222222   2


Q ss_pred             hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH--HcCChhhhHHHHHHHHHHH-
Q 008016          497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLD--KLGRKEEKFPLKKRLSNLR-  572 (581)
Q Consensus       497 ~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~l~-  572 (581)
                      -..-+..++..++...+... .....+.+.++.-+.... ........+...+..++.  ..-...++...+.++++.. 
T Consensus       447 l~ila~LNl~~I~~~~~~~~-~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~  525 (608)
T PF10345_consen  447 LYILAALNLAIILQYESSRD-DSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMAN  525 (608)
T ss_pred             HHHHHHHHHHHHhHhhcccc-hhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHH
Confidence            23344555666666655543 211112223221111111 112333333333333332  2233458888888888877 


Q ss_pred             HHHh
Q 008016          573 MKYK  576 (581)
Q Consensus       573 ~~~~  576 (581)
                      .+.+
T Consensus       526 ~~~~  529 (608)
T PF10345_consen  526 NKLG  529 (608)
T ss_pred             Hhhc
Confidence            4443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.85  E-value=1.1e-07  Score=74.55  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      .++.+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+.++++++..     .++++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSP   73 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCC
Confidence            45789999999999999999999998752     344555678889999999999999999999999874     24555


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ....++..+|.++...|++++|..+++++++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            566788999999999999999999999998864

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.85  E-value=0.00013  Score=70.90  Aligned_cols=228  Identities=14%  Similarity=0.039  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSR------ILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      .|..-|.+|.+..++++|.++|++      ++++.+-.++   ..+...-...|.-+...|+++.|+..|-++-...+. 
T Consensus       663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka-  738 (1636)
T KOG3616|consen  663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA-  738 (1636)
T ss_pred             HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH-
Confidence            344556677777778888877764      3444333221   122333334566667778888888777665433221 


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                                       ...-....++.+|+.+++..-..         ......|-.++.-|...|+|+.|.++|.++-
T Consensus       739 -----------------ieaai~akew~kai~ildniqdq---------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~  792 (1636)
T KOG3616|consen  739 -----------------IEAAIGAKEWKKAISILDNIQDQ---------KTASGYYGEIADHYANKGDFEIAEELFTEAD  792 (1636)
T ss_pred             -----------------HHHHhhhhhhhhhHhHHHHhhhh---------ccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence                             11222333455555444432111         1112234455666666677776666665541


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  522 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~  522 (581)
                      .                ...-..+|-+.|+|..|.++-++..       ||  ..+...+..-+.-....|++. +|..+
T Consensus       793 ~----------------~~dai~my~k~~kw~da~kla~e~~-------~~--e~t~~~yiakaedldehgkf~-eaeql  846 (1636)
T KOG3616|consen  793 L----------------FKDAIDMYGKAGKWEDAFKLAEECH-------GP--EATISLYIAKAEDLDEHGKFA-EAEQL  846 (1636)
T ss_pred             h----------------hHHHHHHHhccccHHHHHHHHHHhc-------Cc--hhHHHHHHHhHHhHHhhcchh-hhhhe
Confidence            1                1111234555566665554444331       11  122223333333333444433 33222


Q ss_pred             H------HHHHHHHHHh---------cCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          523 L------KRVLRIQERE---------FGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       523 ~------~~a~~~~~~~---------~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                      |      .++++++.+.         .+..|+ ...++...+|.-|...|+..+|...|-++-...
T Consensus       847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k  912 (1636)
T KOG3616|consen  847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK  912 (1636)
T ss_pred             eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH
Confidence            2      1222222221         112233 334677888999999999999999887765443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.85  E-value=2.8e-07  Score=77.19  Aligned_cols=115  Identities=15%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      .+.....+.++|..+...|++++|+.++++++...     ++.+....++..+|.++...|++++|+..+++++.+    
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----  101 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL----  101 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            44456677999999999999999999999999874     233345678999999999999999999999999985    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHHcCCCCh
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNR-------DKEAEKLVLEALYIREIAFGKDSL  496 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~a~~~~~~~~~~~~~  496 (581)
                          .|.....+..+|.++...|+       +++|...++++++..+.....++.
T Consensus       102 ----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        102 ----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             ----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence                45556677788888877654       667777777777776666544443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.82  E-value=2.1e-07  Score=72.95  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      .+++.+|..+...|++++|+..+.+++...     ++++....++..+|.++...|++++|..++++++...     +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence            467889999999999999999999998762     3445556788999999999999999999999998752     444


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +....++..+|.++...|++++|..+++++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            555678899999999999999999999999987

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=4e-06  Score=77.34  Aligned_cols=153  Identities=16%  Similarity=0.088  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (581)
                      +....+.+..+..++..|++++|+..+..++...       |.....+...+.++...|+..+|.+.+++++...     
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-------P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-----  370 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-------PDNPYYLELAGDILLEANKAKEAIERLKKALALD-----  370 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Confidence            4556677888889999999999999998865543       4555566778999999999999999999998852     


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                         |.......++|.+|.+.|++.+|+..+...+..        .|+.+..|..|+..|..+|+..+|...         
T Consensus       371 ---P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A---------  430 (484)
T COG4783         371 ---PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLA---------  430 (484)
T ss_pred             ---CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHH---------
Confidence               333567788999999999999999988887654        677788899999999999988776543         


Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                                      .+..|...|++++|+..+..+.+..
T Consensus       431 ----------------~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         431 ----------------RAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             ----------------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence                            3445677899999999998888763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.77  E-value=6.8e-07  Score=82.23  Aligned_cols=125  Identities=18%  Similarity=0.156  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (581)
                      ...++..+..+...|++++|+..++..+..        .|+....+...+.++...++..+|.+.+++++..        
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------  369 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------  369 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence            445677888999999999999999986543        4555566778899999999999999999999984        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  522 (581)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~  522 (581)
                      .|.......++|.+|.+.|++.+|+..+...+.        +.|+....|..|+..|..+|+.. +|...
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~-~a~~A  430 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA-EALLA  430 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH-HHHHH
Confidence            455556778999999999999999999988765        34555588999999999999877 44433

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.70  E-value=0.00023  Score=71.10  Aligned_cols=339  Identities=13%  Similarity=0.034  Sum_probs=192.6

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      +.....+..-+..+...|..++|+.+.-.|         .+....+..+...+.-....++..--.    ..++....  
T Consensus       344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA---------~d~~~aa~lle~~~~~L~~~~~lsll~----~~~~~lP~--  408 (894)
T COG2909         344 ARLKELHRAAAEWFAEHGLPSEAIDHALAA---------GDPEMAADLLEQLEWQLFNGSELSLLL----AWLKALPA--  408 (894)
T ss_pred             CchhHHHHHHHHHHHhCCChHHHHHHHHhC---------CCHHHHHHHHHhhhhhhhcccchHHHH----HHHHhCCH--
Confidence            334445555566666777777777655443         122223333444444444444433222    11111100  


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY-GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                       +--...+......++......++.+|..+..++........ +......+......|.+....|++++|+++.+.++..
T Consensus       409 -~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~  487 (894)
T COG2909         409 -ELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ  487 (894)
T ss_pred             -HHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence             00011123334457778889999999999888766543210 0011123444455677888999999999999999987


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                      ...     .....-..++..+|.+..-.|++++|..+..++.+..++.  ........+....+.++..+|+...|  .-
T Consensus       488 L~~-----~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq~~~a--~~  558 (894)
T COG2909         488 LPE-----AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQVARA--EQ  558 (894)
T ss_pred             ccc-----ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhHHHHH--HH
Confidence            543     2233334566889999999999999999999999987765  23333445666678889999933222  22


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHH
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK  518 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~  518 (581)
                      .++.........+..+.........+.++...-+++.+..-....++..... .+..-...-.+..|+.++...|+.+ +
T Consensus       559 ~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~-~  636 (894)
T COG2909         559 EKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLD-K  636 (894)
T ss_pred             HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHH-H
Confidence            2222222222112222211122222333333233666666666666654322 1222222233458999999999999 9


Q ss_pred             HHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHcCChhhhHHHHHH
Q 008016          519 LLELLKRVLRIQEREFGSESEEVM-LTLKKVVSYLDKLGRKEEKFPLKKR  567 (581)
Q Consensus       519 A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~  567 (581)
                      |...+.+.......--  .+.+.. .+..........+|+..+|.....+
T Consensus       637 A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         637 ALAQLDELERLLLNGQ--YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            9988888776654321  233332 2333333455668888888877666

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.69  E-value=2.5e-07  Score=86.90  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+...|..++..|++++|+..|+++++.          .|....++..+|.++...|++++|+..+++++.+.       
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------   66 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------   66 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence            3677899999999999999999999987          77788899999999999999999999999998875       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      |....+++.+|.++...|++++|+..|++++.+
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            455667899999999999999999999999986

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.69  E-value=7.2e-07  Score=67.86  Aligned_cols=102  Identities=26%  Similarity=0.330  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      .+.+.+|.++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...     +++
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~   71 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD   71 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence            35788999999999999999999999885     44566677899999999999999999999999987642     333


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                      +........++.++...|++++|+..+-.++.
T Consensus        72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   72 ELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33555566788899999999999998877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.69  E-value=1.8e-07  Score=67.39  Aligned_cols=84  Identities=20%  Similarity=0.187  Sum_probs=65.3

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHM  209 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l  209 (581)
                      ..|++++|+.+++++++..       +.++ ....+..+|.+++..|++++|+.++++ ....       +........+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~-------~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~   64 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELD-------PTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLL   64 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHH-------CGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHC-------CCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHH
Confidence            3689999999999999872       1123 566777899999999999999999988 3332       3334556677


Q ss_pred             HHHHHhccCHHHHHHHHHHH
Q 008016          210 GSMYSTLENYEKSMLVYQRV  229 (581)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~a  229 (581)
                      |.++...|++++|+..++++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.68  E-value=9.8e-07  Score=67.14  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      +++.+|+++-..|+.++|+.+|++++..     +.+.+....++..+|..+...|++++|+..+++++...     ++.+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~~   72 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDDE   72 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcc
Confidence            5788999999999999999999999884     44556677899999999999999999999999988652     2333


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (581)
                      ........++.++...|+.++|+..+-.++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3556667788999999999999998877764

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.66  E-value=7.2e-07  Score=83.83  Aligned_cols=95  Identities=17%  Similarity=0.080  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      +...|..++..|++++|+.+|++++..        .|....++.++|.++...|++++|+..+++++.+        .|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~   68 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS   68 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence            445688888999999999999999987        5566788999999999999999999999999987        456


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ...++..+|.++...|++++|+..|++++.+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l   99 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL   99 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            6778999999999999999999999999987

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.64  E-value=3.1e-05  Score=80.28  Aligned_cols=250  Identities=16%  Similarity=0.131  Sum_probs=181.7

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +|.....|...-......++.++|.+..++|+....-.-+......+.++.||-..|   |.-+.-.+.|++|.+.+.. 
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd~- 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCDA- 1529 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcch-
Confidence            566667777777778899999999999999997641110111223555566655544   5667778889998887432 


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                                ..++..|..+|...+++++|.++++..++.+.        ....+|...|..+..+.+-++|..++++|+
T Consensus      1530 ----------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1530 ----------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             ----------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                      34667899999999999999999999888753        345688889999999999999999999999


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  522 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~  522 (581)
                      ....+      ..........|.+-++.|+.+.+..+|+..+..        +|...+.|......-.+.|+.. .+..+
T Consensus      1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~-~vR~l 1656 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIK-YVRDL 1656 (1710)
T ss_pred             hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHH-HHHHH
Confidence            85422      234456677899999999999999999988763        4556677888888888999988 89999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCChhhhHHHHHHHHHHHHHH
Q 008016          523 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDK-LGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       523 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      |++++.+-      -.+..+.-++..=.-|.+ .|+-+.....-.+|.+.-+..
T Consensus      1657 feRvi~l~------l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1657 FERVIELK------LSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEYVESI 1704 (1710)
T ss_pred             HHHHHhcC------CChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence            99998742      234444444443334443 466666555556666555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.63  E-value=2.9e-07  Score=66.33  Aligned_cols=83  Identities=17%  Similarity=0.283  Sum_probs=66.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (581)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (581)
                      +|+++.|+.++++++.....     .+ ....+..+|.+|...|++++|+.++++ ...        .+........+|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--------~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--------DPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--------HHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--------CCCCHHHHHHHHH
Confidence            68999999999999987421     23 455777799999999999999999998 443        3344667778899


Q ss_pred             HHHHcCCHHHHHHHHHHH
Q 008016          296 LFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       296 ~~~~~g~~~~A~~~~~~a  313 (581)
                      ++..+|++++|++.++++
T Consensus        67 ~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   67 CLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHTT-HHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHhcC
Confidence            999999999999999875

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.62  E-value=3.8e-05  Score=79.65  Aligned_cols=211  Identities=15%  Similarity=0.065  Sum_probs=162.3

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      +|.....|...-......++.++|.+..++||....-.   ...+....|..+-++...-|.-+.-.+.|++|.+.+   
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--- 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---
Confidence            34445667777777888999999999999999874211   122233444444444444566677778888888764   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                            +....+..|..+|...+++++|.++++.+++.+.+.          ..+|..++..+.++++-+.|..++.+|+
T Consensus      1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~----------~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT----------RKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch----------hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                  234677889999999999999999999999986532          4567889999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ....+      ..........|.+-++.|+.+.+..+|+..+..        +|.....|......-...|+.+.+..+|
T Consensus      1592 ~~lPk------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1592 KSLPK------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred             hhcch------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHH
Confidence            87633      223455667788999999999999999998873        5666677888888888999999999999


Q ss_pred             HHHHHHH
Q 008016          481 LEALYIR  487 (581)
Q Consensus       481 ~~a~~~~  487 (581)
                      ++++.+.
T Consensus      1658 eRvi~l~ 1664 (1710)
T KOG1070|consen 1658 ERVIELK 1664 (1710)
T ss_pred             HHHHhcC
Confidence            9998753

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.9e-06  Score=77.79  Aligned_cols=138  Identities=20%  Similarity=0.244  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      ...-|..|++.|+|..|...|++++.........+..       ....++.+++.++.++++|.+|+....++|.+    
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----  286 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----  286 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc----
Confidence            4567899999999999999999999887644332222       34567899999999999999999999999988    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKKALR  357 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~  357 (581)
                          .|....+++.-|.++...|+++.|+..|++++++        .|..-.+...+..+-.+..++.+ ..+.|..++.
T Consensus       287 ----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 ----DPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             ----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                6677899999999999999999999999999987        34444555556655555444433 4667777666


Q ss_pred             HH
Q 008016          358 VI  359 (581)
Q Consensus       358 ~~  359 (581)
                      ..
T Consensus       355 k~  356 (397)
T KOG0543|consen  355 KL  356 (397)
T ss_pred             cc
Confidence            53

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.59  E-value=2e-06  Score=76.12  Aligned_cols=102  Identities=9%  Similarity=0.016  Sum_probs=87.4

Q ss_pred             HHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016          376 RIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       376 ~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      .+..|..+ ...|++++|+..|+..+..+     ++++....+++.+|.+|...|++++|+..|++++..     .++++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s~  214 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-----YPKSP  214 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCc
Confidence            35555554 56799999999999998875     455666778999999999999999999999999884     36778


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ....++..+|.++...|++++|...|+++++.+
T Consensus       215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            889999999999999999999999999998865

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.58  E-value=3.6e-05  Score=65.62  Aligned_cols=171  Identities=16%  Similarity=0.162  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..|...|...++.|++++|+..|+.+...       -+..|-...+...++.++++.++++.|+...++.+...    +.
T Consensus        35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----P~  103 (254)
T COG4105          35 SELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----PT  103 (254)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----CC
Confidence            45899999999999999999999988754       45567778899999999999999999999999988886    77


Q ss_pred             cchHHHHHHHHHHHHHhc-----cCHH---HHHHHHHHHHHHHHHHcCCCCH--------------HHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTL-----ENYE---KSMLVYQRVINVLESRYGKTSI--------------LLVTSLLGMAKVLG  256 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~-----g~~~---~A~~~~~~al~~~~~~~~~~~~--------------~~~~~~~~la~~~~  256 (581)
                      +|+...+++..|.+++..     .+..   +|..-+++.+...     |+++              ..+.--..+|..|.
T Consensus       104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~  178 (254)
T COG4105         104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL  178 (254)
T ss_pred             CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888887643     3333   3444444444332     2222              12233446789999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 008016          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF  310 (581)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  310 (581)
                      +.|.+-.|+..++++++...     +.+....++..+...|..+|-.++|...-
T Consensus       179 kr~~~~AA~nR~~~v~e~y~-----~t~~~~eaL~~l~eaY~~lgl~~~a~~~~  227 (254)
T COG4105         179 KRGAYVAAINRFEEVLENYP-----DTSAVREALARLEEAYYALGLTDEAKKTA  227 (254)
T ss_pred             HhcChHHHHHHHHHHHhccc-----cccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence            99999999999999988753     35566778889999999999999987643

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.58  E-value=4.9e-07  Score=62.42  Aligned_cols=64  Identities=19%  Similarity=0.378  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKI  316 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  316 (581)
                      +..+..+|.++...|++++|+..|+++++.        +|....++.++|.++..+| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567899999999999999999999999998        6778899999999999999 799999999999986

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.57  E-value=5.4e-07  Score=62.19  Aligned_cols=64  Identities=27%  Similarity=0.451  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRV  358 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  358 (581)
                      +.++..+|.++...|++++|+..|.++++.        +|....++.++|.++...| ++++|+..+++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567899999999999999999999999997        5677889999999999999 799999999999986

...

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.57  E-value=0.0014  Score=67.01  Aligned_cols=434  Identities=12%  Similarity=0.065  Sum_probs=254.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (581)
                      .+..+.+.+... |....++.++..+..     .......++..+ .......+++..|.+.++......... .+....
T Consensus       106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~-----~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d~~~~  178 (608)
T PF10345_consen  106 LARIYFKTNPKA-ALKNLDKAIEDSETY-----GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GDPAVF  178 (608)
T ss_pred             HHHHHHhcCHHH-HHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CCHHHH
Confidence            366666666666 999999988875441     122223333333 333333489999999999988876532 222233


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR--YGKTSILLVTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      ..+....+.+....+..+++++..+++.......  .+...+....++..+-.  ++...|+++.+...+++.-+.....
T Consensus       179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~  258 (608)
T PF10345_consen  179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEI  258 (608)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3334455667778888999999999997776643  11123333444444443  4456788777777766554443332


Q ss_pred             cCCC-------C-----------------h----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC--
Q 008016          279 RGTE-------S-----------------A----------DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG--  322 (581)
Q Consensus       279 ~~~~-------~-----------------~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--  322 (581)
                      ....       +                 +          -.+-++..-|......|..++|.++++++++..++...  
T Consensus       259 ~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~  338 (608)
T PF10345_consen  259 KKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKS  338 (608)
T ss_pred             hcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccC
Confidence            1110       0                 0          01223344456667778888999999999999888751  


Q ss_pred             -CCCch---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc
Q 008016          323 -ENDGR---------------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV  386 (581)
Q Consensus       323 -~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  386 (581)
                       ...+.               .......++.+..-.|++..|....+.+.....+... .........+++..|..+...
T Consensus       339 ~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~yL~gl~~q~~  417 (608)
T PF10345_consen  339 PSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPS-KLYESLYPLLHYLLGLYYQST  417 (608)
T ss_pred             CCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCcc-chhhhhhHHHHHHHHHHHHHc
Confidence             11110               1223445677778899999999999998887664300 011333455667788899999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHHH
Q 008016          387 GRGQEGRELLEECLLITEKYKG---KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG-PDDQSISFPMLH  462 (581)
Q Consensus       387 g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~  462 (581)
                      |+.+.|+..|.+..........   ....-...+..++..++...+.......-+.+.++..+.... ..+.....++..
T Consensus       418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~  497 (608)
T PF10345_consen  418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL  497 (608)
T ss_pred             CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence            9999999999854433222211   222333445566777777666544422222333332222111 111222222222


Q ss_pred             HHHHHH--HcCChHHHHHHHHHHHHHH-HHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH
Q 008016          463 LGITLY--HLNRDKEAEKLVLEALYIR-EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE  539 (581)
Q Consensus       463 la~~~~--~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~  539 (581)
                      +..++.  ..-...++...+.++++.. ...  .++.-...++..++..+. .|+.. +......++.....+.  ++..
T Consensus       498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~--~n~~l~~~~L~lm~~~lf-~~~~~-e~~~~s~~a~~~A~k~--~d~~  571 (608)
T PF10345_consen  498 VLATYNTFEPFSSNEAKRHLQEALKMANNKL--GNSQLLAILLNLMGHRLF-EGDVG-EQAKKSARAFQLAKKS--SDYS  571 (608)
T ss_pred             HHHHHhhCCccccHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHH-cCCHH-HHHHHHHHHHHHHHhh--hhhh
Confidence            222222  2233458999999999988 433  233344456677777776 77777 7666667777776654  1222


Q ss_pred             HHHH---HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          540 EVML---TLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       540 ~~~~---~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      +...   +-..+...|...|+.++|.....+.-..
T Consensus       572 ~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~  606 (608)
T PF10345_consen  572 DQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV  606 (608)
T ss_pred             hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence            2222   2235667789999999999988876543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=9.2e-05  Score=62.93  Aligned_cols=246  Identities=17%  Similarity=0.126  Sum_probs=153.5

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (581)
                      -++..|+|..++..-++....        +........+.+.|...|++..-+.-....         ...+  ..+...
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~--------~~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~~~~--lqAvr~   77 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS--------KTDVELDVYMYRAYLALGQYQIVISEIKEG---------KATP--LQAVRL   77 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc--------cchhHHHHHHHHHHHHcccccccccccccc---------cCCh--HHHHHH
Confidence            345578888877766553211        133334566778888888876544332211         1111  233444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      ++.....-++.++-+.-..+-+..      ............-|.+|...|++++|++.......             ..
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-------------lE  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-------------LE  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-------------HH
Confidence            555555555554444333332221      11222334455568899999999999988876332             23


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHh
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  406 (581)
                      +...-..++.+..+.+-|...++++.++.++        .    ++..||..+..    .+++.+|.-+|++.-+     
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------~----tLtQLA~awv~la~ggek~qdAfyifeE~s~-----  201 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDED--------A----TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----  201 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchH--------H----HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence            3333456777888899999999888876332        1    23456666654    3456777777766432     


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (581)
                         ..+.+...++..+.+...+|++++|...++.++.        ..+....++.++..+-...|...++..-+-.
T Consensus       202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--------kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--------KDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence               1344556788999999999999999999999998        3455567788888888889988776654443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=3.5e-05  Score=63.85  Aligned_cols=197  Identities=14%  Similarity=0.135  Sum_probs=121.9

Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (581)
                      +...+++++|.++|.++-.+.+                      ...++..|=..|.++-+...+.  .+..+.+.++..
T Consensus        24 fgg~~k~eeAadl~~~Aan~yk----------------------laK~w~~AG~aflkaA~~h~k~--~skhDaat~Yve   79 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAANMYK----------------------LAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVE   79 (288)
T ss_pred             cCCCcchHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence            3445688899888888765443                      3334444444455554444332  122334555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (581)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (581)
                      .+.+|.+ ++..+|..+++++++++...  +.-...+.-...+|.+|... .++++|+.+|+++-+.+...    .....
T Consensus        80 A~~cykk-~~~~eAv~cL~~aieIyt~~--Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e----es~ss  152 (288)
T KOG1586|consen   80 AANCYKK-VDPEEAVNCLEKAIEIYTDM--GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE----ESVSS  152 (288)
T ss_pred             HHHHhhc-cChHHHHHHHHHHHHHHHhh--hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch----hhhhh
Confidence            5666544 48888888888888887655  22223344566788888765 89999999999999987641    22333


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH--PSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      ...++...+..-...++|.+|+..|++.....-.   ..-  ...-..+..-|.++....+.-.+...+++-.+
T Consensus       153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence            4455666777778889999999999987654311   110  01112344456666666676665555555444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.55  E-value=4.5e-06  Score=73.94  Aligned_cols=104  Identities=19%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          246 TSLLGMAKVL-GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       246 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ...+..+..+ ...|+|++|+..|+..++.+     ++++....+++.+|.+|...|++++|...|+++++.+     ++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~  212 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK  212 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence            3445555554 56799999999999999874     4455667899999999999999999999999999864     66


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                      ++....++..+|.++...|++++|...|+++++.+
T Consensus       213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            78899999999999999999999999999998863

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.55  E-value=5.5e-05  Score=64.55  Aligned_cols=174  Identities=16%  Similarity=0.104  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (581)
                      .+..+++-|....+.|++++|...|+.....       .|..+....+...++.++.+.+++++|+...++-+...    
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-------~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----  101 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-------HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----  101 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----
Confidence            3456777888889999999999999987753       45556667778899999999999999999999988875    


Q ss_pred             CCCChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHHH
Q 008016          408 GKEHPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFP--------------MLHLGITLY  468 (581)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~~la~~~~  468 (581)
                       +.||+...+++..|..+...     .+...+...+...-+...+.  |+++....+              -..+|..|.
T Consensus       102 -P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~  178 (254)
T COG4105         102 -PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYL  178 (254)
T ss_pred             -CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             66788777888777776543     23333444343333333332  333322221              234688999


Q ss_pred             HcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH
Q 008016          469 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  521 (581)
Q Consensus       469 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~  521 (581)
                      +.|.+-.|+.-++++++-.     ++.+....++..+..+|..+|-.+ +|..
T Consensus       179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~-~a~~  225 (254)
T COG4105         179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTD-EAKK  225 (254)
T ss_pred             HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChH-HHHH
Confidence            9999999999999998866     556677789999999999999888 6644

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.1e-06  Score=77.48  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=102.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (581)
                      -.-|..|++.|+|..|...|++++.......+.+..       ....++.|++.++.++++|.+|+....+++++     
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----  286 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-----  286 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence            456789999999999999999999887543222211       12357889999999999999999999999985     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                         .|....+++.-|.++...|+++.|+..|++++++.     |++   ..+...|..+..+...+.....++|.+++.
T Consensus       287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N---ka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN---KAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               56778899999999999999999999999999865     444   344555555554444333233445555443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=0.00029  Score=65.19  Aligned_cols=408  Identities=16%  Similarity=0.119  Sum_probs=230.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh-----c
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS-----L  195 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~  195 (581)
                      .+..+..++....+..|++.....+.......     ....+..-...-..+......++|+.++.-+..+...     .
T Consensus       103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le-----~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~  177 (696)
T KOG2471|consen  103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLE-----SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLV  177 (696)
T ss_pred             hhhhheeeeeHhhcchHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            45556666777778888887776665544332     2222222333344455566677777766554433211     0


Q ss_pred             CCC----------cchHHH-----------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016          196 KDD----------EPLLDA-----------ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (581)
Q Consensus       196 ~~~----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (581)
                      +..          .|..+.           +....-..+....+...+..-...++.+.     .+   ...++...+..
T Consensus       178 gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-----~~---s~~~l~LKsq~  249 (696)
T KOG2471|consen  178 GNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-----QD---SSMALLLKSQL  249 (696)
T ss_pred             ccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-----CC---CcHHHHHHHHH
Confidence            100          111110           00111112222223222222222222221     12   24456667888


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCC------
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILK-IYTKVYGEND------  325 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~------  325 (581)
                      ++..|++.+|.+.+...- +.+...+.-.|.  ....++++|.+++..|.|.-+..+|.+|+. .+.+...+-.      
T Consensus       250 eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t  328 (696)
T KOG2471|consen  250 EYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT  328 (696)
T ss_pred             HHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence            999999999998876432 222111111232  334568999999999999999999999996 4433321101      


Q ss_pred             ---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC--------------
Q 008016          326 ---GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR--------------  388 (581)
Q Consensus       326 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------  388 (581)
                         ......+++.|..|...|++-.|.++|.++...+...          ...|..+|.++....+              
T Consensus       329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n----------PrlWLRlAEcCima~~~~l~ee~~~s~s~~  398 (696)
T KOG2471|consen  329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN----------PRLWLRLAECCIMALQKGLLEEGNSSLSRS  398 (696)
T ss_pred             hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHHhhhhhhhhccCCcccc
Confidence               1245678899999999999999999999999987542          2345666666543110              


Q ss_pred             -----------------------------------hHHHHHHHHHHHHHHHHh---------------------------
Q 008016          389 -----------------------------------GQEGRELLEECLLITEKY---------------------------  406 (581)
Q Consensus       389 -----------------------------------~~~A~~~~~~al~~~~~~---------------------------  406 (581)
                                                         .+-|.-+++.++-+..+.                           
T Consensus       399 ~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~  478 (696)
T KOG2471|consen  399 EIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNT  478 (696)
T ss_pred             cceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCC
Confidence                                               223444455544333100                           


Q ss_pred             -------cC-------CCChH--------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          407 -------KG-------KEHPS--------FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       407 -------~~-------~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                             .|       +..|.        ...++.+.+.+-...|+.-.|+..-.+.++.         ++...++.-||
T Consensus       479 t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------~~lS~~~kfLG  549 (696)
T KOG2471|consen  479 TTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL---------ADLSKIYKFLG  549 (696)
T ss_pred             CcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh---------hhhhhHHHHHH
Confidence                   00       01111        1234555667778899999999988888774         34445555566


Q ss_pred             HHHH-----HcCChHHHHHHHHHHH------H--HHHHHcCC-------------C-------Chh--HHHHHHHHHHHH
Q 008016          465 ITLY-----HLNRDKEAEKLVLEAL------Y--IREIAFGK-------------D-------SLP--VGEALDCLVSIQ  509 (581)
Q Consensus       465 ~~~~-----~~g~~~~A~~~~~~a~------~--~~~~~~~~-------------~-------~~~--~~~~~~~la~~~  509 (581)
                      .+|.     ...+..+|...+.--+      .  ..+.-++.             .       .++  ....+.+||.++
T Consensus       550 HiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~  629 (696)
T KOG2471|consen  550 HIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL  629 (696)
T ss_pred             HHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence            5554     5677777776654310      0  00000000             1       111  123478899999


Q ss_pred             HHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          510 TRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       510 ~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      .-+|+++ +|..++..+..+.....    +  ..+...-..+-...|+...|...+++.
T Consensus       630 alq~~~d-qAk~ll~~aatl~hs~v----~--~~A~~lavyidL~~G~~q~al~~lk~~  681 (696)
T KOG2471|consen  630 ALQGHHD-QAKSLLTHAATLLHSLV----N--VQATVLAVYIDLMLGRSQDALARLKQC  681 (696)
T ss_pred             HHhcccH-HHHHHHHHHHHhhhccc----c--HHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence            9999999 99999998887654221    1  122222233446789999998887764

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.50  E-value=3.8e-05  Score=65.16  Aligned_cols=242  Identities=15%  Similarity=0.129  Sum_probs=165.5

Q ss_pred             CChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 008016          176 GDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL  255 (581)
Q Consensus       176 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  255 (581)
                      .+.++|+.-|++++++-   ++....-..++-.+..+++..|+|++-...|.+.+...+.....+...  .+.+.+-..-
T Consensus        41 ~~p~~Al~sF~kVlelE---gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyi  115 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELE---GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYI  115 (440)
T ss_pred             cCHHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHH
Confidence            47888999999988775   333344456778888999999999999999999998877654444332  1122222222


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc----hHHHH
Q 008016          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMA  331 (581)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~  331 (581)
                      ....+.+--..+|+..++..+..  .+......+-..||.+|...|+|.+-.+.+.+.-..++..-|.++.    .....
T Consensus       116 StS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEi  193 (440)
T KOG1464|consen  116 STSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEI  193 (440)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhh
Confidence            23444555556677666665543  2333344556679999999999999888888877776655444432    35566


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  411 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  411 (581)
                      |..-..+|..+.+-.+-..+|++++.+-..    -|.+..+..+...=|..+.+.|++++|..-|=+|..-+.+. |...
T Consensus       194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSA----IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs-GspR  268 (440)
T KOG1464|consen  194 YALEIQMYTEQKNNKKLKALYEQALHIKSA----IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES-GSPR  268 (440)
T ss_pred             HhhHhhhhhhhcccHHHHHHHHHHHHhhcc----CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-CCcc
Confidence            666677888888888888999999987543    35555555555556777888999999998888887776554 2223


Q ss_pred             hHHHHHHHHHHHHHHHcc
Q 008016          412 PSFVTHLLNLAASYSRSK  429 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g  429 (581)
                      .....-|..||..+.+.|
T Consensus       269 RttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  269 RTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             hhHHHHHHHHHHHHHHcC
Confidence            334445667788777765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.50  E-value=6.5e-07  Score=60.85  Aligned_cols=60  Identities=25%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .+|..+...|++++|+..|+++++        .+|....++..+|.++..+|++++|+.+|+++++..
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            578899999999999999999987        468889999999999999999999999999998764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.49  E-value=1.3e-06  Score=65.35  Aligned_cols=96  Identities=26%  Similarity=0.390  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      ++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|...+++++...        +
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            4678899999999999999999999886        23334778899999999999999999999998752        2


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....++..+|.++...|++++|..++.+++..
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33367889999999999999999999988764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.49  E-value=2.3e-05  Score=58.36  Aligned_cols=101  Identities=15%  Similarity=0.131  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..+-..+..+...|+.+.|++.|.+++.+          -|..+.+|++.+..+..+|+.++|..-+++++++.   ++.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~  110 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQ  110 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---Ccc
Confidence            44677888899999999999999999988          78889999999999999999999999999999887   455


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      ......++...|.+|...|+-+.|..-|+.+-++
T Consensus       111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            5556677888999999999999999999998776

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=3.6e-05  Score=63.03  Aligned_cols=204  Identities=16%  Similarity=0.085  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      ...+..++..|..|-..|-+.-|..-|.+++.+        .|..+.+++.||..+...|+++.|.+.|...+++     
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----  128 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----  128 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence            455777888899999999999999999999998        6778899999999999999999999999999876     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE-CL  400 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al  400 (581)
                         +|..-.+..|.|..+..-|++.-|.+-+.+-.+.       .|.+|... .|..   +-...-++.+|..-+.+ +.
T Consensus       129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-------D~~DPfR~-LWLY---l~E~k~dP~~A~tnL~qR~~  194 (297)
T COG4785         129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-------DPNDPFRS-LWLY---LNEQKLDPKQAKTNLKQRAE  194 (297)
T ss_pred             ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-------CCCChHHH-HHHH---HHHhhCCHHHHHHHHHHHHH
Confidence               5666677888899999999999998877765443       34444432 2211   12233456677654433 22


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ...+.     ...+..+-..|       |+..+ ..+++++.+-.+.. ..-......+++.||..+...|+.++|..+|
T Consensus       195 ~~d~e-----~WG~~iV~~yL-------gkiS~-e~l~~~~~a~a~~n-~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         195 KSDKE-----QWGWNIVEFYL-------GKISE-ETLMERLKADATDN-TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             hccHh-----hhhHHHHHHHH-------hhccH-HHHHHHHHhhccch-HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            22111     11111122222       22221 12233333311100 0001123457888999999999999999999


Q ss_pred             HHHHHH
Q 008016          481 LEALYI  486 (581)
Q Consensus       481 ~~a~~~  486 (581)
                      +-++.-
T Consensus       261 KLaian  266 (297)
T COG4785         261 KLAVAN  266 (297)
T ss_pred             HHHHHH
Confidence            988763

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=5.9e-05  Score=62.61  Aligned_cols=200  Identities=13%  Similarity=0.052  Sum_probs=124.0

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (581)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (581)
                      -.+++++|.++|.++-.+++                        ...+++.|-..|.++-+...+.  .+..+.+..|..
T Consensus        26 g~~k~eeAadl~~~Aan~yk------------------------laK~w~~AG~aflkaA~~h~k~--~skhDaat~Yve   79 (288)
T KOG1586|consen   26 GSNKYEEAAELYERAANMYK------------------------LAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVE   79 (288)
T ss_pred             CCcchHHHHHHHHHHHHHHH------------------------HHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence            34577888888777665543                        3334444444555554444333  233344556666


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALYIREIAFGKDSLPVG  499 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  499 (581)
                      .+.+|.+ ++.++|...++++++++....  .-...+..+..+|.+|..- .++++|+.+|+++-+.+...  ......-
T Consensus        80 A~~cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssAN  154 (288)
T KOG1586|consen   80 AANCYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSAN  154 (288)
T ss_pred             HHHHhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHH
Confidence            6666655 489999999999999887652  1122334456788888875 89999999999998877532  1112223


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          500 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE----VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       500 ~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      .++...+..-...+++. +|+..|++.....-     +++.    .-..+..-|.++...++.-.+...+++-.++.|.+
T Consensus       155 KC~lKvA~yaa~leqY~-~Ai~iyeqva~~s~-----~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  155 KCLLKVAQYAAQLEQYS-KAIDIYEQVARSSL-----DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-----cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            45666777777888888 88888888764321     1121    11234455666666677766666666666665554


Q ss_pred             hh
Q 008016          576 KQ  577 (581)
Q Consensus       576 ~~  577 (581)
                      ..
T Consensus       229 ~d  230 (288)
T KOG1586|consen  229 TD  230 (288)
T ss_pred             cc
Confidence            43

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.00024  Score=60.45  Aligned_cols=241  Identities=17%  Similarity=0.166  Sum_probs=148.2

Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (581)
                      ++..|+|..++..-++.-.       .  +........+.+.|..+|.+..-+.-...         + ..+ ...+...
T Consensus        18 ~fY~Gnyq~~ine~~~~~~-------~--~~~~e~d~y~~raylAlg~~~~~~~eI~~---------~-~~~-~lqAvr~   77 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSS-------S--KTDVELDVYMYRAYLALGQYQIVISEIKE---------G-KAT-PLQAVRL   77 (299)
T ss_pred             HHHhhHHHHHHHHHHhhcc-------c--cchhHHHHHHHHHHHHccccccccccccc---------c-cCC-hHHHHHH
Confidence            4557777776665544322       1  12344556677888888877544332211         1 111 2233444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (581)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (581)
                      ++.....-++.++-+.-..+-+..      ............-|.+|...|++++|.+.......+ +            
T Consensus        78 ~a~~~~~e~~~~~~~~~l~E~~a~------~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E------------  138 (299)
T KOG3081|consen   78 LAEYLELESNKKSILASLYELVAD------STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-E------------  138 (299)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHh------hccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-H------------
Confidence            555554445544443333332221      222223344455678899999999999988773322 1            


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHh
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  448 (581)
                        +...-..++.+..+.+-|+..++++.++.+..          ++..||..+.+    .+++.+|.-+|++.-+     
T Consensus       139 --~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----------tLtQLA~awv~la~ggek~qdAfyifeE~s~-----  201 (299)
T KOG3081|consen  139 --AAALNVQILLKMHRFDLAEKELKKMQQIDEDA----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-----  201 (299)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-----
Confidence              11223357778889999999998887764332          44445554443    3457777777776543     


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  521 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~  521 (581)
                         ..+.+...+..++.++..+|++++|...++.++...        +...+++.++..+-...|... ++.+
T Consensus       202 ---k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--------~~dpetL~Nliv~a~~~Gkd~-~~~~  262 (299)
T KOG3081|consen  202 ---KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--------AKDPETLANLIVLALHLGKDA-EVTE  262 (299)
T ss_pred             ---ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhCCCh-HHHH
Confidence               234455688899999999999999999999998733        344578889988888999987 5443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.46  E-value=2.9e-05  Score=57.83  Aligned_cols=100  Identities=19%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      .+-.-|......|+.+.|++.|.+++.+.        |..+.+|++.+..+.-+|+.++|++-+++++++      .++.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL------ag~~  110 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALEL------AGDQ  110 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHh------cCcc
Confidence            34455778889999999999999999884        566789999999999999999999999999998      3455


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      ......++...|.+|..+|+.+.|..-|+.+-++
T Consensus       111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence            6667778889999999999999999999998776

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.43  E-value=0.00076  Score=61.27  Aligned_cols=254  Identities=19%  Similarity=0.153  Sum_probs=146.0

Q ss_pred             HHcCChHHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHH-Hc-CCCC----HHH
Q 008016          173 VYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLES-RY-GKTS----ILL  244 (581)
Q Consensus       173 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~-~~-~~~~----~~~  244 (581)
                      ...|+++.|..++.++..... ..+.....++..+++.|......+ ++++|..+++++.++... .. ...+    ...
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            467999999999999888763 222333456778899999999999 999999999999999754 10 1111    246


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..++..++.+|...+.++...+ ..++++..+...+ ++|   ..+..--.+....++.+.+.+.+.+++....-     
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~---~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----  153 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKP---EVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-----  153 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCc---HHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----
Confidence            7788999999999888764444 3344444433322 223   23322223333378899999988888764210     


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHH--HHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEG--RELLEECL  400 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A--~~~~~~al  400 (581)
                      .............-+.. .....|...+...+...-.   .+++. .....  -+..++...+  +....  ++..+..+
T Consensus       154 ~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~---~~~~~-~~e~~--vl~~~~~~~~~~~~~~~~~i~~l~~~~  226 (278)
T PF08631_consen  154 SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFK---SSEDQ-WLEKL--VLTRVLLTTQSKDLSSSEKIESLEELL  226 (278)
T ss_pred             ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhC---CChhH-HHHHH--HHHHHHHHcCCccccchhHHHHHHHHH
Confidence            11112222122212222 2345666666666553221   11221 22221  2222333322  22222  34444444


Q ss_pred             HHHHHhcC-CCChHHH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          401 LITEKYKG-KEHPSFV----THLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       401 ~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      ....+..+ +-.+...    ..+.+.|.-..+.++|++|..+|+-++.
T Consensus       227 ~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  227 SIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            43333222 2233322    3455678888999999999999997764

It is also involved in sporulation [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.43  E-value=2.2e-06  Score=64.02  Aligned_cols=96  Identities=21%  Similarity=0.446  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      +++.+|..+...|++++|+..++++++..     +.   ...++..+|.++...|++++|+..+++++...        +
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-----PD---NADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-----Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence            46788999999999999999999998752     22   23678899999999999999999999998862        3


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      ....++..+|.++...|++++|...+.++++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            33467889999999999999999999988764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.37  E-value=6.1e-06  Score=70.95  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +++.+..+++.|+|..|...|..-++.       .++++..+.+++.||.+++.+|++++|...|..+.+-.    +++|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~----P~s~  212 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY----PKSP  212 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC----CCCC
Confidence            899999999999999999999998876       56688889999999999999999999999999988765    6678


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (581)
                      ...+.++.+|.+....|+.++|...|+++++.+
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            888899999999999999999999999998864

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.37  E-value=2e-06  Score=58.45  Aligned_cols=59  Identities=19%  Similarity=0.381  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      .+|..+...|++++|+..|+++++.        .|....++..+|.++..+|++++|+..|+++++.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999875        6888999999999999999999999999999976

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.35  E-value=0.0014  Score=59.50  Aligned_cols=255  Identities=17%  Similarity=0.140  Sum_probs=145.9

Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh-c-CCCC----hh
Q 008016          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELN-R-GTES----AD  285 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~-~-~~~~----~~  285 (581)
                      .+.+|+++.|..++.++-..............+..+++.|......+ ++++|..+++++.++.+.. . ...+    ..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999999877643222222367888999999999999 9999999999999997551 1 1122    24


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      ...++..++.+|...+.++...+ ..++++..++.++ +++...   ..--.+....++.+++.+.+.+++....-    
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~---~L~l~il~~~~~~~~~~~~L~~mi~~~~~----  153 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF---LLKLEILLKSFDEEEYEEILMRMIRSVDH----  153 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH---HHHHHHHhccCChhHHHHHHHHHHHhccc----
Confidence            46678899999999998865544 3444555444432 233322   11122233378899999999988875321    


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHc--cCHHHH--HHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRS--KNFVEA--ERLLRI  440 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~--g~~~~A--~~~~~~  440 (581)
                       ++.. +..+ .....-+.. .....|...+...+...-.    ..++ ...... +-.++...  ++....  ++..+.
T Consensus       154 -~e~~-~~~~-l~~i~~l~~-~~~~~a~~~ld~~l~~r~~----~~~~~~~e~~v-l~~~~~~~~~~~~~~~~~i~~l~~  224 (278)
T PF08631_consen  154 -SESN-FDSI-LHHIKQLAE-KSPELAAFCLDYLLLNRFK----SSEDQWLEKLV-LTRVLLTTQSKDLSSSEKIESLEE  224 (278)
T ss_pred             -ccch-HHHH-HHHHHHHHh-hCcHHHHHHHHHHHHHHhC----CChhHHHHHHH-HHHHHHHcCCccccchhHHHHHHH
Confidence             1111 1111 111111222 3345666666665543221    1122 222211 11222222  222222  344444


Q ss_pred             HHHHHHHhcC-CCCcchH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          441 CLDIMTKTVG-PDDQSIS----FPMLHLGITLYHLNRDKEAEKLVLEALY  485 (581)
Q Consensus       441 al~~~~~~~~-~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (581)
                      .++...+..+ +-.+...    ..+.+.|...++.++|++|..+|+-++.
T Consensus       225 ~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~  274 (278)
T PF08631_consen  225 LLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH  274 (278)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            4443333222 2222222    2344668888999999999999997763

It is also involved in sporulation [].

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.34  E-value=0.0001  Score=62.68  Aligned_cols=242  Identities=14%  Similarity=0.117  Sum_probs=162.6

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-CCcchHHHHHHH
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DDEPLLDAILLH  208 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~  208 (581)
                      +..++++|+.-|++++++-      +....--..++..+..+++..|++++-...|.+++...+... .+...  ...+.
T Consensus        39 ~e~~p~~Al~sF~kVlelE------gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~  110 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELE------GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINS  110 (440)
T ss_pred             cccCHHHHHHHHHHHHhcc------cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHH
Confidence            3457899999999999862      223344456788899999999999999999998877654321 11111  12233


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC----h
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES----A  284 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~  284 (581)
                      +-..-....+.+--..+|+..++..+..  .+......+-..+|.+|+..|.|.+-.+.+++....++...|.++    .
T Consensus       111 IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt  188 (440)
T KOG1464|consen  111 ILDYISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT  188 (440)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence            3333344555666667777777665543  222333445567899999999999988888887777665544433    2


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG-MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      ....+|..-..+|..+.+-.+-..+|++++.+-..+   .||... ...-.-|..+.+.|++++|-.-|-+|.+.+.++ 
T Consensus       189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs-  264 (440)
T KOG1464|consen  189 QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES-  264 (440)
T ss_pred             hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc-
Confidence            345666666788999999888888999998874433   244432 223334567888999999999999988877663 


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcC
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVG  387 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g  387 (581)
                        +.......--|..||..+...|
T Consensus       265 --GspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  265 --GSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             --CCcchhHHHHHHHHHHHHHHcC
Confidence              3333344445567788777765

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.33  E-value=9.5e-06  Score=69.81  Aligned_cols=102  Identities=23%  Similarity=0.239  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 008016          418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  497 (581)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  497 (581)
                      .++.|.-+...|+|.+|...|..-++.     .|+.+....+++.||.+++.+|++++|...|..+++-+     |++|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K  213 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK  213 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence            667777788899999999999998884     36778888999999999999999999999999998865     78888


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                      ..+++..||.+..++|+.+ +|...|+++++-+
T Consensus       214 ApdallKlg~~~~~l~~~d-~A~atl~qv~k~Y  245 (262)
T COG1729         214 APDALLKLGVSLGRLGNTD-EACATLQQVIKRY  245 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHC
Confidence            8899999999999999999 9999999998754

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00044  Score=58.66  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .+.+.+..++...|+|.-....+.+.++.       +++........+|.+..+.|+.+.|..+++++-+......+  -
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~--~  248 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG--L  248 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--c
Confidence            35677888888999999999999988873       33444556778899999999999999999987765544322  2


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      .....+..+.+.+|...+++.+|...+.+.+..        ++..+.+.++.|.+....|+...|++..+.+++.     
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-----  315 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-----  315 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            334567788899999999999999999888764        5667788899999999999999999999998876     


Q ss_pred             cCCCCChHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELL  383 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~  383 (581)
                        .|.+........+|..+|
T Consensus       316 --~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  316 --DPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             --CCccchhhhHHHHHHHHH
Confidence              333433333444554444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=0.00055  Score=56.36  Aligned_cols=230  Identities=13%  Similarity=0.070  Sum_probs=140.9

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +...+..++..|..|-..|-+.-|..-|.+++.+.       |..+.+++.+|..+...|+|+.|.+.|...+++     
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-----  128 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-----  128 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence            45566778888889999999999999999988775       777788999999999999999999999998875     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR-ILKI  316 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~  316 (581)
                         +|..-.+..+.|..++.-|++.-|.+-+.+-.+.     .+++|-... |..+   -...-++.+|..-+.+ +...
T Consensus       129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~L-WLYl---~E~k~dP~~A~tnL~qR~~~~  196 (297)
T COG4785         129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSL-WLYL---NEQKLDPKQAKTNLKQRAEKS  196 (297)
T ss_pred             ---CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHH-HHHH---HHhhCCHHHHHHHHHHHHHhc
Confidence               2444566778888888999999998877654443     233443322 1111   1233456666654432 2221


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL  396 (581)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (581)
                             +...  ..++ +...  ..|+..+ ...++++....++.   ..-......++..+|..+...|+.++|..+|
T Consensus       197 -------d~e~--WG~~-iV~~--yLgkiS~-e~l~~~~~a~a~~n---~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~Lf  260 (297)
T COG4785         197 -------DKEQ--WGWN-IVEF--YLGKISE-ETLMERLKADATDN---TSLAEHLTETYFYLGKYYLSLGDLDEATALF  260 (297)
T ss_pred             -------cHhh--hhHH-HHHH--HHhhccH-HHHHHHHHhhccch---HHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence                   1111  1111 1111  1222221 12333333322110   0112344567889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (581)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (581)
                      +-++.-..-    +..+...+...|+.+.-.+.+.
T Consensus       261 KLaiannVy----nfVE~RyA~~EL~~l~q~~~~l  291 (297)
T COG4785         261 KLAVANNVY----NFVEHRYALLELSLLGQDQDDL  291 (297)
T ss_pred             HHHHHHhHH----HHHHHHHHHHHHHHhccccchh
Confidence            987764211    1122233455555555444333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4.4e-05  Score=66.67  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIY  317 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~  317 (581)
                      +|..+.-|..||.+|...|++..|...|.+++++        .++....+..+|.++..+.   ...++...+++++.. 
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-  222 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-  222 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence            4556788999999999999999999999999998        4445666777787776553   456788999999875 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                             +|....+...||..++..|+|.+|...++..++.
T Consensus       223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence                   6677889999999999999999999999999987

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2e-05  Score=68.71  Aligned_cols=106  Identities=19%  Similarity=0.045  Sum_probs=88.1

Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Q 008016          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE--DDTKLLELLKRVLRI  529 (581)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~~A~~~~~~a~~~  529 (581)
                      .+|.....|..||.+|..+|++..|...|.+++++.     +++|   +.+..+|.++..+.+  ...++..++++++. 
T Consensus       151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-----g~n~---~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-  221 (287)
T COG4235         151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-----GDNP---EILLGLAEALYYQAGQQMTAKARALLRQALA-  221 (287)
T ss_pred             hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence            368888899999999999999999999999999876     5555   556777776655443  33588889999887 


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          530 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                             .+|..+.++..||..+..+|++.+|...++.+++..+
T Consensus       222 -------~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         222 -------LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             -------cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence                   3567789999999999999999999999999988754

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.28  E-value=4.7e-05  Score=74.86  Aligned_cols=137  Identities=11%  Similarity=0.079  Sum_probs=96.9

Q ss_pred             HHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHH
Q 008016          206 LLHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA--------KKAVEIYHRVITI  274 (581)
Q Consensus       206 ~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~  274 (581)
                      ++..|..+...+   +...|+.+|++++++        +|..+.++..++.++.....+        ..+....++++.+
T Consensus       342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            455566665544   478999999999986        344566666666666543222        2233333332222


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                            +..+....++..+|......|++++|...+++++++        .+. ..++..+|.++...|++++|++.|++
T Consensus       414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--------~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--------EMS-WLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  113333577888899999999999999999999986        233 57899999999999999999999999


Q ss_pred             HHHHHHhhccCCCCChHH
Q 008016          355 ALRVIKDSNYMSLDDSIM  372 (581)
Q Consensus       355 al~~~~~~~~~~~~~~~~  372 (581)
                      |+.+       .|..+..
T Consensus       479 A~~L-------~P~~pt~  489 (517)
T PRK10153        479 AFNL-------RPGENTL  489 (517)
T ss_pred             HHhc-------CCCCchH
Confidence            9986       5555543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.25  E-value=6.8e-05  Score=73.73  Aligned_cols=133  Identities=13%  Similarity=0.122  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHH
Q 008016          245 VTSLLGMAKVLGSIGR---AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAESVFSRI  313 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a  313 (581)
                      +..++..|..+...++   ..+|+.+|++++++        +|+.+.++..++.++.....+.        .+.....++
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            4445556666665544   78999999999998        6777888888777775543322        223333332


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (581)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (581)
                      +.+      +..+....++..+|..+...|++++|...+++++.+       .++    ...+..+|.++...|++++|+
T Consensus       411 ~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-------~ps----~~a~~~lG~~~~~~G~~~eA~  473 (517)
T PRK10153        411 VAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-------EMS----WLNYVLLGKVYELKGDNRLAA  473 (517)
T ss_pred             hhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCC----HHHHHHHHHHHHHcCCHHHHH
Confidence            221      123333567788888888999999999999999986       221    457789999999999999999


Q ss_pred             HHHHHHHHH
Q 008016          394 ELLEECLLI  402 (581)
Q Consensus       394 ~~~~~al~~  402 (581)
                      +.|++|+.+
T Consensus       474 ~~~~~A~~L  482 (517)
T PRK10153        474 DAYSTAFNL  482 (517)
T ss_pred             HHHHHHHhc
Confidence            999999887

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.24  E-value=0.0035  Score=56.70  Aligned_cols=298  Identities=15%  Similarity=0.081  Sum_probs=194.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL  248 (581)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  248 (581)
                      |.+-...||-..|...-.+..++.   ..+.+-+..  ..-+..-.-.|+++.|.+-|+-++.        +......-+
T Consensus        91 GliAagAGda~lARkmt~~~~~ll---ssDqepLIh--lLeAQaal~eG~~~~Ar~kfeAMl~--------dPEtRllGL  157 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLL---SSDQEPLIH--LLEAQAALLEGDYEDARKKFEAMLD--------DPETRLLGL  157 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhh---hccchHHHH--HHHHHHHHhcCchHHHHHHHHHHhc--------ChHHHHHhH
Confidence            444556788889988888876554   334444433  3335555678999999999998775        222222223


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (581)
                      ..|-.--...|..+.|..+-+++-..        -|....+....-...+..|+++.|+++.+...+..  ..+++..+.
T Consensus       158 RgLyleAqr~GareaAr~yAe~Aa~~--------Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR  227 (531)
T COG3898         158 RGLYLEAQRLGAREAARHYAERAAEK--------APQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAER  227 (531)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHhh--------ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHH
Confidence            33333445689999999999988776        44556666666677788999999999998776542  222222222


Q ss_pred             HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016          329 GMA--MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       329 ~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (581)
                      ..+  +..-+... -..+...|...-.++.++       .++-   .-.-..-+..+...|+..++-.+++.+-+.    
T Consensus       228 ~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL-------~pdl---vPaav~AAralf~d~~~rKg~~ilE~aWK~----  292 (531)
T COG3898         228 SRAVLLTAKAMSL-LDADPASARDDALEANKL-------APDL---VPAAVVAARALFRDGNLRKGSKILETAWKA----  292 (531)
T ss_pred             HHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc-------CCcc---chHHHHHHHHHHhccchhhhhhHHHHHHhc----
Confidence            222  22222222 234577788877777775       2221   112244678899999999999999987764    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                        ..||+....       |....--+.++.-++++-.+..     -.|+...+...++..-...|++..|..--+.+..+
T Consensus       293 --ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         293 --EPHPDIALL-------YVRARSGDTALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             --CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence              457766544       3333333455666666655321     24566778888899999999999999888877664


Q ss_pred             HHHHcCCCChhHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHH
Q 008016          487 REIAFGKDSLPVGEALDCLVSIQTRL-GEDDTKLLELLKRVLR  528 (581)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~~A~~~~~~a~~  528 (581)
                      .        | ...++..|+.+-... |+.. +....+.+++.
T Consensus       359 ~--------p-res~~lLlAdIeeAetGDqg-~vR~wlAqav~  391 (531)
T COG3898         359 A--------P-RESAYLLLADIEEAETGDQG-KVRQWLAQAVK  391 (531)
T ss_pred             C--------c-hhhHHHHHHHHHhhccCchH-HHHHHHHHHhc
Confidence            3        1 225677788887766 8877 88888888875

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.24  E-value=0.00023  Score=56.90  Aligned_cols=135  Identities=19%  Similarity=0.191  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..-...||......|++.+|..+|++++.-.       .......+..+++.....+++..|...+++..+.-      .
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------p  155 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------P  155 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------C
Confidence            3446778999999999999999999998642       23346678889999999999999999999887652      1


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      ..........+|..+...|++.+|...|+.++..+       |+..    .....+..+..+|+.++|..-+....+..
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y-------pg~~----ar~~Y~e~La~qgr~~ea~aq~~~v~d~~  223 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY-------PGPQ----ARIYYAEMLAKQGRLREANAQYVAVVDTA  223 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC-------CCHH----HHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            12233445668999999999999999999999873       2222    22456788999999999988776655544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.23  E-value=5.5e-05  Score=58.61  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  453 (581)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (581)
                      ..++.-|.-....|+|++|++.++.....+     +..+....+...|+.+|.+.|++++|+..+++-+++     .|.|
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~h   80 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPTH   80 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Confidence            345788999999999999999999866553     444556678899999999999999999999999985     6889


Q ss_pred             cchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHH
Q 008016          454 QSISFPMLHLGITLYHLNR---------------DKEAEKLVLEALYIR  487 (581)
Q Consensus       454 ~~~~~~~~~la~~~~~~g~---------------~~~A~~~~~~a~~~~  487 (581)
                      |.+..+++..|.++..+..               ..+|...|++.+..+
T Consensus        81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            9999999999998888766               667777777777655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.22  E-value=0.00033  Score=56.06  Aligned_cols=132  Identities=11%  Similarity=0.000  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                      .-...||......|++.+|..+|++++.-       --......+..+++..+..+++..|...+++..+....   ...
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG-------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa---~r~  159 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSG-------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA---FRS  159 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhcc-------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---cCC
Confidence            45667899999999999999999999862       22333456788999999999999999999988764311   122


Q ss_pred             hhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016          496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       496 ~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                      |   .....+++++...|++. +|...|+.++..+.     +    .......+..+.++|+.++|...+..+.+
T Consensus       160 p---d~~Ll~aR~laa~g~~a-~Aesafe~a~~~yp-----g----~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         160 P---DGHLLFARTLAAQGKYA-DAESAFEVAISYYP-----G----PQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             C---CchHHHHHHHHhcCCch-hHHHHHHHHHHhCC-----C----HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            2   44677899999999999 99999999987541     1    23344567889999999888876665544

>PRK15331 chaperone protein SicA; Provisional

Probab=98.22  E-value=1.9e-05  Score=62.56  Aligned_cols=102  Identities=11%  Similarity=0.040  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      ++......+..|.-++..|++++|...|+-..-.        ++.....+..||.++..+++|++|+..|..+..+.   
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~---  101 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL---  101 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            3456777888999999999999999999876554        44556678999999999999999999999988753   


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                        .++|   ......|.+|...|+.++|...|+.++..
T Consensus       102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence              2333   33677999999999999999999998873

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.22  E-value=5.3e-05  Score=58.67  Aligned_cols=104  Identities=18%  Similarity=0.190  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..+...|...++.|+|++|++.|+.....       -+.++-...+...++.+|+..|++++|+..+++.+++.    +.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh----P~   79 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH----PT   79 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC
Confidence            45899999999999999999999987765       34466677889999999999999999999999988874    88


Q ss_pred             cchHHHHHHHHHHHHHhccC---------------HHHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLEN---------------YEKSMLVYQRVINVL  233 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~---------------~~~A~~~~~~al~~~  233 (581)
                      +|....+++..|.+++.+..               ...|...|++.+...
T Consensus        80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            88888899999999888766               566666666666543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=0.0005  Score=58.38  Aligned_cols=139  Identities=12%  Similarity=0.103  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      ..+.+.+..++...|.|.-....+.++++..   ++..|   .....+|.+..+.|+.+.|..++++..+...+..+.  
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---~e~~p---~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~--  248 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---PEQEP---QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL--  248 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---CcccH---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--
Confidence            3456778888888999999999999887743   23333   345778999999999999999999887665554222  


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      .....+..+.+.+|.-.+++.+|...+.+++..        ++..+.+.++-|.|....|+..+|++.++.++..
T Consensus       249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            234566778889999999999999999888765        5566788889999999999999999999998876

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.19  E-value=5.8e-05  Score=70.71  Aligned_cols=120  Identities=11%  Similarity=0.081  Sum_probs=99.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      +-.++...++++.|+.++++....        .|.   +...++.++...++..+|++.+.+++..        .|....
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            445566678999999999886652        232   4456899999999999999999999965        455578


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      .+...+..+...++++.|+...+++.+.        .|....+|..|+.+|...|++++|+..+..+
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            8888999999999999999999999987        5777899999999999999999999777643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=98.16  E-value=2.3e-05  Score=62.15  Aligned_cols=101  Identities=8%  Similarity=0.009  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHh
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  193 (581)
                      ....+..++..|..++..|++++|..+|+-..-.          ++.+...+..||.++...++|++|+..|..+..+. 
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-  101 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-  101 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            3466777999999999999999999999876543          66667788999999999999999999999877664 


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (581)
                         .++|.   ..+..|.+|...|+.+.|+..|+.++.
T Consensus       102 ---~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        102 ---KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             ---cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence               23333   257899999999999999999999887

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=7.9e-05  Score=69.81  Aligned_cols=121  Identities=13%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (581)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (581)
                      .+...+...++++.|+.+++++...       .|..   ...++.++...++..+|+..+.+++..        .|....
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~pev---~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~  235 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRER-------DPEV---AVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE  235 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhc-------CCcH---HHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence            3455566678999999999986543       2443   456889999999999999999999853        233377


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                      .+...+..+...++++.|+...+++...        .|....+|..|+.+|...|++++|+..+..+
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            7888999999999999999999999998        6778899999999999999999999776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=0.0017  Score=55.93  Aligned_cols=227  Identities=14%  Similarity=0.133  Sum_probs=147.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      .+++-....+++++|+..|.+.+.---........+.-.+...++.+|...|++..-.+......+......   .|...
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k~k~~   84 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---KPKIT   84 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---chhHH
Confidence            456666778899999999988775410000001122345678899999999999877766666555544331   23333


Q ss_pred             HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016          330 MAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (581)
Q Consensus       330 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (581)
                      .....|...+ .....++.-+..+...++...+.    .........-..++.++...|+|.+|+......+.-.++.  
T Consensus        85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE----kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--  158 (421)
T COG5159          85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE----KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--  158 (421)
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence            3333333322 23456777778888877776542    1111122233567888999999999999999888877776  


Q ss_pred             CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH--HHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML--HLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~--~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      .+.+.....+..-..+|....+..++...+..|-......+-|   ....+..  .-|.......+|..|..+|-++++-
T Consensus       159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP---pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP---PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC---HHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            5566666777777888999999999988888777665554332   2222222  2245556778999999999999886


Q ss_pred             HH
Q 008016          487 RE  488 (581)
Q Consensus       487 ~~  488 (581)
                      +.
T Consensus       236 ft  237 (421)
T COG5159         236 FT  237 (421)
T ss_pred             cc
Confidence            64

>PRK11906 transcriptional regulator; Provisional

Probab=98.06  E-value=0.00026  Score=66.15  Aligned_cols=131  Identities=19%  Similarity=0.098  Sum_probs=102.9

Q ss_pred             HHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHH
Q 008016          207 LHMGSMYSTLE---NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITI  274 (581)
Q Consensus       207 ~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~  274 (581)
                      +..|......+   ..+.|..+|.+++...     +-+|..+.++..++.++...         ....+|..+.++++++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel  333 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI  333 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence            55555554443   3456788888888431     24566778888888877654         2345667777777776


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                              ++..+.++..+|.+....|+++.|...|++|+.+        +|..+.++...|.+....|+.++|.+.+++
T Consensus       334 --------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        334 --------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             --------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    5666889999999999999999999999999986        678899999999999999999999999999


Q ss_pred             HHHH
Q 008016          355 ALRV  358 (581)
Q Consensus       355 al~~  358 (581)
                      ++++
T Consensus       398 alrL  401 (458)
T PRK11906        398 SLQL  401 (458)
T ss_pred             Hhcc
Confidence            9986

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.05  E-value=1.9e-05  Score=54.20  Aligned_cols=55  Identities=18%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (581)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (581)
                      ++..|++++|+..|+++++.          .|....+...++.+|...|++++|...++++....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR----------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH----------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            36789999999999999987          88889999999999999999999999999876654

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=98.05  E-value=1.1e-05  Score=49.10  Aligned_cols=41  Identities=32%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP  497 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  497 (581)
                      +.++.++|.+|..+|++++|..++++++.+.+..+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            45789999999999999999999999999999999999984

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00046  Score=63.89  Aligned_cols=319  Identities=11%  Similarity=-0.010  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc------
Q 008016          164 ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY------  237 (581)
Q Consensus       164 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------  237 (581)
                      .+..-+..-+..+.++...+.++.+..+-.    +...+.  ++.--..|++.|..... ...++...+.....      
T Consensus        19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~----~~~~v~--~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~   91 (696)
T KOG2471|consen   19 SLLCQAHEQFNNSEFDRCLELLQELETRGE----SSGPVL--HNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVS   91 (696)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHhccc----ccccee--eehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchh
Confidence            334444455667889999888887766532    221111  23333345555554432 22333222222111      


Q ss_pred             -CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          238 -GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       238 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                       +-+.......+++.|.+|+....+..|++.........+...   ......+-...-.++....+.++|+.++.-.-++
T Consensus        92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le---~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~  168 (696)
T KOG2471|consen   92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLE---SSSAASVTLLSDLLAAETSQCEEALDYLNVLAEI  168 (696)
T ss_pred             cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             112223345677888889888899999888777666544321   1112223333445566667777777665433322


Q ss_pred             HHHH----cCCC----------CchHHH-----------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016          317 YTKV----YGEN----------DGRVGM-----------AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (581)
Q Consensus       317 ~~~~----~~~~----------~~~~~~-----------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (581)
                      ....    .+..          +|..+.           ....-...|....+...+..-.+.+..+.       .+.  
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a-------~~s--  239 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIA-------QDS--  239 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhc-------CCC--
Confidence            2111    1100          111000           01111112222223333333222222221       112  


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHHh
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLD-IMTKT  448 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~  448 (581)
                       ...+...+..++..|++.+|.+.+...- +.+...+...|.  ....++++|.++.+.|.|.-+..+|.+|++ ...+.
T Consensus       240 -~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  240 -SMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             -cHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence             2233556788899999999998876432 222221222333  334568999999999999999999999996 33333


Q ss_pred             cCCCC---------cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016          449 VGPDD---------QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  511 (581)
Q Consensus       449 ~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  511 (581)
                      ..+-.         ......+++.|..|...|++-.|.+.|.++...+.     .+|   ..|..|+.++..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-----~nP---rlWLRlAEcCim  381 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-----RNP---RLWLRLAECCIM  381 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-----cCc---HHHHHHHHHHHH
Confidence            22111         12345788999999999999999999999999873     345   567778877653

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.02  E-value=0.01  Score=53.84  Aligned_cols=300  Identities=13%  Similarity=0.022  Sum_probs=194.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (581)
                      +..+......|+-..|...-.++-+...        ....+-+...-+..-...|+++.|.+-|+.++..        |+
T Consensus        88 LStGliAagAGda~lARkmt~~~~~lls--------sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--------PE  151 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLS--------SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--------PE  151 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC--------hH
Confidence            3444555667888888887777654421        2222334444566677789999999999986432        44


Q ss_pred             HHH-HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          202 LDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       202 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ... -+..|-.--...|..+.|+.+-+++-...        |....+....-...+..|+++.|+++.+......  ..+
T Consensus       152 tRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie  221 (531)
T COG3898         152 TRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIE  221 (531)
T ss_pred             HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhc
Confidence            321 12222223346799999999999887753        2334555555566778999999999998766542  122


Q ss_pred             CCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          281 TESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       281 ~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ++..+.  ...+..-+.... ..+...|...-.++.++        .|+.+..-..-+..++..|+..++-.+++.+-+.
T Consensus       222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL--------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~  292 (531)
T COG3898         222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL--------APDLVPAAVVAARALFRDGNLRKGSKILETAWKA  292 (531)
T ss_pred             hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc--------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence            222222  222332333322 34577777777777765        3555556666788899999999999999988764


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                             .| ++.+       +.+|....--+.++.-++++-.+.     .-.++........+..-..-|++..|..--
T Consensus       293 -------eP-HP~i-------a~lY~~ar~gdta~dRlkRa~~L~-----slk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         293 -------EP-HPDI-------ALLYVRARSGDTALDRLKRAKKLE-----SLKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             -------CC-ChHH-------HHHHHHhcCCCcHHHHHHHHHHHH-----hcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence                   23 3332       334444444455566666665542     224556677778888889999999998887


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEALY  485 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~  485 (581)
                      +.+..+        .|. ...+..|+.+-... |+-.++..++-+++.
T Consensus       353 eaa~r~--------~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         353 EAAARE--------APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHhhh--------Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            777663        222 24667788887765 999999999998876

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.02  E-value=3.9e-05  Score=71.31  Aligned_cols=72  Identities=14%  Similarity=0.160  Sum_probs=64.1

Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      ..|.....++++|.+|...|++++|+..|++++++       .|++.....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35778899999999999999999999999999997       4555544456899999999999999999999999986

>PRK11906 transcriptional regulator; Provisional

Probab=97.99  E-value=0.00022  Score=66.54  Aligned_cols=162  Identities=11%  Similarity=0.042  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHcC---ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---CC------hHHHHHHHHHH
Q 008016          121 LFNEVKSMIMMG---NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---GD------LKFVQSLLDMM  188 (581)
Q Consensus       121 l~~~~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~------~~~A~~~~~~~  188 (581)
                      ++-+|......+   ..+.|+.+|.+++..       .+.+|..+.++..++.|++..   |-      ..+|....+++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA  330 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV  330 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            344554444333   345677777777722       333888999999999988664   22      22333444444


Q ss_pred             HHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                      .++       ++..+.++..+|.+....|+++.|...|++|+.+        .|..+.+++..|.+....|+.++|.+.+
T Consensus       331 vel-------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i  395 (458)
T PRK11906        331 SDI-------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI  395 (458)
T ss_pred             Hhc-------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            433       2555567889999999999999999999999986        3556888999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHH-HHHHHHH-HHHHcCCHHHHHHHHHHH
Q 008016          269 HRVITILELNRGTESADLVL-PLFSLGS-LFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       269 ~~al~~~~~~~~~~~~~~~~-~~~~la~-~~~~~g~~~~A~~~~~~a  313 (581)
                      ++++++        +|.... ....+-. .|+ ....++|+.+|-+-
T Consensus       396 ~~alrL--------sP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  433 (458)
T PRK11906        396 DKSLQL--------EPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE  433 (458)
T ss_pred             HHHhcc--------CchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence            999988        343332 2223333 343 45577777766543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.00025  Score=57.48  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      +-.-|.-++..|+|++|..-|..|+.++...   .......++.+.|.+..+++.++.|+.-..+++++        .|.
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~---~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--------~pt  166 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPST---STEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--------NPT  166 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccc---cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------Cch
Confidence            4556788899999999999999999987654   22456778899999999999999999999999998        677


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      ...++...|.+|.++..+++|++-|.+.++.
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            7888888999999999999999999999876

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.97  E-value=0.022  Score=55.93  Aligned_cols=182  Identities=16%  Similarity=0.083  Sum_probs=120.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH---HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          340 CANGNAEEAVELYKKALRVIKDSNYMSLDDSIM---ENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHP  412 (581)
Q Consensus       340 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (581)
                      .-.|+-+.++..+.++.+.      .+-..+..   .-.|+........    ....+.|.++++.....        .|
T Consensus       199 GF~gdR~~GL~~L~~~~~~------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP  264 (468)
T PF10300_consen  199 GFSGDRELGLRLLWEASKS------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YP  264 (468)
T ss_pred             CcCCcHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CC
Confidence            3568999999999887652      11222221   1112222111211    23455666666665544        35


Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016          413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (581)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  492 (581)
                      .....+...|.++...|+.++|++.+++++....+.    .+-...+++.++.++.-+++|++|..++.+..+.      
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~------  334 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE------  334 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc------
Confidence            556677888999999999999999999988533222    1222356789999999999999999999988763      


Q ss_pred             CCChhHHHHHHHHHHHHHHcCCC-------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 008016          493 KDSLPVGEALDCLVSIQTRLGED-------DTKLLELLKRVLRIQEREFGSESEEVMLTLKK  547 (581)
Q Consensus       493 ~~~~~~~~~~~~la~~~~~~g~~-------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  547 (581)
                       +....+...+..|.++...|+.       + +|.+++.++-....+..+...|-...+...
T Consensus       335 -s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~-~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK  394 (468)
T PF10300_consen  335 -SKWSKAFYAYLAAACLLMLGREEEAKEHKK-EAEELFRKVPKLKQKKAGKSLPLEKFVIRK  394 (468)
T ss_pred             -cccHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHHHHHhhhccCCCChHHHHHHH
Confidence             2233344456678889999988       7 888899988888777666555544444333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.96  E-value=5.9e-05  Score=70.17  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ..|.....++++|..|...|++++|+..|++++++     .+++.....+++++|.+|..+|++++|+..+++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            36788999999999999999999999999999997     2333333367999999999999999999999999986

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00013  Score=59.13  Aligned_cols=105  Identities=14%  Similarity=0.172  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ..+..+-..+..++..|+|++|..-|..+++.++...     ......+|.+.|.+++.++.++.|+.-..+++.+.   
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---  164 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---  164 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---
Confidence            3455688889999999999999999999999876543     45567778899999999999999999999988875   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                          |....++...+.+|.+..+|++|+.-|.+.++.
T Consensus       165 ----pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  165 ----PTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             ----chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence                677778888999999999999999999998875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.94  E-value=0.0094  Score=53.39  Aligned_cols=207  Identities=29%  Similarity=0.363  Sum_probs=154.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      .......+..+...+++..+...+......      ...+.....+..++..+...+++..+...+..++...      .
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  126 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD------P  126 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------C
Confidence            456677888899999999999999888764      1245567788889999999999999999998887642      1


Q ss_pred             CchHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAH-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       325 ~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      ..  .......+. ++...|++++|...+.+++..       .+............+..+...+++++|+..+.+++...
T Consensus       127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  197 (291)
T COG0457         127 DP--DLAEALLALGALYELGDYEEALELYEKALEL-------DPELNELAEALLALGALLEALGRYEEALELLEKALKLN  197 (291)
T ss_pred             Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence            11  122233333 899999999999999999552       11111223344556666888999999999999988874


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                      ...       ....+..++..+...+++++|...+..++..        .+.....+..++..+...|.++++...+.++
T Consensus       198 ~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T COG0457         198 PDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALEL--------DPDNAEALYNLALLLLELGRYEEALEALEKA  262 (291)
T ss_pred             ccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh--------CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence            221       3567888999999999999999999999885        2323445667777777778899999999988


Q ss_pred             HHHH
Q 008016          484 LYIR  487 (581)
Q Consensus       484 ~~~~  487 (581)
                      +...
T Consensus       263 ~~~~  266 (291)
T COG0457         263 LELD  266 (291)
T ss_pred             HHhC
Confidence            7754

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.93  E-value=0.007  Score=54.24  Aligned_cols=204  Identities=23%  Similarity=0.292  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ......+..+...+++..+...+...+..        ...+.....+...+..+...+++..+...+..+......    
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  127 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALEL--------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----  127 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh--------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC----
Confidence            34566777888999999999988888753        116677788889999999999999999999987665311    


Q ss_pred             cchHHHHHHHHHH-HHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGS-MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       199 ~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                       +..  .....+. ++...|++++|...+.+++...     +............+..+...+++++|+..+.+++...  
T Consensus       128 -~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--  197 (291)
T COG0457         128 -PDL--AEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLN--  197 (291)
T ss_pred             -cch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--
Confidence             111  2233334 8899999999999999995521     1012345556666666888999999999999999873  


Q ss_pred             hcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          278 NRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       278 ~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                            +. ....+..++..+...+++..|...+..++...        +.....+..++..+...+.++++...+.+++
T Consensus       198 ------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         198 ------PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             ------cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence                  23 46778889999999999999999999998863        2234556667777777788999999999988


Q ss_pred             HH
Q 008016          357 RV  358 (581)
Q Consensus       357 ~~  358 (581)
                      ..
T Consensus       264 ~~  265 (291)
T COG0457         264 EL  265 (291)
T ss_pred             Hh
Confidence            76

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.93  E-value=4.2e-05  Score=52.47  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=47.2

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      ...|++++|+..|++++..        .|....++..+|.+|...|++++|...+++++..
T Consensus         2 l~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5689999999999999988        6777888999999999999999999999998864

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.92  E-value=2.6e-05  Score=47.33  Aligned_cols=41  Identities=34%  Similarity=0.520  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (581)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (581)
                      +.++.++|.+|..+|++++|+.++++++.+.++.+|++||+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd   42 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD   42 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence            46789999999999999999999999999999999999875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.92  E-value=7.6e-05  Score=52.05  Aligned_cols=59  Identities=25%  Similarity=0.295  Sum_probs=52.6

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      |..+|...+++++|++.+++++.+        +|.....+...|.++...|++.+|...++++++..
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            356789999999999999999985        56677788999999999999999999999999754

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.015  Score=51.65  Aligned_cols=300  Identities=11%  Similarity=0.105  Sum_probs=186.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI----EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...+.......++++++..+...+.....    ...++    ..-.....+|..+...|+..+-..+.+........++.
T Consensus         8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~----~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K   83 (411)
T KOG1463|consen    8 LERAQNLVSVNQVEEAINILKSVLNKAQG----ASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK   83 (411)
T ss_pred             HHHHHHhcccchhhhhHHHHHHHhhhhcc----ccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence            55566666777788888888887763111    11111    23456778999999999999988888877666544322


Q ss_pred             CcchHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                        +..+.....+-..+. ..+..+.-+.++..+++...+.  ...-.....-..+...|...++|.+|+......+.-.+
T Consensus        84 --akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElK  159 (411)
T KOG1463|consen   84 --AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELK  159 (411)
T ss_pred             --HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence              333334444444433 3345556677777777765432  11112233445688999999999999999998888777


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV-GMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      +.  ++.+....++..-..+|....+..+|...+..|-......+-+  |.. +..-..-|.++....+|..|..||-++
T Consensus       160 Kl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEA  235 (411)
T KOG1463|consen  160 KL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEA  235 (411)
T ss_pred             hc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHH
Confidence            65  3455566677777888999999999998888776655444322  222 222223355666778999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--cCHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVE  433 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~  433 (581)
                      .+-+...    .++.....++-.+-.+-...+..++--.++..=..+.  .    ......++...+..+..+  .+|+.
T Consensus       236 fEgf~s~----~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y----~g~~i~AmkavAeA~~nRSLkdF~~  305 (411)
T KOG1463|consen  236 FEGFDSL----DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y----AGRDIDAMKAVAEAFGNRSLKDFEK  305 (411)
T ss_pred             Hcccccc----CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c----cCcchHHHHHHHHHhcCCcHHHHHH
Confidence            9876542    3333444444555555566777776555543322221  1    112234556666666443  45666


Q ss_pred             HHHHHHHHHH
Q 008016          434 AERLLRICLD  443 (581)
Q Consensus       434 A~~~~~~al~  443 (581)
                      |+.-|+.-+.
T Consensus       306 AL~~yk~eL~  315 (411)
T KOG1463|consen  306 ALADYKKELA  315 (411)
T ss_pred             HHHHhHHHHh
Confidence            6666655443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=0.013  Score=57.15  Aligned_cols=124  Identities=13%  Similarity=0.037  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINV-----LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      .|..++......-.++-|+..|-+.-..     .+++ +    ....--...+.+-.--|++++|.+.|-.+-..     
T Consensus       694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~----~i~s~~~q~aei~~~~g~feeaek~yld~drr-----  763 (1189)
T KOG2041|consen  694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-R----TIHSKEQQRAEISAFYGEFEEAEKLYLDADRR-----  763 (1189)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-h----hhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence            4556666666666667776666554221     1110 0    00001122345555568888888887543211     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                           +.+      ..++.+.|++-...++++..-      .+.++...-.++.++|..+.....+++|.++|.+.
T Consensus       764 -----DLA------ielr~klgDwfrV~qL~r~g~------~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  764 -----DLA------IELRKKLGDWFRVYQLIRNGG------SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             -----hhh------HHHHHhhhhHHHHHHHHHccC------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 111      123444555544333332210      01223335566777777777777777777777654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.85  E-value=0.00012  Score=50.93  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=52.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      ..+|...+++++|+.++++++..        +|.....+...|.++...|++.+|...++++++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56889999999999999999998        6677889999999999999999999999999976

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.022  Score=50.68  Aligned_cols=169  Identities=11%  Similarity=0.019  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +...+..++..|++.+|....++.++-          .|.+.-+....-.+++.+|+...-...+++.+..   ..++.|
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d----------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp  172 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDD----------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLP  172 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHh----------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCc
Confidence            444555667788888888878887765          5666666666667778888888777777665433   245556


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      -...+....+..+...|-|++|++..++++++.        +....+....+.++...|++.++.++..+.-...+.   
T Consensus       173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~---  241 (491)
T KOG2610|consen  173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ---  241 (491)
T ss_pred             HHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh---
Confidence            666666667777888899999999998888863        233566777888888889999888887664433221   


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (581)
                       ..-....-|...+.++...+.|+.|++.|.+-+
T Consensus       242 -s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  242 -SWMLASHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             -hhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence             111223345566778888889999998887643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.76  E-value=0.05  Score=53.52  Aligned_cols=177  Identities=18%  Similarity=0.083  Sum_probs=118.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch---HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGR---VGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      +..-.|+-+.++..+.++.+. ..   -..|.   ....|+.....+.    .....+.|.+++......+       |+
T Consensus       197 ~vGF~gdR~~GL~~L~~~~~~-~~---i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P~  265 (468)
T PF10300_consen  197 FVGFSGDRELGLRLLWEASKS-EN---IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------PN  265 (468)
T ss_pred             hcCcCCcHHHHHHHHHHHhcc-CC---cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------CC
Confidence            344568999999999887551 11   01111   1111222222222    2345667777777766653       33


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      ..   -.+...|+++...|+.++|++.+++++......    ..-...++..++.++..+++|++|..++.+..+.    
T Consensus       266 s~---lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~----  334 (468)
T PF10300_consen  266 SA---LFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE----  334 (468)
T ss_pred             cH---HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc----
Confidence            33   345778999999999999999999988543222    1223457889999999999999999999998773    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHHcCCCChh
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRD-------KEAEKLVLEALYIREIAFGKDSLP  497 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~~~~~~~~~~~  497 (581)
                         +.-..+...+..|.++...|+.       ++|.+++.++-....+..|...|.
T Consensus       335 ---s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~  387 (468)
T PF10300_consen  335 ---SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPL  387 (468)
T ss_pred             ---cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCCh
Confidence               2223344556678889999999       888899998888877766655553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.76  E-value=0.007  Score=44.60  Aligned_cols=121  Identities=15%  Similarity=0.173  Sum_probs=86.2

Q ss_pred             HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          287 VLPLFSLGS--LFIKEGKAVDAESVFSRILKIYTKVYGENDG----RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       287 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                      ..+|..|+.  -...-|-|++|..-+.+++++.+.+..+...    ..+.++..|+..+..+|+|++++...++++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            344444433  3456789999999999999998776433221    2567788899999999999999999999999887


Q ss_pred             hhccCCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016          361 DSNYMSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (581)
Q Consensus       361 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (581)
                      ....+..+. ..+..+.++.+..+...|+.++|+..|+.+-+...+..
T Consensus        87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERK  134 (144)
T PF12968_consen   87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERK  134 (144)
T ss_dssp             HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--
T ss_pred             hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHc
Confidence            754444442 33445557889999999999999999999988765543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.73  E-value=0.0002  Score=63.03  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      .-..|.-|+++|.|++|+.+|.+++..        .|.....+.+.+..|.+..+|..|+.-+..++.+        +..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~  163 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKL  163 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHH
Confidence            345688999999999999999999987        5667788899999999999999999999999987        335


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +..+|...+..-..+|+..+|.+-++.++++
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence            6788999999999999999999999999986

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.70  E-value=0.052  Score=51.85  Aligned_cols=284  Identities=15%  Similarity=0.086  Sum_probs=152.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHH
Q 008016          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM  330 (581)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~  330 (581)
                      +.+....|+|+.-.++    +...    ..+.+   .....-+......|+++++..+.+++.............. ...
T Consensus         5 ~eaaWrl~~Wd~l~~~----~~~~----~~~~~---~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~   73 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEY----LSQS----NEDSP---EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR   73 (352)
T ss_pred             HHHHHhcCChhhHHHH----Hhhc----cCCCh---hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            4566778888873222    2221    11112   3333344555588999999999999887654432221111 122


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC-
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKG-  408 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~-  408 (581)
                      .+..+..+ ....+.+++..+......          .....    ..+-..+. +......-....+..+......+. 
T Consensus        74 ~y~~l~~l-q~L~Elee~~~~~~~~~~----------~~~~~----~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~  138 (352)
T PF02259_consen   74 AYPSLVKL-QQLVELEEIIELKSNLSQ----------NPQDL----KSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSL  138 (352)
T ss_pred             HHHHHHHH-hHHHHHHHHHHHHHhhcc----------cHHHH----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence            22222211 122233333333311100          00000    01111111 111112223333333333333322 


Q ss_pred             -CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-H
Q 008016          409 -KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY-I  486 (581)
Q Consensus       409 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~  486 (581)
                       .........+...+.+..+.|+++.|...+.++.....    ........+....+.++...|+..+|+..++..+. .
T Consensus       139 ~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~  214 (352)
T PF02259_consen  139 ILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR  214 (352)
T ss_pred             ccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             12345667889999999999999999999988766311    11111334566779999999999999999998887 2


Q ss_pred             HHHHc-------------------------CCCChhHHHHHHHHHHHHHHc------CCChHHHHHHHHHHHHHHHHhcC
Q 008016          487 REIAF-------------------------GKDSLPVGEALDCLVSIQTRL------GEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       487 ~~~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      .....                         .......+.++..+|......      +..+ ++...|.++.++.     
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~-~~~~~~~~a~~~~-----  288 (352)
T PF02259_consen  215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSD-EILKYYKEATKLD-----  288 (352)
T ss_pred             hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHHHhC-----
Confidence            22110                         011123455666677777666      5666 7888888887753     


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCh-----------------hhhHHHHHHHHHHHHH
Q 008016          536 SESEEVMLTLKKVVSYLDKLGRK-----------------EEKFPLKKRLSNLRMK  574 (581)
Q Consensus       536 ~~~~~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~l~~~  574 (581)
                         |....++..+|..+.+.-+.                 ..|+..|-+++..+++
T Consensus       289 ---~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  289 ---PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence               55556677777665554221                 2366777777776655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.09  Score=54.10  Aligned_cols=214  Identities=14%  Similarity=0.084  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .+|..+|.+....|...+|++.|-++          ++   ...+.....+..+.|.|++-++++.-+.+-.+.      
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika----------dD---ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------ 1165 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DD---PSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------ 1165 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc----------CC---cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------
Confidence            35777888888888888888887765          22   234556667777788888888887766554322      


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      |   .+-..|...|.+.++..+-++++          .|+++..    ....|.-++..|.|+.|.-+|...-.      
T Consensus      1166 ~---~id~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~vSN------ 1222 (1666)
T KOG0985|consen 1166 P---YIDSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNVSN------ 1222 (1666)
T ss_pred             c---cchHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHhhh------
Confidence            1   11223445566666665544332          1233222    23456667777777777666654221      


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--H---------------HhcCCCChHHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT--E---------------KYKGKEHPSFVTHLLNLAASYS  426 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~  426 (581)
                                  +..|+..+...|+|..|....++|-...  +               +..|-+-...+.-+-.+...|.
T Consensus      1223 ------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1223 ------------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHH
Confidence                        2456667777777777777666653221  1               0112111122334556777888


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ..|-+++-+.+++.++.+-+.        ..-.+..||.+|.+ =++++-.+++
T Consensus      1291 ~rGyFeElIsl~Ea~LGLERA--------HMgmfTELaiLYsk-ykp~km~EHl 1335 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERA--------HMGMFTELAILYSK-YKPEKMMEHL 1335 (1666)
T ss_pred             hcCcHHHHHHHHHhhhchhHH--------HHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            899999988888887764221        12244566655543 3344443333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.64  E-value=0.0074  Score=49.29  Aligned_cols=100  Identities=17%  Similarity=0.089  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (581)
                      ..+...++..+...|++++|+..++.++..       ..|......+-.+|+.+...+|++++|+..+....        
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--------  153 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQ-------TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--------  153 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHcc-------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--------
Confidence            344567888999999999999999998864       33444445566889999999999999998877532        


Q ss_pred             CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                       ++..........|+++...|+-++|+..|++++..
T Consensus       154 -~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         154 -EESWAAIVAELRGDILLAKGDKQEARAAYEKALES  188 (207)
T ss_pred             -cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence             22334445567899999999999999999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.078  Score=52.13  Aligned_cols=184  Identities=10%  Similarity=0.041  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-----hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV-----DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (581)
                      ..++..+..++......-.++-|+..|-+.....     +.++.-+..    -...+.+-.--|+|++|.+.|-.+-.. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~----~~q~aei~~~~g~feeaek~yld~drr-  763 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSK----EQQRAEISAFYGEFEEAEKLYLDADRR-  763 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhH----HHHhHhHhhhhcchhHhhhhhhccchh-
Confidence            3456677777777777777777777776542221     111100000    012233334458999999888765221 


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          234 ESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       234 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                               +.+      ...+.+.|+|-.-.++++..      ..+.++...-.++.++|..+..+..+++|.++|.+.
T Consensus       764 ---------DLA------ielr~klgDwfrV~qL~r~g------~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  764 ---------DLA------IELRKKLGDWFRVYQLIRNG------GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             ---------hhh------HHHHHhhhhHHHHHHHHHcc------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                     111      23455667766554444321      012234455678889999999999999999888765


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016          314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (581)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (581)
                      -..                .++..+++...+|++-..+...          ++.+++.+    -.+|..+...|--++|.
T Consensus       823 ~~~----------------e~~~ecly~le~f~~LE~la~~----------Lpe~s~ll----p~~a~mf~svGMC~qAV  872 (1189)
T KOG2041|consen  823 GDT----------------ENQIECLYRLELFGELEVLART----------LPEDSELL----PVMADMFTSVGMCDQAV  872 (1189)
T ss_pred             cch----------------HhHHHHHHHHHhhhhHHHHHHh----------cCcccchH----HHHHHHHHhhchHHHHH
Confidence            322                2344555555555543332221          23334333    45777788888888887


Q ss_pred             HHHHH
Q 008016          394 ELLEE  398 (581)
Q Consensus       394 ~~~~~  398 (581)
                      +.|-+
T Consensus       873 ~a~Lr  877 (1189)
T KOG2041|consen  873 EAYLR  877 (1189)
T ss_pred             HHHHh
Confidence            76644

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.63  E-value=0.029  Score=53.01  Aligned_cols=126  Identities=17%  Similarity=0.177  Sum_probs=93.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC---------
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND---------  325 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------  325 (581)
                      ..+..+...-++.-++|+++        +|+.+.+|..|+.-  ......+|+++++++++..+..++.+.         
T Consensus       178 AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~  247 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEI--------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW  247 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence            34456777778888888888        56667777666542  234478899999999988877655331         


Q ss_pred             --------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          326 --------GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       326 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                              .....+-..+|.+..+.|+.++|++.++..++..       | ......+..+|..++...+.+.++..++.
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-------p-~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-------P-NLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-------C-ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                    0124456789999999999999999999988752       2 22235577999999999999999998887


Q ss_pred             H
Q 008016          398 E  398 (581)
Q Consensus       398 ~  398 (581)
                      +
T Consensus       320 k  320 (539)
T PF04184_consen  320 K  320 (539)
T ss_pred             H
Confidence            6

The molecular function of this protein is uncertain.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.037  Score=48.02  Aligned_cols=228  Identities=11%  Similarity=0.115  Sum_probs=150.6

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (581)
                      ...+....+..++++|+..|...+..-...  ......+...+...++..|...|++..-.+............  ..|.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~--dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f--tk~k   82 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSK--DEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF--TKPK   82 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCCh--hhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh--cchh
Confidence            456777788899999999998887531000  000123345567889999999999988877776655544332  2244


Q ss_pred             HHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          202 LDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       202 ~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ...+...+-..+ .....++.-+..+...++...+.  ...-.....-..++..+++.|.|.+|+......+.-.++.  
T Consensus        83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--  158 (421)
T COG5159          83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--  158 (421)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--
Confidence            444444443332 23456677777777777665432  0111223344567888999999999999999888877665  


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM--CSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      .+.+....++..-..+|....+..++...+..|.......+   .|....+.  ..-|...+...+|..|..+|-++++-
T Consensus       159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg  235 (421)
T COG5159         159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG  235 (421)
T ss_pred             cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence            45666777777778899999999998888877766554443   23322222  22355667788999999999999887


Q ss_pred             HH
Q 008016          359 IK  360 (581)
Q Consensus       359 ~~  360 (581)
                      +.
T Consensus       236 ft  237 (421)
T COG5159         236 FT  237 (421)
T ss_pred             cc
Confidence            54

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.60  E-value=0.054  Score=50.36  Aligned_cols=204  Identities=13%  Similarity=0.146  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 008016          219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (581)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (581)
                      +..+.....+.+...+...+........+..++-..|....+|+.-+++.+..-.+    ...+.+....+....|.++.
T Consensus       115 ~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALn  190 (374)
T PF13281_consen  115 YSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALN  190 (374)
T ss_pred             HhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHh
Confidence            33334444444444444333222233455667777899999999888887765443    11123344556677788888


Q ss_pred             H---cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCC
Q 008016          299 K---EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMS  366 (581)
Q Consensus       299 ~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~  366 (581)
                      +   .|+.++|+..+..++..       .......++..+|.+|-..         ...++|+..|.++.++       .
T Consensus       191 Rrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-------~  256 (374)
T PF13281_consen  191 RRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI-------E  256 (374)
T ss_pred             hcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC-------C
Confidence            8   89999999999887553       3344556777788877532         2356777777777665       2


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG----KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                      ++  ..  .-.|++.++...|...+...-+++.........|    .+.......+..++.+..-.|++++|.+.++++.
T Consensus       257 ~~--~Y--~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~  332 (374)
T PF13281_consen  257 PD--YY--SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF  332 (374)
T ss_pred             cc--cc--chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            21  11  1256777777777655444333333311111111    1122223345567777888999999999999998


Q ss_pred             HH
Q 008016          443 DI  444 (581)
Q Consensus       443 ~~  444 (581)
                      ..
T Consensus       333 ~l  334 (374)
T PF13281_consen  333 KL  334 (374)
T ss_pred             hc
Confidence            74

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.59  E-value=0.00028  Score=62.18  Aligned_cols=95  Identities=17%  Similarity=0.145  Sum_probs=81.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      -..|.-|+.+|+|++|+.+|.+++...        |.....+.+.|..|.++.+|..|+.-+..|+.+        +...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y  164 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLY  164 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHH
Confidence            346778999999999999999998763        445567888999999999999999999999986        3445


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ..+|...+.+-..+|+..+|.+-++.++++-
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence            6788889999999999999999999998854

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.58  E-value=0.0029  Score=54.27  Aligned_cols=100  Identities=24%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-----ChHHH
Q 008016          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-----HPSFV  415 (581)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~  415 (581)
                      ....+++|++.|.-|+-...-   .+.++...+.++..+|.+|...|+.+....++++|+..+.+.+...     ..+..
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~---~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~  165 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQI---KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA  165 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence            445788999999988877664   3456667788899999999999999988889999988887765332     33456


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      ..++.+|.+..+.|++++|..+|.+++.
T Consensus       166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~  193 (214)
T PF09986_consen  166 TLLYLIGELNRRLGNYDEAKRWFSRVIG  193 (214)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence            7888999999999999999999999987

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.55  E-value=0.031  Score=51.93  Aligned_cols=204  Identities=15%  Similarity=0.196  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 008016          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMY  213 (581)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  213 (581)
                      +..+.+...+.+...+..++  ......+.+...+-.+|....+|+.-+.+.+.+..+-..   +-+....+....|.++
T Consensus       115 ~~g~~~~l~~~L~~i~~rLd--~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~---~~~~~~~i~~~yafAL  189 (374)
T PF13281_consen  115 YSGARKELAKELRRIRQRLD--DPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTC---DVANQHNIKFQYAFAL  189 (374)
T ss_pred             HhhHHHHHHHHHHHHHHhhC--CHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCcc---chhcchHHHHHHHHHH
Confidence            33344555555555555442  112334556667777899999999999998887665211   1122333455677777


Q ss_pred             Hh---ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHHHHHhcCC
Q 008016          214 ST---LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---------GRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       214 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      .+   .|+.++|+..+..++...       .....+++..+|.+|-..         ...++|+..|.++.++.      
T Consensus       190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~------  256 (374)
T PF13281_consen  190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE------  256 (374)
T ss_pred             hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC------
Confidence            77   899999999998875532       222345666777777543         24566777777766652      


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG----ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                        ++ ...-.|++.++...|...+...-.++.........+    .+.......+..++.+..-.|++++|...+++++.
T Consensus       257 --~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  257 --PD-YYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             --cc-ccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence              21 223345666777777654444333333311111111    11222334455677788889999999999999987


Q ss_pred             H
Q 008016          358 V  358 (581)
Q Consensus       358 ~  358 (581)
                      .
T Consensus       334 l  334 (374)
T PF13281_consen  334 L  334 (374)
T ss_pred             c
Confidence            6

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.55  E-value=0.018  Score=42.56  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             HHHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          245 VTSLLGMAK--VLGSIGRAKKAVEIYHRVITILELNRGTESA----DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       245 ~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                      +.+|..|+.  -....|-|++|...+++++++.+.+......    -.+.++..|+..+...|+|++++..-++++..+.
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN   86 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN   86 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence            444544444  3455689999999999999998776443321    2356788899999999999999999999998877


Q ss_pred             HHcCCCCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          319 KVYGENDGR----VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       319 ~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +. |+-+.+    .+.+..+.+..+...|+.++|+..|+.+-++..+.
T Consensus        87 RR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER  133 (144)
T PF12968_consen   87 RR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER  133 (144)
T ss_dssp             HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred             hc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            65 222222    45566788899999999999999999999987654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.54  E-value=0.011  Score=48.37  Aligned_cols=100  Identities=18%  Similarity=0.054  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDD  453 (581)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  453 (581)
                      .....++..+...|++++|+..++.++...     .+......+-.+||.+...+|++++|...+....+         +
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~  155 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------E  155 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------c
Confidence            344678889999999999999999988643     22233345667899999999999999988776533         3


Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ..........|.++...|+-++|+..|+++++..
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            3344455677999999999999999999998853

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.059  Score=48.09  Aligned_cols=297  Identities=11%  Similarity=0.015  Sum_probs=178.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc---hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP---LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (581)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (581)
                      +.......++++++..+............+..   ..-.....+|..+...|+..+-.......-..+...   ..+..+
T Consensus        11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v---~Kakaa   87 (411)
T KOG1463|consen   11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSV---SKAKAA   87 (411)
T ss_pred             HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh---hhHHHH
Confidence            33344455667777777776664322111111   123456789999999999988777776665555443   223334


Q ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          246 TSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       246 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      .....+...... -+..+.-+.++..+++...+..  ........-..+..+|...++|.+|+......+.-.++.  .+
T Consensus        88 KlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DD  163 (411)
T KOG1463|consen   88 KLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DD  163 (411)
T ss_pred             HHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--cc
Confidence            444444444433 3455566777777777654320  011122334568899999999999999999998888876  44


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+........=...|....+..+|...+..|....... +.+  +...+..=..-|.++....+|.-|..+|-+|.+-+.
T Consensus       164 K~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai-Ycp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~  240 (411)
T KOG1463|consen  164 KILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI-YCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD  240 (411)
T ss_pred             ccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc-ccC--HHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence            45555666666778888889999988887776554332 111  222222222335556666899999999999988765


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc--CChHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL--NRDKEAEKLVLE  482 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~  482 (581)
                      ..  .+++....++..+-.+-...+..++--.++..=..+.  .   .. ....++..++..+...  .+|+.|..-|..
T Consensus       241 s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y---~g-~~i~AmkavAeA~~nRSLkdF~~AL~~yk~  312 (411)
T KOG1463|consen  241 SL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--Y---AG-RDIDAMKAVAEAFGNRSLKDFEKALADYKK  312 (411)
T ss_pred             cc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--c---cC-cchHHHHHHHHHhcCCcHHHHHHHHHHhHH
Confidence            54  3444555555555555566677776555443322211  1   12 2235667777776543  455666655554


Q ss_pred             H
Q 008016          483 A  483 (581)
Q Consensus       483 a  483 (581)
                      -
T Consensus       313 e  313 (411)
T KOG1463|consen  313 E  313 (411)
T ss_pred             H
Confidence            3

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.52  E-value=0.0048  Score=50.01  Aligned_cols=117  Identities=16%  Similarity=0.191  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKG------------IEEVAILDIIALGYVYIGDLKFVQSLL  185 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~  185 (581)
                      +..+...+......|+...++..+++++..++.-+-.+...            .....++..++..+...|++++|+..+
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34456667777888899999999999988775432111111            122345566788888999999999999


Q ss_pred             HHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      ++++...       |..-.++..+..+|...|+..+|+..|++......+..|..+
T Consensus        86 ~~~l~~d-------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   86 QRALALD-------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             HHHHHHS-------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHhcC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence            9988775       555667888999999999999999999999988876555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.51  E-value=0.006  Score=49.44  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=77.8

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTS--------------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      .|......|+.+.++..+++++.+++..+-++.              .....+...++..+...|++++|+..+++++..
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            344445566777777777777776543221110              134556777888899999999999999999998


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                              +|..-..+..+..+|...|+..+|...|++......+.+|..+
T Consensus        92 --------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P  134 (146)
T PF03704_consen   92 --------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP  134 (146)
T ss_dssp             --------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred             --------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence                    6777889999999999999999999999999998887666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00098  Score=55.83  Aligned_cols=103  Identities=16%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      .+..+-..+..++....|+.|++.|.+++.+          +|..+..+.+.+.|+++..+++.+..-..+++++.    
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~----   74 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD----   74 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhc----------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC----
Confidence            3455777888889999999999999999987          88888889999999999999999999998888775    


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (581)
                         |..+...+.+|........|++|+..++++..+.+..
T Consensus        75 ---~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   75 ---PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             ---hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence               7778889999999999999999999999999887664

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.48  E-value=0.0023  Score=54.89  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHH
Q 008016          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-----SILLVTSLL  249 (581)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~  249 (581)
                      ...+++|+..|.-++-.....+.++...+.++..+|++|...|+.+....++++|++...+.+...     ..+...+.+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            446667777777766666555666667788899999999999999988899999988877664332     224567888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      .+|.++.+.|++++|..+|.+++..
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            9999999999999999999998875

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.45  E-value=0.00029  Score=40.65  Aligned_cols=33  Identities=12%  Similarity=0.101  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          544 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ++..||.+|.++|++++|+++|++++.+.++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~   33 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE   33 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            467899999999999999999999998877654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.41  E-value=0.066  Score=54.06  Aligned_cols=280  Identities=13%  Similarity=0.103  Sum_probs=170.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHhh-cCCCcchHHHHHH
Q 008016          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI-----GDLKFVQSLLDMMSGIVDS-LKDDEPLLDAILL  207 (581)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~  207 (581)
                      ...|..+++.+.+            ..+......+|.+|..-     .|.+.|+.+++.+...... ....   ...+.+
T Consensus       228 ~~~a~~~~~~~a~------------~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~  292 (552)
T KOG1550|consen  228 LSEAFKYYREAAK------------LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQY  292 (552)
T ss_pred             hhHHHHHHHHHHh------------hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCcccc
Confidence            4567777776653            34556677777777653     6899999999987662100 0001   222567


Q ss_pred             HHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 008016          208 HMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG---RAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       208 ~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~  279 (581)
                      .+|.+|....     ++..|..+|.++-..       +   ...+.+.+|.++....   ++..|.++|..|...     
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-----  357 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL-------G---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-----  357 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhc-------C---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-----
Confidence            8899988743     677799999888664       1   2456777888887665   678999999988764     


Q ss_pred             CCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKK  354 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  354 (581)
                           ....+...++.+|..    .-+...|..++.++.+.       ++   +.+...++..+..- ++++.+.-.+..
T Consensus       358 -----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g~---~~A~~~~~~~~~~g~~~~~~~~~~~~~  422 (552)
T KOG1550|consen  358 -----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------GN---PSAAYLLGAFYEYGVGRYDTALALYLY  422 (552)
T ss_pred             -----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------cC---hhhHHHHHHHHHHccccccHHHHHHHH
Confidence                 125677778888764    35788999999998774       12   22333344433322 777777776666


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--
Q 008016          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--  428 (581)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--  428 (581)
                      ..+..-+.      .......+..........    .+...+...+.++-..          ....+...||++|..-  
T Consensus       423 ~a~~g~~~------~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~a~~~lgd~y~~g~g  486 (552)
T KOG1550|consen  423 LAELGYEV------AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------GNADAILKLGDYYYYGLG  486 (552)
T ss_pred             HHHhhhhH------HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc----------cCHHHHhhhcceeeecCC
Confidence            55542221      111111111111011111    1334444444443221          2234666778777653  


Q ss_pred             --cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc---CChHHHHHHHHHHHH
Q 008016          429 --KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL---NRDKEAEKLVLEALY  485 (581)
Q Consensus       429 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~  485 (581)
                        .+++.|...|..+...         .  .....++|.++..-   .....|.+++.++.+
T Consensus       487 ~~~d~~~a~~~y~~a~~~---------~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~  537 (552)
T KOG1550|consen  487 TGRDPEKAAAQYARASEQ---------G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE  537 (552)
T ss_pred             CCCChHHHHHHHHHHHHh---------h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence              4689999999988762         1  56788999888752   126788888887765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.41  E-value=0.038  Score=52.28  Aligned_cols=134  Identities=17%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC------
Q 008016          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM------  365 (581)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------  365 (581)
                      .+..-..+..+...-++.-.+|+++        +|+.+.+|..|+.  ....-..+|.++++++++..+.....      
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~  242 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQH  242 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence            3444456677888888888899987        4566677776663  22345788999999998876654111      


Q ss_pred             -CC--------CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          366 -SL--------DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       366 -~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                       ++        +......+...+|.+..+.|+.++|++.+++.++..      ...+...+..+|..++...+.|.++..
T Consensus       243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~  316 (539)
T PF04184_consen  243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQA  316 (539)
T ss_pred             ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHH
Confidence             11        111234556789999999999999999999987653      122456688999999999999999988


Q ss_pred             HHHHH
Q 008016          437 LLRIC  441 (581)
Q Consensus       437 ~~~~a  441 (581)
                      ++.+-
T Consensus       317 lL~kY  321 (539)
T PF04184_consen  317 LLAKY  321 (539)
T ss_pred             HHHHh
Confidence            88774

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.0019  Score=54.24  Aligned_cols=98  Identities=18%  Similarity=0.159  Sum_probs=83.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      ..-|.-+....+|+.|+..|.+++.+        +|..+..+.+-+.++.+..+++.+..-..+++++        .|+.
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N~   77 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPNL   77 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChHH
Confidence            33455566667789999999998876        4667778899999999999999999999999985        5778


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      +...+.+|........+++|+..+.++..+.+..
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence            8899999999999999999999999998877654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.37  E-value=0.14  Score=48.78  Aligned_cols=130  Identities=15%  Similarity=0.118  Sum_probs=92.3

Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL-ITE  404 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~  404 (581)
                      ......+...+.+..+.|+++.|...+.++......      .......+....+.++...|+..+|+..++..+. ...
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~------~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~  216 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS------SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS  216 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc------ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            456788899999999999999999999987765221      1111233446678899999999999999998887 222


Q ss_pred             Hhc-------------------------CCCChHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          405 KYK-------------------------GKEHPSFVTHLLNLAASYSRS------KNFVEAERLLRICLDIMTKTVGPDD  453 (581)
Q Consensus       405 ~~~-------------------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~  453 (581)
                      ...                         .......+.++..+|......      +..+++...|+++..+        +
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~--------~  288 (352)
T PF02259_consen  217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL--------D  288 (352)
T ss_pred             hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh--------C
Confidence            110                         011233456777777777777      8888899999999885        4


Q ss_pred             cchHHHHHHHHHHHHH
Q 008016          454 QSISFPMLHLGITLYH  469 (581)
Q Consensus       454 ~~~~~~~~~la~~~~~  469 (581)
                      |....++..+|..+..
T Consensus       289 ~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  289 PSWEKAWHSWALFNDK  304 (352)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            5555677777776654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.0062  Score=51.40  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC---CCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (581)
                      ..++..-|+-++..|+|.+|...|+.|+...+.+.-   +..|       .....+.+.+.++...|+|-++++.....+
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999987766532   2222       234567889999999999999999999988


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      ..        +|....+++..|......=+.++|..-|.+++++
T Consensus       258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            86        6778999999999999999999999999999986

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.0037  Score=52.67  Aligned_cols=113  Identities=17%  Similarity=0.037  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC---ChhH-------HHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD---SLPV-------GEALDCLVSIQTRLGEDDTKLLELLKRVL  527 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~-------~~~~~~la~~~~~~g~~~~~A~~~~~~a~  527 (581)
                      .++..-|+-++..|+|.+|...|+.|+...+.+.-..   .|..       ...+.+.+.++...|++- ++++.....+
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y-evleh~seiL  257 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY-EVLEHCSEIL  257 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH-HHHHHHHHHH
Confidence            3566778889999999999999999998776553322   3322       234678889999999888 7777777776


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016          528 RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  579 (581)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~  579 (581)
                      .        .+|.+..+++..|.+....=+..+|..-|.+++++.+.....+
T Consensus       258 ~--------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  258 R--------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             h--------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            5        4688899999999999999999999999999999988877654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=0.13  Score=45.92  Aligned_cols=165  Identities=11%  Similarity=-0.057  Sum_probs=122.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016          169 ALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL  248 (581)
Q Consensus       169 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  248 (581)
                      +......|++.+|-...+++++..       |...-++...-.+++..|+...-...+++.+...    .++.|-...+.
T Consensus       110 aai~~~~g~~h~a~~~wdklL~d~-------PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv~  178 (491)
T KOG2610|consen  110 AAILWGRGKHHEAAIEWDKLLDDY-------PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYVH  178 (491)
T ss_pred             HHHhhccccccHHHHHHHHHHHhC-------chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHHH
Confidence            334456788888777777765443       5544455666677888999998888888877653    34556667777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (581)
                      ..++..+...|-|++|++..++++++        ++....+...++.++...|++.++.++..+.-...+..    ....
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mla  246 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLA  246 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHH
Confidence            78888999999999999999999988        55567788889999999999999999887754433211    1122


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                      ...|-..|..+...+.|+.|++.|..-+
T Consensus       247 sHNyWH~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  247 SHNYWHTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence            3345567888888899999999998743

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.22  E-value=0.32  Score=49.65  Aligned_cols=197  Identities=13%  Similarity=0.072  Sum_probs=117.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      -+......+++.+|+....+.++.          +|....+...-|....++|+.++|..+++.....    +.+   ..
T Consensus        15 pi~d~ld~~qfkkal~~~~kllkk----------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~----~~~---D~   77 (932)
T KOG2053|consen   15 PIYDLLDSSQFKKALAKLGKLLKK----------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGL----KGT---DD   77 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC----CCC---ch
Confidence            344556788999999999888876          7777788888889999999999999777664322    222   23


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .++..+-.+|...|++++|..+|++++...        |. ...+..+-.+|.+.+.|.+-.+.   ++++++..  +..
T Consensus        78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~~--pk~  143 (932)
T KOG2053|consen   78 LTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKNF--PKR  143 (932)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC--Ccc
Confidence            456778889999999999999999998752        22 34455566677777777654433   33333321  223


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHcCCC-Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAES--VFSRILKIYTKVYGEN-DGR-VGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                      +..  .|..+..+.......+....  ..--+-....+.+... ... .+.. ...-.++..+|++++|.+.+..
T Consensus       144 ~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~  215 (932)
T KOG2053|consen  144 AYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAI  215 (932)
T ss_pred             cch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHH
Confidence            322  22233333333333333332  0001111111221111 111 1222 1223456678999999998843

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.19  E-value=0.00049  Score=39.19  Aligned_cols=32  Identities=19%  Similarity=0.114  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      .++..+|.+|..+|++++|+..|++++++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999998765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.16  E-value=0.033  Score=46.40  Aligned_cols=111  Identities=15%  Similarity=0.088  Sum_probs=87.3

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      ......++..+|..|...|+.++|.+.|.++.+..     .........+.++..+....|++.....+..++-..... 
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-  105 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-  105 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-
Confidence            45567789999999999999999999999987753     223456777888999999999999999999999888765 


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                         +.+..........-|..+...++|.+|-..|-.+...
T Consensus       106 ---~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  106 ---GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence               3344444445555677778889999999888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.14  E-value=0.038  Score=46.02  Aligned_cols=110  Identities=19%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      ......++..+|..|.+.|+.++|.+.|.++.+..       ........++.++..+....|++.....+..++-....
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            34567889999999999999999999999987753       33455567778899999999999999999999988765


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      ..  .+..........-|..+...++|.+|-+.|-.+..
T Consensus       105 ~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  105 KG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             cc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            52  22222223334456667778999999998877754

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.088  Score=46.43  Aligned_cols=130  Identities=18%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ..+..+......|++.+|...|..+++.          .++...+...++.+|...|+.+.|..++...-....      
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~----------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------  199 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQA----------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------  199 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHh----------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------
Confidence            3667788899999999999999999987          666688899999999999999999999877422210      


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      ......+......+.+.....+....-+++ .        .+|+...+-+.+|..+...|+.++|.+.+-..+..
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRL-A--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-H--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            011111111112223333333322222221 1        13444677788999999999999999888665554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.43  Score=49.47  Aligned_cols=213  Identities=15%  Similarity=0.046  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +...|.+-.+.|...+|++.|-++               +++..+........+.|.|++-+.++..+.+..+.     |
T Consensus      1107 WsqlakAQL~~~~v~dAieSyika---------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-----~ 1166 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA---------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-----P 1166 (1666)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhc---------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-----c
Confidence            455566666677777777666543               23445666777778888888888888887765432     2


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ..   -..+-.+|.+.++..+-.++.          .|++...    ....|.-++..|.|+.|.-+|...         
T Consensus      1167 ~i---d~eLi~AyAkt~rl~elE~fi----------~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1167 YI---DSELIFAYAKTNRLTELEEFI----------AGPNVAN----IQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred             cc---hHHHHHHHHHhchHHHHHHHh----------cCCCchh----HHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence            21   123344555666655443332          2333221    234566677777777766555432         


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--H---------------HHcCCCCchHHHHHHHHHHHHHHCC
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY--T---------------KVYGENDGRVGMAMCSLAHAKCANG  343 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~---------------~~~~~~~~~~~~~~~~la~~~~~~g  343 (581)
                             .-+..|+..+...|+|..|...-++|-...  +               +..|-+-.-.+.-+-.+...|...|
T Consensus      1221 -------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1221 -------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcC
Confidence                   224455666666677777666665553220  0               0111111112334556777888899


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                      -+++-+.+++.++.+-+.       +   ..++..||.+|.+ -++++-.++++
T Consensus      1294 yFeElIsl~Ea~LGLERA-------H---MgmfTELaiLYsk-ykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLERA-------H---MGMFTELAILYSK-YKPEKMMEHLK 1336 (1666)
T ss_pred             cHHHHHHHHHhhhchhHH-------H---HHHHHHHHHHHHh-cCHHHHHHHHH
Confidence            999998888888765332       1   2344667766654 34555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.09  E-value=0.0018  Score=39.41  Aligned_cols=42  Identities=17%  Similarity=0.316  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (581)
                      .++..+|..|...|++++|++.|+++++.        .|+...++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            35788999999999999999999999998        5666777777664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.07  E-value=0.002  Score=37.12  Aligned_cols=31  Identities=32%  Similarity=0.538  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      ++.+||.+|...|++++|+++|++++.+..+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~   31 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD   31 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            4788999999999999999999999877554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.05  E-value=0.47  Score=48.51  Aligned_cols=229  Identities=17%  Similarity=0.103  Sum_probs=128.6

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 008016          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  294 (581)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  294 (581)
                      ..+++.+|.....+.++.        +|....+...-|-+..++|+.++|..+++. +...       .+..-.++..+-
T Consensus        21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~-------~~~D~~tLq~l~   84 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGL-------KGTDDLTLQFLQ   84 (932)
T ss_pred             hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccC-------CCCchHHHHHHH
Confidence            567888888888877763        344445555567788999999999965543 3321       222456677889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH
Q 008016          295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN  374 (581)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  374 (581)
                      .+|..+|++++|..+|+++...+        |. -..+..+-.+|.+.+.|.+=.+.   ++++++.   . |..+.+  
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~qQka---a~~LyK~---~-pk~~yy--  146 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKKQQKA---ALQLYKN---F-PKRAYY--  146 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh---C-Ccccch--
Confidence            99999999999999999998752        33 34445555667777766553332   3333332   2 333322  


Q ss_pred             HHHHHHHHHHHcCChHHHHH-----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016          375 MRIDLAELLHIVGRGQEGRE-----LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~-----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (581)
                      .|..+..+.......++...     +.++..+..-+..| .-...+... ..-.++..+|++++|.+.+..-+.-  .. 
T Consensus       147 fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~--~l-  221 (932)
T KOG2053|consen  147 FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLLILELQGKYQEALEFLAITLAE--KL-  221 (932)
T ss_pred             HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHH--hc-
Confidence            23334444444444444333     11111111111101 111112221 2224567789999999988543331  11 


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (581)
                         .+........-...+...+++.+-.++..+.+.
T Consensus       222 ---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  222 ---TSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             ---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence               111122223345566777888887777776665

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.05  E-value=0.012  Score=43.12  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016          425 YSRSKNFVEAERLLRICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  503 (581)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (581)
                      ....|++.+|.+.+.+..+......... ......++.++|.++...|++++|...+++++++.++.  .|......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence            3567999999999999999876653322 11345577889999999999999999999999999876  44444444555


Q ss_pred             HHHHH
Q 008016          504 CLVSI  508 (581)
Q Consensus       504 ~la~~  508 (581)
                      .+..+
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            55444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.03  E-value=0.47  Score=48.08  Aligned_cols=280  Identities=16%  Similarity=0.057  Sum_probs=169.2

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016          178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST-----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (581)
Q Consensus       178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (581)
                      ...|..+++.+.+.-         .......+|.+|..     ..+.+.|+.+++.+.....+.....   ...+.+.+|
T Consensus       228 ~~~a~~~~~~~a~~g---------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg  295 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLG  295 (552)
T ss_pred             hhHHHHHHHHHHhhc---------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHH
Confidence            456666666654431         22345666776653     4789999999999877311110001   234677889


Q ss_pred             HHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCC
Q 008016          253 KVLGSIG-----RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       253 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      .+|....     ++..|..++.++-+.          ....+.+.+|.++....   +...|.++|..|...        
T Consensus       296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--------  357 (552)
T KOG1550|consen  296 RLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--------  357 (552)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--------
Confidence            9998753     678899999888765          23456788888887765   567899999988763        


Q ss_pred             CchHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCAN----GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEEC  399 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  399 (581)
                        ....+...++.+|..-    -+...|..+++++.+.       +  ++.   +...++..+..- ++++.+...+...
T Consensus       358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-------g--~~~---A~~~~~~~~~~g~~~~~~~~~~~~~~  423 (552)
T KOG1550|consen  358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-------G--NPS---AAYLLGAFYEYGVGRYDTALALYLYL  423 (552)
T ss_pred             --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-------c--Chh---hHHHHHHHHHHccccccHHHHHHHHH
Confidence              3346677888877643    4789999999998876       1  111   112233333222 7777777666555


Q ss_pred             HHHHHHhcCCCChHHHHHH-HHHHHHHHHc----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc----
Q 008016          400 LLITEKYKGKEHPSFVTHL-LNLAASYSRS----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL----  470 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~-~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----  470 (581)
                      .+...+.     +.....+ ..........    .+...+...+.++..          .....+...||.+|..-    
T Consensus       424 a~~g~~~-----~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~----------~g~~~a~~~lgd~y~~g~g~~  488 (552)
T KOG1550|consen  424 AELGYEV-----AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA----------QGNADAILKLGDYYYYGLGTG  488 (552)
T ss_pred             HHhhhhH-----HhhHHHHHHHhccccccccccccchhHHHHHHHHHHh----------ccCHHHHhhhcceeeecCCCC
Confidence            4443221     1111111 1111111111    245556666666543          22334667788887754    


Q ss_pred             CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---ChHHHHHHHHHHHH
Q 008016          471 NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLKRVLR  528 (581)
Q Consensus       471 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~~A~~~~~~a~~  528 (581)
                      .+++.|...|..+....           +....++|.++..---   .. .|..++.++.+
T Consensus       489 ~d~~~a~~~y~~a~~~~-----------~~~~~nlg~~~e~g~g~~~~~-~a~~~~~~~~~  537 (552)
T KOG1550|consen  489 RDPEKAAAQYARASEQG-----------AQALFNLGYMHEHGEGIKVLH-LAKRYYDQASE  537 (552)
T ss_pred             CChHHHHHHHHHHHHhh-----------hHHHhhhhhHHhcCcCcchhH-HHHHHHHHHHh
Confidence            45889999998885521           5778889988864221   24 66667766654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.98  E-value=0.00083  Score=38.21  Aligned_cols=32  Identities=16%  Similarity=0.049  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      .++..+|.++..+|++++|++.|++++.+.++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            56889999999999999999999999998764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.97  E-value=0.0031  Score=38.36  Aligned_cols=41  Identities=37%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (581)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (581)
                      ++..+|..|...|++++|++.|+++++.        +|+...++..+|.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence            5778999999999999999999999995        5666677777764

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.022  Score=50.58  Aligned_cols=106  Identities=10%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      ...+.-+-.-|.-|++..+|..|+..|.+.+..-    .++....+..|.+.+.+....|+|..|+.-..+++.+     
T Consensus        78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~-----  148 (390)
T KOG0551|consen   78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL-----  148 (390)
T ss_pred             HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3466667778999999999999999999998752    3344567888999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                         .|....++..-+.++....++.+|..+.+..+.+.
T Consensus       149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence               67788899999999999999999999998887653

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.91  E-value=0.021  Score=41.85  Aligned_cols=81  Identities=16%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTE-SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMC  333 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  333 (581)
                      ....|++.+|++.+.+..+......... ......+..++|.++...|++++|...+++++++.++.  .+......++.
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~   85 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS   85 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence            3468999999999999998876542222 12355678889999999999999999999999999886  33334444444


Q ss_pred             HHHH
Q 008016          334 SLAH  337 (581)
Q Consensus       334 ~la~  337 (581)
                      .+..
T Consensus        86 ~~~~   89 (94)
T PF12862_consen   86 WLAN   89 (94)
T ss_pred             HHHH
Confidence            4443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.91  E-value=0.4  Score=47.00  Aligned_cols=189  Identities=14%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                      ..++..+...|+|.+|.+.|.+.-...+.+    .-..-.-.+..+.-+...|..++-..+.++-.+.....   ..|. 
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAl----EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---kePk-  707 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGHENRAL----EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---KEPK-  707 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCchhhHH----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---CCcH-
Confidence            346777888899999998887532211100    00001123445556666666666555555444433322   1222 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESV------FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                           .-|.++...|+.++|+..      .+-++++.++.    +......+..++..+.....+.-|.+.|.+.-+.  
T Consensus       708 -----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--  776 (1081)
T KOG1538|consen  708 -----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--  776 (1081)
T ss_pred             -----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhccH--
Confidence                 236677888998888764      34455555443    2223344555565566666666676666654322  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                                      ..+..++...+++++|..+.++--+.           ...++.-.|..+....++++|.+.|.+
T Consensus       777 ----------------ksiVqlHve~~~W~eAFalAe~hPe~-----------~~dVy~pyaqwLAE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  777 ----------------KSLVQLHVETQRWDEAFALAEKHPEF-----------KDDVYMPYAQWLAENDRFEEAQKAFHK  829 (1081)
T ss_pred             ----------------HHHhhheeecccchHhHhhhhhCccc-----------cccccchHHHHhhhhhhHHHHHHHHHH
Confidence                            23445677788888887765542211           122455556666666667766666655


Q ss_pred             H
Q 008016          441 C  441 (581)
Q Consensus       441 a  441 (581)
                      |
T Consensus       830 A  830 (1081)
T KOG1538|consen  830 A  830 (1081)
T ss_pred             h
Confidence            4

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.88  E-value=0.0012  Score=37.36  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 008016          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE  307 (581)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  307 (581)
                      |++++++        +|....+++++|.+|...|++++|+
T Consensus         2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6778877        7888999999999999999999986

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.017  Score=51.34  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (581)
                      ..+..+-.-|.-|++..+|..|...|.+++..      ..+++...+..|.|.|.+....|+|..|+.-..+++.+    
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~------kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----  148 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKK------KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----  148 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh------cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence            36666777889999999999999999999886      35677777889999999999999999999999998876    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                          .|....+++.=|.++....++.+|..+.+..+.+.
T Consensus       149 ----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  149 ----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             ----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence                46677888889999999999999999998887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.80  E-value=0.028  Score=51.15  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                      +|..+.....+.+..+.|...|++|..        .......+|...|.+... .++.+.|.+.|+.+++.+     +.+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~   69 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence            455566677777779999999999964        223344577788888666 566666999999999876     344


Q ss_pred             hhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       496 ~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      +   ..+......+...|+.+ .|..+|++++...     +.......++......-.+.|+.+....+.+++.++.++
T Consensus        70 ~---~~~~~Y~~~l~~~~d~~-~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   70 P---DFWLEYLDFLIKLNDIN-NARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             H---HHHHHHHHHHHHTT-HH-HHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             H---HHHHHHHHHHHHhCcHH-HHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            4   44555667778889888 9999999887631     111114567778888889999999999999998887654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.76  E-value=0.0049  Score=34.93  Aligned_cols=30  Identities=37%  Similarity=0.504  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +.++.++|.+|..+|++++|+..|++++++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            357899999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.74  E-value=0.0014  Score=37.03  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH
Q 008016          141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ  182 (581)
Q Consensus       141 ~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  182 (581)
                      |+++++.          +|..+.+++++|.+|...|++++|+
T Consensus         2 y~kAie~----------~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIEL----------NPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHH----------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            6677777          8999999999999999999999986

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.60  E-value=0.0038  Score=35.37  Aligned_cols=31  Identities=16%  Similarity=0.165  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      .++..+|.+|...|++++|...|++++++.+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4688999999999999999999999999876

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.59  E-value=0.019  Score=46.42  Aligned_cols=92  Identities=10%  Similarity=0.127  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016          134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (581)
Q Consensus       134 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (581)
                      |+.|.+.++.....          +|.+++.+++-|.++..+.++   .++..+++.++..++..-.-+|....+++.+|
T Consensus         7 FE~ark~aea~y~~----------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG   76 (186)
T PF06552_consen    7 FEHARKKAEAAYAK----------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG   76 (186)
T ss_dssp             HHHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            34555555555544          788888999888888776544   34555555554444332233377777889999


Q ss_pred             HHHHhcc----CHHHHHHHHHHHHHHHHH
Q 008016          211 SMYSTLE----NYEKSMLVYQRVINVLES  235 (581)
Q Consensus       211 ~~~~~~g----~~~~A~~~~~~al~~~~~  235 (581)
                      .+|...+    +..+|..+|+++....++
T Consensus        77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   77 NAYTSLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            9887654    344566666666555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.55  E-value=0.0068  Score=34.30  Aligned_cols=30  Identities=20%  Similarity=0.462  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (581)
                      .+++.+|.++...|++++|+.+|++++.+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            468899999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.52  E-value=0.025  Score=45.76  Aligned_cols=101  Identities=11%  Similarity=0.086  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 008016          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (581)
                      |+.|.+.++.....        +|.....+++-|..+..+.++   .++.++++.++..++..+. -+|....++.++|.
T Consensus         7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHH
Confidence            34455555544443        566677778878777766544   4465666666655544321 15677788889999


Q ss_pred             HHHHCC----CHHHHHHHHHHHHHHHHhhccCCCCCh
Q 008016          338 AKCANG----NAEEAVELYKKALRVIKDSNYMSLDDS  370 (581)
Q Consensus       338 ~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~  370 (581)
                      +|...+    +..+|..+|+++...+++.....|++.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne  114 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE  114 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence            887654    455677777777776655422344433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.51  E-value=0.078  Score=48.28  Aligned_cols=134  Identities=10%  Similarity=0.058  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      +|..+.....+.+..+.|..+|.+|++.        ......+|...|.+... .++.+.|..+|+.+++.+.       
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-------   67 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-------   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-------
Confidence            3555566666667789999999998632        22334667778888666 5666669999999998752       


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                       .....+......+...|+.+.|..+|++++...       +.......+|......-...|+.+....+.+++.+..
T Consensus        68 -~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   68 -SDPDFWLEYLDFLIKLNDINNARALFERAISSL-------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             -T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence             223444555567788999999999999998752       1122134566777778888899999998888877764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.97  Score=43.65  Aligned_cols=244  Identities=14%  Similarity=0.072  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      +.....-+..+...|+.+.|+..++.+++...+      .....+++.+|.++..+.+|..|-..+....+..       
T Consensus       267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-------  333 (546)
T KOG3783|consen  267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-------  333 (546)
T ss_pred             ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-------
Confidence            334566677778888888888888888772211      2345667888999999999999998888776652       


Q ss_pred             ChhhHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 008016          283 SADLVLPLFSLGSLFI--------KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK  354 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  354 (581)
                      +...+..-+..|.++.        ..|+-++|..+++...+..... +.+.|....                    ..++
T Consensus       334 dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f--------------------~~RK  392 (546)
T KOG3783|consen  334 DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKF--------------------IVRK  392 (546)
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHH--------------------HHHH
Confidence            1111221222223332        2345666666665555544332 122221111                    1111


Q ss_pred             HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHH
Q 008016          355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFV  432 (581)
Q Consensus       355 al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  432 (581)
                      +-+..... ..++.... ..-+..++.++....  ..++..    ++.......--.+..+..-.+..+|.++...|+..
T Consensus       393 verf~~~~-~~~~~~~l-a~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~  466 (546)
T KOG3783|consen  393 VERFVKRG-PLNASILL-ASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSE  466 (546)
T ss_pred             HHHHhccc-cccccccc-cchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHH
Confidence            11111110 00000000 001122333332221  122222    22111111111234445556677899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 008016          433 EAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR-DKEAEKLVLEALYIR  487 (581)
Q Consensus       433 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~  487 (581)
                      .|..+|...++- ......+..-...+++.+|..+..+|. ..++..++.+|-+..
T Consensus       467 ~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  467 VAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            999999988865 222233444566789999999999998 999999999997643

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.33  E-value=0.089  Score=35.89  Aligned_cols=71  Identities=8%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ...-+..+..++...+.++|+..+.++++.       ..+.++...++-.+..+|...|+|.+.+.+..+-+.+...+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k-------~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEK-------ITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhh-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345677888888999999999999999886       44477788888999999999999999999887766666543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.32  E-value=1.1  Score=44.11  Aligned_cols=149  Identities=22%  Similarity=0.200  Sum_probs=86.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          292 SLGSLFIKEGKAVDAESVFSRI------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      .+|.++...|++.+|.++|.+.      ++++.          -.-+...+.-+...|..++-..+.++-.+.....   
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---  703 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---  703 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence            4678888899999999988753      33321          1224456667777788777777776655554432   


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHH------HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELL------EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                        ..|.      .-|.++...|+.++|+.+.      +-++++..+.    +......+..++..+.....+.-|.+.|+
T Consensus       704 --kePk------aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~  771 (1081)
T KOG1538|consen  704 --KEPK------AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFL  771 (1081)
T ss_pred             --CCcH------HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHH
Confidence              1221      2356777888888888754      3455554443    12222344445555555556666666655


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      +.-++                ..+..++...+++.+|..+.+
T Consensus       772 k~gD~----------------ksiVqlHve~~~W~eAFalAe  797 (1081)
T KOG1538|consen  772 KMGDL----------------KSLVQLHVETQRWDEAFALAE  797 (1081)
T ss_pred             HhccH----------------HHHhhheeecccchHhHhhhh
Confidence            54221                223344555666666655444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.19  E-value=0.017  Score=32.65  Aligned_cols=30  Identities=33%  Similarity=0.373  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                      .++..+|.+|...|++++|..+|++++++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            568899999999999999999999999974

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.08  E-value=1.3  Score=41.78  Aligned_cols=139  Identities=13%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE--EVAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ..+...|-.+-+.+++++|...|.+..+....       .|.  ..+++. .+.++|+ .++.+.-...+....+..   
T Consensus         7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~-------~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~---   75 (549)
T PF07079_consen    7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKES-------SPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF---   75 (549)
T ss_pred             HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhc-------chHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc---
Confidence            34677888889999999999999998765322       221  112332 3333443 344444444433333222   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHHHhcCCHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----------LLVTSLLGMAKVLGSIGRAKKAV  265 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~  265 (581)
                       +..+   ....-.|...++.+++.+|++.+..--+....   ...+          .....-...+.++...|++.++.
T Consensus        76 -~~s~---~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~---~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR  148 (549)
T PF07079_consen   76 -GKSA---YLPLFKALVAYKQKEYRKALQALSVWKEQIKG---TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR  148 (549)
T ss_pred             -CCch---HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcc---cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH
Confidence             2222   23345677888999999999877654332111   1111          11222344678889999999999


Q ss_pred             HHHHHHHHHH
Q 008016          266 EIYHRVITIL  275 (581)
Q Consensus       266 ~~~~~al~~~  275 (581)
                      ..+++.+...
T Consensus       149 ~iLn~i~~~l  158 (549)
T PF07079_consen  149 AILNRIIERL  158 (549)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=1.6  Score=40.81  Aligned_cols=185  Identities=14%  Similarity=0.043  Sum_probs=127.8

Q ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      .+-...+.....-+.++....++..|..++.+..-....    +........++..++.++.+-+..-.+..+.-.++..
T Consensus       267 ~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k----~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~  342 (482)
T KOG4322|consen  267 GDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK----GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK  342 (482)
T ss_pred             chHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence            333445666777899999999999999999987765443    3344555667778888888888888888887777766


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHHHHHcCChHHHH
Q 008016          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-----ISFPMLHLGITLYHLNRDKEAE  477 (581)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~  477 (581)
                      ..+.  ..+...+..-..++..+...|..+.|...+..++....-..+-++..     .+.++..-+..+ ...+.+.+.
T Consensus       343 ~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~  419 (482)
T KOG4322|consen  343 RSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP  419 (482)
T ss_pred             HHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence            6554  22223344556788888899999999999999988665432222111     111111111112 556778888


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      .+++++-.+..+.  .-|..+.++.+-++..|...|+.+
T Consensus       420 ~~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~  456 (482)
T KOG4322|consen  420 RYLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSP  456 (482)
T ss_pred             HHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCch
Confidence            8888888887765  456677888999999999999876

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.62  E-value=6.1  Score=45.83  Aligned_cols=110  Identities=13%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  532 (581)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~  532 (581)
                      ...++.+|...|++....|+++.|..++-+|.+..          ...+....|..+...|+.. .|+..+++.++....
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~-~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDEL-NALSVLQEILSKNFP 1734 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHH-HHHHHHHHHHHhhcc
Confidence            45678899999999999999999999988886632          2356788899999999999 999999999865433


Q ss_pred             hcCCC---CH------HHHHHHHHHHHHHHHcCCh--hhhHHHHHHHHHHHH
Q 008016          533 EFGSE---SE------EVMLTLKKVVSYLDKLGRK--EEKFPLKKRLSNLRM  573 (581)
Q Consensus       533 ~~~~~---~~------~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~l~~  573 (581)
                      .....   .|      ....+...++......|+.  ++-++.|..+.++.+
T Consensus      1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence            21111   01      1122444555555666663  234566777776655

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=2.7  Score=41.62  Aligned_cols=103  Identities=13%  Similarity=0.133  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +.+.|...++..+|..+++.|...+.....    ...+..-+.....++.||....+.+.|.++++++.+..       |
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------~  425 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------R  425 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccc----hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------c
Confidence            667788889999999999999998875432    12234457778899999999999999999999987654       3


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (581)
                      ...-....+..+....|.-++|+...........
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~  459 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED  459 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence            3333345556666778899999998888776543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.44  E-value=0.013  Score=32.79  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      ++++.+|.++.+.|++++|++.|+++++..|
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            3678899999999999999999999987654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.24  E-value=0.53  Score=32.28  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      .-|.-++...+.++|+..++++++..     .+.++...++-.+..+|...|++.+.+.+..+-+++.++.
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el   76 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL   76 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33444567888999999999999874     3466788889999999999999999999988888877654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.21  E-value=2.9  Score=39.62  Aligned_cols=151  Identities=15%  Similarity=0.132  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---------------------CCChhhHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG---------------------TESADLVLPLFSLGSLFIK  299 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------~~~~~~~~~~~~la~~~~~  299 (581)
                      +|..+.++..++.++..+|+...|.++.++|+-..+....                     ..+.....++........+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            4556788999999999999999999999999877663321                     1123344566677888899


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016          300 EGKAVDAESVFSRILKIYTKVYGEN-DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (581)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (581)
                      .|-+..|.++.+-.+.+     ++. +|.  -+...+-....+.++++--+++++.......+     ..........+.
T Consensus       116 RG~~rTAlE~~KlLlsL-----dp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-----~~~~~lPn~a~S  183 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSL-----DPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-----NWLSLLPNFAFS  183 (360)
T ss_pred             cCcHHHHHHHHHHHHhc-----CCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-----hhhhhCccHHHH
Confidence            99999999999888775     233 333  23334444556778887777777655442110     000112233466


Q ss_pred             HHHHHHHcCCh---------------HHHHHHHHHHHHHH
Q 008016          379 LAELLHIVGRG---------------QEGRELLEECLLIT  403 (581)
Q Consensus       379 la~~~~~~g~~---------------~~A~~~~~~al~~~  403 (581)
                      .+.++...++.               ++|...+.+|+..+
T Consensus       184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            77788888887               89999999998875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.15  E-value=1.4  Score=35.66  Aligned_cols=124  Identities=11%  Similarity=-0.089  Sum_probs=85.6

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHH--HHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGE--ALDC  504 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~  504 (581)
                      ..++.++|+.-|...-+.    .-...|  ..+....+.+..+.|+...|...|.++-...      ..|....  +...
T Consensus        70 ~~~k~d~Alaaf~~lekt----g~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlr  137 (221)
T COG4649          70 QENKTDDALAAFTDLEKT----GYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLR  137 (221)
T ss_pred             HcCCchHHHHHHHHHHhc----CCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHH
Confidence            446778888777665431    111222  3356788999999999999999999875421      2343332  2233


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016          505 LVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       505 la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                      -+.++...|.++        ......+.+-++.+|-...+...||..-.+.|++.+|..+|.+...
T Consensus       138 aa~lLvD~gsy~--------dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYD--------DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHH--------HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            455566667655        4444455556677888889999999999999999999999998764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.12  E-value=0.04  Score=30.74  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          459 PMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      +++.+|.++...|++++|...|+++++.+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            57889999999999999999999998754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=2.3  Score=37.93  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=79.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 008016          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV  245 (581)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  245 (581)
                      ..-+......|++.+|...+..+....       +....+...++.+|...|+.+.|...+...-.-..       ....
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-------~~~~  203 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-------DKAA  203 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-------hhHH
Confidence            344556677899999999999987765       33355678899999999999999888765322110       0111


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (581)
                      ..+......+.......+....-++ +.        .+|+....-..++..+...|+.+.|.+.+-..+.
T Consensus       204 ~~l~a~i~ll~qaa~~~~~~~l~~~-~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         204 HGLQAQIELLEQAAATPEIQDLQRR-LA--------ADPDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHH-HH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1111111222222222222222111 11        2566778888999999999999999887766554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.07  E-value=0.091  Score=30.34  Aligned_cols=36  Identities=19%  Similarity=-0.065  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      .++..||.+-...++|++|..-|++++++.++.+.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~   37 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP   37 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence            367889999999999999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.93  E-value=3.2  Score=38.73  Aligned_cols=149  Identities=13%  Similarity=0.066  Sum_probs=93.0

Q ss_pred             CChHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRSKN------------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (581)
                      .+|....++..+.......-.            .+.-+.+|++|++.        +|.....+..+-....+..+.++..
T Consensus        14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen   14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            356666666666554433322            34445566666653        4555555566666666777777777


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHH
Q 008016          478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE----------SEEVMLTLKK  547 (581)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~  547 (581)
                      +-+++++...     ++.+.....+...-......-... .....|.+++..........          ....+.++..
T Consensus        86 ~~we~~l~~~-----~~~~~LW~~yL~~~q~~~~~f~v~-~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   86 KKWEELLFKN-----PGSPELWREYLDFRQSNFASFTVS-DVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHHHC-----CCChHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            7788877642     344444333333322222333455 78888888887665554332          2345667778


Q ss_pred             HHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          548 VVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       548 la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                      +.......|-.+.|...++-.+++.
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888999999999999999888774

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.81  E-value=0.069  Score=50.32  Aligned_cols=93  Identities=15%  Similarity=0.055  Sum_probs=80.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      .-+.....-+.++.|+..|.+++++        +|..+..+.+-+..+.+.+++..|+.-+.++++.        +|...
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~   72 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI   72 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence            3466677889999999999999998        6667777888889999999999999999999975        58888


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      .+|...|......+++.+|...|+....+
T Consensus        73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   73 KAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             heeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999887765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.75  E-value=0.11  Score=29.94  Aligned_cols=35  Identities=17%  Similarity=0.073  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG  450 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (581)
                      .++..||.+-...++|++|+.-|++++++.++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~   36 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP   36 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            36788999999999999999999999999887654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.62  E-value=4.2  Score=38.56  Aligned_cols=153  Identities=13%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------ccCCCCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------------NYMSLDDSIMENMRIDLAELLHI  385 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~  385 (581)
                      +|..+.++..++.++..+|+...|.+++++|+-.++..                   .+..+.+.....++......+.+
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~  115 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR  115 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence            67778899999999999999999999999998776632                   01112234445566777888899


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          386 VGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      .|-+..|.++.+-.+.+.     +. +|  ..++..+-....+.++++--+++++.......+..-..-|.   ..+..+
T Consensus       116 RG~~rTAlE~~KlLlsLd-----p~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~a  185 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLD-----PDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIA  185 (360)
T ss_pred             cCcHHHHHHHHHHHHhcC-----CCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHH
Confidence            999999999998877762     22 33  23444455556677888777777776544211000001222   345667


Q ss_pred             HHHHHcCCh---------------HHHHHHHHHHHHHH
Q 008016          465 ITLYHLNRD---------------KEAEKLVLEALYIR  487 (581)
Q Consensus       465 ~~~~~~g~~---------------~~A~~~~~~a~~~~  487 (581)
                      .++...++-               ++|...+.+|+..+
T Consensus       186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f  223 (360)
T PF04910_consen  186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF  223 (360)
T ss_pred             HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence            777777777               89999999998765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=94.59  E-value=0.053  Score=51.05  Aligned_cols=96  Identities=17%  Similarity=0.109  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+-..+...+..++|+.|+.+|.+++++          +|..+..+.+.+.++...+++..|+.-+.++++..       
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~l----------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------   68 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIEL----------DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------   68 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhc----------CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------
Confidence            3556778889999999999999999988          88888888888899999999999999888876653       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      |....++..-|.+....+++.+|...|+....+
T Consensus        69 P~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l  101 (476)
T KOG0376|consen   69 PTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL  101 (476)
T ss_pred             chhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence            788888888999999999999999999887765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=94.54  E-value=5  Score=39.07  Aligned_cols=101  Identities=8%  Similarity=-0.096  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+..+.+.+-.. .+++..+.|++.+..          -|..+.++......-+...+|+..+.+|.+++...-.     
T Consensus        22 sw~~lire~qt~-~~~~~R~~YEq~~~~----------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-----   85 (656)
T KOG1914|consen   22 SWSQLIREAQTQ-PIDKVRETYEQLVNV----------FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-----   85 (656)
T ss_pred             HHHHHHHHHccC-CHHHHHHHHHHHhcc----------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-----
Confidence            344444444333 889999999998765          5666777777788888899999999999987654311     


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (581)
                      -++..  ..+..+-...|+...+....-+|.+......+
T Consensus        86 lDLW~--lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig  122 (656)
T KOG1914|consen   86 LDLWK--LYLSYVRETKGKLFGYREKMVQAYDFALEKIG  122 (656)
T ss_pred             HhHHH--HHHHHHHHHccCcchHHHHHHHHHHHHHHHhc
Confidence            12221  22334444566666666666666665544433

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.52  E-value=3.9  Score=37.73  Aligned_cols=167  Identities=17%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      ....+++..|+..+..+-..            ........++..|..    ..+..+|..++..+..         ....
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~------------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~---------~g~~  109 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL------------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA---------DGLA  109 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc------------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh---------cccH
Confidence            34566777777777776531            112556667777655    3467788888885322         2233


Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHH
Q 008016          204 AILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-------RAKKAVEIYHRVI  272 (581)
Q Consensus       204 ~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al  272 (581)
                      ...+.+|.+|..    ..+..+|..+|+++...       .++.-..+...++.+|..-.       +...|...|.++-
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa  182 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAA  182 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHH
Confidence            456778988876    45899999999999874       22211344677777777642       2236777777766


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC
Q 008016          273 TILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (581)
                      ...          ...+...+|.+|..    ..++.+|..+|.++-+.       .+   ......++ ++...|
T Consensus       183 ~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         183 ELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             Hhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            552          35677888888855    44889999999998774       12   56677777 666655

>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=4.4  Score=38.14  Aligned_cols=197  Identities=15%  Similarity=0.033  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      +-....+.....+.++....++..|..++.+..-....  +.+......++..++.++.+.+....+..+.-.++....+
T Consensus       268 d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~se  345 (482)
T KOG4322|consen  268 DYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSE  345 (482)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence            44445666777899999999999999988887654322  2334456677888888888888888888877777766554


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC---hHHHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD---SIMENMRIDLAELLHIVGRGQEGRELL  396 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~  396 (581)
                      .  ..+-..+.+-..++....-.|..+.|...+..++....-..+.....   ...+.++..-+..+ ...+.+.+..++
T Consensus       346 y--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L  422 (482)
T KOG4322|consen  346 Y--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYL  422 (482)
T ss_pred             h--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHH
Confidence            4  22233445556788888899999999999999988765321111110   01111111111112 456678888888


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHH
Q 008016          397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE---AERLLRICLD  443 (581)
Q Consensus       397 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~  443 (581)
                      +++-....+.  ..+.....+.+.++..|...|+.++   +...|+++..
T Consensus       423 ~~A~~~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~  470 (482)
T KOG4322|consen  423 DLAQSIFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR  470 (482)
T ss_pred             HHHHHHHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence            8888887776  4566677888889999999998654   4455555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.45  E-value=0.82  Score=36.71  Aligned_cols=91  Identities=15%  Similarity=0.021  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (581)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (581)
                      +....+..++.....-...++.+++..++...-.+          .|..+..-..-|..+...|++.+|+.+++.+... 
T Consensus         5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-   73 (160)
T PF09613_consen    5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-   73 (160)
T ss_pred             CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence            33455667888888889999999999888765544          7888888888999999999999999999986433 


Q ss_pred             hhcCCCcchHHHHHHHHHHHHHhccCHH
Q 008016          193 DSLKDDEPLLDAILLHMGSMYSTLENYE  220 (581)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~  220 (581)
                            .+....+--.++.|+...|+.+
T Consensus        74 ------~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   74 ------APGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             ------CCCChHHHHHHHHHHHHcCChH
Confidence                  2333333445677777777753

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.35  E-value=5.5  Score=38.80  Aligned_cols=274  Identities=18%  Similarity=0.087  Sum_probs=150.4

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      .....+...+..+.  ....+++...+....++    +.....-+..+...|+.+.|+..++..++...      ..-..
T Consensus       236 ~~~~~~~~~p~~d~--~~~~~~Ll~~~~~~p~g----a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~------kQ~~~  303 (546)
T KOG3783|consen  236 QFISFVLGTPNPDG--EECEKALKKYRKRYPKG----ALWLLMEARILSIKGNSEAAIDMESLSIPIRM------KQVKS  303 (546)
T ss_pred             HHHHHHcCCCCccH--HHHHHHhHHHHHhCCCC----ccHHHHHHHHHHHcccHHHHHHHHHhcccHHH------HHHHH
Confidence            33444555565555  44445555444443333    34455667778888888888888888776211      12234


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHH--------HCCCHHHHHHHHHHHHHH
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLA-HAKC--------ANGNAEEAVELYKKALRV  358 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la-~~~~--------~~g~~~~A~~~~~~al~~  358 (581)
                      ..++.+|.++..+.+|..|-..+....+...        ..--.|..++ -++.        ..|+-++|..+++.....
T Consensus       304 l~~fE~aw~~v~~~~~~~aad~~~~L~desd--------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l  375 (546)
T KOG3783|consen  304 LMVFERAWLSVGQHQYSRAADSFDLLRDESD--------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL  375 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
Confidence            5677889999999999999998888766421        1112222333 2222        244667777777766666


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc--cCHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS--KNFVEAER  436 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~  436 (581)
                      ....   +.+.|.-..+ ...+.-+...+. -.+..             .-.+     .+..++.++..-  ...++.. 
T Consensus       376 ~~~a---~K~~P~E~f~-~RKverf~~~~~-~~~~~-------------~la~-----P~~El~Y~Wngf~~~s~~~l~-  431 (546)
T KOG3783|consen  376 LANA---GKNLPLEKFI-VRKVERFVKRGP-LNASI-------------LLAS-----PYYELAYFWNGFSRMSKNELE-  431 (546)
T ss_pred             HHhc---cccCchhHHH-HHHHHHHhcccc-ccccc-------------cccc-----hHHHHHHHHhhcccCChhhHH-
Confidence            5542   1222221111 112222222211 00000             0001     122222222221  1222222 


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC-C
Q 008016          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE-D  515 (581)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~  515 (581)
                         ++........-.+..+..--+.-+|.++...|+...|..+|...++. +.....++.-.+.+++.+|.++...|. .
T Consensus       432 ---k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~  507 (546)
T KOG3783|consen  432 ---KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGL  507 (546)
T ss_pred             ---HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccCh
Confidence               22111111111122223334566799999999999999999988865 333344555667889999999999998 6


Q ss_pred             hHHHHHHHHHHHHHH
Q 008016          516 DTKLLELLKRVLRIQ  530 (581)
Q Consensus       516 ~~~A~~~~~~a~~~~  530 (581)
                      . ++..++.+|.+..
T Consensus       508 ~-e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  508 K-EARALLLKAREYA  521 (546)
T ss_pred             H-HHHHHHHHHHhhc
Confidence            6 9999999997743

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.14  E-value=4.7  Score=37.18  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=108.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----GKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      ....+++..|...+..+-..       ..   ......++.+|...    .+..+|..+|..+.+          .....
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~-------~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~  110 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL-------GD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAE  110 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc-------CC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHH
Confidence            33566777888777776552       11   25566677777653    457778888885543          23456


Q ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHH
Q 008016          331 AMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------RGQEGRELLEEC  399 (581)
Q Consensus       331 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~a  399 (581)
                      +...||.+|..    ..+..+|..+|.++.+.-       ....  ......++..|..-+       +...|...|.++
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g-------~~~a--~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a  181 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG-------NVEA--ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA  181 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC-------ChhH--HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence            67789998887    448999999999998751       1111  223466777776542       223577777766


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016          400 LLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (581)
                      -...          ...+...+|.+|..    ..++.+|..+|.++.+.       .+   ......++ ++...|
T Consensus       182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~-~~~~~g  236 (292)
T COG0790         182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHH-HHHhcC
Confidence            5542          33467778877755    34899999999999873       22   45677777 666655

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.10  E-value=0.86  Score=36.62  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=65.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +......+..+...-...++.+++..++..+.-+.       |.....-..-|+++...|++.+|+..++.+..      
T Consensus         6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR-------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------   72 (160)
T PF09613_consen    6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLR-------PEFPELDLFDGWLHIVRGDWDDALRLLRELEE------   72 (160)
T ss_pred             cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence            44555667777777788889999999988876654       55556667789999999999999999998654      


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAK  262 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~  262 (581)
                        ..+....+--.++.++...|+..
T Consensus        73 --~~~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   73 --RAPGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             --cCCCChHHHHHHHHHHHHcCChH
Confidence              22333444455677777777653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.06  E-value=0.071  Score=33.62  Aligned_cols=37  Identities=19%  Similarity=0.024  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  579 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~  579 (581)
                      +.++.+|..+.+.|++++|..+.+.++++.|...+..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            4678899999999999999999999999998877754

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.04  E-value=0.025  Score=50.61  Aligned_cols=90  Identities=20%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (581)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (581)
                      .-....|.+++|++.+..++.+        +|.....+...+.++...++...|+.-+..++++        +++.+..|
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~y  185 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGY  185 (377)
T ss_pred             HHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Cccccccc
Confidence            3345678899999999999887        6778889999999999999999999999999986        56666777


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      -..+.....+|++++|...+..+.++
T Consensus       186 kfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  186 KFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             chhhHHHHHhhchHHHHHHHHHHHhc
Confidence            77888889999999999999999886

>PRK14707 hypothetical protein; Provisional

Probab=93.97  E-value=15  Score=42.44  Aligned_cols=301  Identities=11%  Similarity=0.022  Sum_probs=149.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHH--HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHH
Q 008016          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAIL--LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (581)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (581)
                      .+++++-..+++..+..+-..+..+...+.. ++.....+  ..++.++...+++.+...+-.-++.+...+........
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~-e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrq  914 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLAD-EPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRK  914 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhc-ChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHh
Confidence            3455566666666555555555444444322 23332222  33566667777777777666666666665532222222


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ...-..+++++....+|.++-.+-.-+..+......  .+.....  -..+++++-..+++.+...+-.-+..+......
T Consensus       915 al~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~--d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~  992 (2710)
T PRK14707        915 ALSAHRVATALNALSKWPDIPVCATAASALAERLSD--DPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVD  992 (2710)
T ss_pred             hccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc--ChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhc
Confidence            233445677777777777755544444444444321  2222222  234667777777777766655555555444311


Q ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-MENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                      +........-..++.++....++.++-.+-.-+..+....   ..+... -..--..++.++....+|.+.-.+-.-+..
T Consensus       993 ~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL---a~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~a 1069 (2710)
T PRK14707        993 EPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL---SNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASA 1069 (2710)
T ss_pred             cHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh---ccCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHH
Confidence            1111111222345666666666655444444444444332   111111 001114566677777777665554444444


Q ss_pred             HHHHhcCCCChHH--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016          402 ITEKYKGKEHPSF--VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       402 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (581)
                      +.....  +.+..  ...-..++.++....++.+.-.+-+.++.+........++........++.++-...++..
T Consensus      1070 LA~rL~--~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~ 1143 (2710)
T PRK14707       1070 LAERLS--DDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPG 1143 (2710)
T ss_pred             HHHHhh--ccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCC
Confidence            443331  11211  1122345556666666666666666666666555443333333334455555555555543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.90  E-value=4.6  Score=36.27  Aligned_cols=205  Identities=15%  Similarity=0.081  Sum_probs=108.3

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhcCCCChHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKEHPSF  414 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~  414 (581)
                      +..+.+.|++..|.++..-.++.+.+.  ..+.+.   ....+++.+....+.-+ +-.++.+++++.. +. +......
T Consensus        17 a~~ll~~~Q~~sg~DL~~lliev~~~~--~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gd   89 (260)
T PF04190_consen   17 ALILLKHGQYGSGADLALLLIEVYEKS--EDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGD   89 (260)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHHHHT--T---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--
T ss_pred             HHHHHHCCCcchHHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCC
Confidence            444566677777777777777766653  111111   12256666666665433 4556777788777 32 3444455


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          415 VTHLLNLAASYSRSKNFVEAERLLRIC-----------LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                      ...+..+|..|.+.|++.+|+.+|-..           +......  ....+..........-|...|+...|...+...
T Consensus        90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~--~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK--GYPSEADLFIARAVLQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH--TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            678888999999999999999887321           1111111  111122222333445567789999999988877


Q ss_pred             HHHHHHH----------cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 008016          484 LYIREIA----------FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLD  553 (581)
Q Consensus       484 ~~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  553 (581)
                      .+.....          ..++.|. ..-..-|-.+. ..+     +...|....+.++..+. .+|.....+..+|..|.
T Consensus       168 ~~~~~~~~p~~~~~~~~~~~~~Pl-lnF~~lLl~t~-e~~-----~~~~F~~L~~~Y~~~L~-rd~~~~~~L~~IG~~yF  239 (260)
T PF04190_consen  168 TSKLIESHPKLENSDIEYPPSYPL-LNFLQLLLLTC-ERD-----NLPLFKKLCEKYKPSLK-RDPSFKEYLDKIGQLYF  239 (260)
T ss_dssp             HHHHHHH---EEEEEEEEESS-HH-HHHHHHHHHHH-HHT------HHHHHHHHHHTHH----HHHHTHHHHHHHHHHHH
T ss_pred             HHHHhccCcchhccccCCCCCCch-HHHHHHHHHHH-hcC-----cHHHHHHHHHHhCcccc-ccHHHHHHHHHHHHHHC
Confidence            7653322          1112221 12222222222 222     23467776666665543 24677788899999998


Q ss_pred             HcCC
Q 008016          554 KLGR  557 (581)
Q Consensus       554 ~~g~  557 (581)
                      ....
T Consensus       240 gi~~  243 (260)
T PF04190_consen  240 GIQP  243 (260)
T ss_dssp             ---S
T ss_pred             CCCC
Confidence            7543

; PDB: 3LKU_E 2WPV_G.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.89  E-value=0.038  Score=49.50  Aligned_cols=100  Identities=14%  Similarity=0.031  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      ......-..+...+..|.+++|++.|..++++          +|..+..+...+.++..+++...|+.-+..++.+.   
T Consensus       112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein---  178 (377)
T KOG1308|consen  112 DQANDKKVQASEALNDGEFDTAIELFTSAIEL----------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN---  178 (377)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhccccccccc----------CCchhhhcccccceeeeccCCchhhhhhhhhhccC---
Confidence            44445666777889999999999999999887          88899999999999999999999999999887764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                          ++.+.-+-..|.....+|++++|...+..+.++
T Consensus       179 ----~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl  211 (377)
T KOG1308|consen  179 ----PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL  211 (377)
T ss_pred             ----cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence                444445566777888899999999999998875

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=93.81  E-value=4.7  Score=36.00  Aligned_cols=187  Identities=11%  Similarity=0.025  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC---CC-------HHHHHHHHHHHHHHHhcC--------------CH
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TS-------ILLVTSLLGMAKVLGSIG--------------RA  261 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~-------~~~~~~~~~la~~~~~~g--------------~~  261 (581)
                      .+.+..+++..|+..+|+..+++=+.......++   ..       ...+.-+..+|.......              -|
T Consensus        13 ~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy   92 (247)
T PF11817_consen   13 AFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYY   92 (247)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHH
Confidence            3566788899999999999999888887776554   11       112222334444443322              12


Q ss_pred             HHHHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          262 KKAVEIYHRVITILELNRG-TE-------------------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~-~~-------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      ..|-.+...-.+..+.... ++                   .+.....+................++++.+|++.+++. 
T Consensus        93 ~~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-  171 (247)
T PF11817_consen   93 QIAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-  171 (247)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-
Confidence            2333333222222222210 01                   00000011111111112233445678888888887765 


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                       ............+|..|...|++++|..+++.+...+++    ..-......++..+..++...|+.+..+.+.-+
T Consensus       172 -~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~----egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  172 -GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR----EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             -ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence             223345566778999999999999999999999877765    234555666778888899999998887766443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=93.75  E-value=7.2  Score=38.01  Aligned_cols=178  Identities=13%  Similarity=-0.071  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHHH
Q 008016          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF-------VEAERLLRICLDIMTK  447 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~~  447 (581)
                      ....||..+...|+|+-|...|+.+..-+...  ......+.+....|.+....+..       ++...+++.|...+.+
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~  287 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK  287 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence            34679999999999999999999887755321  11223444555555555555533       4777888888887776


Q ss_pred             hcCC---CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh---HHHHHHHHHHHH--HHcCCChHHH
Q 008016          448 TVGP---DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP---VGEALDCLVSIQ--TRLGEDDTKL  519 (581)
Q Consensus       448 ~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~---~~~~~~~la~~~--~~~g~~~~~A  519 (581)
                      ...+   .......+....+.++...|.+.+|...+-+.....-    .+...   .+..+..+|.++  ....... . 
T Consensus       288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~-~-  361 (414)
T PF12739_consen  288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPS-P-  361 (414)
T ss_pred             hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCC-c-
Confidence            3211   1224455667778888889999888877776655321    01111   344455566666  3321111 0 


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          520 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       520 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                        ...            ........+..-|.-|.++|+...|..+|.+++.+.+.
T Consensus       362 --~~~------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  362 --GLT------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             --cch------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence              000            01222333445578899999999999999999988754

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.64  E-value=3.1  Score=34.98  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=50.8

Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (581)
                      ...-+.+.....||..|. ..+.++|+.++.++++...    +++......+..|+.++..+|+++.|-
T Consensus       135 ~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  135 TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            334456778888998887 6789999999999999853    333445678889999999999999884

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=93.36  E-value=2.5  Score=31.48  Aligned_cols=101  Identities=11%  Similarity=0.100  Sum_probs=58.1

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHhhcCCCc
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI----GDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+..++..|++-+|+++.+..+...       ..+......+..-|.++..+    .+.+-=..++.-+++.+.....-.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h-------~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls   74 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRH-------GEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS   74 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHc-------cCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence            4677899999999999999987652       11222234555556666543    333333334444444333323333


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (581)
                      |..+..++.+|.-+...-.|+++..-.++++.
T Consensus        75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            55566677777665555555555555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.31  E-value=3.7  Score=33.33  Aligned_cols=133  Identities=13%  Similarity=0.067  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      -+..+..+.+.+..++|+.-|...-+.        ....-..-+....+.+....|+...|+..|..+-....     .|
T Consensus        61 ~flaAL~lA~~~k~d~Alaaf~~lekt--------g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-----~P  127 (221)
T COG4649          61 AFLAALKLAQENKTDDALAAFTDLEKT--------GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-----IP  127 (221)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-----Cc
Confidence            344566677888899998888765432        22233344567788899999999999999998655431     12


Q ss_pred             hHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          201 LLD--AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       201 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                      ...  .+-..-+.++...|-|+.-...       .+.+.++.+|....+.-.||..-++.|++.+|...|.+...
T Consensus       128 ~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         128 QIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             chhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            221  2234456677788887765443       33334567788888888999999999999999999988765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.26  E-value=0.34  Score=37.13  Aligned_cols=76  Identities=12%  Similarity=-0.003  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG-SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ...+..++++++.+..+.+     -.++.+.+.+.++. .......+.++.|+..+++.|+|++++.+.+..++..++..
T Consensus        31 s~~s~f~lAwaLV~S~~~~-----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTE-----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchH-----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3466788999988877765     34555666666554 33345567889999999999999999999999888876665


Q ss_pred             hh
Q 008016          577 QK  578 (581)
Q Consensus       577 ~~  578 (581)
                      |.
T Consensus       106 Qa  107 (149)
T KOG3364|consen  106 QA  107 (149)
T ss_pred             HH
Confidence            54

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.25  E-value=4.5  Score=34.05  Aligned_cols=80  Identities=20%  Similarity=0.098  Sum_probs=56.0

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  506 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  506 (581)
                      .+-.-++|...|-++-       +....+.+.....||..|. ..+.++|+.++-+++++..    +++.-..+++..|+
T Consensus       118 sr~~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLa  185 (203)
T PF11207_consen  118 SRFGDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLA  185 (203)
T ss_pred             hccCcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHH
Confidence            3434456666555442       2334456777888886665 7788999999999998763    34233457889999


Q ss_pred             HHHHHcCCChHHH
Q 008016          507 SIQTRLGEDDTKL  519 (581)
Q Consensus       507 ~~~~~~g~~~~~A  519 (581)
                      .++..+|+++ .|
T Consensus       186 s~~~~~~~~e-~A  197 (203)
T PF11207_consen  186 SIYQKLKNYE-QA  197 (203)
T ss_pred             HHHHHhcchh-hh
Confidence            9999999988 55

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=93.23  E-value=6.1  Score=35.53  Aligned_cols=215  Identities=8%  Similarity=-0.013  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Q 008016          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLK-FVQSLLDMMSGI  191 (581)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~  191 (581)
                      .+.+.+..+..-+..+.+.|++.-|.++..-.++.+...    . .+........++.+....+.-+ +-..+..+++++
T Consensus         5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~----~-~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~W   79 (260)
T PF04190_consen    5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKS----E-DPVDEESIARLIELISLFPPEEPERKKFIKAAIKW   79 (260)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT----T----SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            445566678888899999999999999988888776662    1 2223334456676666665443 455667778888


Q ss_pred             HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016          192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVI-----------NVLESRYGKTSILLVTSLLGMAKVLGSIGR  260 (581)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  260 (581)
                      . ..+.........+..+|..+++.|++.+|..++-..-           ..+... +. +.+...........|...++
T Consensus        80 S-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~-~~e~dlfi~RaVL~yL~l~n  156 (260)
T PF04190_consen   80 S-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY-PSEADLFIARAVLQYLCLGN  156 (260)
T ss_dssp             H-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS-S--HHHHHHHHHHHHHHTTB
T ss_pred             H-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC-CcchhHHHHHHHHHHHHhcC
Confidence            7 4344444556678899999999999999999874321           111111 11 11122222233345667799


Q ss_pred             HHHHHHHHHHHHHHHHHh----------cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          261 AKKAVEIYHRVITILELN----------RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      ...|...+..-.+.....          ...+.|.. .....|-.+ +..+    +...|....+.++..+. .+|....
T Consensus       157 ~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~Pll-nF~~lLl~t-~e~~----~~~~F~~L~~~Y~~~L~-rd~~~~~  229 (260)
T PF04190_consen  157 LRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLL-NFLQLLLLT-CERD----NLPLFKKLCEKYKPSLK-RDPSFKE  229 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHH-HHHHHHHHH-HHHT-----HHHHHHHHHHTHH----HHHHTHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchhccccCCCCCCchH-HHHHHHHHH-HhcC----cHHHHHHHHHHhCcccc-ccHHHHH
Confidence            999998887766652221          01122322 111112222 2233    23566666665554322 2345566


Q ss_pred             HHHHHHHHHHHC
Q 008016          331 AMCSLAHAKCAN  342 (581)
Q Consensus       331 ~~~~la~~~~~~  342 (581)
                      .+..+|..|+..
T Consensus       230 ~L~~IG~~yFgi  241 (260)
T PF04190_consen  230 YLDKIGQLYFGI  241 (260)
T ss_dssp             HHHHHHHHHH--
T ss_pred             HHHHHHHHHCCC
Confidence            677777777754

; PDB: 3LKU_E 2WPV_G.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=5.7  Score=35.94  Aligned_cols=128  Identities=13%  Similarity=0.064  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                      +-+.+.++-.++..|  ......++.+.|..|++.|+-+.|.+.+.+..+-.-..  +...+.......+|..|....  
T Consensus        85 ~eld~~iedaeenlG--E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~--  158 (393)
T KOG0687|consen   85 KELDEKIEDAEENLG--ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHD--  158 (393)
T ss_pred             HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHH--
Confidence            334444444444322  34567889999999999999999999998876643332  223345566667777775543  


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                       --.+..+++-.+.++    |.|..........-|.......++.+|-.+|-.++..+.
T Consensus       159 -lV~~~iekak~liE~----GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt  212 (393)
T KOG0687|consen  159 -LVTESIEKAKSLIEE----GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT  212 (393)
T ss_pred             -HHHHHHHHHHHHHHh----CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence             333344444444443    555555444445566667777889999888888776543

>PRK14707 hypothetical protein; Provisional

Probab=93.17  E-value=21  Score=41.47  Aligned_cols=297  Identities=9%  Similarity=0.023  Sum_probs=149.0

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      .++.++...+++..+..+-.-+..+...+...........-..++.++...++|.+...+-.-+..+...+..  ++...
T Consensus       836 ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~--d~~Lr  913 (2710)
T PRK14707        836 HVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD--EPELR  913 (2710)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc--CHHHH
Confidence            4566677777777776666666666554422211111112344667777777887766666666666555432  23322


Q ss_pred             HH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          288 LP--LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV--GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       288 ~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      ..  -..+++++-...++.++-.+-.-+..+.....  .++..  ...-..++.++...+++.+...+-.-+..+.... 
T Consensus       914 qal~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa--~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL-  990 (2710)
T PRK14707        914 KALSAHRVATALNALSKWPDIPVCATAASALAERLS--DDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERL-  990 (2710)
T ss_pred             hhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHhc--cChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHH-
Confidence            22  24567777777777765555444444444442  22222  2223456666777777766555554444444332 


Q ss_pred             cCCCCChHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHH--HHHHHHHHHHHccCHHHHHHHHHH
Q 008016          364 YMSLDDSIM-ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT--HLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       364 ~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                        ..+.... ...-..++.++....+|.++-.+-.-+..+....  ...+....  .-..++.++...+++.+...+-.-
T Consensus       991 --~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rL--a~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~A 1066 (2710)
T PRK14707        991 --VDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARL--SNDPGLCKALSSQGLTTVLNALCKWPEMPVCLAA 1066 (2710)
T ss_pred             --hccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHh--ccCHhhhhhcchHHHHHHHHhhccCCCchhHHHH
Confidence              1111000 0011346667777777766655555555555554  12222222  223456666666666654444443


Q ss_pred             HHHHHHHhcCCCCcchH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016          441 CLDIMTKTVGPDDQSIS--FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  515 (581)
Q Consensus       441 al~~~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  515 (581)
                      +..+......  ++...  ..-..++.++-...++.+.-..-..++.+...+-...++........++.+.....++
T Consensus      1067 a~aLA~rL~~--d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKW 1141 (2710)
T PRK14707       1067 ASALAERLSD--DLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKW 1141 (2710)
T ss_pred             HHHHHHHhhc--cHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcC
Confidence            3333333211  11111  1223566666666777766666666666665553333332222233344444444443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.13  E-value=0.2  Score=48.41  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      ++.-|..+...|+...|+.++..|+....       ........+++.+....|-...|-.++.+++.+.        ..
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~s  674 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SS  674 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------cc
Confidence            45555566678999999999999987532       2234457789999999999999999999999883        22


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      .....+.+|.+|....+.+.|++.|++|++.
T Consensus       675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~  705 (886)
T KOG4507|consen  675 EPLTFLSLGNAYLALKNISGALEAFRQALKL  705 (886)
T ss_pred             CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence            2456778899999999999999999999985

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.99  E-value=7.9  Score=36.20  Aligned_cols=148  Identities=12%  Similarity=0.056  Sum_probs=91.1

Q ss_pred             ChhhHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016          283 SADLVLPLFSLGSLFIKEGK------------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (581)
                      +|....++..+....-..-.            .+.-+.++++|++.        +|.....+..+-....+..+.++..+
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~   86 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAK   86 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            56666667666655443322            23334455555553        33333333334444456667777777


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----------ChHHHHHHHH
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----------HPSFVTHLLN  420 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~  420 (581)
                      -+++++..       .++...+...|...-..-...-.++.....|.+++..........          ......++..
T Consensus        87 ~we~~l~~-------~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r  159 (321)
T PF08424_consen   87 KWEELLFK-------NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLR  159 (321)
T ss_pred             HHHHHHHH-------CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            78887775       344444444443333333344468899999999988776553322          2234566777


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      +.......|..+.|+..++-.+++.
T Consensus       160 ~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  160 LCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHCCchHHHHHHHHHHHHHH
Confidence            8888899999999999999998863

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.83  E-value=1.3  Score=31.92  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=39.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQR  228 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  228 (581)
                      +|.+..+.+.++..+...|++++|++.+-.++........+   .  +-..+-.++...|.-+.-..-|++
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~---~--ar~~ll~~f~~lg~~~plv~~~RR   83 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD---A--ARKRLLDIFELLGPGDPLVSEYRR   83 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC---H--HHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc---H--HHHHHHHHHHHcCCCChHHHHHHH
Confidence            88889999999999999999999999887766654322111   1  123344445555554444444443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.67  E-value=25  Score=41.25  Aligned_cols=111  Identities=12%  Similarity=0.021  Sum_probs=78.4

Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      ......+|...|.+....|+++.|..++-+|.+.          ....+....|..++..|+...|+..+++.++.....
T Consensus      1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence            4567889999999999999999999998888763          133567889999999999999999999998765322


Q ss_pred             -cCCC--Chh------HHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHH
Q 008016          491 -FGKD--SLP------VGEALDCLVSIQTRLGEDDT-KLLELLKRVLRIQE  531 (581)
Q Consensus       491 -~~~~--~~~------~~~~~~~la~~~~~~g~~~~-~A~~~~~~a~~~~~  531 (581)
                       .++.  .|.      ...+...++......|+.+. +-+.+|..+.++..
T Consensus      1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence             1110  111      12345556666667777542 33456777776643

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.61  E-value=6.9  Score=34.54  Aligned_cols=185  Identities=17%  Similarity=0.119  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      +..+|.+....|+|++.+.+.++++...       ......-.+.++.+|-. .|....+...+.......+   +...+
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~   73 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE   73 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence            4568899999999999999999988762       11122233334444422 2333333333332222111   11111


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC-CCChHHHHHHHHHHHHHHHc-----C-----ChHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS-LDDSIMENMRIDLAELLHIV-----G-----RGQEGREL  395 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~  395 (581)
                      ....    +..-|.. .=-++=...+..++.+.....-.. .+.......+-..|..|.-.     |     -.+.|...
T Consensus        74 ~~~~----~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a  148 (236)
T PF00244_consen   74 KQVK----LIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA  148 (236)
T ss_dssp             HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence            1111    1111110 011233444555555554421111 12222222233344444321     1     24789999


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHH
Q 008016          396 LEECLLITEKYKGKEHPSFVTHLLNLAASY-SRSKNFVEAERLLRICLDIMTK  447 (581)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~  447 (581)
                      |++|+.+....+++.+|.......+.+..| ...|+.++|+.+.+++++....
T Consensus       149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            999999999988899998888887777766 4589999999999999886544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.61  E-value=0.13  Score=26.75  Aligned_cols=25  Identities=20%  Similarity=0.100  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKR  567 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~  567 (581)
                      .+...+|.++..+|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            3567899999999999999998764

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00028 TPR Tetratricopeptide repeats

Probab=92.53  E-value=0.093  Score=28.72  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      .++..+|.++...|++++|...+++++++.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3577899999999999999999999987643

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.45  E-value=1.4  Score=27.83  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ..++.+|..+.+.|+|++|..+.+.++++.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            356788999999999999999999999865

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.44  E-value=2.2  Score=38.19  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      ...++..++..+...|+++.++..+++.+..        +|..-..+..+...|...|+...|+..|++.-.....-+|.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi  223 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI  223 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence            4457888999999999999999999998884        67778899999999999999999999999998876666665


Q ss_pred             CChh
Q 008016          494 DSLP  497 (581)
Q Consensus       494 ~~~~  497 (581)
                      +...
T Consensus       224 ~P~~  227 (280)
T COG3629         224 DPAP  227 (280)
T ss_pred             CccH
Confidence            5543

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=92.42  E-value=7.3  Score=34.38  Aligned_cols=184  Identities=11%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      .++.+|+...+.|+|++.+.++++++...         ..-...-.+.++.+|-. .|....+...+.........  ..
T Consensus         3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~---------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~--~~   71 (236)
T PF00244_consen    3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN---------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN--KG   71 (236)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHTS---------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccC---------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc--cc
Confidence            36778888899999999999999988751         22223334445555532 34444444444443332211  11


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhc-----C-----CHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK---TSILLVTSLLGMAKVLGSI-----G-----RAKKAV  265 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~-----g-----~~~~A~  265 (581)
                      .+....    +..-| +..=-++=...+..++.+.....-+   +....+..+...|..|...     |     -.++|.
T Consensus        72 ~~~~~~----~i~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~  146 (236)
T PF00244_consen   72 NEKQVK----LIKDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL  146 (236)
T ss_dssp             THHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             hhHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence            111111    11111 1111123334455555554442211   1122333333344444321     2     247899


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  319 (581)
                      ..|++|+++....+++.+|.......+.+..|+. .|+.++|....+++++....
T Consensus       147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~  201 (236)
T PF00244_consen  147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS  201 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999998888899888877777777644 89999999999988876543

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.41  E-value=7.7  Score=34.63  Aligned_cols=92  Identities=15%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (581)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (581)
                      .....++++.+|.+.++..    ........+...+|.-|...|++++|.++++.+...+++.  .-..-...++..+..
T Consensus       153 hs~~iI~lL~~A~~~f~~~----~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~  226 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKY----GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLE  226 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence            3456688888998888763    2344555666789999999999999999999997776543  334445567788889


Q ss_pred             HHHHccCHHHHHHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~a  441 (581)
                      ++...|+.+..+.+.-+.
T Consensus       227 Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  227 CAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHhCCHHHHHHHHHHH
Confidence            999999988877654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.29  E-value=8.5  Score=34.88  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      ......++.+.|..|++.|+.+.|.+.+.+..+.....  ....+.......+|..|....-   -.+..+++-.+.++.
T Consensus       100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~~l---V~~~iekak~liE~G  174 (393)
T KOG0687|consen  100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDHDL---VTESIEKAKSLIEEG  174 (393)
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccHHH---HHHHHHHHHHHHHhC
Confidence            34456678899999999999999999999877654333  2344556666777877755433   333344444444443


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ...+..+...+|.  |..+....++.+|..+|-.++..+
T Consensus       175 gDWeRrNRlKvY~--Gly~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  175 GDWERRNRLKVYQ--GLYCMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             CChhhhhhHHHHH--HHHHHHHHhHHHHHHHHHHHcccc
Confidence            2222333333333  445566778888888887776544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.14  E-value=2.4  Score=33.56  Aligned_cols=88  Identities=10%  Similarity=-0.065  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (581)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (581)
                      ...+..+++....-...++++++..++...--+          .|..+..-..-|..+...|++.+|+.+++.+..-.  
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL----------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--   74 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL----------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--   74 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--
Confidence            344556777777777799999998877765433          77777777888999999999999999998864432  


Q ss_pred             cCCCcchHHHHHHHHHHHHHhccCH
Q 008016          195 LKDDEPLLDAILLHMGSMYSTLENY  219 (581)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~  219 (581)
                           +.....--.++.|+...|+.
T Consensus        75 -----~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        75 -----GAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             -----CCchHHHHHHHHHHHhcCCh
Confidence                 22222334466677777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF12854 PPR_1: PPR repeat

Probab=92.14  E-value=0.17  Score=28.46  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          542 MLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       542 ~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      ..++..|...|.+.|+.++|.++|+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            567899999999999999999999875

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.29  E-value=2.4  Score=33.48  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (581)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (581)
                      .....+..+...-...++.+++..++..+.-+.       |.....-..-|+++...|++.+|+..+++..+-       
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLr-------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------   73 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLR-------PNLKELDMFDGWLLIARGNYDEAARILRELLSS-------   73 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-------
Confidence            334444455555556889999998888776654       444455567899999999999999999987652       


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRA  261 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~  261 (581)
                       .+......-.++.++...|+.
T Consensus        74 -~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        74 -AGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             -CCCchHHHHHHHHHHHhcCCh
Confidence             111233334456666666664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.18  E-value=11  Score=34.01  Aligned_cols=111  Identities=12%  Similarity=-0.046  Sum_probs=70.4

Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      +......||.+|.+.++|..|...+.-. .........+.......+..++++|...++.. +|..+..++--.....  
T Consensus       102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~v-eae~~inRaSil~a~~--  177 (399)
T KOG1497|consen  102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKV-EAEAYINRASILQAES--  177 (399)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHhhhcc--
Confidence            4456678999999999999988776532 11110001112233456778999999999988 8888877764332221  


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016          536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                      .+..-.......-|+++-..|++-||...|.+...
T Consensus       178 ~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~  212 (399)
T KOG1497|consen  178 SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ  212 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333334457778888888888887776543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.18  E-value=0.35  Score=25.15  Aligned_cols=23  Identities=30%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHH
Q 008016          459 PMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            56789999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00028 TPR Tetratricopeptide repeats

Probab=91.13  E-value=0.3  Score=26.45  Aligned_cols=29  Identities=24%  Similarity=0.515  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      .++..+|.++...|++++|...++++++.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            35778999999999999999999998864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.04  E-value=4.5  Score=29.19  Aligned_cols=33  Identities=18%  Similarity=0.139  Sum_probs=20.3

Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      +|....+.+.+|..+...|++++|++.+-.++.
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~   50 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVR   50 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344556666777777777777777766665554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.02  E-value=17  Score=35.71  Aligned_cols=120  Identities=14%  Similarity=0.144  Sum_probs=69.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q 008016          339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL  418 (581)
Q Consensus       339 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  418 (581)
                      ....|+++++....... ++...      -+   ......++..+.++|-++.|+.+-+.             |+   ..
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~------i~---~~~~~~i~~fL~~~G~~e~AL~~~~D-------------~~---~r  324 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPN------IP---KDQGQSIARFLEKKGYPELALQFVTD-------------PD---HR  324 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG-----------HHHHHHHHHHHHHTT-HHHHHHHSS--------------HH---HH
T ss_pred             HHHcCChhhhhhhhhhh-hhccc------CC---hhHHHHHHHHHHHCCCHHHHHhhcCC-------------hH---HH
Confidence            34568888876666311 11111      11   12246778888999999988876432             21   22


Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016          419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  498 (581)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (581)
                      +   .+..+.|+.+.|.+..++             .+....|..||.....+|+++-|++.|+++-+             
T Consensus       325 F---eLAl~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------------  375 (443)
T PF04053_consen  325 F---ELALQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------------  375 (443)
T ss_dssp             H---HHHHHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------------
T ss_pred             h---HHHHhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------------
Confidence            2   345678998888765432             22334788999999999999999999988733             


Q ss_pred             HHHHHHHHHHHHHcCCCh
Q 008016          499 GEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       499 ~~~~~~la~~~~~~g~~~  516 (581)
                         +..|.-+|.-.|+.+
T Consensus       376 ---~~~L~lLy~~~g~~~  390 (443)
T PF04053_consen  376 ---FSGLLLLYSSTGDRE  390 (443)
T ss_dssp             ---HHHHHHHHHHCT-HH
T ss_pred             ---ccccHHHHHHhCCHH
Confidence               345556666677654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.02  E-value=18  Score=36.00  Aligned_cols=398  Identities=11%  Similarity=-0.023  Sum_probs=205.3

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      ...++-.+.+..++.+....-.      .-|..-..+...|..-.+.|..+.+...|++.+...       |.....|..
T Consensus        52 i~~~~~~~~~~~~r~~y~~fL~------kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-------p~SvdlW~~  118 (577)
T KOG1258|consen   52 IQENDSIEDVDALREVYDIFLS------KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-------PLSVDLWLS  118 (577)
T ss_pred             HhccCchhHHHHHHHHHHHHHh------hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-------hhHHHHHHH
Confidence            3444444444555554443321      145555566677777888899999999999977765       333333322


Q ss_pred             -HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          209 -MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       209 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                       ++.+-...|+.+.-...|++|.......+-     ....|-.....-..++++..-...|++.+++-...+.    ...
T Consensus       119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~-----S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~----~~f  189 (577)
T KOG1258|consen  119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFL-----SDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLN----RHF  189 (577)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhcccchh-----ccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhH----HHH
Confidence             333334567777777778887776432211     1222333333335567777777777777665211100    000


Q ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHHHHH---------------HHHHHHcCCCCchHHHHHHHH-------HHHHHHCC
Q 008016          288 LPLFSLGSL--FIKEGKAVDAESVFSRIL---------------KIYTKVYGENDGRVGMAMCSL-------AHAKCANG  343 (581)
Q Consensus       288 ~~~~~la~~--~~~~g~~~~A~~~~~~al---------------~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g  343 (581)
                      ..+.....-  ....-..+++...-....               +..-+......+........+       -.++...-
T Consensus       190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~  269 (577)
T KOG1258|consen  190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE  269 (577)
T ss_pred             HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence            000000000  000011111111111100               000000000011111111111       11222223


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (581)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (581)
                      ...+.+-.++..+...-.  ...|....-...|......-...|+++...-.+++++--+.        .....|...+.
T Consensus       270 ~~~~kr~~fE~~IkrpYf--hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA--------~Y~efWiky~~  339 (577)
T KOG1258|consen  270 EEEEKRWGFEEGIKRPYF--HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCA--------LYDEFWIKYAR  339 (577)
T ss_pred             hHHHHHHhhhhhcccccc--ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHh--------hhHHHHHHHHH
Confidence            333334444443332111  12233333444556666677789999999999999886652        23356777777


Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  503 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (581)
                      .....|+.+-|...+..+.++.       .+........-+......|++..|...++....-.        |....+-.
T Consensus       340 ~m~~~~~~~~~~~~~~~~~~i~-------~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l  404 (577)
T KOG1258|consen  340 WMESSGDVSLANNVLARACKIH-------VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVL  404 (577)
T ss_pred             HHHHcCchhHHHHHHHhhhhhc-------CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHH
Confidence            7777899999988888887763       23333344555677778999999999999886532        44444444


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHH-HHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEV-MLTLKKVVSY-LDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~-~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      .-+.+..+.|+.+ .+.. +........  .+..++.. ...+...+.. +.-.++.+.|...+.+++.+.+..+.
T Consensus       405 ~~~~~e~r~~~~~-~~~~-~~~l~s~~~--~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~  476 (577)
T KOG1258|consen  405 RKINWERRKGNLE-DANY-KNELYSSIY--EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV  476 (577)
T ss_pred             HHHhHHHHhcchh-hhhH-HHHHHHHhc--ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence            5556666777776 5553 222222111  12223322 2233344433 44568889999999999888766544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=91.00  E-value=17  Score=35.69  Aligned_cols=104  Identities=8%  Similarity=-0.012  Sum_probs=71.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +|.+..+++.|..-+..+ -++++.+.+++.....       |....+|...........+|+.-+.+|.+++.-.-.  
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--   85 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--   85 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--
Confidence            788888999988877666 8999999999977665       555566777777778889999999999999864321  


Q ss_pred             CCCCHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          238 GKTSILLVTSL-LGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       238 ~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                             .+.| ..+..+-...|+...+....-+|.+.....
T Consensus        86 -------lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k  120 (656)
T KOG1914|consen   86 -------LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEK  120 (656)
T ss_pred             -------HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH
Confidence                   1111 223334444566666666655665554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=23  Score=36.86  Aligned_cols=49  Identities=18%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016          185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (581)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (581)
                      |..|..+.+....+......+....|..++..|++++|...|-+.+...
T Consensus       350 y~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  350 YKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            3334444444455666677888889999999999999999999988753

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=90.79  E-value=6  Score=36.00  Aligned_cols=96  Identities=24%  Similarity=0.352  Sum_probs=70.7

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      -+.++.++|+++.++..+.....    ..+.........++.++...||..++.+.+.......+....-.+.+...++.
T Consensus        86 ~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~  161 (380)
T KOG2908|consen   86 EQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS  161 (380)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence            34568999999999988876553    22335566778889999999999999999999999887776666656666777


Q ss_pred             HHHHHH-hccCHHHHHHHHHHHHH
Q 008016          209 MGSMYS-TLENYEKSMLVYQRVIN  231 (581)
Q Consensus       209 l~~~~~-~~g~~~~A~~~~~~al~  231 (581)
                      ++.-|+ ..|++..   +|+.++.
T Consensus       162 lssqYyk~~~d~a~---yYr~~L~  182 (380)
T KOG2908|consen  162 LSSQYYKKIGDFAS---YYRHALL  182 (380)
T ss_pred             HHHHHHHHHHhHHH---HHHHHHH
Confidence            766555 5577765   4444444

>PRK10941 hypothetical protein; Provisional

Probab=90.67  E-value=4.8  Score=36.21  Aligned_cols=73  Identities=15%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      ....+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.+.|.+..|..-++..++.+     |
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P  246 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P  246 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence            3456778889999999999999999999885        34444456778999999999999999999998865     6


Q ss_pred             CChhHH
Q 008016          494 DSLPVG  499 (581)
Q Consensus       494 ~~~~~~  499 (581)
                      +.|...
T Consensus       247 ~dp~a~  252 (269)
T PRK10941        247 EDPISE  252 (269)
T ss_pred             CchhHH
Confidence            666543

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=90.52  E-value=18  Score=35.29  Aligned_cols=180  Identities=13%  Similarity=0.016  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHH
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA-------VDAESVFSRILKIYT  318 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~~  318 (581)
                      .....+|+.++..|+|+-|...|+.+.+-+...  ......+.+.-..|.+....+..       ++...+++.++..+.
T Consensus       209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~  286 (414)
T PF12739_consen  209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL  286 (414)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence            346678999999999999999999888765321  11223344555556666655533       477788888888887


Q ss_pred             HHcC---CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccCCCCChHHHHHHHHHHHHH--HHcCChHH
Q 008016          319 KVYG---ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI--KDSNYMSLDDSIMENMRIDLAELL--HIVGRGQE  391 (581)
Q Consensus       319 ~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~la~~~--~~~g~~~~  391 (581)
                      +...   ........+....+.++...|.+.+|...+-+.....  ...     .....+.++..+|.++  ........
T Consensus       287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-----~~~~~alllE~~a~~~~~~~~~~~~~  361 (414)
T PF12739_consen  287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDL-----RPFGSALLLEQAAYCYASLRSNRPSP  361 (414)
T ss_pred             hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-----hhHhhHHHHHHHHHhhcccccCCCCc
Confidence            6311   1122455667777888888999888887776665542  111     0000233344455554  11100000


Q ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (581)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (581)
                      ..               ......+.-+..-|.-|.+.|+...|..+|.+++.++..
T Consensus       362 ~~---------------~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  362 GL---------------TRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             cc---------------hhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence            00               001122333344567899999999999999999998653

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.48  E-value=4.8  Score=37.60  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL--  277 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--  277 (581)
                      ..+..++..+|..|...|+++.|++.|.++-+.+..     ....+..+.++..+-...|+|..-..+..++......  
T Consensus       147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            334567889999999999999999999998776643     3567888889999999999999888888877665200  


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                      .....-+....+...|+  ....++|..|..+|-.+
T Consensus       222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence            00011122234444444  44555888888877654

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=90.37  E-value=13  Score=33.20  Aligned_cols=132  Identities=11%  Similarity=0.003  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 008016          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (581)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (581)
                      ++-++-+.+.++-.+...  .......++.++|..|.+.++.+.+.+++.+.++-....  .-..+...+...||.+|..
T Consensus        92 eeki~Elde~i~~~eedn--gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~d  167 (412)
T COG5187          92 EEKIEELDERIREKEEDN--GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYGD  167 (412)
T ss_pred             HHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhcc
Confidence            344455555555444322  244567899999999999999999999998887654332  2233455566677777766


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       342 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      +.-.++.++.....++.       +.|...........|.......++.+|-.++-..+..+.
T Consensus       168 ~~vV~e~lE~~~~~iEk-------GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~  223 (412)
T COG5187         168 RKVVEESLEVADDIIEK-------GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE  223 (412)
T ss_pred             HHHHHHHHHHHHHHHHh-------CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence            55555555554444442       455544444445566667777888888888887776553

>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.33  E-value=23  Score=38.23  Aligned_cols=193  Identities=15%  Similarity=0.084  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH------HcCC----hHHHHHHHHHHHH
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH------IVGR----GQEGRELLEECLL  401 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~g~----~~~A~~~~~~al~  401 (581)
                      ...+|.+|...|+.-+|+.+|.+|..-.      +.+.     ++..+..-..      ..|+    ...|..+|.++++
T Consensus       923 rfmlg~~yl~tge~~kAl~cF~~a~Sg~------ge~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~r  991 (1480)
T KOG4521|consen  923 RFMLGIAYLGTGEPVKALNCFQSALSGF------GEGN-----ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVR  991 (1480)
T ss_pred             HHhhheeeecCCchHHHHHHHHHHhhcc------ccHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHH
Confidence            3456778888999999999999987642      2222     1111111100      2232    1224455555555


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                      +.                      ...+-.+.+.++.-+|++.    .++++|..+....++-.-..+.|.+-+|...+-
T Consensus       992 ll----------------------e~hn~~E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~ 1045 (1480)
T KOG4521|consen  992 LL----------------------EEHNHAEEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL 1045 (1480)
T ss_pred             HH----------------------HHhccHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence            44                      3345556666666666653    455667777777777777778888887765554


Q ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH------HHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008016          482 EALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL------KRVLR-IQEREFGSESEEVMLTLKKVVSYLDK  554 (581)
Q Consensus       482 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~------~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~  554 (581)
                      +-         ++......++..+..++...|+.+  ++..+      ++... +.+..-..........+..|=..+..
T Consensus      1046 ~n---------pdserrrdcLRqlvivLfecg~l~--~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~ 1114 (1480)
T KOG4521|consen 1046 RN---------PDSERRRDCLRQLVIVLFECGELE--ALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVA 1114 (1480)
T ss_pred             cC---------CcHHHHHHHHHHHHHHHHhccchH--HHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHh
Confidence            32         444445577888888888888864  22111      11111 11111111112222334444456677


Q ss_pred             cCChhhhHH-HHHHHHHHH
Q 008016          555 LGRKEEKFP-LKKRLSNLR  572 (581)
Q Consensus       555 ~g~~~~A~~-~~~~a~~l~  572 (581)
                      .+++.+|.. .|+.+..+.
T Consensus      1115 RhN~RkaatvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1115 RHNFRKAATVMYEYAMRLE 1133 (1480)
T ss_pred             hcchhHHHHHHHHHHHHhc
Confidence            888877765 466665554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.86  E-value=12  Score=33.70  Aligned_cols=75  Identities=20%  Similarity=0.316  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ....++..++..+...|+++.++..+++.+..        +|..-..+..+-..|...|+...|+..|++.-.....-.|
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg  222 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG  222 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence            35678889999999999999999999998877        6666778889999999999999999999998876554444


Q ss_pred             CCC
Q 008016          323 END  325 (581)
Q Consensus       323 ~~~  325 (581)
                      .++
T Consensus       223 i~P  225 (280)
T COG3629         223 IDP  225 (280)
T ss_pred             CCc
Confidence            443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=89.63  E-value=5.8  Score=37.23  Aligned_cols=103  Identities=10%  Similarity=0.049  Sum_probs=77.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC------HH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS------IL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      ..-|..++++++|..|..-|..+++++.+...-..      .+    ...+...+..||...++.+-|+....+.+.+  
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l--  257 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL--  257 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence            34466778889999999999999998866422111      11    2234567889999999999999999888876  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                            +|....-+..-|.++....+|.+|-..+--+.-++
T Consensus       258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  66677777888999999999999987665554433

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.48  E-value=5.2  Score=27.47  Aligned_cols=44  Identities=14%  Similarity=0.049  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI  159 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  159 (581)
                      .....+...|..+-+.|++.+|+.+|+++++.+...+...++.+
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~   47 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP   47 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            34456888899999999999999999999999888764444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.32  E-value=1  Score=43.79  Aligned_cols=90  Identities=23%  Similarity=0.195  Sum_probs=71.0

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 008016          383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH  462 (581)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  462 (581)
                      +...|+...|..++..|+.....       .......+||.+....|-...|-.++.+++.+.        .......+.
T Consensus       617 wr~~gn~~~a~~cl~~a~~~~p~-------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--------~sepl~~~~  681 (886)
T KOG4507|consen  617 WRAVGNSTFAIACLQRALNLAPL-------QQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--------SSEPLTFLS  681 (886)
T ss_pred             eeecCCcHHHHHHHHHHhccChh-------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--------ccCchHHHh
Confidence            34579999999999998765321       222356789999999999999999999999873        112235678


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          463 LGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       463 la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      +|+++....+.++|++.+++|++..
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~  706 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLT  706 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcC
Confidence            8999999999999999999998854

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=89.24  E-value=11  Score=30.98  Aligned_cols=164  Identities=8%  Similarity=0.016  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHHH
Q 008016          161 EVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-----TLENYEKSMLVYQRVINVLE  234 (581)
Q Consensus       161 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~~~~  234 (581)
                      .++....||.-+.. ..++++|..+|..       . -+........+.+|..+.     ..++...|++.+..+.+.  
T Consensus        33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~-------n-Cden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--  102 (248)
T KOG4014|consen   33 RPESCQLLGDYLEGIQKNFQAAVKVFKK-------N-CDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--  102 (248)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHh-------c-ccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--
Confidence            34444455443322 3445555555443       2 222334445566776654     346788888888887652  


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH--------
Q 008016          235 SRYGKTSILLVTSLLGMAKVLGSI-----G--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK--------  299 (581)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--------  299 (581)
                           +   ...+...+|.+....     +  +.++|++++.++-++-          ...+.+.|...|..        
T Consensus       103 -----n---~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~  164 (248)
T KOG4014|consen  103 -----N---IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTN  164 (248)
T ss_pred             -----C---CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhccc
Confidence                 2   244566666666543     2  3678888888876541          12233334443332        


Q ss_pred             ----------------cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 008016          300 ----------------EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  359 (581)
Q Consensus       300 ----------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  359 (581)
                                      ..+.+.|.++-.+|-++          ....+..++...|-.    -.+.++|..+-.++.++.
T Consensus       165 ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~  234 (248)
T KOG4014|consen  165 APGEGKPLDRAELGSLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM  234 (248)
T ss_pred             CCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence                            24455565555555443          334566677776643    236788999999998887


Q ss_pred             Hhh
Q 008016          360 KDS  362 (581)
Q Consensus       360 ~~~  362 (581)
                      ++.
T Consensus       235 ~e~  237 (248)
T KOG4014|consen  235 EEL  237 (248)
T ss_pred             HHH
Confidence            764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=89.17  E-value=8.1  Score=29.28  Aligned_cols=73  Identities=15%  Similarity=0.088  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      +..+|....+.+++-.++-.|++|+.+.++.......       ..+....+||..+...|+.+-.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            4668888899999999999999999998877322111       234557899999999999999999998777665444

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=88.72  E-value=0.97  Score=42.65  Aligned_cols=136  Identities=16%  Similarity=0.156  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhc----CCCCcchHHHHH--H----HHHHHHHcCChHHHHHHHHHH
Q 008016          415 VTHLLNLAASYSRS-KNFVEAERLLRICLDIMTKTV----GPDDQSISFPML--H----LGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       415 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~--~----la~~~~~~g~~~~A~~~~~~a  483 (581)
                      ..++..+|..|... .+.-.|..++.++++......    .+..+.-..++.  .    ....-.-.++.++   +--++
T Consensus       245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d~---~Rmqa  321 (615)
T KOG0508|consen  245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPDE---MRMQA  321 (615)
T ss_pred             HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChHH---HHHHH
Confidence            34555555555433 346677888888877655411    111111111110  0    0111111122221   22356


Q ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 008016          484 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK  554 (581)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  554 (581)
                      +-+.++++|++||++......-|-+|...|+++ ..++++.-|+.+.++.+.|.+|.+...+...+.++..
T Consensus       322 LiirerILgpsh~d~sYyir~rgavyad~g~~~-rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFE-RCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHhCCCCCCceeEEEeeeeeecCCccHH-HHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            777888999999998777777899999999999 9999999999999999999999888888887776654

>PF12854 PPR_1: PPR repeat

Probab=88.69  E-value=0.95  Score=25.42  Aligned_cols=28  Identities=25%  Similarity=0.451  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      ...+|+.+...|.+.|+.++|.++++++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3568899999999999999999999864

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=88.64  E-value=28  Score=34.74  Aligned_cols=363  Identities=13%  Similarity=0.038  Sum_probs=186.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILD-IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      +..-|..-.+.|..+.+...|++++...          |.....+. .++.+--..|+...-...|+++......   + 
T Consensus        82 W~kfA~~E~klg~~~~s~~Vfergv~ai----------p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~---d-  147 (577)
T KOG1258|consen   82 WKKFADYEYKLGNAENSVKVFERGVQAI----------PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL---D-  147 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc---c-
Confidence            4455566688999999999999998763          22223322 2333334567778888888888877622   1 


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH----
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRVIT----  273 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~----  273 (581)
                      -.....|-..-..-..++++..-...|++.+++-...+    +.....+.....-  -...-..++....-.....    
T Consensus       148 F~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~----~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~  223 (577)
T KOG1258|consen  148 FLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQL----NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKI  223 (577)
T ss_pred             hhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHh----HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhc
Confidence            11112233333333567778888888888777521110    0000000000000  0001112222211111110    


Q ss_pred             -----------HHHHhcCCCChhhHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016          274 -----------ILELNRGTESADLVLPLFSLG-------SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (581)
Q Consensus       274 -----------~~~~~~~~~~~~~~~~~~~la-------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (581)
                                 ..-.......+........+.       .++...-...+....++..+...-....+..+.....|..-
T Consensus       224 ~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~y  303 (577)
T KOG1258|consen  224 THSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYY  303 (577)
T ss_pred             ccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHH
Confidence                       000000000010001110111       11111112222222222222211111122233445566666


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (581)
                      ...-...|+++...-.+++++--+..          ....|...+......|+.+-|...+..+.++..       +...
T Consensus       304 Ldf~i~~g~~~~~~~l~ercli~cA~----------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-------k~~~  366 (577)
T KOG1258|consen  304 LDFEITLGDFSRVFILFERCLIPCAL----------YDEFWIKYARWMESSGDVSLANNVLARACKIHV-------KKTP  366 (577)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhHHhh----------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-------CCCc
Confidence            67777899999999999998865432          234566777777778999999888888877652       2233


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                      .+...-+..-...|++..|...+++...-        -|....+-..-+.....+|+.+.+.. +...+...  ..|..+
T Consensus       367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~~~~~~  435 (577)
T KOG1258|consen  367 IIHLLEARFEESNGNFDDAKVILQRIESE--------YPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--YEGKEN  435 (577)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHhh--------CCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--cccccC
Confidence            34444566667789999999999988762        25555555566677788899888875 22222211  122333


Q ss_pred             hhH-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016          496 LPV-GEALDCLVSIQTRLGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       496 ~~~-~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~  529 (581)
                      +.. ...+...++......+....|...+.++.++
T Consensus       436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~  470 (577)
T KOG1258|consen  436 NGILEKLYVKFARLRYKIREDADLARIILLEANDI  470 (577)
T ss_pred             cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            332 2334445555544443333777777777654

>PF13041 PPR_2: PPR repeat family

Probab=88.60  E-value=2.4  Score=26.34  Aligned_cols=28  Identities=21%  Similarity=-0.008  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALY  485 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (581)
                      .++..+...+.+.|++++|.++|++..+
T Consensus         4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    4 VTYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4788899999999999999999999875

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.56  E-value=11  Score=35.50  Aligned_cols=107  Identities=13%  Similarity=0.003  Sum_probs=73.6

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--
Q 008016          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK--  447 (581)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--  447 (581)
                      ..+-..+..+|.-|...|+++.|++.|-++-..+..     ...+...+.++..+-...|+|..-..+-.+|......  
T Consensus       147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  147 ESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            344567788999999999999999999997776633     3566777888888888899998888877777664200  


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                      .....-+.-..+...++  ....++|..|.+++-.+
T Consensus       222 ~~~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  222 NLAQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             hHHHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence            00011223334444444  44556888888887655

>PRK10941 hypothetical protein; Provisional

Probab=88.50  E-value=7.6  Score=34.96  Aligned_cols=67  Identities=10%  Similarity=0.034  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                      .....+.++-.+|...++++.|+.+.+..+.+        .|+...-+...|.+|.+.|.+..|..-++..++.+
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            35667888899999999999999999999988        44555667778999999999999999999888764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=88.24  E-value=0.55  Score=25.39  Aligned_cols=28  Identities=21%  Similarity=0.276  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          544 TLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      ++..+...|.+.|++++|.++|+++.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            4677889999999999999999988653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13041 PPR_2: PPR repeat family

Probab=88.04  E-value=2.8  Score=26.05  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ..+|+.+-..|.+.|++++|.++|+++.+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            357888999999999999999999998865

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.69  E-value=9.8  Score=28.46  Aligned_cols=101  Identities=15%  Similarity=0.095  Sum_probs=58.8

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCC
Q 008016          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      .+.-++..|++-+|+++.+..+....+      +. .....+..-|.++..+    .+.+-=..++.-+++.+.+.. .-
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~------~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~-~L   73 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGE------DE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV-EL   73 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccC------CC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh-cc
Confidence            356688999999999999998876322      22 1113345556666443    455555555555555554432 23


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      .|..+..++.+|.-+.....|+++..-.++++.
T Consensus        74 sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   74 SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            455666666666655444445555555444443

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway

Probab=87.58  E-value=57  Score=37.13  Aligned_cols=155  Identities=15%  Similarity=0.086  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC-------------------
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR-------------------  388 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  388 (581)
                      ..+....+|..+...|++.+|+..|.+++...+.    ..|.-+.+.++..++.+..-.+.                   
T Consensus       241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~----~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~  316 (1185)
T PF08626_consen  241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS----SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISS  316 (1185)
T ss_pred             hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh----cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCC
Confidence            3455667899999999999999999999999876    35665666665555443321110                   


Q ss_pred             -------------------------------------hHHHHHHHHHHHHHHHHhc---CCCChH--HHHHHHHHHHHHH
Q 008016          389 -------------------------------------GQEGRELLEECLLITEKYK---GKEHPS--FVTHLLNLAASYS  426 (581)
Q Consensus       389 -------------------------------------~~~A~~~~~~al~~~~~~~---~~~~~~--~~~~~~~la~~~~  426 (581)
                                                           .+.-...+++++..+.+..   ....|.  ...+...++.++.
T Consensus       317 ~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~  396 (1185)
T PF08626_consen  317 STSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLV  396 (1185)
T ss_pred             ccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHH
Confidence                                                 1111224455555554442   111222  3355566677776


Q ss_pred             Hcc--------------------CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          427 RSK--------------------NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       427 ~~g--------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      ...                    .-.++..++.+++......+  ...+....+..+|.+|...|-..++.-+++.++..
T Consensus       397 ~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~  474 (1185)
T PF08626_consen  397 AQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ  474 (1185)
T ss_pred             HhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            666                    67788888888887644322  23455678899999999999999988888888776


Q ss_pred             HH
Q 008016          487 RE  488 (581)
Q Consensus       487 ~~  488 (581)
                      .-
T Consensus       475 ~~  476 (1185)
T PF08626_consen  475 LV  476 (1185)
T ss_pred             hc
Confidence            53

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.32  E-value=9.4  Score=37.38  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHH
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRV  229 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~a  229 (581)
                      .|..||.....+|+++-|+.+|+++
T Consensus       349 ~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  349 KWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            3455555555555555555555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.30  E-value=12  Score=35.21  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCC----CCCh----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMS----LDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK  407 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  407 (581)
                      |..++++++|..|..-|..+++++.+....+    +...    ....+-..|..+|..+++.+.|+....+.+..     
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-----  257 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-----  257 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence            4455667777777777777777766531111    1111    12233456888999999999999998887765     


Q ss_pred             CCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       408 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                         +|....-+...|.++....+|.+|-..+--+.-++
T Consensus       258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy  292 (569)
T PF15015_consen  258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY  292 (569)
T ss_pred             ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               45555666777888889999999887766554443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=87.07  E-value=9.1  Score=34.15  Aligned_cols=73  Identities=22%  Similarity=0.082  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCCh
Q 008016          417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSL  496 (581)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  496 (581)
                      .+...+..|...|.+.+|+++.++++.+        +|-....+..+..++...|+--.|.+.|++.-+..+..+|-+..
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd  352 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD  352 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence            4455677899999999999999999885        56666778889999999999999999999988888777776554


Q ss_pred             h
Q 008016          497 P  497 (581)
Q Consensus       497 ~  497 (581)
                      +
T Consensus       353 d  353 (361)
T COG3947         353 D  353 (361)
T ss_pred             h
Confidence            4

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.78  E-value=8.1  Score=26.84  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (581)
                      ....++..|...-+.|++++|+.+|.++++.+...+.
T Consensus         5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk   41 (77)
T cd02683           5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLK   41 (77)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence            3455888889999999999999999999998877653

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.76  E-value=20  Score=32.13  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      ..+...+..|...|.+.+|+.+.++++..        +|..-..+..+-.++...|+--.+...|++.-+..+.-+|-+.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v  351 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV  351 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence            44556678899999999999999999987        6666778888899999999999999999988877776665543


Q ss_pred             ch
Q 008016          326 GR  327 (581)
Q Consensus       326 ~~  327 (581)
                      ..
T Consensus       352 dd  353 (361)
T COG3947         352 DD  353 (361)
T ss_pred             ch
Confidence            33

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=86.76  E-value=23  Score=31.69  Aligned_cols=133  Identities=16%  Similarity=0.066  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (581)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (581)
                      .-++-++-+.+.++-.+..   + .......++.++|..|.+.++.+.+.+++.+.+.-....  .-..+...+-..+|.
T Consensus        90 kneeki~Elde~i~~~eed---n-gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~  163 (412)
T COG5187          90 KNEEKIEELDERIREKEED---N-GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGL  163 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhc---c-cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHH
Confidence            3345556666666555442   2 234456788999999999999999999999887765433  334455556667787


Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      +|..+.-.++.++.....++   +....+..+...++  .|.......++.+|..++-..+..+
T Consensus       164 ~y~d~~vV~e~lE~~~~~iE---kGgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF  222 (412)
T COG5187         164 IYGDRKVVEESLEVADDIIE---KGGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTF  222 (412)
T ss_pred             hhccHHHHHHHHHHHHHHHH---hCCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhccc
Confidence            77665555555444444433   32111222222333  3555566778888888887776644

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.93  E-value=1.4  Score=26.51  Aligned_cols=26  Identities=12%  Similarity=0.036  Sum_probs=23.6

Q ss_pred             HHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          546 KKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       546 ~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      ..||..|...|+.+.|.+++++++.-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            57899999999999999999999853

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.93  E-value=9.3  Score=26.43  Aligned_cols=36  Identities=8%  Similarity=0.011  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQ  151 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~  151 (581)
                      .....+...|..+-+.|++++|+.+|..+++.+...
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~   39 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA   39 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence            445568888999999999999999999999987664

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.90  E-value=1.8  Score=26.08  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALY  485 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~  485 (581)
                      ..||..|...|+.+.|.+.+++++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5789999999999999999999985

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.88  E-value=8  Score=26.58  Aligned_cols=43  Identities=28%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (581)
                      +..+...|.-+-..|++.+|+.+|+++++.+.+.....||.+.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            3445556667788999999999999999988776444555544

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.47  E-value=1.5  Score=41.56  Aligned_cols=75  Identities=15%  Similarity=0.044  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          501 ALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       501 ~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ++..|.+++.-.|++. .|++.++..---...++....+-.+.+++.+|.+|..+++|.+|++.|...+..-.+.+
T Consensus       124 SligLlRvh~LLGDY~-~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k  198 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYY-QALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK  198 (404)
T ss_pred             HHHHHHHHHHhccCHH-HHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3566888999999999 88888765422222233334456678899999999999999999999999988776665

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=85.46  E-value=36  Score=32.75  Aligned_cols=139  Identities=17%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHhhcC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY--VYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ..-...+..++..++|..|..+++......       ++... ...+..+..+|  ....++.+|.+.++........+ 
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl-------~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l-  202 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRL-------PGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL-  202 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------Cchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-
Confidence            346778889999999999999999987631       11122 34555665555  55778899999998865542110 


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                         ......+..+....       ++...+.....................+...|.--...|+|+.|...+-+++++..
T Consensus       203 ---~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~  272 (379)
T PF09670_consen  203 ---NQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLA  272 (379)
T ss_pred             ---HhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence               00011111111111       11111111111111100000122233333334444568999999999999988753

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.44  E-value=1.8  Score=41.05  Aligned_cols=74  Identities=19%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      -+...|.+++.-.|+|..|++.++..---.+..+..-.+-...+++.+|.+|..+++|.+|++.|...+-...+
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r  196 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR  196 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999887653211111222234445678899999999999999999999998875443

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=85.20  E-value=31  Score=31.74  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=65.8

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 008016          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (581)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (581)
                      +..+.++.++|++++++.++.....    ..+..+..+....|+++...|+..++.+.+...-.......+ -.+.+-..
T Consensus        84 ~~~~~~D~~~al~~Le~i~~~~~~~----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~-v~~~Vh~~  158 (380)
T KOG2908|consen   84 VSEQISDKDEALEFLEKIIEKLKEY----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDG-VTSNVHSS  158 (380)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccC-CChhhhhh
Confidence            3455679999999999999887653    223455667788999999999999999999988777665532 23333344


Q ss_pred             HHHHH-HHHHHccCHHHHHHH
Q 008016          418 LLNLA-ASYSRSKNFVEAERL  437 (581)
Q Consensus       418 ~~~la-~~~~~~g~~~~A~~~  437 (581)
                      ++.++ ..|...|++......
T Consensus       159 fY~lssqYyk~~~d~a~yYr~  179 (380)
T KOG2908|consen  159 FYSLSSQYYKKIGDFASYYRH  179 (380)
T ss_pred             HHHHHHHHHHHHHhHHHHHHH
Confidence            45554 455566777655433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=85.03  E-value=0.78  Score=43.24  Aligned_cols=72  Identities=15%  Similarity=0.114  Sum_probs=62.5

Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR  511 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  511 (581)
                      +++-+.+..+++.||++.......|-+|..+|+++.-+++++-|+++.++.+.|-+|.+...+...+.++..
T Consensus       320 qaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~  391 (615)
T KOG0508|consen  320 QALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF  391 (615)
T ss_pred             HHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence            456667778899999988766677889999999999999999999999999999999998888888877653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=84.96  E-value=1.7  Score=24.12  Aligned_cols=28  Identities=32%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          544 TLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      +++.+...|.+.|++++|.++|+++.+.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            4677888999999999999999998653

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=84.89  E-value=2.7  Score=37.46  Aligned_cols=67  Identities=9%  Similarity=-0.020  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV  192 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  192 (581)
                      .....-...+....+.|+.++|..+|+-++.+          .|..+.++..+|......++.-+|-.+|-+++.+.
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis  180 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL----------APTNPQILIEMGQFREMHNEIVEADQCYVKALTIS  180 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc----------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence            34444667778889999999999999999988          88889999999999988899999999998887764

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=83.93  E-value=17  Score=27.69  Aligned_cols=73  Identities=12%  Similarity=0.106  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-------VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +..+|....+.+++-.++-.|++|+.+.++....+...       .+.+..+||..+..+|+.+=.++|++-|-+.....
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL   83 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL   83 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence            45678888999999999999999999988763222111       34567899999999999999999999887765543

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=83.35  E-value=62  Score=33.83  Aligned_cols=228  Identities=15%  Similarity=0.103  Sum_probs=119.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      ++........|.......|++++....-..+..+.    +..|.+..-|..--......++-.++...|++++.-...+ 
T Consensus       109 ~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~----pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v-  183 (881)
T KOG0128|consen  109 NSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA----PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV-  183 (881)
T ss_pred             cccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc----CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc-
Confidence            55555667777888888999998877777777665    3334443322221112223477888888999887643211 


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                       +.....+......+..+...++++.....|.+++........ ........+...-..|...-..++-..++...+..-
T Consensus       184 -~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~  261 (881)
T KOG0128|consen  184 -PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP  261 (881)
T ss_pred             -hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence             000122333344444556678899999999999987544332 222334455555555655555566666666655531


Q ss_pred             HHHcCCCCchHHHHHHHHH--H-HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLA--H-AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (581)
                           -+.......+....  . ......+++.|..-+.+.+....+.   ....+.....+..+.......|+...-..
T Consensus       262 -----~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~---~q~~~~~~q~~~~yidfe~~~G~p~ri~l  333 (881)
T KOG0128|consen  262 -----LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERL---VQKEPIKDQEWMSYIDFEKKSGDPVRIQL  333 (881)
T ss_pred             -----chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence                 11111122222222  1 1123345555555555544444432   11122223334455555556666554444


Q ss_pred             HHHHHH
Q 008016          395 LLEECL  400 (581)
Q Consensus       395 ~~~~al  400 (581)
                      .++++.
T Consensus       334 ~~eR~~  339 (881)
T KOG0128|consen  334 IEERAV  339 (881)
T ss_pred             HHHHHH
Confidence            444443

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.10  E-value=13  Score=25.71  Aligned_cols=36  Identities=22%  Similarity=0.259  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI  152 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~  152 (581)
                      ....++..|...-..|++++|+.+|.++++.+....
T Consensus         5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~   40 (75)
T cd02678           5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            445688888889999999999999999999887765

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.97  E-value=43  Score=31.70  Aligned_cols=144  Identities=13%  Similarity=0.112  Sum_probs=101.0

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHH
Q 008016          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (581)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (581)
                      ..++...++++|..+-+..+....-. +...-+--.+.+++.+..+|...|+...-...+...+... .+..+....+..
T Consensus       134 Lfl~d~K~~kea~~~~~~~l~~i~~~-nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA-tLrhd~e~qavL  211 (493)
T KOG2581|consen  134 LFLIDQKEYKEADKISDALLASISIQ-NRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA-TLRHDEEGQAVL  211 (493)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-hhcCcchhHHHH
Confidence            44567788999988877765432110 0011133345677788888888999887777777666554 334555666667


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      .+.+-+.|...+.|+.|.....+..--  .  ...+...+..++.+|.+..-+++|..|.+++-+|+...
T Consensus       212 iN~LLr~yL~n~lydqa~~lvsK~~~p--e--~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka  277 (493)
T KOG2581|consen  212 INLLLRNYLHNKLYDQADKLVSKSVYP--E--AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA  277 (493)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhcccCc--c--ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence            788889999999999998877665311  0  11223678889999999999999999999999998763

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=82.72  E-value=2.4  Score=22.73  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                      +|+.+-..|.+.|++++|.+.+++..+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence            467788899999999999999998765

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=82.29  E-value=2.7  Score=23.20  Aligned_cols=29  Identities=14%  Similarity=0.186  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          543 LTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       543 ~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      .++..+...+.+.|+++.|..+|+++.+.
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~   30 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQ   30 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            35778889999999999999999988763

>KOG3024 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.08  E-value=37  Score=30.35  Aligned_cols=65  Identities=11%  Similarity=0.007  Sum_probs=41.0

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          503 DCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       503 ~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      .+++.+....+..+++-..+.+.+++.... ++...-..+..+..+|..+...+++.+|..+|-..
T Consensus        89 anl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~  153 (312)
T KOG3024|consen   89 ANLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS  153 (312)
T ss_pred             HHHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence            455666666665553444556666664443 32222333456778899999999999999888654

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=80.61  E-value=25  Score=27.38  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016          343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (581)
Q Consensus       343 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (581)
                      |....-..++++++..+...... .+++....++...+..      .+.+.++|......   ..|.   ..+..|...|
T Consensus        40 ~~~~~L~~lLer~~~~f~~~~~Y-~nD~RylkiWi~ya~~------~~~~~~if~~l~~~---~IG~---~~A~fY~~wA  106 (126)
T PF08311_consen   40 GKQSGLLELLERCIRKFKDDERY-KNDERYLKIWIKYADL------SSDPREIFKFLYSK---GIGT---KLALFYEEWA  106 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSGGG-TT-HHHHHHHHHHHTT------BSHHHHHHHHHHHH---TTST---TBHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhHhh-cCCHHHHHHHHHHHHH------ccCHHHHHHHHHHc---CccH---HHHHHHHHHH
Confidence            55566677889998887653212 2344444454444432      23777777765432   2333   3455777889


Q ss_pred             HHHHHccCHHHHHHHHHHHH
Q 008016          423 ASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       423 ~~~~~~g~~~~A~~~~~~al  442 (581)
                      ..+...|++++|.+.|+.++
T Consensus       107 ~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen  107 EFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhC
Confidence            99999999999999998764

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>smart00101 14_3_3 14-3-3 homologues

Probab=80.38  E-value=41  Score=29.77  Aligned_cols=183  Identities=10%  Similarity=0.024  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ++..|+..-+.|+|++.+....++.+...       +..-...-.+.+..+|-. .|....+...+.........  ...
T Consensus         4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~-------~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~--~~~   74 (244)
T smart00101        4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD-------SEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RGN   74 (244)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcC-------CccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhc--cCc
Confidence            55677777888999999998888765310       012233344556666644 46667777666653332111  111


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHhc-----CC-----HHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS---ILLVTSLLGMAKVLGSI-----GR-----AKKAVE  266 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~la~~~~~~-----g~-----~~~A~~  266 (581)
                      +...    .+..-|. ..=-++-...+...+.+.....-+..   ...+..+-..|..|...     |+     .++|..
T Consensus        75 ~~~~----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~  149 (244)
T smart00101       75 EDHV----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV  149 (244)
T ss_pred             hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            1111    1111111 11123445566667776655433321   22333333444444322     22     458899


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY  317 (581)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  317 (581)
                      .|+.|+++....+.+.+|.......+.+..|+. .++.++|....+++.+-.
T Consensus       150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A  201 (244)
T smart00101      150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  201 (244)
T ss_pred             HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999998876778888777777776666655 699999998887777653

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	581
3nf1_A	311	Crystal Structure Of The Tpr Domain Of Kinesin Ligh		3e-09
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		8e-08
3ceq_A	283	The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc		3e-07
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		1e-07
3edt_B	283	Crystal Structure Of The Mutated S328n Hklc2 Tpr Do		1e-07

>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  K +G D   ++  + 
Sbjct: 98  IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157
Query: 462 HLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI---QTRLGEDDTK 518
           +L +   +  + +E E     AL I +   G D   V +  + L S    Q +  + +T 
Sbjct: 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217
Query: 519 LLELLKRVLRIQEREFGSESEE 540
             E+L R     EREFGS  +E
Sbjct: 218 YKEILTRA---HEREFGSVDDE 236

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSM 212
           +G+   +   +L+I+AL Y      K    LL+    I + +L  D P + A L ++  +
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
           Y     Y+++  + +R + + E   GK    +   L  +A +  + G+A++    Y R +
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            I     G +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2) Length = 283

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 1/165 (0%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
            +      + KEAE L   AL IRE   GK    V + L  L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE-EVEYYY 150
Query: 524 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 2/175 (1%)
Query: 154 AGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD-SLKDDEPLLDAILLHMGSM 212
           +G+   +   +L+I+AL Y      K    LL+    I + +L  D P + A L ++  +
Sbjct: 35  SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI 272
           Y     Y+++  + +R + + E   GK    +   L  +A +  + G+A++    Y R +
Sbjct: 95  YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Query: 273 TILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL-KIYTKVYGENDG 326
            I     G +  ++     +L S ++K+GK  DAE+++  IL + + K +G  +G
Sbjct: 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209

>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL 463
           EK  G +HP   T L  LA  Y     + EA  LL   L I  KT+G D  +++  + +L
Sbjct: 32  EKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91
Query: 464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL 523
            +      + KEAE L   AL IRE   GK    V + L+ L  +    G+ + ++    
Sbjct: 92  AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE-EVEYYY 150
Query: 524 KRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL 568
           +R L I     G +   V  T   + S   K G+ ++   L K +
Sbjct: 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-34
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-30
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	8e-24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	5e-27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-17
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-12
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-18
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	8e-13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	1e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	1e-15
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-14
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-13
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-11
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	5e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-10
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	1e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	2e-06
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	7e-05
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-06
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-08
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	2e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	5e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	2e-08
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	4e-06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	8e-05
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	3e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-04

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  129 bits (328), Expect = 4e-34
 Identities = 59/290 (20%), Positives = 100/290 (34%), Gaps = 17/290 (5%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             H     S L     ++ + ++ +  LE   G     + T L  +A V     + K+A 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
            + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G+  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMRIDL 379
             V   + +LA      G AEE    Y++AL +        L            N    L
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT----RLGPDDPNVAKTKNN----L 175

Query: 380 AELLHIVGRGQEGRELLEECL-LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           A      G+ Q+   L +E L    EK  G  +       ++            ++    
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                   K    D  +++  +  LG       + + A  L   A   R+
Sbjct: 236 EYGSWY--KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  118 bits (297), Expect = 7e-30
 Identities = 57/292 (19%), Positives = 102/292 (34%), Gaps = 18/292 (6%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +     AV +  + +  LE   G +  D+   L  L  ++  + K  +A
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA 62

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
             + +  L I  K  G++   V   + +LA      G  +EA  L K+AL + +      
Sbjct: 63  AHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----V 118

Query: 367 LDD------SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
           L          + N    LA L    G+ +E        L I     G + P+      N
Sbjct: 119 LGKFHPDVAKQLNN----LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174

Query: 421 LAASYSRSKNFVEAERLLRICLDIM-TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKL 479
           LA+ Y +   + +AE L +  L     K  G  +       +H        ++ +++   
Sbjct: 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY 234

Query: 480 VLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 531
                + +  A   DS  V   L  L ++  R G+ +     L     R ++
Sbjct: 235 GEYGSWYK--ACKVDSPTVNTTLRSLGALYRRQGKLE-AAHTLEDCASRNRK 283

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  114 bits (289), Expect = 8e-29
 Identities = 57/276 (20%), Positives = 92/276 (33%), Gaps = 22/276 (7%)

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
                A  +  + L+   K  G +   V   +  LA         +EA  L   AL  I+
Sbjct: 15  VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA-IR 73

Query: 361 DSNY--------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +            +L++         LA L    G+ +E   L +  L I EK  GK HP
Sbjct: 74  EKTLGKDHPAVAATLNN---------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
                L NLA          E E   R  L+I    +GPDD +++    +L        +
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184

Query: 473 DKEAEKLVLEALY-IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 531
            ++AE L  E L    E  FG  +             +    +         +       
Sbjct: 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSAPYGEYGSW--Y 241

Query: 532 REFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567
           +    +S  V  TL+ + +   + G+ E    L+  
Sbjct: 242 KACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score =  100 bits (252), Expect = 8e-24
 Identities = 57/249 (22%), Positives = 92/249 (36%), Gaps = 22/249 (8%)

Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIV 386
             H          AV L K+AL    +             L+          LA +    
Sbjct: 7   HHHHSSGLVPRGSAVPLCKQALE-DLEKTSGHDHPDVATMLNI---------LALVYRDQ 56

Query: 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
            + +E   LL + L I EK  GK+HP+    L NLA  Y +   + EAE L +  L+I  
Sbjct: 57  NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506
           K +G     ++  + +L +   +  + +E E     AL I     G D   V +  + L 
Sbjct: 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176

Query: 507 SIQTRLGEDDTKLLELLKRVL-RIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK 565
           S   + G+       L K +L R  E+EFGS + +            +   ++ +  P  
Sbjct: 177 SCYLKQGKYQ-DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG 235

Query: 566 KRLSNLRMK 574
           +       K
Sbjct: 236 EY--GSWYK 242

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 1/150 (0%)

Query: 418 LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE 477
             +     S       A  L +  L+ + KT G D   ++  +  L +     N+ KEA 
Sbjct: 4   SHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63

Query: 478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSE 537
            L+ +AL IRE   GKD   V   L+ L  +  + G+   +   L KR L I+E+  G  
Sbjct: 64  HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK-EAEPLCKRALEIREKVLGKF 122

Query: 538 SEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567
             +V   L  +       G+ EE     +R
Sbjct: 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRR 152

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 1/109 (0%)

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTK 518
              H       L     A  L  +AL   E   G D   V   L+ L  +     +   +
Sbjct: 3   SSHHHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK-E 61

Query: 519 LLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKR 567
              LL   L I+E+  G +   V  TL  +     K G+ +E  PL KR
Sbjct: 62  AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  128 bits (323), Expect = 3e-33
 Identities = 65/326 (19%), Positives = 119/326 (36%), Gaps = 25/326 (7%)

Query: 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL 275
           + ++           N+     G      + +L  +     S GR + AV +  + +  L
Sbjct: 1   MHHHHHH---SSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL 57

Query: 276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL 335
           E   G +  D+   L  L  ++  + K  DA ++ +  L I  K  G++   V   + +L
Sbjct: 58  EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNL 117

Query: 336 AHAKCANGNAEEAVELYKKALRVIKDSNY--------MSLDDSIMENMRIDLAELLHIVG 387
           A      G  +EA  L K+AL  I++             L++         LA L    G
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALE-IREKVLGKDHPDVAKQLNN---------LALLCQNQG 167

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           + +E     +  L I +   G + P+      NLA+ Y +   F +AE L +  L    +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227

Query: 448 TV-GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506
              G  D       +H         + K+         + +  A   DS  V   L  L 
Sbjct: 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK--ACKVDSPTVTTTLKNLG 285

Query: 507 SIQTRLGEDDTKLLELLKRVLRIQER 532
           ++  R G+ +     L +  +R +++
Sbjct: 286 ALYRRQGKFE-AAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  128 bits (323), Expect = 4e-33
 Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 18/293 (6%)

Query: 204 AILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK 262
              LH +   Y++   YE ++ + ++ +  LE   G     + T L  +A V     + K
Sbjct: 27  LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86

Query: 263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
            A  + +  + I E   G +   +   L +L  L+ K GK  +AE +  R L+I  KV G
Sbjct: 87  DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD------SIMENMR 376
           ++   V   + +LA      G  EE    Y++AL + +      L            N  
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT----KLGPDDPNVAKTKNN-- 200

Query: 377 IDLAELLHIVGRGQEGRELLEECLLIT-EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE 435
             LA      G+ ++   L +E L    E+  G          ++            +  
Sbjct: 201 --LASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                      K    D  +++  + +LG       + + AE L   A+  R+
Sbjct: 259 SFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score =  110 bits (278), Expect = 5e-27
 Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 3/239 (1%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +  +Y     Y+ +  +    + + E   GK    +  +L  +A + G  G+ K+A  + 
Sbjct: 75  LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328
            R + I E   G +  D+   L +L  L   +GK  + E  + R L+IY    G +D  V
Sbjct: 135 KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194

Query: 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388
                +LA      G  ++A  LYK+ L    +  + S+DD           E     G+
Sbjct: 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKGK 253

Query: 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
            ++G    E       K    + P+  T L NL A Y R   F  AE L    +    +
Sbjct: 254 QKDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 96.5 bits (241), Expect = 4e-22
 Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 1/190 (0%)

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
           +L       GR +    L ++ L   EK  G +HP   T L  LA  Y     + +A  L
Sbjct: 32  NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91

Query: 438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP 497
           L   L I  KT+G D  +++  + +L +      + KEAE L   AL IRE   GKD   
Sbjct: 92  LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD 151

Query: 498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR 557
           V + L+ L  +    G+ + ++    +R L I + + G +   V  T   + S   K G+
Sbjct: 152 VAKQLNNLALLCQNQGKYE-EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210

Query: 558 KEEKFPLKKR 567
            ++   L K 
Sbjct: 211 FKQAETLYKE 220

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 1/168 (0%)

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                    +  +  G E P+ +  L NL   Y+    +  A  L +  L+ + KT G D
Sbjct: 5   HHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD 64

Query: 453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL 512
              ++  +  L +     N+ K+A  L+ +AL IRE   GKD   V   L+ L  +  + 
Sbjct: 65  HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 124

Query: 513 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 560
           G+   +   L KR L I+E+  G +  +V   L  +       G+ EE
Sbjct: 125 GKYK-EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 38/357 (10%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 40  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 97

Query: 256 GSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVD--------- 305
             +G   +A+    R + I  ELN     A     L++LG+++  +GK+           
Sbjct: 98  KVLGNFDEAIVCCQRHLDISRELNDKVGEARA---LYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 306 -----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
                      A   +   L + T +        G A  +L +     GN  +AV  +++
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAFGNLGNTHYLLGNFRDAVIAHEQ 212

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
            L + K+      D +       +L      +G  +   E  ++ LL+  + K       
Sbjct: 213 RLLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVE 266

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDK 474
                +L  +Y+  +++ +A       L I  +      +  +     LG     L    
Sbjct: 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC--WSLGNAYTALGNHD 324

Query: 475 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQE 531
           +A     + L I       D      A   L  +Q  LG   +    ++     I  
Sbjct: 325 QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 45/378 (11%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L   G       +    +  ++  + V      +    L      +      +    KA+
Sbjct: 12  LALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67

Query: 266 EIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324
           E +H  +T+   +      A       +LG+     G   +A     R L I  ++  + 
Sbjct: 68  EYHHHDLTLARTIGDQLGEAKA---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 124

Query: 325 DGRVGMAMCSLAHAKCANGNA--------------------EEAVELYKKALRVIKDSNY 364
                 A+ +L +   A G +                    + AV+ Y++ L ++     
Sbjct: 125 G--EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG- 181

Query: 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424
              D +       +L    +++G  ++     E+ LLI +++   +  +      NL  +
Sbjct: 182 ---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236

Query: 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
           Y     F  A    +  L +  +      ++ S     LG T   L   ++A    L+ L
Sbjct: 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC--YSLGNTYTLLQDYEKAIDYHLKHL 294

Query: 485 YI-REIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML 543
            I +E+    D +  G A   L +  T LG  D + +   ++ L I  RE G +S E+  
Sbjct: 295 AIAQEL---NDRIGEGRACWSLGNAYTALGNHD-QAMHFAEKHLEIS-REVGDKSGELT- 348

Query: 544 TLKKVVSYLDKLGRKEEK 561
               +      LG     
Sbjct: 349 ARLNLSDLQMVLGLSYST 366

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 7/147 (4%)

Query: 198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS 257
           D  +       +G+ Y+ L++YEK++  + + + + +    +       +   +     +
Sbjct: 262 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE--GRACWSLGNAYTA 319

Query: 258 IGRAKKAVEIYHRVITILE--LNRGTESA---DLVLPLFSLGSLFIKEGKAVDAESVFSR 312
           +G   +A+    + + I     ++  E     +L      LG  +      +   +    
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDS 379

Query: 313 ILKIYTKVYGENDGRVGMAMCSLAHAK 339
            L       G       M +  L   K
Sbjct: 380 SLNGVRPKLGRRHSMENMELMKLTPEK 406

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 35/244 (14%), Positives = 65/244 (26%), Gaps = 43/244 (17%)

Query: 322 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNY---MSLDDSIMENMR 376
           G         +         C +G+    V  ++ A++V  +                  
Sbjct: 1   GPGS-MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYS-------- 51

Query: 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER 436
             L      +    +  E     L +       +         NL  +     NF EA  
Sbjct: 52  -QLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIV 108

Query: 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL--------------------NRDKEA 476
             +  LDI  +      ++ +    +LG   +                      +  + A
Sbjct: 109 CCQRHLDISRELNDKVGEARAL--YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166

Query: 477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGS 536
                E L +       D    G A   L +    LG      +   ++ L I  +EFG 
Sbjct: 167 VDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFR-DAVIAHEQRLLIA-KEFGD 222

Query: 537 ESEE 540
           ++ E
Sbjct: 223 KAAE 226

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 54/351 (15%), Positives = 102/351 (29%), Gaps = 35/351 (9%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
                     L +       +           G +S+     L    + L + G  +  V
Sbjct: 11  ASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSM--CLELALEGERLCNAGDCRAGV 68

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND 325
             +   I     +  T SA        LG+ +   G    A       L +   +     
Sbjct: 69  AFFQAAIQAGTEDLRTLSAI----YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKAL---RVIKD--------SN----YMSLDDS 370
                +  +L +     G  +EA    ++ L   R + D         N    Y +    
Sbjct: 125 --EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + +           +        E  +E L +       +  +      NL  +Y    +
Sbjct: 183 LGQRNPGKFG--DDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI-REI 489
           F  A    +  L I  +  G D  +      +LG +   L + ++A +     L +  E+
Sbjct: 239 FQAAIEHHQERLRIA-REFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296

Query: 490 AFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE 540
               +     ++   L +  T L E +   +E   R L I  +E G    E
Sbjct: 297 ---GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIA-QELGDRIGE 342

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 85.0 bits (211), Expect = 7e-18
 Identities = 62/379 (16%), Positives = 131/379 (34%), Gaps = 50/379 (13%)

Query: 131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAI-LDIIALGYVYIGD----LKFVQSLL 185
           +G+     +    N      Q  +G+ G   + + L +        GD    + F Q+ +
Sbjct: 21  LGSGGGGTNSHDGNS-----QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75

Query: 186 DMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLV 245
                      +D   L AI   +G+ Y  L +Y K+M  ++  + + +S   +      
Sbjct: 76  QA-------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--A 126

Query: 246 TSLLGMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAV 304
            S   +   L  +GR  +A     R +T+  +L            L++LG+++  +GK +
Sbjct: 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA---LYNLGNVYHAKGKHL 183

Query: 305 D-----------------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE 347
                             A   +   LK+   +        G A  +L +     G+ + 
Sbjct: 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA--QGRACGNLGNTYYLLGDFQA 241

Query: 348 AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK 407
           A+E +++ LR+ ++      D +       +L      +G+ ++  E  +  L +  +  
Sbjct: 242 AIEHHQERLRIAREFG----DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL- 296

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
             E         +L  +Y+    F  A       L I  +      ++ +     LG   
Sbjct: 297 -GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC--WSLGNAH 353

Query: 468 YHLNRDKEAEKLVLEALYI 486
             +   + A K   + L +
Sbjct: 354 SAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 58/312 (18%), Positives = 90/312 (28%), Gaps = 37/312 (11%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           S          +G        +         + G     + L L   G      G     
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGS--SMCLELALEGERLCNAGDCRAG 67

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
            + F   ++  T    E+   +      L +A    G+  +A++ +K  L + K  N   
Sbjct: 68  VAFFQAAIQAGT----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN--- 120

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            D         +L   L ++GR  E     E  L +  +    +  S    L NL   Y 
Sbjct: 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYH 177

Query: 427 R-----------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH-LGITLY 468
                              +    A    +  L +M        Q  +      LG T Y
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRA---CGNLGNTYY 234

Query: 469 HLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR 528
            L   + A +   E L I    FG D      A   L +    LG+ +    E  KR L 
Sbjct: 235 LLGDFQAAIEHHQERLRIAR-EFG-DRAAERRANSNLGNSHIFLGQFE-DAAEHYKRTLA 291

Query: 529 IQEREFGSESEE 540
           +   E G    E
Sbjct: 292 LA-VELGEREVE 302

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 49/388 (12%), Positives = 117/388 (30%), Gaps = 31/388 (7%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           ++    NE   MI   +  DA  L       V++ I    +  + +    ++   +  + 
Sbjct: 11  RVGVKINEWYKMIRQFSVPDAEIL----KAEVEQDIQQMEEDQDLLIYYSLMCFRHQLML 66

Query: 177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAI--------LLHMGSMYSTLENYEKSMLVYQR 228
           D             + + L+  E     +        L   G      + Y +++  Y+ 
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 229 VINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL 288
               L                 +A+    + +   ++    + + I + N    S   + 
Sbjct: 127 AEKELPFVSDDIEK--AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ-NHPLYSIRTIQ 183

Query: 289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA 348
            LF +   +        A       L++   +  +    + +++ ++A++   +G+ + A
Sbjct: 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF--IAISLLNIANSYDRSGDDQMA 241

Query: 349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG 408
           VE ++KA +V ++     L   +       L+  L   G+ Q+  + +EE L        
Sbjct: 242 VEHFQKAAKVSREKVPDLLPKVL-----FGLSWTLCKAGQTQKAFQFIEEGLDHITARSH 296

Query: 409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY 468
           K +      L  +       +   +        L    K                     
Sbjct: 297 KFYKELFLFLQAVYKETVDERKIHDL-------LSYFEKKNLHAYIEACA--RSAAAVFE 347

Query: 469 HLNRDKEAEKLVLEALYIREIAFGKDSL 496
                ++A     + L  +E     + L
Sbjct: 348 SSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 69.1 bits (169), Expect = 8e-13
 Identities = 50/339 (14%), Positives = 108/339 (31%), Gaps = 31/339 (9%)

Query: 160 EEVAILDIIALGYVYIGDLKFVQS--LLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE 217
             V +   I   Y  I       +  L   +   +  +++D+ LL    L M   +  + 
Sbjct: 10  SRVGVK--INEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSL-MCFRHQLML 66

Query: 218 NYEKSMLVYQ------RVINVLESRYGKTSILLVT-SLLGMAKVLGSIGRAKKAVEIYHR 270
           +Y +    Y        ++  +E+   K + LL   SL              +A+  Y  
Sbjct: 67  DYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYRE 126

Query: 271 VITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG 329
               L  ++   E A+     F +   +    +   +     + L IY         R  
Sbjct: 127 AEKELPFVSDDIEKAEF---HFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTI 182

Query: 330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG 389
            ++  +A       + ++A+   + AL +  D          + N    +A      G  
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN----IANSYDRSGDD 238

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV 449
           Q   E  ++   ++ +      P     L  L+ +  ++    +A + +   LD +T   
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKV---LFGLSWTLCKAGQTQKAFQFIEEGLDHITARS 295

Query: 450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
                        L + L  + ++   E+ + + L   E
Sbjct: 296 HKF-------YKELFLFLQAVYKETVDERKIHDLLSYFE 327

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 50/313 (15%), Positives = 107/313 (34%), Gaps = 34/313 (10%)

Query: 196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL 255
            +D   L AI   +G+ Y  L +Y K++  +   + +  +   +       +   +   L
Sbjct: 36  TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE--AKASGNLGNTL 93

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD---------- 305
             +G   +A+    R + I               L++LG+++  +GK+            
Sbjct: 94  KVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151

Query: 306 ----------AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
                     A  ++   L + T + G+     G A  +L +     GN  +AV  +++ 
Sbjct: 152 PEDVRNALQAAVDLYEENLSLVTAL-GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
           L + K+      D +       +L      +G  +   E  ++ LL+  + K        
Sbjct: 210 LLIAKEFG----DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEA 263

Query: 416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
               +L  +Y+  +++ +A       L I  +      +  +     LG     L    +
Sbjct: 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQ 321

Query: 476 AEKLVLEALYIRE 488
           A     + L I  
Sbjct: 322 AMHFAEKHLEISR 334

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 65.7 bits (161), Expect = 8e-12
 Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 47/354 (13%)

Query: 119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD- 177
           LEL  E + +   G+    +   +    AV  Q+   +      AI   +   Y Y+ D 
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFE---AAV--QVGTEDLK-TLSAIYSQLGNAYFYLHDY 59

Query: 178 ---LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
              L++    L +   I      D+        ++G+    L N++++++  QR +++  
Sbjct: 60  AKALEYHHHDLTLARTI-----GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRA--------------------KKAVEIYHRVITI 274
               K       +L  +  V  + G++                    + AV++Y   +++
Sbjct: 115 ELNDKVGE--ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS 334
           +      + A       +LG+     G   DA     + L I  + +G+       A  +
Sbjct: 173 VT--ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-FGDKAA-ERRAYSN 228

Query: 335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE 394
           L +A    G  E A E YKK L + +       D ++       L     ++   ++  +
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLK----DRAVEAQSCYSLGNTYTLLQDYEKAID 284

Query: 395 LLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
              + L I ++ K  +         +L  +Y+   N  +A       L+I  + 
Sbjct: 285 YHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 48/264 (18%), Positives = 78/264 (29%), Gaps = 37/264 (14%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L   G    K G      S F   +++ T    E+   +      L +A     +  +A+
Sbjct: 8   LALEGERLCKSGDCRAGVSFFEAAVQVGT----EDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E +   L + +       D         +L   L ++G   E     +  L I+ +    
Sbjct: 64  EYHHHDLTLARTIG----DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND- 118

Query: 410 EHPSFVTHLLNLAASYSR--------------------SKNFVEAERLLRICLDIMTKTV 449
                   L NL   Y                            A  L    L ++T   
Sbjct: 119 -KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177

Query: 450 GPDDQSISFPMLH-LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 508
               Q  +      LG T Y L   ++A     + L I +  FG D      A   L + 
Sbjct: 178 DRAAQGRA---FGNLGNTHYLLGNFRDAVIAHEQRLLIAK-EFG-DKAAERRAYSNLGNA 232

Query: 509 QTRLGEDDTKLLELLKRVLRIQER 532
              LGE +    E  K+ L +  +
Sbjct: 233 YIFLGEFE-TASEYYKKTLLLARQ 255

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 97  SKTLHDHSS---------NLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEA 147
           S+ L+D            N++                     +      A+DL + N   
Sbjct: 113 SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172

Query: 148 VKEQINAGNKGIEEVAILDIIALGYVYIGD----LKFVQSLLDMMSGIVDSLKDDEPLLD 203
           V      G++   +      +   +  +G+    +   +  L +          D+    
Sbjct: 173 VTA---LGDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAER 223

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ Y  L  +E +   Y++ + +      +       S   +      +   +K
Sbjct: 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEK 281

Query: 264 AVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
           A++ + + + I  EL    +        +SLG+ +   G    A     + L+I  +V 
Sbjct: 282 AIDYHLKHLAIAQELK---DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 80.6 bits (199), Expect = 1e-16
 Identities = 50/390 (12%), Positives = 132/390 (33%), Gaps = 32/390 (8%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
            + E  NE    I   +  DA  L       +K++++   +  +      ++   +  + 
Sbjct: 11  SIGEKINEWYMYIRRFSIPDAEYL----RREIKQELDQMEEDQDLHLYYSLMEFRHNLML 66

Query: 177 D---------LKFVQSLLDMMSGIVDSLKDDEPLLDAI-LLHMGSMYSTLENYEKSMLVY 226
           +         ++    L D++  I         LL+       G        Y  ++  +
Sbjct: 67  EYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126

Query: 227 QRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL 286
           ++  + L   + K  I        M++    + +   +++   +   I +      +  L
Sbjct: 127 KKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK-EHEAYNIRL 183

Query: 287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE 346
           +       + F+   +  DA S F +   +      +    +G  + ++   K +    E
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYE 241

Query: 347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY 406
           +A+  +K+A+ V ++SN +             + ++ + +G+  +  E   + +  ++K 
Sbjct: 242 DAIPYFKRAIAVFEESNILPSLPQAYFL----ITQIHYKLGKIDKAHEYHSKGMAYSQKA 297

Query: 407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
               + S    L +L  S    +        L   +         D +  +   + +   
Sbjct: 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY------ADLEDFA---IDVAKY 348

Query: 467 LYHLNRDKEAEKLVLEALYIREIAFGKDSL 496
            +     ++A    L+   +R++  G  SL
Sbjct: 349 YHERKNFQKASAYFLKVEQVRQLIQGGVSL 378

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 78.1 bits (192), Expect = 1e-15
 Identities = 38/338 (11%), Positives = 93/338 (27%), Gaps = 20/338 (5%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
            ++ +          +     N +++  + +     LE          + +   + +VL 
Sbjct: 8   REDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVATSVLGEVLH 64

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G   +++ +  +   +    +       +  L     +   +G    A     +  ++
Sbjct: 65  CKGELTRSLALMQQTEQMAR--QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR 376
             + + E        +   A    A    +EA    +  + V+                 
Sbjct: 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-----YQPQQQLQCL 177

Query: 377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAE 435
             L +     G     R  L     +     GK H  ++++   +   Y +   +   A 
Sbjct: 178 AMLIQCSLARGDLDNARSQLNRLENLLG--NGKYHSDWISNANKVRVIYWQMTGDKAAAA 235

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
             LR       K    ++  +     ++      L   + AE ++ E             
Sbjct: 236 NWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291

Query: 496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE 533
           L     L  L  +  + G        +L   L++  R 
Sbjct: 292 LN--RNLLLLNQLYWQAGRKS-DAQRVLLDALKLANRT 326

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 72.3 bits (177), Expect = 8e-14
 Identities = 39/232 (16%), Positives = 71/232 (30%), Gaps = 14/232 (6%)

Query: 331 AMCSLAHAKCAN--GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR 388
           A  +   A+ A   GN +EA  L K AL  +    + S    +  ++   L E+LH  G 
Sbjct: 14  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS--RIVATSV---LGEVLHCKGE 68

Query: 389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT 448
                 L+++   +  ++        +  L+  +           A         ++ + 
Sbjct: 69  LTRSLALMQQTEQMARQHD--VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 126

Query: 449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI 508
                    F +      L+   R  EAE      + +      +  L     L  L+  
Sbjct: 127 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAMLIQC 183

Query: 509 QTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEE 560
               G+ D      L R+  +        S+ +    K  V Y    G K  
Sbjct: 184 SLARGDLD-NARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAA 233

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 70.4 bits (172), Expect = 5e-13
 Identities = 57/409 (13%), Positives = 145/409 (35%), Gaps = 32/409 (7%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
           + G    A++ L+   E ++++ +A    I  +      A  Y ++G L  VQ  +D + 
Sbjct: 63  LKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121

Query: 190 GIV-DSLKDDEPLLDAILLHMGS--MYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT 246
            +              +    G   +       E++ + +++ +   + +  + +  L  
Sbjct: 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAI 180

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           +       L +   ++ A++   + I    LN   +    VL    L  +  +  +  + 
Sbjct: 181 ASY----RLDNWPPSQNAIDPLRQAI---RLNPDNQYL-KVLLALKLHKMREEGEEEGEG 232

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--Y 364
           E +    L+    V           + S A         ++A+EL KKAL  I ++   +
Sbjct: 233 EKLVEEALEKAPGVT--------DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS 424
             +       +   +    + +   ++  EL+   +   +K   + + +       LA+ 
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EANDNLFRVCSILASL 343

Query: 425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL-YHLNRDKEAEKLVLEA 483
           ++ +  + EAE   +               +     L  G    Y +  + +A    +E 
Sbjct: 344 HALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 484 LYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER 532
           + I + +  K+ +   + L  +  ++      D++ L +L  +  + E+
Sbjct: 399 VKINQKSREKEKM--KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 17/185 (9%)

Query: 296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA 355
           L   E    D E       K++ +   +N          LA+ K   G  E A+E  +KA
Sbjct: 24  LMEGENSLDDFED------KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77

Query: 356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV 415
             +I+  +    +   +     + A + + +GR  + +  +++   + EK+         
Sbjct: 78  EELIQQEHADQAEIRSLVTW-GNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 416 THLLNLAASYSR--SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD 473
                   +  +        A+      L+       P +   +     L I  Y L+  
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS---GLAIASYRLDNW 188

Query: 474 KEAEK 478
             ++ 
Sbjct: 189 PPSQN 193

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 30/174 (17%)

Query: 201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR 260
           +++     M      LE    ++   ++                      +A +     +
Sbjct: 298 VMNLRENGMYGKRKLLELIGHAVAHLKKADE-ANDNL-------FRVCSILASLHALADQ 349

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTK 319
            ++A   + +  +  EL          L     G+  + + K  D A   F   +KI  K
Sbjct: 350 YEEAEYYFQKEFS-KELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 320 VYG----------------ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                                +G    A+  LA  +  N   ++A E  ++ L 
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 5e-12
 Identities = 86/624 (13%), Positives = 190/624 (30%), Gaps = 177/624 (28%)

Query: 73  LEVDTEDQKHH---LSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMI 129
           ++ +T + ++    + S F   + F  +    D        + D  + +L    E+  +I
Sbjct: 7   MDFETGEHQYQYKDILSVFE--DAFVDNFDCKD--------VQDMPKSILSK-EEIDHII 55

Query: 130 MMGN--------------KNDAI------DLLQANYEAVKEQINAGNKG--------IEE 161
           M  +              K + +      ++L+ NY+ +   I    +         IE+
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 162 VAIL----DIIALGYVYIGD--LKFVQSLLDM----------MSGI------VDSLKDDE 199
              L     + A   V      LK  Q+LL++          + G       +D     +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 200 PLL-----------------DAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTS 241
                               + +L  +  +   ++ N+         +   + S   +  
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 242 ILL-----VTSLLGMAKVLGSIGRAK--KAVEIYHRVITILELNRGTESADLV------- 287
            LL        LL    VL ++  AK   A  +  +   IL   R  +  D +       
Sbjct: 236 RLLKSKPYENCLL----VLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTH 288

Query: 288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTK-----VYGENDGRVGMAMCSLAHAKCAN 342
           + L         +    + +S+  + L    +     V   N  R+ +   S+       
Sbjct: 289 ISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 343 GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA----------ELLHIV---GRG 389
            N +       K   +I+ S    L+ +    M   L+           LL ++      
Sbjct: 345 DNWKHV--NCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 390 QEGRELLEEC---LLITEKYKGKEHPSFVTHLLNLAASYSRS--------KNFVEAERLL 438
            +   ++ +     L+ ++ K          + ++               ++ V+   + 
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVL-EALYIREIAFGKDSL- 496
           +   D         DQ       H+G   +HL   +  E++ L   +++ +  F +  + 
Sbjct: 457 K-TFDSDDLIPPYLDQYFYS---HIG---HHLKNIEHPERMTLFRMVFL-DFRFLEQKIR 508

Query: 497 PVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLG 556
               A +   SI   L +     L+  K  +   + ++           + V + LD L 
Sbjct: 509 HDSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYE----------RLVNAILDFLP 553

Query: 557 RKEEKFPLKKRLSNLRMKYKQKVQ 580
           + EE          +  KY   ++
Sbjct: 554 KIEENL--------ICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 26/202 (12%), Positives = 61/202 (30%), Gaps = 59/202 (29%)

Query: 53  IPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSAPNDFARSK-TLHDHSSNL---W 108
           IP   +   W          ++ D     + L            S  ++      L    
Sbjct: 387 IPTILLSLIWF-------DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 109 DGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQI-----NAGNKGIEEVA 163
           +      R +++ +N  K+     + +D I      Y      I     N  +   E + 
Sbjct: 440 ENEYALHRSIVDHYNIPKTF----DSDDLIPPYLDQY--FYSHIGHHLKNIEH--PERMT 491

Query: 164 ILDIIALGYVYIGDLKFVQ-------SLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL 216
           +  ++ L      D +F++       +  +    I+++L+                   L
Sbjct: 492 LFRMVFL------DFRFLEQKIRHDSTAWNASGSILNTLQQ------------------L 527

Query: 217 ENYEKSML----VYQRVINVLE 234
           + Y+  +      Y+R++N + 
Sbjct: 528 KFYKPYICDNDPKYERLVNAIL 549

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 28/212 (13%), Positives = 58/212 (27%), Gaps = 11/212 (5%)

Query: 303 AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
           A +A        +    +   +      A   L +        +EA   ++   +  + S
Sbjct: 2   AFEAHDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS 59

Query: 363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA 422
                D +        +  +  + G     R    E   +      ++  +   +   +A
Sbjct: 60  G----DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVA 114

Query: 423 ASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE 482
                  +   A +     L    +    D  +I+     LG          EA++  L 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172

Query: 483 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGE 514
           A  I       DS  V E +  L  ++     
Sbjct: 173 ARDIFA-ELE-DSEAVNELMTRLNGLEHHHHH 202

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 18/162 (11%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
                       +G +Y+ ++ ++++   +Q +    +     T+     +L  +  V  
Sbjct: 20  AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVER 77

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
             G    A   +     +L  +   +        + + ++ +  G    A   + + L  
Sbjct: 78  MAGNWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             +   ++   +  A   L        N  EA + + +A  +
Sbjct: 137 AQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI- 274
            +               L             +   +  V   + R  +A   +  +    
Sbjct: 6   HDYALAERQAQAL----LAHPAT-----ASGARFMLGYVYAFMDRFDEARASFQALQQQA 56

Query: 275 --LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAM 332
                +     A     L  +G +    G    A   F    ++   +  E+        
Sbjct: 57  QKSGDHTAEHRA-----LHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANA 110

Query: 333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEG 392
             +A      G+   A + Y+K+L   + ++    D   +      L +L        E 
Sbjct: 111 YEVATVALHFGDLAGARQEYEKSLVYAQQAD----DQVAIACAFRGLGDLAQQEKNLLEA 166

Query: 393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF 431
           ++       I  +   ++  +    +  L        + 
Sbjct: 167 QQHWLRARDIFAEL--EDSEAVNELMTRLNGLEHHHHHH 203

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 44/269 (16%), Positives = 77/269 (28%), Gaps = 42/269 (15%)

Query: 209 MGSMYSTLEN-YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           +G  Y  + +  E +     +    LE  YG        + +             +A+  
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATT-LEKTYGP-------AWIAYGHSFAVESEHDQAMAA 147

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           Y     +             LP+  +G  +     +  AE  FS+ L I           
Sbjct: 148 YFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APE 191

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
               M  +      NG  + A + +  AL  IK        D   E +  +L  +   + 
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-WEPLLNNLGHVCRKLK 250

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           +  E  +   + L++         P   +    +   +S   NF  A       L +   
Sbjct: 251 KYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299

Query: 448 TVGPDDQSISFPMLHLGITLYHLNRDKEA 476
               DD         LG  +     D EA
Sbjct: 300 --RRDDTFSVT---MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 31/285 (10%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +++ +   +    +++    +   V+           + +          L  + +A + 
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG--------TLVELNKANEL 75

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD-AESVFSRILKIYTKVYGE 323
             + H+++   +L          +  F++G  ++  G   + A    S+   +       
Sbjct: 76  FYLSHKLV---DLYP-----SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------- 120

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
            +   G A  +  H+       ++A+  Y  A + +    ++ +         + +    
Sbjct: 121 -EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-LMKGCHLPM---------LYIGLEY 169

Query: 384 HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD 443
            +    +       + L I         P     +  +     ++  +  AE+     L+
Sbjct: 170 GLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221

Query: 444 IMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIR 487
            +             P+L +LG     L +  EA     +AL + 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           +L++G  Y    N + +   + + ++ +              +  +  V    G  K A 
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQALS-IAPED-------PFVMHEVGVVAFQNGEWKTAE 213

Query: 266 EIYHRVITIL-ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN 324
           + +   +  +  +            L +LG +  K  K  +A     + L +        
Sbjct: 214 KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-------- 265

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV 358
             +      ++ +     GN E AV+ +  AL +
Sbjct: 266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/152 (10%), Positives = 48/152 (31%), Gaps = 18/152 (11%)

Query: 203 DAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL-GMAKVLGSIGR 260
           D  ++H +G +      ++ +   +   +  +++   + ++     LL  +  V   + +
Sbjct: 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251

Query: 261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
             +A++ + + + +                 ++G +    G   +A   F   L +    
Sbjct: 252 YAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL---- 299

Query: 321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
                     ++  L H         EA    
Sbjct: 300 ----RRDDTFSVTMLGHCIEMYIGDSEAYIGA 327

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 44/287 (15%), Positives = 92/287 (32%), Gaps = 60/287 (20%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
             ++G++Y      ++++  Y+  +  L+  +       +   + +A  L + G  + AV
Sbjct: 70  YSNLGNVYKERGQLQEAIEHYRHALR-LKPDF-------IDGYINLAAALVAAGDMEGAV 121

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
           + Y   +          + DL      LG+L    G+  +A++ + + ++    +   + 
Sbjct: 122 QAYVSALQY--------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW- 172

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL 382
                      +L     A G    A+  ++KA+  +  +   +          I+L  +
Sbjct: 173 ----------SNLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAY---------INLGNV 212

Query: 383 LHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL 442
           L                L +         P+      NLA  Y        A    R  +
Sbjct: 213 LKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

Query: 443 DIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           ++      P      FP  +  L   L       EAE     AL + 
Sbjct: 265 EL-----QPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 48/283 (16%), Positives = 97/283 (34%), Gaps = 56/283 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G++   L   E++   Y + I   +  +         +   +  V  + G    A+  
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNF-------AVAWSNLGCVFNAQGEIWLAIHH 191

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEN 324
           + + +T+          + +    +LG++  +      A + + R L +   +  V+G  
Sbjct: 192 FEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG-- 241

Query: 325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH 384
                    +LA      G  + A++ Y++A+  ++     +           +LA  L 
Sbjct: 242 ---------NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAY---------CNLANALK 282

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
             G   E  +     L +         P+    L NLA       N  EA RL R  L++
Sbjct: 283 EKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
                 P+  +      +L   L    + +EA     EA+ I 
Sbjct: 335 F-----PEFAAAHS---NLASVLQQQGKLQEALMHYKEAIRIS 369

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 7e-10
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 60/284 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           + +      + E ++  Y   +                    +  +L ++GR ++A   Y
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQ-YNPDL-------YCVRSDLGNLLKALGRLEEAKACY 158

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I            +  +   +LG +F  +G+   A   F + + +   +   Y    
Sbjct: 159 LKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY---- 206

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                   +L +        + AV  Y +AL  +  ++ +            +LA + + 
Sbjct: 207 -------INLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVH---------GNLACVYYE 249

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G      +     + +         P F     NLA +     +  EAE      L + 
Sbjct: 250 QGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 446 TKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
                P             L          +EA +L  +AL + 
Sbjct: 302 -----PT-----HADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 45/265 (16%), Positives = 96/265 (36%), Gaps = 56/265 (21%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G +++       ++  +++ +  L+  +       + + + +  VL       +AV  Y
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVT-LDPNF-------LDAYINLGNVLKEARIFDRAVAAY 226

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +++        S +  +   +L  ++ ++G    A   + R +++   +   Y    
Sbjct: 227 LRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY---- 274

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI 385
                  C+LA+A    G+  EA + Y  ALR +  ++  SL          +LA +   
Sbjct: 275 -------CNLANALKEKGSVAEAEDCYNTALR-LCPTHADSL---------NNLANIKRE 317

Query: 386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM 445
            G  +E   L  + L +         P F     NLA+   +     EA    +  + I 
Sbjct: 318 QGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369

Query: 446 TKTVGPDDQSISFPMLHLGITLYHL 470
                P          ++G TL  +
Sbjct: 370 -----PTFADAYS---NMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 60/288 (20%)

Query: 205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA 264
           +LL + S++      ++S       I                +   +  V    G+ ++A
Sbjct: 35  VLLLLSSIHFQCRRLDRSAHFSTLAIK-QNPLL-------AEAYSNLGNVYKERGQLQEA 86

Query: 265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVY 321
           +E Y   + +          D +    +L +  +  G    A   +   L+       V 
Sbjct: 87  IEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                        L +   A G  EEA   Y KA+   + +  ++           +L  
Sbjct: 139 -----------SDLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAW---------SNLGC 177

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC 441
           + +  G         E+ + +         P+F+   +NL      ++ F  A       
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 442 LDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYIR 487
           L +      P+       ++H  L    Y       A      A+ ++
Sbjct: 230 LSLS-----PN-----HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L     + G    AE    ++ +                +  L+         + +    
Sbjct: 5   LAHREYQAGDFEAAERHCMQLWRQEPDNT--------GVLLLLSSIHFQCRRLDRSAHFS 56

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
             A++        +           +L  +    G+ QE  E     L +         P
Sbjct: 57  TLAIK-QNPLLAEAY---------SNLGNVYKERGQLQEAIEHYRHALRL--------KP 98

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR 472
            F+   +NLAA+   + +   A +     L        PD   +      LG  L  L R
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQY-----NPDLYCV---RSDLGNLLKALGR 150

Query: 473 DKEAEKLVLEALYIR 487
            +EA+   L+A+  +
Sbjct: 151 LEEAKACYLKAIETQ 165

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 35/242 (14%), Positives = 66/242 (27%), Gaps = 46/242 (19%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            + +A      G  + A     ++             D    L  L S+  +  +   + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQ--------EPDNTGVLLLLSSIHFQCRRLDRSA 53

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              +  +K    +          A  +L +     G  +EA+E Y+ ALR +K       
Sbjct: 54  HFSTLAIKQNPLLA--------EAYSNLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGY 104

Query: 368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR 427
                    I+LA  L   G  +   +     L          +P       +L      
Sbjct: 105 ---------INLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVRSDLGNLLKA 147

Query: 428 SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALY 485
                EA+      ++       P+     F +    LG           A     +A+ 
Sbjct: 148 LGRLEEAKACYLKAIET-----QPN-----FAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 486 IR 487
           + 
Sbjct: 198 LD 199

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 49/377 (12%), Positives = 107/377 (28%), Gaps = 63/377 (16%)

Query: 131 MGNKNDAIDLLQA-------NYEAVKEQI-NAGNKGIEEVAILDIIALGYVYIGDLKFVQ 182
           + N + A +  +         YEA  + + N      EE  ++  +        D  F++
Sbjct: 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272

Query: 183 SLLDMMSGIVDSLKDDEPLLDA------------ILLHMGSMYSTLENYEKSMLVYQRVI 230
           SL  +         +     D             +LL           +   + +  +++
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332

Query: 231 NVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL 290
            +            +         L   G   K   I + ++   + +      +  +  
Sbjct: 333 EIDPYN--------LDVYPLHLASLHESGEKNKLYLISNDLV---DRHP-----EKAVTW 376

Query: 291 FSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE 350
            ++G  ++   K  +A   FS+   +        D + G A    AH+    G  ++A+ 
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAIS 428

Query: 351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE 410
            Y  A R +    ++           + L      +G      E L+    +        
Sbjct: 429 AYTTAAR-LFQGTHLPY---------LFLGMQHMQLGNILLANEYLQSSYAL-------- 470

Query: 411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL 470
                  L  L        +   A    +  L ++ KT   +    +    +LG     L
Sbjct: 471 FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA-TWANLGHAYRKL 529

Query: 471 NRDKEAEKLVLEALYIR 487
                A   + + L + 
Sbjct: 530 KMYDAAIDALNQGLLLS 546

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 85/293 (29%), Gaps = 44/293 (15%)

Query: 195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV 254
           L+ D   LD   LH  +         K  L+   +++               + L +   
Sbjct: 332 LEIDPYNLDVYPLH-LASLHESGEKNKLYLISNDLVD-RHPEK-------AVTWLAVGIY 382

Query: 255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL 314
              + +  +A   + +      ++     A            F  EG+   A S ++   
Sbjct: 383 YLCVNKISEARRYFSKSS---TMDPQFGPA-----WIGFAHSFAIEGEHDQAISAYTTAA 434

Query: 315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN 374
           +++   +        +    L       GN   A E  + +   +   + + L       
Sbjct: 435 RLFQGTH--------LPYLFLGMQHMQLGNILLANEYLQSSYA-LFQYDPLLL------- 478

Query: 375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEA 434
              +L  +       Q      +  LL+ +K        +     NL  +Y + K +  A
Sbjct: 479 --NELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAA 535

Query: 435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
              L   L +       +D ++      + +   H      A   + E+L I 
Sbjct: 536 IDALNQGLLL-----STNDANVHT---AIALVYLHKKIPGLAITHLHESLAIS 580

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 44/395 (11%), Positives = 110/395 (27%), Gaps = 86/395 (21%)

Query: 189 SGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVIN---------------- 231
           +     ++D    L+A + +  G +Y+ L N++++   Y+  +                 
Sbjct: 185 NANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244

Query: 232 ----------VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT 281
                     VL+  Y   S      L  +  +  +    +  +      ++ +      
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE-- 302

Query: 282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA 341
           +S+DL   L           + +D  ++ ++IL+I      +              +   
Sbjct: 303 KSSDL---LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLD-------VYPLHLASLHE 351

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
           +G   +   +    +        ++          + +      V +  E R    +   
Sbjct: 352 SGEKNKLYLISNDLVD-RHPEKAVTW---------LAVGIYYLCVNKISEARRYFSKSST 401

Query: 402 ITEKY------KG------KEH--------------PSFVTHLLNLAASYSRSKNFVEAE 435
           +  ++               EH                     L L   + +  N + A 
Sbjct: 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

Query: 436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS 495
             L+    +        D      +  LG+  ++ +  + A      AL + +     + 
Sbjct: 462 EYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513

Query: 496 LPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ 530
            P       L     +L   D   ++ L + L + 
Sbjct: 514 -PWAATWANLGHAYRKLKMYD-AAIDALNQGLLLS 546

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 24/195 (12%), Positives = 64/195 (32%), Gaps = 13/195 (6%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESV 309
            A    +  + ++A + Y +             +A         G +     +  +A   
Sbjct: 42  AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKA---FEQAGMMLKDLQRMPEAVQY 98

Query: 310 FSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD 369
             +   +Y +    +     MA+           +  +AV LY++A  V ++   +    
Sbjct: 99  IEKASVMYVENGTPD--TAAMALDRAGKL-MEPLDLSKAVHLYQQAAAVFENEERLRQAA 155

Query: 370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK 429
            ++       + LL    +  E    L++   + ++ +   +P+     +          
Sbjct: 156 ELIGKA----SRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRA 209

Query: 430 NFVEAERLLRICLDI 444
           ++V A++ +R    I
Sbjct: 210 DYVAAQKCVRESYSI 224

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 17/239 (7%)

Query: 130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMS 189
                  A D      +  +   N  +         +   +    +  +      ++  S
Sbjct: 48  NAKQLEQAKDAYL---QEAEAHANNRSL-FHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS 103

Query: 190 GIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL 249
            +   +++  P   A+ L          +  K++ +YQ+   V E+            + 
Sbjct: 104 VM--YVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQA--AELIG 159

Query: 250 GMAKVLGSIGRAKKAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAES 308
             +++L    +  +A     +  ++  E+              +   + +     V A+ 
Sbjct: 160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK---CIAQVLVQLHRADYVAAQK 216

Query: 309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
                      + G +      A+  L  A     + E+ + + +  L    D++Y  L
Sbjct: 217 CVRE----SYSIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRVCRSPLVTYMDNDYAKL 270

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDD-----SIMENMRIDLAELLHIVGRGQEGREL 395
           A     EA E   KA + +K S      D     S         A       + ++ ++ 
Sbjct: 3   AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA----AVAFKNAKQLEQAKDA 58

Query: 396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS 455
             +        +   H +               +   EA + +     +  +   PD  +
Sbjct: 59  YLQEAEAHANNRSLFHAA--KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116

Query: 456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED 515
           ++   L     L       +A  L  +A  + E    +      E +     +  R  + 
Sbjct: 117 MA---LDRAGKLMEPLDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKF 171

Query: 516 DTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK 554
           D +    L++   + + E  +        + +V+  L +
Sbjct: 172 D-EAAASLQKEKSMYK-EMENYPTCYKKCIAQVLVQLHR 208

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK 263
               ++G+ +  L N+  +++ +++ + + +    K +     +   +      +G  + 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYIFLGEFET 67

Query: 264 AVEIYHRVITILELNRGT-ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG 322
           A E Y +    L L R   + A      +SLG+ +        A     + L I  ++  
Sbjct: 68  ASEYYKKT---LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
                 G A  SL +A  A GN ++A+   +K L + ++
Sbjct: 125 RIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 322 GENDGRVGMAMC--SLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
           G    R        +L +     GN  +AV  +++ L + K+    + +     N    L
Sbjct: 1   GPGS-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSN----L 55

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
                 +G  +   E  ++ LL+  + K            +L  +Y+  +++ +A     
Sbjct: 56  GNAYIFLGEFETASEYYKKTLLLARQLKD--RAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE 488
             L I  +      +  +     LG     L    +A     + L I  
Sbjct: 114 KHLAIAQELKDRIGEGRAC--WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
             +LG+     G   DA     + L I  +   +      +A  +L +A    G  E A 
Sbjct: 12  FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--ERIAYSNLGNAYIFLGEFETAS 69

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E YKK L + +     +++     +    L     ++   ++  +   + L I ++ K  
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYS----LGNTYTLLQDYEKAIDYHLKHLAIAQELK-- 123

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
           +         +L  +Y+   N  +A       L+I  +
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 17/158 (10%)

Query: 170 LGYVY--IGD----LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSM 223
           LG  +  +G+    +   +  L +          D+        ++G+ Y  L  +E + 
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEF-----GDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 224 LVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT-E 282
             Y++ + +      +       S   +      +   +KA++ + +    L + +   +
Sbjct: 70  EYYKKTLLLARQLKDRAVE--AQSCYSLGNTYTLLQDYEKAIDYHLKH---LAIAQELKD 124

Query: 283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV 320
                   +SLG+ +   G    A     + L+I  +V
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 45/291 (15%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVI----NVLESRYGKTSILLVTSL---LGM 251
           +    A  L  G +       +++   +++V+    +  E +  ++ ++    +      
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A           A+    +++ +                      FIKEG+   A S   
Sbjct: 127 ALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN---YM 365
              K+    T+ +             ++      G+ E ++   ++ L+ +   +   + 
Sbjct: 179 AASKLKSDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLK-LDQDHKRCFA 226

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
                   N  I+ AE L   GR  +     E  +    K +       V     +   +
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSVAEYTVRSKERICHCF 282

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           S+ +  VEA R+    L +      PD+      +              EA
Sbjct: 283 SKDEKPVEAIRICSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 325

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 43/298 (14%), Positives = 84/298 (28%), Gaps = 57/298 (19%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
            L +G           ++  +   ++  +            +    A V  ++G++K A+
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVD-GDPDN-------YIAYYRRATVFLAMGKSKAAL 57

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
               +VI    L     +A         G L +K+GK  +AE  F ++LK      +   
Sbjct: 58  PDLTKVI---ALKMDFTAA-----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK- 108

Query: 323 ENDGRVGMAMCSLAHAKCA-----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
           E + ++  A         A       +   A+    K L V        L        R 
Sbjct: 109 EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVWDAEL--------RE 158

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
             AE     G  ++    L+           K           ++  Y +  +   +   
Sbjct: 159 LRAECFIKEGEPRKAISDLKAAS--------KLKSDNTEAFYKISTLYYQLGDHELSLSE 210

Query: 438 LRICLDIMTKTVGPDDQS---------ISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           +R CL +       D +              ++     L    R  +A       +  
Sbjct: 211 VRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 33/275 (12%), Positives = 79/275 (28%), Gaps = 44/275 (16%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 174

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                   +         +D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 175 SDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 225

Query: 323 ENDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V     +   A     +G   +A   Y+  ++   + +         E     + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKER----IC 279

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE 475
             +        +DQ I      L      L + ++
Sbjct: 332 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 43/246 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
             L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+  A
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSKAA 56

Query: 307 ESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-- 361
               ++++ +   +T                  H     G  +EA + +KK L+      
Sbjct: 57  LPDLTKVIALKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 362 ---SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
                   L  +         A               L++ L +                
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELR 157

Query: 419 LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK 478
              A  + +     +A   L+    +       D+   +     +    Y L   + +  
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLK-----SDN---TEAFYKISTLYYQLGDHELSLS 209

Query: 479 LVLEAL 484
            V E L
Sbjct: 210 EVRECL 215

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 3/119 (2%)

Query: 390 QEGRELLEECLLITEKYKGKEHPSFVTHL---LNLAASYSRSKNFVEAERLLRICLDIMT 446
           +   ELLE C L  EK       S V  L             +++  A +  +  +   +
Sbjct: 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL 505
           K       +++   L LG     L      EK + +A+ I E+A GKD   + E    +
Sbjct: 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 14/106 (13%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L+  +   + MS +    +D    +  ++     +   ++++E ++   Q++I      Y
Sbjct: 318 LEICELSQEKMSSV---FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY 374

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
              S+ + +  L + ++   +       +   + I I+E+  G + 
Sbjct: 375 PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +  E +E+ + +    K S+     +  M +M      +   +   +   +  ++ + 
Sbjct: 311 YKSPSELLEICELSQE--KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
              K+      +  +  L L   Y   +N    E+ L+  + IM    G D
Sbjct: 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD 419

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 14/104 (13%), Positives = 32/104 (30%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                 + +EI       +       +  ++  ++    + +       A     +I+K 
Sbjct: 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP 369

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           Y+K Y      V      L        N     +  KKA+ +++
Sbjct: 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 41/234 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +       G  ++A     + +   E++             +L  +F  E +   A+  +
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKAL---EID-----PSSADAHAALAVVFQTEMEPKLADEEY 94

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            + L          D R    + +           EEA +   +A +             
Sbjct: 95  RKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER----SR 142

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
           + EN+ +   ++     +  + +E  E+ L +        + +  +  L +A    + + 
Sbjct: 143 VFENLGLVSLQM----KKPAQAKEYFEKSLRL--------NRNQPSVALEMADLLYKERE 190

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL 484
           +V A +   +         G      +   L LGI L  +  D++        L
Sbjct: 191 YVPARQYYDLFAQG-----GGQ----NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 22/154 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +  ++ T    + +   Y++ +   +SR  +        L      L    R ++A +  
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALA-SDSRNARV-------LNNYGGFLYEQKRYEEAYQRL 128

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV 328
                   L              +LG + ++  K   A+  F + L++        +   
Sbjct: 129 LEASQDT-LYPERSRV-----FENLGLVSLQMKKPAQAKEYFEKSLRL--------NRNQ 174

Query: 329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS 362
                 +A           A + Y    +    +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 40/240 (16%), Positives = 67/240 (27%), Gaps = 47/240 (19%)

Query: 293 LGSLFIKEGKAVDAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           LG  +++ G    A+    + L+I       +            +LA         + A 
Sbjct: 43  LGLGYLQRGNTEQAKVPLRKALEIDPSSADAH-----------AALAVVFQTEMEPKLAD 91

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E Y+KAL      N   L+     N    L E      R +E  + L E    T      
Sbjct: 92  EEYRKALA-SDSRNARVLN-----NYGGFLYEQ----KRYEEAYQRLLEASQDTLY---- 137

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
             P       NL     + K   +A+      L +       +  S     L +   LY 
Sbjct: 138 --PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-----NRNQPS---VALEMADLLYK 187

Query: 470 LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI 529
                 A        Y      G  +     +L   + +     + D        ++ R+
Sbjct: 188 EREYVPA-----RQYYDLFAQGGGQNA---RSLLLGIRLAKVFEDRD-TAASYGLQLKRL 238

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 55.7 bits (133), Expect = 2e-08
 Identities = 26/168 (15%), Positives = 56/168 (33%), Gaps = 3/168 (1%)

Query: 339 KCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE 398
            C  G  ++     K+  +  ++     +  S     +ID A    +     E  +L  E
Sbjct: 278 HCQKGLKDDLFLAAKEDPKPSQEVVKEMIQFSKDTLEKIDKARSEGLY---HEVVKLCRE 334

Query: 399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF 458
           CL   E      +   +  L   +   S  + + EA    R  +D   K    ++  +  
Sbjct: 335 CLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394

Query: 459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV 506
            ++  G+T +H    +    ++ +A  I  +  G       +     +
Sbjct: 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRM 442

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 9/162 (5%)

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
           S G   + V++    +   E      +  ++  L     +        +A     R++  
Sbjct: 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG 380

Query: 317 YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI-----KDSNYMSLDDSI 371
           Y K+Y  N+ ++GMA+          G+ E    +  KA  ++                 
Sbjct: 381 YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KD 436

Query: 372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS 413
           +E MR+     L +  + +     + E  L  +  +    PS
Sbjct: 437 LEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMAEPS 478

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 33/195 (16%), Positives = 70/195 (35%), Gaps = 34/195 (17%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L +L ++  ++G   +A  ++ + L++              A  +LA      G  +EA+
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
             YK+A+R+     +         +   ++   L  +   Q   +     + I       
Sbjct: 64  MHYKEAIRI--SPTFA--------DAYSNMGNTLKEMQDVQGALQCYTRAIQI------- 106

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
            +P+F     NLA+ +  S N  EA    R  L +      PD         +L   L  
Sbjct: 107 -NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDA---YCNLAHCLQI 157

Query: 470 LNRDKEAEKLVLEAL 484
           +    + ++ + + +
Sbjct: 158 VCDWTDYDERMKKLV 172

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 26/157 (16%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ 390
           ++ +LA+ K   GN EEAV LY+KAL V     +             +LA +L   G+ Q
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFA--------AAHSNLASVLQQQGKLQ 60

Query: 391 EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVG 450
           E     +E + I         P+F     N+  +    ++   A +     + I      
Sbjct: 61  EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----N 107

Query: 451 PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           P          +L           EA      AL ++
Sbjct: 108 PAFADA---HSNLASIHKDSGNIPEAIASYRTALKLK 141

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 24/173 (13%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
            P   A   ++ S+       +++++ Y+  I  +   +         +   M   L  +
Sbjct: 39  FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPTF-------ADAYSNMGNTLKEM 90

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
              + A++ Y R I I        +        +L S+    G   +A + +   LK+  
Sbjct: 91  QDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
                       A C+LAH      +  +  E  KK + ++ D    +   S+
Sbjct: 141 ------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSV 187

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 43/380 (11%), Positives = 106/380 (27%), Gaps = 57/380 (15%)

Query: 117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG 176
           Q+L     + S   + + +  +  +  +           +  ++    L         + 
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNY-DTAYALLSDALQ---RLYSATDEGYLVA 214

Query: 177 DLKFVQSLLDMMSGIVDSLKDDE--PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE 234
           +    +S     S +  +  DD         L + G  +    N   + ++ Q  IN L 
Sbjct: 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LH 273

Query: 235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG 294
                       S + +A  L     +++  + + + +   +LN   E        +  G
Sbjct: 274 PTP--------NSYIFLALTLADKENSQEFFKFFQKAV---DLNP--EYPPT---YYHRG 317

Query: 295 SLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKK 354
            ++       +A+  F +   +  +               LA      G   E+   + +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENV--------YPYIQLACLLYKQGKFTESEAFFNE 369

Query: 355 ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG------ 408
                K           +       AE+L   G      +  +    + E  +       
Sbjct: 370 TKL--KFPTL-----PEVPTFF---AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 409 --KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT 466
                 + +    +   +    + F  A +LL    ++        D       + L   
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--------DPRSEQAKIGLAQL 471

Query: 467 LYHLNRDKEAEKLVLEALYI 486
              + +  EA +L  ++  +
Sbjct: 472 KLQMEKIDEAIELFEDSAIL 491

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 47/317 (14%), Positives = 95/317 (29%), Gaps = 50/317 (15%)

Query: 194 SLKDDEPLLDAILLH-MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA 252
            L   +    A+ L   G+ + T +N+ +++  YQ  I  L+                ++
Sbjct: 15  GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE-LDPNE-------PVFYSNIS 66

Query: 253 KVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSR 312
               S G  +K +E   + +   E+       D    L    S     G   DA    S 
Sbjct: 67  ACYISTGDLEKVIEFTTKAL---EIK-----PDHSKALLRRASANESLGNFTDAMFDLSV 118

Query: 313 I-----------------------LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           +                       +K+  +   +++GR    + S        G  +  +
Sbjct: 119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           E+         D+ Y  L D++           L       +  ++    L         
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDP 237

Query: 410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH 469
              +    L      +    N ++A+ LL+  +++      P   S       L +TL  
Sbjct: 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPTPNSYI----FLALTLAD 288

Query: 470 LNRDKEAEKLVLEALYI 486
               +E  K   +A+ +
Sbjct: 289 KENSQEFFKFFQKAVDL 305

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 52/417 (12%), Positives = 113/417 (27%), Gaps = 69/417 (16%)

Query: 81  KHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDL 140
           K  +S       D   +       S         +++ L     + S   +         
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 141 LQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE- 199
              + EA KE +N  +        L   +       D  F ++       +  + +D++ 
Sbjct: 180 YDESNEADKELMNGLSN-------LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232

Query: 200 -PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI 258
              L   L H G       +   +    ++ I  L  R          S + MA ++   
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRV--------NSYIYMALIMADR 283

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
             + +    + + +   +L+    ++ +    +  G +         A   F +  ++  
Sbjct: 284 NDSTEYYNYFDKAL---KLDS--NNSSV---YYHRGQMNFILQNYDQAGKDFDKAKEL-- 333

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                 D         LA         ++   L+ +A R  K              +   
Sbjct: 334 ------DPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEA--------PEVPNF 377

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS---------K 429
            AE+L       +  +  +  + +                + +A    ++         +
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIEL--------ENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 430 NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
           NF+EA  LL     +        D       + L           EA  L  E+  +
Sbjct: 430 NFIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 35/287 (12%), Positives = 81/287 (28%), Gaps = 38/287 (13%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           +L        +   ++                 + S           + L S+       
Sbjct: 113 MLERNLNKQAMSKLKEKFGDIDTATATPT----ELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV----- 320
            I+   +T    +   E AD  L                 A+  F++  +++ +      
Sbjct: 169 GIFKPELTFANYDESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 321 -YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              +   ++ +++      K    +   A E  KKA+ +       S          I +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSY---------IYM 276

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A ++       E     ++ L +          +  +   +        +N+ +A +   
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
              ++      P++    FP + L    Y  N+  + E L  EA   
Sbjct: 329 KAKEL-----DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRK 367

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 43/290 (14%)

Query: 199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVIN-------VLESRYGKTSILLVTSLLGM 251
           +    A  L  G +       +++   +++V+          E++        +  L   
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFS 311
           A      G    A+    +++ +                      FIKEG+   A S   
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLK 201

Query: 312 RILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN--YMS 366
              K+    T+ +             ++      G+ E ++   ++ L++ +D    +  
Sbjct: 202 AASKLKNDNTEAF-----------YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 250

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
                  N  I+ AE L   GR  +     E  +    K +       V     +   +S
Sbjct: 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVM----KTEPSIAEYTVRSKERICHCFS 306

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
           + +  VEA R+    L +      PD+      +              EA
Sbjct: 307 KDEKPVEAIRVCSEVLQME-----PDN---VNALKDRAEAYLIEEMYDEA 348

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 33/276 (11%), Positives = 79/276 (28%), Gaps = 44/276 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAV 265
           L           +Y  ++    +++  +                  A+     G  +KA+
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILE-VCVWD-------AELRELRAECFIKEGEPRKAI 197

Query: 266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYG 322
                   +          D     + + +L+ + G    + S     LK+   + + + 
Sbjct: 198 SDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF- 248

Query: 323 ENDGRVGMAMCSLAHAKCA--NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
            +  +V      +  A+    +G   +A   Y+  ++   + +         E     + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKER----IC 302

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                  +  E   +  E L +         P  V  L + A +Y   + + EA +    
Sbjct: 303 HCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
             +        +DQ I      L      L + ++ 
Sbjct: 355 AQEHN-----ENDQQIRE---GLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 35/250 (14%), Positives = 74/250 (29%), Gaps = 43/250 (17%)

Query: 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304
           V   L + K L + G+   A+  +H  +   + +      D  +  +   ++F+  GK+ 
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAV---DGD-----PDNYIAYYRRATVFLAMGKSK 77

Query: 305 DAESVFSRILKI---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD 361
            A    ++++++   +T                  H     G  +EA + +KK L+    
Sbjct: 78  AALPDLTKVIQLKMDFTAAR-----------LQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 362 S-----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVT 416
                     L  S         A      G        L++ L +              
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--------VWDAE 178

Query: 417 HLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA 476
                A  + +     +A   L+    +       D+   +     +    Y L   + +
Sbjct: 179 LRELRAECFIKEGEPRKAISDLKAASKLK-----NDN---TEAFYKISTLYYQLGDHELS 230

Query: 477 EKLVLEALYI 486
              V E L +
Sbjct: 231 LSEVRECLKL 240

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 4/127 (3%)

Query: 387 GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT 446
            + ++   + +  +    +     +   +  L     +        EA       ++   
Sbjct: 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 360

Query: 447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEAL---- 502
                        ++ +G    H     +A K +  A  I  +  G++   + + +    
Sbjct: 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420

Query: 503 DCLVSIQ 509
           +C  +I+
Sbjct: 421 ECDANIR 427

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 48.3 bits (114), Expect = 4e-06
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           A+   E+ + + +  +    +S  +   +     +     +    +G  +E        +
Sbjct: 299 AHWKWEQVLAMCQAIIS--SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD 452
                +    HP     ++ +         F +A + LR+  DIM  T G +
Sbjct: 357 EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY 237
           L   Q+++   S     L D       +L         L   E+++    R +      +
Sbjct: 307 LAMCQAIISSNSER---LPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363

Query: 238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES 283
             +  +    ++ + K+    G   +A++       I+ +  G E 
Sbjct: 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 14/116 (12%), Positives = 42/116 (36%)

Query: 245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV 304
           V   L   + L +  + ++ + +   +I+         +   +  L       I  G   
Sbjct: 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLE 346

Query: 305 DAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
           +A    +R ++ Y   +  +    G+ +  +   +   G   +A++  + A  +++
Sbjct: 347 EALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 24/164 (14%), Positives = 57/164 (34%), Gaps = 23/164 (14%)

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           ++  +  +   +   +   Y    NY+K+ L Y+ ++              V  L   A+
Sbjct: 45  NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-KAPNN-------VDCLEACAE 96

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
           +    G+ K A+ +Y +++   +L     +A        LG+ +    +    +      
Sbjct: 97  MQVCRGQEKDALRMYEKIL---QLEADNLAA-----NIFLGNYYYLTAEQEKKK------ 142

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
           L+   K    +  ++  A      +K      E+A    +K + 
Sbjct: 143 LETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 206 LLHMGSMYSTLENYEKSMLVYQRVINV--------LESRYGKTSILLVTSLLGMAKVLGS 257
           +L   S         +++  +++ I +          +   K S +       +A     
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY 317
                KA   Y  ++   +        + V  L +   + +  G+  DA  ++ +IL++ 
Sbjct: 67  NRNYDKAYLFYKELL---QKAP-----NNVDCLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAE-EAVELYKKALR 357
                  +     A   L +        E + +E   K L 
Sbjct: 118 -------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 35/206 (16%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITI------LELNRGTESADLVLP--LFSLGSLFIK 299
           +L         G+  +AV  + + I +      +      +    +       L   + K
Sbjct: 7   MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66

Query: 300 EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI 359
                 A   +  +L+        N+      + + A  +   G  ++A+ +Y+K L++ 
Sbjct: 67  NRNYDKAYLFYKELLQKA-----PNNVD---CLEACAEMQVCRGQEKDALRMYEKILQL- 117

Query: 360 KDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEKYKGKEHPSFVTHL 418
            +++ ++          I L    ++   + ++  E   + L                  
Sbjct: 118 -EADNLAA--------NIFLGNYYYLTAEQEKKKLETDYKKLSS--------PTKMQYAR 160

Query: 419 LNLAASYSRSKNFVEAERLLRICLDI 444
                S   +  + +A   L+  +  
Sbjct: 161 YRDGLSKLFTTRYEKARNSLQKVILR 186

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 23/163 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRI--DLAELLH 384
            M     A    G   +AV  +++ + +  D      + ++D +   + ++  +LA    
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI 444
                 +     +E L        ++ P+ V  L   A          +A R+    L +
Sbjct: 66  KNRNYDKAYLFYKELL--------QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117

Query: 445 MTKTVGPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYI 486
                  D+ +     + LG   Y    ++K+  +   + L  
Sbjct: 118 -----EADNLAA---NIFLGNYYYLTAEQEKKKLETDYKKLSS 152

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 23/146 (15%), Positives = 40/146 (27%), Gaps = 26/146 (17%)

Query: 342 NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL 401
             +    +   + A+R                   + LA+    +G    G   ++  L 
Sbjct: 2   TADGPRELLQLRAAVRH--RPQDFVA--------WLMLADAELGMGDTTAGEMAVQRGLA 51

Query: 402 ITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML 461
           +        HP     +  L       +   EA  LL+   D       P+   I    L
Sbjct: 52  L--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEHPGI---AL 95

Query: 462 HLGITLYHLNRDKEAEKLVLEALYIR 487
            LG  L    + + A      A  + 
Sbjct: 96  WLGHALEDAGQAEAAAAAYTRAHQLL 121

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 25/205 (12%), Positives = 42/205 (20%), Gaps = 37/205 (18%)

Query: 259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT 318
               + +      +               +    L    +  G     E    R L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID 378
                       A+  L   +       EA  L ++A     +         I       
Sbjct: 53  ------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE------HPGIALW---- 96

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
           L   L   G+ +           +       E P     LLN        +        +
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQV 151

Query: 439 RICLDIMTKTVGPDDQSISFPMLHL 463
           R  +      V P      F  L  
Sbjct: 152 RAAVAQGVGAVEP------FAFLSE 170

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 20/186 (10%), Positives = 42/186 (22%), Gaps = 34/186 (18%)

Query: 301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK 360
                        ++           +  +A   LA A+   G+        ++ L +  
Sbjct: 3   ADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-- 52

Query: 361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN 420
              +              L  +     R  E   LL++             P      L 
Sbjct: 53  HPGHP--------EAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALW 96

Query: 421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV 480
           L  +   +     A         ++     P++  I      L      L   +  + L 
Sbjct: 97  LGHALEDAGQAEAAAAAYTRAHQLL-----PEEPYI---TAQLLNWRRRLCDWRALDVLS 148

Query: 481 LEALYI 486
            +    
Sbjct: 149 AQVRAA 154

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)

Query: 248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAE 307
            L +A     +G          R + +               +  LG +   + +  +A 
Sbjct: 26  WLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAA 77

Query: 308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
            +  +                      L HA    G AE A   Y +A +
Sbjct: 78  VLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 18/159 (11%), Positives = 50/159 (31%), Gaps = 21/159 (13%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +GS +    N+  ++   ++ I    +               + +         KA   +
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIR-PTTTD-------PKVFYELGQAYYYNKEYVKADSSF 165

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIK---EGKAVDAESVFSRILKIYTKVYGEND 325
            +V+   EL       ++ +              + K   A+  + +++++      +  
Sbjct: 166 VKVL---ELK-----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
             +  A   +A+    N +  +A   +K  L +  D   
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 27/166 (16%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G +         ++  YQ  ++  ++         +     +     + G    A++  
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVD-RDTTR-------LDMYGQIGSYFYNKGNFPLAIQYM 131

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            + I                  + LG  +    + V A+S F ++L++       Y    
Sbjct: 132 EKQI---RPTTTDPKV-----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY-LWR 182

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI 371
            R   A          +     A   Y+K + V         D+ I
Sbjct: 183 ARANAAQDP-------DTKQGLAKPYYEKLIEVCAPGGAKYKDELI 221

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 39/314 (12%), Positives = 88/314 (28%), Gaps = 66/314 (21%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
            +G   +  E    +++        L+ +        +     +A    +   A  A+  
Sbjct: 60  SLGLTQAENEKDGLAIIALNHARM-LDPKD-------IAVHAALAVSHTNEHNANAALAS 111

Query: 268 YHRVITI------LELNRGTESADL-VLPLFSLGSLFIKEGKAVDAESVFSRILKI---Y 317
               +        L         D+  L + S    F    +  +  ++    L++    
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

Query: 318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRI 377
            +++            SL      + N + A    ++A+  ++  +    +      +  
Sbjct: 172 AQLH-----------ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWN-----KLGA 214

Query: 378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL 437
            LA       R QE  +     L I        +P +V  + N+A SYS    +  A + 
Sbjct: 215 TLANG----NRPQEALDAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262

Query: 438 LRICLDIMTKTVGPDDQSISFPMLH---------LGITLYHLNRDKEAEKLVLEALYIRE 488
           L   + +          + +                + L  +NR         E  Y + 
Sbjct: 263 LVRAIYMQ-----VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV-----ELTYAQN 312

Query: 489 IAFGKDSLPVGEAL 502
           +        +   L
Sbjct: 313 VEPFAKEFGLQSML 326

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 42/235 (17%), Positives = 70/235 (29%), Gaps = 41/235 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
               +  +    +A   +  V           + +      SLG    +  K   A    
Sbjct: 27  EGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD-----SNYM 365
           +    +        D +      +LA +     NA  A+   +  L          S  +
Sbjct: 79  NHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY 425
             D  I +                +E R LL   L +        +P+      +L   Y
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLY 182

Query: 426 SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
           + S N+  A   LR  +++      PDD       L   LG TL + NR +EA  
Sbjct: 183 NLSNNYDSAAANLRRAVELR-----PDD-----AQLWNKLGATLANGNRPQEALD 227

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG 256
           ++           G       +   ++L  +  I   +            +   +     
Sbjct: 59  ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPGD-------AEAWQFLGITQA 110

Query: 257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI 316
                + A+    R +   EL       + +  L +L   +       DA       +K 
Sbjct: 111 ENENEQAAIVALQRCL---ELQ-----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162

Query: 317 ---YTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME 373
              Y  +  +N          ++ +   +   E   ELY +A       N   +D  +  
Sbjct: 163 NPKYKYLV-KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQT 217

Query: 374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE 433
                L  L H+ G      +     L +         P   +    L A+ +      E
Sbjct: 218 G----LGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEE 265

Query: 434 AERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEKLVLEALYI 486
           A       L+I      P      F      LGI+  +L   +EA    L AL +
Sbjct: 266 AVEAYTRALEIQ-----PG-----FIRSRYNLGISCINLGAYREAVSNFLTALSL 310

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 12/184 (6%)

Query: 263 KAVEIYHRVITI-LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
            A + + +      +     E+ +           F   G +V+A       ++I+T   
Sbjct: 55  LAGDSFLKAADYQKKAGNEDEAGNT---YVEAYKCFKSGGNSVNAVDSLENAIQIFTH-- 109

Query: 322 GENDGRVGMAMCSLA-HAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA 380
                R       L    +    +  +A++ Y+ A         ++L +          A
Sbjct: 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIK----CA 165

Query: 381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
           +L  + G+  E  ++  + +            S   + L        + + V A R L+ 
Sbjct: 166 DLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224

Query: 441 CLDI 444
               
Sbjct: 225 GQSE 228

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 408 GKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL 467
           G +        L L +++     + +AE +L   +        P+ Q++    +   + L
Sbjct: 20  GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-----PNHQAL---RVFYAMVL 71

Query: 468 YHLNRDKEAEKLVLEAL 484
           Y+L R ++  +L+L+ +
Sbjct: 72  YNLGRYEQGVELLLKII 88

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK 315
           G +G   +AV  Y + I       G +  DL      LGS F   G+   AE+V +  +K
Sbjct: 1   GVLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK 55

Query: 316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL 356
            +                  A      G  E+ VEL  K +
Sbjct: 56  QFPNHQA--------LRVFYAMVLYNLGRYEQGVELLLKII 88

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 33/239 (13%), Positives = 66/239 (27%), Gaps = 43/239 (17%)

Query: 247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDA 306
           ++   A+ L S  R    V    R     E++R  +  +    L    S++  +     A
Sbjct: 67  AVRMFAEYLASHSRRDAIVAELDR-----EMSRSVDVTNTTF-LLMAASIYFYDQNPDAA 120

Query: 307 ESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS 366
                +   +               M             + A +  KK            
Sbjct: 121 LRTLHQGDSLE-------------CMAMTVQILLKLDRLDLARKELKKMQDQ-------- 159

Query: 367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS 426
            +D+ +  +      L     + Q+   + +E           +    +  L   AA + 
Sbjct: 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMA--------DKCSPTLLLLNGQAACHM 211

Query: 427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY 485
               +  AE +L+  LD                +++L +   HL +  E     L  L 
Sbjct: 212 AQGRWEAAEGVLQEALDK-----DSGHPET---LINLVVLSQHLGKPPEVTNRYLSQLK 262

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 7/206 (3%)

Query: 74  EVDTEDQKHHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGN 133
           +++ + Q             +        +     +   +F++ L   +     ++   +
Sbjct: 71  DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD 130

Query: 134 KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVD 193
               I  L+         I+      + + I + IA  Y   G LK    L + +   ++
Sbjct: 131 YEYCILELKKLLNQQLTGID----VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186

Query: 194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
           +L D+E     +  +          YE+S+    + I +       +  L+        +
Sbjct: 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGE 244

Query: 254 VLGSIGRAKKAVEIY-HRVITILELN 278
            L  +   +  +E    +     ++ 
Sbjct: 245 CLRKLEYEEAEIEDAYKKASFFFDIL 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 46/301 (15%), Positives = 87/301 (28%), Gaps = 54/301 (17%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G+  +  E    ++   +R +  L+           T+L+ +A    +    ++A EI
Sbjct: 103 YLGTTQAENEQELLAISALRRCLE-LKPDN-------QTALMALAVSFTNESLQRQACEI 154

Query: 268 YHRVITI--------LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK 319
               +               G   A L      LGSL   +   ++ + +F   +++   
Sbjct: 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPT 213

Query: 320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL 379
              + D       C L      +G  ++AV+ +  AL V    N   L       +   L
Sbjct: 214 -SIDPD-----VQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL----WNKLGATL 261

Query: 380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR 439
           A       + +E        L +         P ++    NL  S        EA     
Sbjct: 262 ANG----NQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFL 309

Query: 440 ICLDIMTKTVGPDDQSISFPMLH--------LGITLYHLNRDKEAEKLVLEALYIREIAF 491
             L++         +                L + L  L +           L      F
Sbjct: 310 EALNMQ-----RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 492 G 492
           G
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 34/231 (14%), Positives = 69/231 (29%), Gaps = 35/231 (15%)

Query: 264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE 323
               Y +     E N   +        F  G   ++EG   +A  +F   ++   K + E
Sbjct: 45  TSATYDKGYQFEEENPLRDHPQP----FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HME 99

Query: 324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL 383
                  A   L   +  N     A+   ++ L +    +      + +  + +      
Sbjct: 100 -------AWQYLGTTQAENEQELLAISALRRCLEL--KPDN----QTALMALAVSFTNE- 145

Query: 384 HIVGRGQEGRELLEECLLITEKYK-------GKEHPSFVTHLLNLAASYSRSKNFVEAER 436
                 ++  E+L + L  T  Y             + +     +  S      F+E + 
Sbjct: 146 ---SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKE 202

Query: 437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR 487
           L    + +   ++ PD Q        LG+         +A      AL +R
Sbjct: 203 LFLAAVRLDPTSIDPDVQCG------LGVLFNLSGEYDKAVDCFTAALSVR 247

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 33/232 (14%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
                   G    AV ++   +              +     LG+   +  + + A S  
Sbjct: 70  EGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L++              A+ +LA +        +A E+ +  LR    +    +  +
Sbjct: 122 RRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLR-YTPAYAHLVTPA 172

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLE--ECLLITEKYKGKEHPSFVTHLLNLAASYSRS 428
                   L     I+G        LE  E  L   +         V     L   ++ S
Sbjct: 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV--QCGLGVLFNLS 230

Query: 429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLH--LGITLYHLNRDKEAEK 478
             + +A       L +      P+D      +L   LG TL + N+ +EA  
Sbjct: 231 GEYDKAVDCFTAALSVR-----PND-----YLLWNKLGATLANGNQSEEAVA 272

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.3 bits (103), Expect = 9e-05
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G++Y   E Y+++  ++++ +                    +  VL  + + K A+   
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALR-AGMEN-------GDLFYMLGTVLVKLEQPKLALPYL 148

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +   ELN      +     F  G     EG   +A S F+ + +    +   +    
Sbjct: 149 QRAV---ELN-----ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF---- 196

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   +         N E+A+E+  KA+ +    ++
Sbjct: 197 -------YNAGVTYAYKENREKALEMLDKAIDI--QPDH 226

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 27/281 (9%), Positives = 68/281 (24%), Gaps = 54/281 (19%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
             G     LE  ++ + V  +    L  +        V ++   +    ++   ++ + +
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHG-LTPQQ-------VVAIASNSGGKQALETVQRLLPV 298

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
             +   +        +   V+ + S G              V  +   +  +        
Sbjct: 299 LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV------ 344

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
             +A+ S    K A    +  + +  +A   +     +++                  + 
Sbjct: 345 --VAIASHDGGKQALETVQRLLPVLCQAHG-LTPEQVVAI---------ASNGGGKQALE 392

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR--ICLDIM 445
             Q    +L +   +T        P  V  + +        +       +L     L   
Sbjct: 393 TVQRLLPVLCQAHGLT--------PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-- 442

Query: 446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
                P        +   G     L            AL  
Sbjct: 443 -----PQQVVA---IASNGGGRPALESIVAQLSRPDPALAA 475

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 23/160 (14%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-GSIGRAKKAVEI 267
              +Y  L+  +K+   +++ ++ ++    +               L G + R  +++  
Sbjct: 48  RAEIYQYLKVNDKAQESFRQALS-IKPDSAEI-------NNNYGWFLCGRLNRPAESMAY 99

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           + + +           A       + G    K+G+   AE+   R L            +
Sbjct: 100 FDKALADP-TYPTPYIA-----NLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQ 145

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL 367
              A   LA  K   G   +A   +KK    ++      L
Sbjct: 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 32/159 (20%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
           +G  Y      ++   + +R +              V     +      + +   AV + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLA-DAPDN-------VKVATVLGLTYVQVQKYDLAVPLL 99

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            +V           +       F LG      G+  +A   F   L +     KV+    
Sbjct: 100 IKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH---- 147

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY 364
                   ++A +    G  EEA+  +KKA  +  D   
Sbjct: 148 -------RAIAFSYEQMGRHEEALPHFKKANEL--DEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 30/152 (19%)

Query: 209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY 268
            G  ++    Y +++++ ++V +  ++         V   L +       G   +  E+ 
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYD-ADAFD-------VDVALHLGIAYVKTGAVDRGTELL 65

Query: 269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI---YTKVYGEND 325
            R +          + D V     LG  +++  K   A  +  ++ +       V     
Sbjct: 66  ERSLAD--------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR---- 113

Query: 326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALR 357
                    L  A    G  +EA++ +K AL 
Sbjct: 114 -------FRLGVALDNLGRFDEAIDSFKIALG 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 21/142 (14%)

Query: 341 ANGNAEEAVELYKKALRVIKDS----NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELL 396
            + N  E   +    +  I       +  ++ D +M+++    A   +  GR +E     
Sbjct: 1   GSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDI-YSYAYDFYNKGRIEEAEVFF 59

Query: 397 EECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI 456
               +             V +++ LAA Y   + F +A  L  +   +     G +D   
Sbjct: 60  RFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKND--- 103

Query: 457 SFPMLHLGITLYHLNRDKEAEK 478
             P+ H G     L    +A++
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKE 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.98
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.98
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.97
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.96
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.95
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.95
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.94
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.93
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.92
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.9
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.9
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.88
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.81
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.81
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.78
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.77
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.71
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.67
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.67
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.65
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.64
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.52
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.51
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.5
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.46
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.4
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.38
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.37
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.36
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.32
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.3
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.3
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.26
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.21
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.2
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.2
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.19
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.19
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.15
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.13
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.12
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.1
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.09
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.07
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.05
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.03
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.98
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.97
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.92
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.9
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.87
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.74
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.69
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.69
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.61
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.61
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.6
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.6
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.58
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.58
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.56
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.45
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.28
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.28
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	98.25
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.19
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.18
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.09
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.91
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.9
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.88
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.7
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	97.53
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.19
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.6
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.55
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.54
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.48
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.17
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.12
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.09
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.08
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.82
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.64
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	95.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.59
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.03
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.95
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.82
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.64
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.56
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.99
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.54
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.44
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.24
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.68
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.1
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.21
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	88.09
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.34
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	87.0
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	86.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.19
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	86.14
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	85.85
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	85.5
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.37
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.31
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	83.72
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.4
2npm_A	260	14-3-3 domain containing protein; cell regulator p	82.2
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	81.32
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	81.09
2o8p_A	227	14-3-3 domain containing protein; signaling protei	80.28

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-36  Score=294.42  Aligned_cols=371  Identities=16%  Similarity=0.188  Sum_probs=325.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH
Q 008016          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL  202 (581)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  202 (581)
                      ..+..+++.|++++|+..++++++.          .|....++..++.++...|++++|...++.++...       |..
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~   66 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQ----------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLL   66 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCc
Confidence            4678889999999999999999887          77778889999999999999999999999987753       555


Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      ..++..+|.++...|++++|+..|++++.+.        |....++..+|.++...|++++|+..++++++.        
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------  130 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--------  130 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            6789999999999999999999999999852        334678899999999999999999999999987        


Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      .|....++..+|.++...|++++|+..|+++++.        .|....++.++|.++...|++++|+..|+++++.    
T Consensus       131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----  198 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----  198 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence            5666788899999999999999999999999976        4566788999999999999999999999999986    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                         .|+.   ...+..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++
T Consensus       199 ---~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  264 (388)
T 1w3b_A          199 ---DPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             ---CTTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               2333   456789999999999999999999999886        24445688899999999999999999999999


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLEL  522 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~  522 (581)
                      ++        .|....++..+|.++...|++++|+..++++++..     |   ....++..++.++...|+++ +|+..
T Consensus       265 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~~~~~l~~~~~~~g~~~-~A~~~  327 (388)
T 1w3b_A          265 EL--------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-----P---THADSLNNLANIKREQGNIE-EAVRL  327 (388)
T ss_dssp             HT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHTTTCHH-HHHHH
T ss_pred             hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----c---ccHHHHHHHHHHHHHcCCHH-HHHHH
Confidence            84        46667789999999999999999999999998863     3   34477899999999999999 99999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          523 LKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       523 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      +++++++        .|+...++..+|.+|...|++++|+..|++++++.++...
T Consensus       328 ~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  374 (388)
T 1w3b_A          328 YRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             HHHHTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            9998863        3566778999999999999999999999999988765543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.9e-34  Score=274.53  Aligned_cols=354  Identities=16%  Similarity=0.133  Sum_probs=310.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .+...+..+...|++++|+..++++++.          .|..+.++..+|.++...|++++|+..+++++...       
T Consensus        35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------   97 (388)
T 1w3b_A           35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ----------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------   97 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------
Confidence            4667788889999999999999999887          78888999999999999999999999999988764       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      |....++..+|.++...|++++|+..|++++...        |....++..+|.++...|++++|+..|+++++.     
T Consensus        98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----  164 (388)
T 1w3b_A           98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----  164 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----
Confidence            4555678999999999999999999999998852        334667889999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                         .|....++..+|.++...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+++++.. 
T Consensus       165 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-  232 (388)
T 1w3b_A          165 ---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-  232 (388)
T ss_dssp             ---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence               5667889999999999999999999999999986        4556788999999999999999999999999987 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                            .|++   ..++.++|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..++
T Consensus       233 ------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  295 (388)
T 1w3b_A          233 ------SPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAYCNLANALKEKGSVAEAEDCYN  295 (388)
T ss_dssp             ------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             ------CcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                  3333   346689999999999999999999999875        23445678999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  519 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A  519 (581)
                      ++++.        .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|+++ +|
T Consensus       296 ~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~-~A  358 (388)
T 1w3b_A          296 TALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQ-EA  358 (388)
T ss_dssp             HHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------CTTCHHHHHHHHHHHHTTTCCH-HH
T ss_pred             HHHhh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHH-HH
Confidence            99985        4556678899999999999999999999999763        3555678999999999999999 99


Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          520 LELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       520 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      +..|++++++        .|+...++..+|.++...|+
T Consensus       359 ~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          359 LMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence            9999999873        45667889999999988774

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-32  Score=272.47  Aligned_cols=399  Identities=14%  Similarity=0.096  Sum_probs=326.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+...|..++..|++++|+..|+++++.          .| .+.++..+|.++...|++++|+..+++++...   
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   69 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALEL----------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK---   69 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence            34566899999999999999999999999987          44 37789999999999999999999999998764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-----------------------c---------------
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-----------------------Y---------------  237 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~---------------  237 (581)
                          |....++..+|.++...|++++|+..|++++......                       .               
T Consensus        70 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  145 (514)
T 2gw1_A           70 ----PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELST  145 (514)
T ss_dssp             ----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------
T ss_pred             ----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence                4455678999999999999999999999987642100                       0               


Q ss_pred             ---------CC------------------------CCHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhc--
Q 008016          238 ---------GK------------------------TSILLVTSLLGMAKVLGS---IGRAKKAVEIYHRVITILELNR--  279 (581)
Q Consensus       238 ---------~~------------------------~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~--  279 (581)
                               .+                        ..+.....+..+|.++..   .|++++|+..++++++..+...  
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  225 (514)
T 2gw1_A          146 QPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK  225 (514)
T ss_dssp             -----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhcc
Confidence                     00                        001125667778887776   8999999999999999654333  


Q ss_pred             CCCC----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          280 GTES----ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       280 ~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      .+++    |....++..+|.++...|++++|...++++++.        .|. ..++..+|.++...|++++|+..++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             CccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            2222    677889999999999999999999999999986        234 788999999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAE  435 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  435 (581)
                      +..       .++.   ..++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+
T Consensus       297 ~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~  358 (514)
T 2gw1_A          297 LKL-------DSNN---SSVYYHRGQMNFILQNYDQAGKDFDKAKELD--------PENIFPYIQLACLAYRENKFDDCE  358 (514)
T ss_dssp             HTT-------CTTC---THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--------SSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred             hhc-------CcCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------hhhHHHHHHHHHHHHHcCCHHHHH
Confidence            875       2333   3456889999999999999999999998752        223457889999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH---c
Q 008016          436 RLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR---L  512 (581)
Q Consensus       436 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~---~  512 (581)
                      ..+++++..        .|....++..+|.++...|++++|+..++++++.....  +.......++..+|.++..   .
T Consensus       359 ~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          359 TLFSEAKRK--------FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             HHHHHHHHH--------STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCT
T ss_pred             HHHHHHHHH--------cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhc
Confidence            999999885        34445688999999999999999999999999876321  1111113478999999999   9


Q ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          513 GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       513 g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      |+++ +|+..++++++..        |+...++..+|.+|...|++++|...|++++.+.++..+.
T Consensus       429 ~~~~-~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          429 ENFI-EATNLLEKASKLD--------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             THHH-HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             CCHH-HHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence            9999 9999999999852        4445778999999999999999999999999988765543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-31  Score=272.07  Aligned_cols=395  Identities=13%  Similarity=0.028  Sum_probs=309.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIV------  192 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------  192 (581)
                      ..+...+..+...|++++|+..|++++.           .+....++..++.+|...|++++|+..|++.....      
T Consensus       118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  186 (597)
T 2xpi_A          118 NDAFWLAQVYCCTGDYARAKCLLTKEDL-----------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA  186 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCG-----------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred             hHHHHHHHHHHHcCcHHHHHHHHHHHhc-----------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence            3466788889999999999999888753           24456788999999999999999999988421100      


Q ss_pred             ---hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--------------------------------
Q 008016          193 ---DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------------------------------  237 (581)
Q Consensus       193 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------  237 (581)
                         .......+....+++.+|.+|...|++++|+..|++++.......                                
T Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~  266 (597)
T 2xpi_A          187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE  266 (597)
T ss_dssp             ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred             ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence               000011244577899999999999999999999999986521000                                


Q ss_pred             ------------C-------------------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          238 ------------G-------------------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       238 ------------~-------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                                  .                   ...+....++..++.+|...|++++|+.+|+++++.        .|..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~  338 (597)
T 2xpi_A          267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYN  338 (597)
T ss_dssp             GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTC
T ss_pred             hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------Cccc
Confidence                        0                   000123456677788888888888888888887765        2333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (581)
                      ..++..++.++...|++++|...+++++..        .|....++..+|.+|...|++++|..+|+++++.       .
T Consensus       339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~  403 (597)
T 2xpi_A          339 LDVYPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-------D  403 (597)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------C
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------C
Confidence            455677788888888888888888887754        3445678889999999999999999999999886       2


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 008016          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (581)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (581)
                      +..   ..++..++.+|...|++++|+++|++++...        |....++..+|.+|...|++++|+++|+++++.  
T Consensus       404 ~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  470 (597)
T 2xpi_A          404 PQF---GPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--  470 (597)
T ss_dssp             TTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            222   3467889999999999999999999988652        333467888999999999999999999999875  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh-HHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP-VGEALDCLVSIQTRLGEDDTKLLELLKR  525 (581)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~~A~~~~~~  525 (581)
                            .|....++..+|.++...|++++|+++|+++++.....  +..|. ...++..++.++...|+++ +|+..+++
T Consensus       471 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~  541 (597)
T 2xpi_A          471 ------FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYD-AAIDALNQ  541 (597)
T ss_dssp             ------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred             ------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHH-HHHHHHHH
Confidence                  34455788999999999999999999999999876543  23444 3788999999999999999 99999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          526 VLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       526 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      +++..        |+...++..++.+|...|++++|.+.|++++++.++...
T Consensus       542 ~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          542 GLLLS--------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             HHHHS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence            98852        334578899999999999999999999999999876543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=9.5e-31  Score=264.79  Aligned_cols=394  Identities=16%  Similarity=0.148  Sum_probs=307.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+...|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...   
T Consensus        23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---   89 (537)
T 3fp2_A           23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---   89 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence            45567999999999999999999999999987          77788999999999999999999999999998764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH------------------------HHcCC---------CCH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE------------------------SRYGK---------TSI  242 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------------------------~~~~~---------~~~  242 (581)
                          |....++..+|.++...|++++|+..|+ ++....                        .....         ...
T Consensus        90 ----p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~  164 (537)
T 3fp2_A           90 ----PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN  164 (537)
T ss_dssp             ----TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred             ----CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence                4455678999999999999999999995 443211                        11000         000


Q ss_pred             ---------------------------HHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHHHHHHhcCCCChh--
Q 008016          243 ---------------------------LLVTSLLGMAKVLG--------SIGRAKKAVEIYHRVITILELNRGTESAD--  285 (581)
Q Consensus       243 ---------------------------~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~~~~~~--  285 (581)
                                                 ........++..+.        ..|++++|+..++++++.     .++++.  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~-----~p~~~~~~  239 (537)
T 3fp2_A          165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA-----NTVDDPLR  239 (537)
T ss_dssp             HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred             hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----CCCcchhh
Confidence                                       00002222222222        234566666666666654     223332  


Q ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          286 --LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       286 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                        .+.++..+|.++...|++++|+..++++++.        .|. ..++..+|.++...|++++|+.+++++++.     
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----  305 (537)
T 3fp2_A          240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL-----  305 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----
Confidence              3567889999999999999999999999986        344 678899999999999999999999999987     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        .|+.   ..++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|+..++++++
T Consensus       306 --~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          306 --NPEY---PPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--------PENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             --CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              2333   4467899999999999999999999999862        23346788999999999999999999999998


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc----------C
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------G  513 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g  513 (581)
                      .        .|....++..+|.++...|++++|+..++++++.....  +........+..++.++...          |
T Consensus       373 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  442 (537)
T 3fp2_A          373 K--------FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEE  442 (537)
T ss_dssp             H--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred             h--------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence            5        35556688999999999999999999999999987443  12222234467788899988          9


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          514 EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       514 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      +++ +|+..++++++.        .|+...++..+|.+|...|++++|+..|++++++.+...+.
T Consensus       443 ~~~-~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  498 (537)
T 3fp2_A          443 KFN-AAIKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK  498 (537)
T ss_dssp             HHH-HHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred             HHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            999 999999999985        24445788999999999999999999999999998765543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.8e-29  Score=249.30  Aligned_cols=381  Identities=14%  Similarity=0.103  Sum_probs=301.4

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+...|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...   
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---   90 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---   90 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            44566889999999999999999999999986          67778899999999999999999999999988764   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH------------HHHHHHHHHhcCCHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTS------------LLGMAKVLGSIGRAKK  263 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~  263 (581)
                          |....++..+|.+|...|++++|+..|++++..     .++.+....+            +..+|.++...|++++
T Consensus        91 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  161 (450)
T 2y4t_A           91 ----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA  161 (450)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                344567899999999999999999999999874     2222211122            4455888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC
Q 008016          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG  343 (581)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  343 (581)
                      |+..++++++.        .|....++..+|.+|...|++++|+..|+++++..        |....++..+|.+|...|
T Consensus       162 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g  225 (450)
T 2y4t_A          162 AIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------NDNTEAFYKISTLYYQLG  225 (450)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------CSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC
Confidence            99999999987        45567889999999999999999999999999862        344678999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH---------HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-
Q 008016          344 NAEEAVELYKKALRVIKDSNYMSLDDSIMENMR---------IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-  413 (581)
Q Consensus       344 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  413 (581)
                      ++++|+..+++++..       .|+.......+         ..+|.++...|++++|+.+|++++...     +.++. 
T Consensus       226 ~~~~A~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~  293 (450)
T 2y4t_A          226 DHELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSIAEY  293 (450)
T ss_dssp             CHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHH
T ss_pred             CHHHHHHHHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CcchHH
Confidence            999999999999976       34444433222         344999999999999999999998862     33333 


Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          414 FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      ....+..+|.++...|++++|+..+++++++        .|....++..+|.++...|++++|+..+++++++.     |
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p  360 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-----E  360 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----S
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----c
Confidence            3568899999999999999999999999985        45666789999999999999999999999998743     4


Q ss_pred             CChhHHHHHHHHHHH------------HHHcC-----CChHHHHHHHHH-HHHHHHHhcCCCC--HHHHHHHHHHHHHHH
Q 008016          494 DSLPVGEALDCLVSI------------QTRLG-----EDDTKLLELLKR-VLRIQEREFGSES--EEVMLTLKKVVSYLD  553 (581)
Q Consensus       494 ~~~~~~~~~~~la~~------------~~~~g-----~~~~~A~~~~~~-a~~~~~~~~~~~~--~~~~~~~~~la~~~~  553 (581)
                      +++   .++..++.+            |...|     +.+ ++...|++ +++..........  ......+..++.+|.
T Consensus       361 ~~~---~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~-~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~  436 (450)
T 2y4t_A          361 NDQ---QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ-EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE  436 (450)
T ss_dssp             SCH---HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT-HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             chH---HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH-HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            444   556666633            44445     344 67777776 5543322211111  224557788999999


Q ss_pred             HcCChhhhHH
Q 008016          554 KLGRKEEKFP  563 (581)
Q Consensus       554 ~~g~~~~A~~  563 (581)
                      ..|+.+++..
T Consensus       437 ~L~d~~~r~~  446 (450)
T 2y4t_A          437 VLSDPEMRKK  446 (450)
T ss_dssp             HSSGGGGC--
T ss_pred             HhCCHHHHHh
Confidence            9999887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=263.88  Aligned_cols=396  Identities=10%  Similarity=-0.018  Sum_probs=274.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--CcchHHHHHHHH
Q 008016          132 GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--DEPLLDAILLHM  209 (581)
Q Consensus       132 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~l  209 (581)
                      ++.+.++..+++.+.....    ..+.+..+..++.+|.++...|++++|++.+++++++......  .++....++.++
T Consensus        25 ~~~~~~l~~~e~~~~~~~~----~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nl  100 (472)
T 4g1t_A           25 MEGENSLDDFEDKVFYRTE----FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY  100 (472)
T ss_dssp             TTTCCCHHHHHHHHHHHTT----SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            4455555555554432211    2234445678899999999999999999999999988755432  356677789999


Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI--GRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      |.+|..+|++++|+.++++++.+.+...++.++..+.++..+|.++...  +++++|+.+|++++++        .|...
T Consensus       101 a~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~  172 (472)
T 4g1t_A          101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNP  172 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCH
Confidence            9999999999999999999999988876655555667788888777654  5799999999999998        44455


Q ss_pred             HHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHH
Q 008016          288 LPLFSLGSLF---IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC----ANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       288 ~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~  360 (581)
                      .++..++.++   ...++.++|++.+++++++        +|....++..+|..+.    ..|++++|..++++++..  
T Consensus       173 ~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--  242 (472)
T 4g1t_A          173 EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--  242 (472)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--
Confidence            6666666664   4568889999999999986        3444555666666554    456788999999999886  


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------------
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS------------  428 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------------  428 (581)
                           .|+.   ..++.++|.+|...|++++|+..++++++.        +|....++..+|.+|...            
T Consensus       243 -----~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~  306 (472)
T 4g1t_A          243 -----APGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGM  306 (472)
T ss_dssp             -----CSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             -----CccH---HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence                 2333   345689999999999999999999999986        355567788888887653            


Q ss_pred             -------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 008016          429 -------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  501 (581)
Q Consensus       429 -------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  501 (581)
                             +.+++|+..+++++++        +|....++..+|.++...|++++|+.+|++++++.     +++......
T Consensus       307 ~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-----~~~~~~~~~  373 (472)
T 4g1t_A          307 YGKRKLLELIGHAVAHLKKADEA--------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE-----LTPVAKQLL  373 (472)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHH--------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----CCHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhc--------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-----CCChHHHHH
Confidence                   2355666666666653        34555677899999999999999999999998742     333333345


Q ss_pred             HHHHHHHH-HHcCCChHHHHHHHHHHHHHH-----------------HHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016          502 LDCLVSIQ-TRLGEDDTKLLELLKRVLRIQ-----------------EREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  563 (581)
Q Consensus       502 ~~~la~~~-~~~g~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  563 (581)
                      +..++.+. ...|+++ +|+..|++++++.                 ++.+ ..+|..+.++..||.+|...|++++|++
T Consensus       374 ~~~~~~~~~~~~~~~~-~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          374 HLRYGNFQLYQMKCED-KAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HHHHHHHHHHTSSCHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHCCCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            56666654 4678888 9999999998642                 1111 1235556789999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 008016          564 LKKRLSNLRMKYKQKVQ  580 (581)
Q Consensus       564 ~~~~a~~l~~~~~~~~~  580 (581)
                      +|++++++.+....+..
T Consensus       452 ~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          452 DSERGLESGSLIPSASS  468 (472)
T ss_dssp             -----------------
T ss_pred             HHHHHHhcCCCCCcHhh
Confidence            99999999988776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-29  Score=258.81  Aligned_cols=394  Identities=12%  Similarity=0.031  Sum_probs=306.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ....+...+..+.+.|++++|+.+|++++..          .|+. ..+..++.++...|++++|+..++++...     
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  146 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI----------TGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-----  146 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhh----------CCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----
Confidence            3455788889999999999999999999864          2322 56788999999999999999999986432     


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE--------SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                         +....+++.++.+|...|++++|+..|++......        .......+....++..+|.+|...|++++|+..|
T Consensus       147 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  223 (597)
T 2xpi_A          147 ---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY  223 (597)
T ss_dssp             ---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence               22345788999999999999999999985321100        0000011345788999999999999999999999


Q ss_pred             HHHHHHHHHhc--------------------------------------------C-------------------CCChh
Q 008016          269 HRVITILELNR--------------------------------------------G-------------------TESAD  285 (581)
Q Consensus       269 ~~al~~~~~~~--------------------------------------------~-------------------~~~~~  285 (581)
                      +++++......                                            .                   ...+.
T Consensus       224 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~  303 (597)
T 2xpi_A          224 KEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK  303 (597)
T ss_dssp             HHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred             HHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence            99876521100                                            0                   01124


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      ...++..++.+|...|++++|+..|+++++.        .|....++..++.++...|++++|...+++++..       
T Consensus       304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  368 (597)
T 2xpi_A          304 SSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-------  368 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------
Confidence            4566777888888888888888888887764        1223345667788888888888888888887754       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      .++.   ..++..+|.+|...|++++|+.+|++++..        .|....++..++.+|...|++++|++.|+++++. 
T Consensus       369 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  436 (597)
T 2xpi_A          369 HPEK---AVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-  436 (597)
T ss_dssp             CTTS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-
T ss_pred             Cccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            2222   345678999999999999999999999875        2344568889999999999999999999999873 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKR  525 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~  525 (581)
                             .|....++..++.+|...|++++|+++|+++++..     +++   ..++..++.++...|+++ +|+.+|++
T Consensus       437 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~-~A~~~~~~  500 (597)
T 2xpi_A          437 -------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QYD---PLLLNELGVVAFNKSDMQ-TAINHFQN  500 (597)
T ss_dssp             -------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCC---HHHHHHHHHHHHHTTCHH-HHHHHHHH
T ss_pred             -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhCCHH-HHHHHHHH
Confidence                   34455688899999999999999999999998753     343   367899999999999999 99999999


Q ss_pred             HHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          526 VLRIQEREFGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       526 a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      ++++....  +..|+ ...++..+|.+|.+.|++++|+..|++++++.++
T Consensus       501 ~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  548 (597)
T 2xpi_A          501 ALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN  548 (597)
T ss_dssp             HHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            99876542  22344 3688999999999999999999999999987653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.98  E-value=3.5e-29  Score=243.77  Aligned_cols=339  Identities=18%  Similarity=0.185  Sum_probs=295.3

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (581)
                      ......+..+|.++...|++++|+..+++++...   +.+......++..+|.++...|++++|+.++++++.+....  
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   80 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--   80 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--
Confidence            3445678899999999999999999999998873   33444456789999999999999999999999999988765  


Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------------
Q 008016          239 KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------------  302 (581)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  302 (581)
                      .+.+....++..+|.++...|++++|+.++++++++....  .+.+....++..+|.+|...|+                
T Consensus        81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~  158 (406)
T 3sf4_A           81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE  158 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence            4567788999999999999999999999999999998765  3445667899999999999999                


Q ss_pred             ----HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHH
Q 008016          303 ----AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRID  378 (581)
Q Consensus       303 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  378 (581)
                          +++|+.++.+++.+....  ++.+....++.++|.++...|++++|+.++++++++....    +++.....++.+
T Consensus       159 a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~  232 (406)
T 3sf4_A          159 VRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSN  232 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc----CCcHHHHHHHHH
Confidence                999999999999988775  4566788899999999999999999999999999998763    455666778899


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHH
Q 008016          379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISF  458 (581)
Q Consensus       379 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  458 (581)
                      +|.++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++++....  ++.+....
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~  308 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGR  308 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHH
Confidence            9999999999999999999999998765  4455667899999999999999999999999999987765  33456677


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          459 PMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       459 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      ++..+|.++...|++++|..++++++++....  .+.+....++..++.++...|+..
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhH
Confidence            88999999999999999999999999998765  455677888999999999999876

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.98  E-value=7e-29  Score=241.62  Aligned_cols=341  Identities=17%  Similarity=0.140  Sum_probs=294.5

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      ....+...|..+...|++++|+.+|++++...    ..+......++..+|.++...|++++|+.++++++.+....  .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~   81 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G   81 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence            34567889999999999999999999999862    22333457889999999999999999999999999998764  4


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC-----------------
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-----------------  344 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------  344 (581)
                      +.+....++..+|.++...|++++|+.++++++++....  .+.+....++..+|.+|...|+                 
T Consensus        82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            567788899999999999999999999999999998876  3445678899999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 008016          345 ---AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNL  421 (581)
Q Consensus       345 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  421 (581)
                         +++|+.++++++.+....    ++.+....++.++|.++...|++++|+.++++++.+....  .+.+....++..+
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l  233 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTAL----GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence               999999999999998763    4567777889999999999999999999999999998775  4456677799999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHH
Q 008016          422 AASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEA  501 (581)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  501 (581)
                      |.++...|++++|+.++++++.+....  ++.+....++..+|.++...|++++|..++++++++....  .+.+....+
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~  309 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--NDRIGEGRA  309 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc--CCcHHHHHH
Confidence            999999999999999999999987664  3345557788999999999999999999999999988765  345666788


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHH
Q 008016          502 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFP  563 (581)
Q Consensus       502 ~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  563 (581)
                      +..+|.++...|+++ +|+.++++++++....  ...+....++..++.++...|+...+..
T Consensus       310 ~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~  368 (406)
T 3sf4_A          310 CWSLGNAYTALGNHD-QAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYSTNN  368 (406)
T ss_dssp             HHHHHHHHHHHTCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred             HHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence            999999999999999 9999999999998775  3457778899999999999998855443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=8.1e-28  Score=229.88  Aligned_cols=329  Identities=15%  Similarity=0.071  Sum_probs=270.5

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      +..++..|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...     
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-----   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence            456889999999999999999999999987          67778899999999999999999999999988764     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------HHHHHhcCCHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM------------AKVLGSIGRAKKAV  265 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~  265 (581)
                        |....++..+|.++...|++++|+..+++++...     +.......++..+            |.++...|++++|+
T Consensus        68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              3344678999999999999999999999998742     1000333444444            89999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                      ..++++++.        .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++
T Consensus       141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCH
Confidence            999999987        4555788999999999999999999999999864        455567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENM---------RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FV  415 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~  415 (581)
                      ++|+..++++++.       .|+.......         ...+|.++...|++++|+..+++++...     ++.+. ..
T Consensus       205 ~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~  272 (359)
T 3ieg_A          205 ELSLSEVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTV  272 (359)
T ss_dssp             HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHH
T ss_pred             HHHHHHHHHHHhh-------CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHH
Confidence            9999999999986       3444433222         2355889999999999999999998863     33332 34


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                      ..+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|...|++++++.     |++
T Consensus       273 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-----p~~  339 (359)
T 3ieg_A          273 RSKERICHCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-----END  339 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC
Confidence            56788999999999999999999999985        45567789999999999999999999999998753     444


Q ss_pred             hhHHHHHHHHHHHHHHc
Q 008016          496 LPVGEALDCLVSIQTRL  512 (581)
Q Consensus       496 ~~~~~~~~~la~~~~~~  512 (581)
                      +   .+...++.++...
T Consensus       340 ~---~~~~~l~~~~~~~  353 (359)
T 3ieg_A          340 Q---QIREGLEKAQRLL  353 (359)
T ss_dssp             H---HHHHHHHHHHHHH
T ss_pred             h---HHHHHHHHHHHHH
Confidence            4   4555666655443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.97  E-value=2.4e-28  Score=241.28  Aligned_cols=349  Identities=13%  Similarity=0.104  Sum_probs=277.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +|..+..+..+|..+...|++++|+..|++++...       |....++..+|.++...|++++|+..++++++..    
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----   90 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----   90 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence            78899999999999999999999999999988763       3446678999999999999999999999999862    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH------------HHHHHHHHHHcCCHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP------------LFSLGSLFIKEGKAVD  305 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------~~~la~~~~~~g~~~~  305 (581)
                          |....++..+|.+|...|++++|+..|+++++.     .++.+....+            +..+|.++...|++++
T Consensus        91 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  161 (450)
T 2y4t_A           91 ----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA  161 (450)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence                223678999999999999999999999999875     2222211133            3445778999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016          306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (581)
Q Consensus       306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (581)
                      |+..|+++++.        .|....++..+|.+|...|++++|+..++++++..       ++.   ..++..+|.++..
T Consensus       162 A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---~~~~~~l~~~~~~  223 (450)
T 2y4t_A          162 AIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-------NDN---TEAFYKISTLYYQ  223 (450)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-------CSC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHH
Confidence            99999999876        34556788999999999999999999999999873       222   4567899999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHH---------HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 008016          386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHL---------LNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-  455 (581)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  455 (581)
                      .|++++|+..+++++...     ++++.....+         ..+|.++...|++++|+.+|++++.+     .++++. 
T Consensus       224 ~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~  293 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEY  293 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchHH
Confidence            999999999999998762     3444333222         34499999999999999999999985     233332 


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      ....+..+|.++...|++++|+..+++++++.        |....++..+|.++...|+++ +|+..+++++++     .
T Consensus       294 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~-----~  359 (450)
T 2y4t_A          294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------PDNVNALKDRAEAYLIEEMYD-EAIQDYETAQEH-----N  359 (450)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT-----S
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHh-----C
Confidence            24578899999999999999999999998753        444578999999999999999 999999999874     2


Q ss_pred             CCCHHHHHHHHHHH------------HHHHHcC-----ChhhhHHHHHH-HHHH
Q 008016          536 SESEEVMLTLKKVV------------SYLDKLG-----RKEEKFPLKKR-LSNL  571 (581)
Q Consensus       536 ~~~~~~~~~~~~la------------~~~~~~g-----~~~~A~~~~~~-a~~l  571 (581)
                      ++   ...++..++            ..|...|     +.+++.+.|++ ++..
T Consensus       360 p~---~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~  410 (450)
T 2y4t_A          360 EN---DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW  410 (450)
T ss_dssp             SS---CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS
T ss_pred             cc---hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh
Confidence            33   345566666            3344555     45566777776 4443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=2.3e-27  Score=231.18  Aligned_cols=315  Identities=18%  Similarity=0.200  Sum_probs=275.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .+.....+..+|..+...|++++|+..+++++...   +.+......++..+|.++...|++++|+.++++++.+.+.. 
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-  119 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-  119 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-
Confidence            35667788899999999999999999999998873   33334456788999999999999999999999999988765 


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------------
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------------  302 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------  302 (581)
                       .+.+....++..+|.+|...|++++|+.++++++++....  .+.+....++..+|.+|...|+               
T Consensus       120 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~  196 (411)
T 4a1s_A          120 -NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK  196 (411)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred             -cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence             4567788999999999999999999999999999998775  3567788899999999999999               


Q ss_pred             --HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016          303 --AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (581)
Q Consensus       303 --~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (581)
                        +++|+.++++++++....  .+.+....++.++|.++...|++++|+.++++++++....    .+......++.++|
T Consensus       197 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~la  270 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF----GDRAAERRANSNLG  270 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHH
Confidence              999999999999988776  4556778899999999999999999999999999998763    44556667889999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (581)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (581)
                      .++...|++++|+.++++++.+....  .+......++..+|.++...|++++|+.++++++.+....  .+.+....++
T Consensus       271 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~  346 (411)
T 4a1s_A          271 NSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL--GDRIGEARAC  346 (411)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChHHHHHHH
Confidence            99999999999999999999998765  4455667889999999999999999999999999988776  3345667789


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALYIREI  489 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~  489 (581)
                      ..+|.++...|++++|..++++++++.+.
T Consensus       347 ~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          347 WSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999997643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-28  Score=244.58  Aligned_cols=356  Identities=15%  Similarity=0.072  Sum_probs=294.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-  196 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-  196 (581)
                      ...+...+..+...|++++|+..++++++.          .|....++..+|.++...|++++|+..++++........ 
T Consensus        39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           39 PVFYSNLSACYVSVGDLKKVVEMSTKALEL----------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            345888999999999999999999999987          777889999999999999999999999998766431000 


Q ss_pred             -----------------------------------------------------------------------CCcchHHHH
Q 008016          197 -----------------------------------------------------------------------DDEPLLDAI  205 (581)
Q Consensus       197 -----------------------------------------------------------------------~~~~~~~~~  205 (581)
                                                                                             -..|.....
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (514)
T 2gw1_A          109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK  188 (514)
T ss_dssp             GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence                                                                                   000223556


Q ss_pred             HHHHHHHHHh---ccCHHHHHHHHHHHHHHHHHHc--CCCC----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          206 LLHMGSMYST---LENYEKSMLVYQRVINVLESRY--GKTS----ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       206 ~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      +..+|..+..   .|++++|+..+++++...+...  .+++    +....++..+|.++...|++++|+..++++++.  
T Consensus       189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--  266 (514)
T 2gw1_A          189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--  266 (514)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence            6778887776   8999999999999998654433  2232    667889999999999999999999999999987  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                            .|. ..++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++++
T Consensus       267 ------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          267 ------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             ------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             ------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  344 788999999999999999999999999864        34445678999999999999999999999998


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                      ..       .+..   ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.
T Consensus       332 ~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~  393 (514)
T 2gw1_A          332 EL-------DPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKF--------PEAPEVPNFFAEILTDKNDFDKALK  393 (514)
T ss_dssp             HT-------CSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             Hh-------Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--------ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            85       2333   3366889999999999999999999998762        2334578899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYH---LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  513 (581)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  513 (581)
                      ++++++......  +.......++..+|.++..   .|++++|+..++++++..        |....++..+|.++...|
T Consensus       394 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g  463 (514)
T 2gw1_A          394 QYDLAIELENKL--DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--------PRSEQAKIGLAQMKLQQE  463 (514)
T ss_dssp             HHHHHHHHHHTS--SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhcc--chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhc
Confidence            999999864322  1111224478999999999   999999999999998853        334477899999999999


Q ss_pred             CChHHHHHHHHHHHHH
Q 008016          514 EDDTKLLELLKRVLRI  529 (581)
Q Consensus       514 ~~~~~A~~~~~~a~~~  529 (581)
                      +++ +|+..+++++++
T Consensus       464 ~~~-~A~~~~~~a~~~  478 (514)
T 2gw1_A          464 DID-EAITLFEESADL  478 (514)
T ss_dssp             CHH-HHHHHHHHHHHH
T ss_pred             CHH-HHHHHHHHHHHh
Confidence            999 999999999985

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.97  E-value=3.8e-27  Score=229.65  Aligned_cols=316  Identities=16%  Similarity=0.104  Sum_probs=275.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES-ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      +.....+..+|..+...|++++|+.+++++++.     .+++ .....++..+|.+|...|++++|+.++++++++.+..
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            456777889999999999999999999999997     2333 3345789999999999999999999999999998775


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC------------
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR------------  388 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------  388 (581)
                        .+++....++..+|.+|...|++++|+.++++++.+....    .+.+....++.++|.+|...|+            
T Consensus       120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  193 (411)
T 4a1s_A          120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD  193 (411)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred             --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence              4567788999999999999999999999999999998764    4566778889999999999999            


Q ss_pred             -----hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 008016          389 -----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHL  463 (581)
Q Consensus       389 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  463 (581)
                           +++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++++....  .+......++..+
T Consensus       194 ~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l  269 (411)
T 4a1s_A          194 DVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNL  269 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHH
Confidence                 999999999999988776  4557778899999999999999999999999999988764  2344556688999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 008016          464 GITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVML  543 (581)
Q Consensus       464 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  543 (581)
                      |.++...|++++|+.++++++.+....  .+......++..+|.++...|+++ +|+.++++++++....  ...+....
T Consensus       270 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~--~~~~~~~~  344 (411)
T 4a1s_A          270 GNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEFN-TAIEYHNRHLAIAQEL--GDRIGEAR  344 (411)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHC--CChHHHHH
Confidence            999999999999999999999988754  344556788999999999999999 9999999999988775  23567778


Q ss_pred             HHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhh
Q 008016          544 TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       544 ~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      ++..+|.+|...|++++|..+|++++.+.++.+.
T Consensus       345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  378 (411)
T 4a1s_A          345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX  378 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999876554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.97  E-value=5.5e-27  Score=224.06  Aligned_cols=328  Identities=13%  Similarity=0.081  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      .+..+..+|..+...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++...     ++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~   69 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-----MD   69 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC
Confidence            35678899999999999999999999988764       3445678999999999999999999999999862     22


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHH------------HHHHHHcCCHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA---DLVLPLFSL------------GSLFIKEGKAVD  305 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~  305 (581)
                         ...++..+|.++...|++++|+..++++++.        .|   ....++..+            |.++...|++++
T Consensus        70 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  138 (359)
T 3ieg_A           70 ---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTA  138 (359)
T ss_dssp             ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ---cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence               3578899999999999999999999999876        33   444455444            799999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016          306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (581)
Q Consensus       306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (581)
                      |+..++++++.        .|....++..+|.++...|++++|+..+++++..       .|+.   ..++..+|.++..
T Consensus       139 A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~  200 (359)
T 3ieg_A          139 AITFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------KSDN---TEAFYKISTLYYQ  200 (359)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CSCC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHH
Confidence            99999999986        3445678899999999999999999999999875       3333   3467899999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChHHHHH---------HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-
Q 008016          386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTH---------LLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-  455 (581)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  455 (581)
                      .|++++|+..+++++...     ++++.....         ...+|.++...|++++|+..+++++..     .++++. 
T Consensus       201 ~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~  270 (359)
T 3ieg_A          201 LGDHELSLSEVRECLKLD-----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSVAEY  270 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred             cCCHHHHHHHHHHHHhhC-----ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHH
Confidence            999999999999998763     344443222         235588999999999999999999885     233322 


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      ....+..+|.++...|++++|+..++++++..        |....++..+|.++...|+++ +|+..|++++++      
T Consensus       271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~------  335 (359)
T 3ieg_A          271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAYLIEEMYD-EAIQDYEAAQEH------  335 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHTT------
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhc------
Confidence            22457789999999999999999999998852        344578999999999999999 999999999874      


Q ss_pred             CCCHHHHHHHHHHHHHHHHcC
Q 008016          536 SESEEVMLTLKKVVSYLDKLG  556 (581)
Q Consensus       536 ~~~~~~~~~~~~la~~~~~~g  556 (581)
                        .|+...+...++.++...+
T Consensus       336 --~p~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          336 --NENDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             --CTTCHHHHHHHHHHHHHHH
T ss_pred             --CCCChHHHHHHHHHHHHHH
Confidence              2444456666676666544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=1.4e-26  Score=219.15  Aligned_cols=310  Identities=17%  Similarity=0.209  Sum_probs=268.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      ...+...|..+...|++++|+..+++++...   +.+......++..+|.++...|++++|+.++++++.+....  .+.
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~   79 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ   79 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence            4567788999999999999999999998873   33444456788999999999999999999999999988775  455


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-------------------
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-------------------  302 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------  302 (581)
                      +....++..+|.++...|++++|+.++++++++....  ++.+....++..+|.++...|+                   
T Consensus        80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~  157 (338)
T 3ro2_A           80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN  157 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence            6778899999999999999999999999999998764  3455667799999999999999                   


Q ss_pred             -HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHH
Q 008016          303 -AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE  381 (581)
Q Consensus       303 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~  381 (581)
                       +++|..++++++.+.+..  ++.+....++..+|.++...|++++|+.++++++++....    +++.....++..+|.
T Consensus       158 ~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~  231 (338)
T 3ro2_A          158 ALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF----GDKAAERRAYSNLGN  231 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----CChHHHHHHHHHHHH
Confidence             999999999999988776  4556678899999999999999999999999999998763    455666778899999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q 008016          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPML  461 (581)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  461 (581)
                      ++...|++++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++.+....  .+.+....++.
T Consensus       232 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~  307 (338)
T 3ro2_A          232 AYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACW  307 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHH
Confidence            9999999999999999999988765  4456667889999999999999999999999999987765  23455667889


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          462 HLGITLYHLNRDKEAEKLVLEALYIRE  488 (581)
Q Consensus       462 ~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (581)
                      .+|.++...|++++|..++++++++..
T Consensus       308 ~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          308 SLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            999999999999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.97  E-value=1.4e-26  Score=219.16  Aligned_cols=313  Identities=15%  Similarity=0.108  Sum_probs=267.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ...+...|..+...|++++|+.+++++++..    ..+......++..+|.++...|++++|+.+++++++..+..  ++
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   78 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD   78 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cc
Confidence            4457778999999999999999999999972    12233346789999999999999999999999999998776  45


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC----------------
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR----------------  388 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------------  388 (581)
                      .+....++..+|.++...|++++|+.++++++++..+.    ++......++..+|.++...|+                
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED  154 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence            66778899999999999999999999999999998763    4556667788999999999999                


Q ss_pred             ----hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          389 ----GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       389 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                          +++|+.++++++.+....  .+.+....++..+|.++...|++++|+.++++++++....  ++.+....++..+|
T Consensus       155 a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          155 VRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLG  230 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence                999999999999987766  4557778899999999999999999999999999987765  33455667899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 008016          465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  544 (581)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  544 (581)
                      .++...|++++|..++++++++....  .+.+....++..+|.++...|+++ +|+.++++++++.....  ..+....+
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~~~~~~~  305 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQDYE-KAIDYHLKHLAIAQELK--DRIGEGRA  305 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHhcC--CcHHHHHH
Confidence            99999999999999999999988654  345566788999999999999999 99999999999887652  34666788


Q ss_pred             HHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          545 LKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       545 ~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      +..+|.+|...|++++|..++++++.+.++.+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  337 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISREVG  337 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999987764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=236.43  Aligned_cols=361  Identities=15%  Similarity=0.110  Sum_probs=258.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC-CC
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK-DD  198 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~  198 (581)
                      .+..+|..+...|++++|++.|++++++.+.... ....+....++.++|.+|..+|++++|+.++++++.+..... ..
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            4667889999999999999999999998776531 223566788899999999999999999999999998876643 23


Q ss_pred             cchHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTL--ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV---LGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~al~  273 (581)
                      ++..+.++..+|.++...  +++++|+.+|++++.+     .++++   .++..++.+   +...++.++|+..++++++
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~---~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNP---EFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            455667788888776654  5799999999999986     34444   444555555   4566888999999999998


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (581)
                      +        +|....++..+|..+..    .|++++|..++++++..        +|....++.++|.+|...|++++|+
T Consensus       204 l--------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~  267 (472)
T 4g1t_A          204 L--------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--------APGVTDVLRSAAKFYRRKDEPDKAI  267 (472)
T ss_dssp             H--------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             c--------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHcCchHHHH
Confidence            8        45556667677766554    56788999999999876        4566678899999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-------------------ChHHHHHHHHHHHHHHHHhcCCC
Q 008016          350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-------------------RGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       350 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------------------~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      ..++++++.       .|+.   ..++.++|.+|...+                   .+++|+..+++++..        
T Consensus       268 ~~~~~al~~-------~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------  329 (472)
T 4g1t_A          268 ELLKKALEY-------IPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--------  329 (472)
T ss_dssp             HHHHHHHHH-------STTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHh-------CCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--------
Confidence            999999987       2333   445677888775432                   244555555555544        


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHH--
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIR--  487 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~--  487 (581)
                      .|....++..+|.+|...|++++|+.+|++++++     .+++......+..+|.+ +...|++++|+..|++++++.  
T Consensus       330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            3444457888999999999999999999999874     22222233345566654 457899999999999998642  


Q ss_pred             ---------------HHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          488 ---------------EIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       488 ---------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                                     +... ..+|..+.++..+|.+|...|+++ +|+++|++|+++.
T Consensus       405 ~~~~~~~~~~l~~~~~~~l-~~~p~~~~~~~~LG~~~~~~g~~~-~A~~~y~kALe~~  460 (472)
T 4g1t_A          405 SREKEKMKDKLQKIAKMRL-SKNGADSEALHVLAFLQELNEKMQ-QADEDSERGLESG  460 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred             cHHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC
Confidence                           1110 123444578999999999999999 9999999999853

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.96  E-value=4.8e-26  Score=230.24  Aligned_cols=350  Identities=13%  Similarity=0.074  Sum_probs=274.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc---
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL---  195 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---  195 (581)
                      ..+...|..+...|++++|+..|+++++.          .|....++..+|.++...|++++|+..++ ........   
T Consensus        60 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A           60 VFYSNISACYISTGDLEKVIEFTTKALEI----------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence            45888999999999999999999999987          77888999999999999999999999885 33211100   


Q ss_pred             ----------------------------------------------------------CCCcchHHHHHHHHHHHH----
Q 008016          196 ----------------------------------------------------------KDDEPLLDAILLHMGSMY----  213 (581)
Q Consensus       196 ----------------------------------------------------------~~~~~~~~~~~~~l~~~~----  213 (581)
                                                                                ....+........++..+    
T Consensus       129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  208 (537)
T 3fp2_A          129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD  208 (537)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence                                                                      000011111222222222    


Q ss_pred             ----HhccCHHHHHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          214 ----STLENYEKSMLVYQRVINVLESRYGKTSIL----LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       214 ----~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                          ...|++++|+..+++++...     ++++.    .+.++..+|.++...|++++|+..++++++.        .|.
T Consensus       209 ~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~  275 (537)
T 3fp2_A          209 EGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT  275 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC
Confidence                22346666666666666542     33332    4667999999999999999999999999987        344


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                       ..++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++..       
T Consensus       276 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------  339 (537)
T 3fp2_A          276 -PNSYIFLALTLADKENSQEFFKFFQKAVDL--------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-------  339 (537)
T ss_dssp             -HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             -chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------
Confidence             678999999999999999999999999986        3455678999999999999999999999999987       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      .|+.   ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..++++++..
T Consensus       340 ~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          340 NPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKF--------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             CTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            2332   2456889999999999999999999998872        3334578889999999999999999999999976


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHL----------NRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  515 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  515 (581)
                      ...  +........+..+|.++...          |++++|+.+++++++..        |....++..+|.++...|++
T Consensus       409 ~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~~~~g~~  478 (537)
T 3fp2_A          409 EVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--------PRSEQAKIGLAQLKLQMEKI  478 (537)
T ss_dssp             HHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCH
T ss_pred             Ccc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccH
Confidence            443  12222333467788999999          99999999999998863        34447899999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 008016          516 DTKLLELLKRVLRIQ  530 (581)
Q Consensus       516 ~~~A~~~~~~a~~~~  530 (581)
                      + +|+..|++++++.
T Consensus       479 ~-~A~~~~~~al~~~  492 (537)
T 3fp2_A          479 D-EAIELFEDSAILA  492 (537)
T ss_dssp             H-HHHHHHHHHHHHC
T ss_pred             H-HHHHHHHHHHHhC
Confidence            9 9999999999864

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.96  E-value=2.2e-25  Score=214.59  Aligned_cols=355  Identities=9%  Similarity=-0.021  Sum_probs=272.2

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH-HHHHHHhccCHHHHH-----------HH
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH-MGSMYSTLENYEKSM-----------LV  225 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~-----------~~  225 (581)
                      .++......+-...+...+++++|..+++.+.........+ +.....+.. ..+.....++++.+.           ..
T Consensus         8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~   86 (383)
T 3ulq_A            8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEED-QDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL   86 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence            34444455555566778999999999999988777554333 333221111 122333345555554           55


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Q 008016          226 YQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVD  305 (581)
Q Consensus       226 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  305 (581)
                      +++.-......   +.......++..|..+...|++++|+.++++++++.+..  ++.+..+.++..+|.+|...|++++
T Consensus        87 ~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~  161 (383)
T 3ulq_A           87 LLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYF  161 (383)
T ss_dssp             HHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            55433211110   011123345669999999999999999999999987653  4556688999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016          306 AESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (581)
Q Consensus       306 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (581)
                      |+.++.+++++.++. +...+..+.++.++|.+|...|++++|+.++++++++.++.    ++++....++.++|.+|..
T Consensus       162 A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~  236 (383)
T 3ulq_A          162 SMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE----KQPQLMGRTLYNIGLCKNS  236 (383)
T ss_dssp             HHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHH
Confidence            999999999998765 22256678899999999999999999999999999998863    5667778889999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 008016          386 VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGI  465 (581)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  465 (581)
                      .|++++|+.++++++.+.+..  .+.+....++.++|.++...|++++|+.++++++++....   .++.....+..++.
T Consensus       237 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~  311 (383)
T 3ulq_A          237 QSQYEDAIPYFKRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKS  311 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Confidence            999999999999999998765  2337778899999999999999999999999999988775   23444445678999


Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          466 TLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       466 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      ++...|++    ..+++++...++.  ...+....++..+|.+|...|+++ +|..++++++++.+++..
T Consensus       312 ~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~i~~  374 (383)
T 3ulq_A          312 LYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQ-KASAYFLKVEQVRQLIQG  374 (383)
T ss_dssp             HHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTSCSS
T ss_pred             HHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhc
Confidence            99999995    3445555554443  455777788999999999999999 999999999998876544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.96  E-value=2.3e-25  Score=214.42  Aligned_cols=351  Identities=12%  Similarity=0.077  Sum_probs=270.3

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHHcCChHHHH-----------
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII--ALGYVYIGDLKFVQ-----------  182 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~-----------  182 (581)
                      +.+...+......+..+++++|..+++++.+....    ...+++. ..++.+  .......++++.+.           
T Consensus        10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~~~-~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~   84 (383)
T 3ulq_A           10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQ----MEEDQDL-HLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLS   84 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----SCCCHHH-HHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh----hccchHH-HHHHHHHHHHHHHHHhhcCcccccccccccchh
Confidence            45666888888899999999999999998665432    1122222 222322  22222334444444           


Q ss_pred             HHHHHHHHHHhhcCCCcchH--HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Q 008016          183 SLLDMMSGIVDSLKDDEPLL--DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR  260 (581)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  260 (581)
                      ..++.+....    ......  ...++..|..+...|++++|+.++++++.+.+..  ++.+..+.++..+|.+|...|+
T Consensus        85 ~~~~~i~~~~----~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~  158 (383)
T 3ulq_A           85 DLLLEIDKKQ----ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQ  158 (383)
T ss_dssp             HHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHhcC----CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence            5555433221    111111  2345568999999999999999999999876553  4556688999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (581)
                      +++|+.++++++++.+.. +...+..+.++..+|.+|...|++++|+.++++++++.++.  ++.+..+.++.++|.+|.
T Consensus       159 ~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHH
Confidence            999999999999998774 22256778899999999999999999999999999998876  556678889999999999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 008016          341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLN  420 (581)
Q Consensus       341 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  420 (581)
                      ..|++++|+.++++++++.+..    .+.+....++.++|.++...|++++|+.++++++.+....   ..+.....+..
T Consensus       236 ~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~  308 (383)
T 3ulq_A          236 SQSQYEDAIPYFKRAIAVFEES----NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEF  308 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT----TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH
Confidence            9999999999999999998763    3325557888999999999999999999999999998765   23444445778


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCC
Q 008016          421 LAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      +|.++...|++    ..+++++...++.  ...+....++..+|.+|...|++++|..++++++++.+++...
T Consensus       309 l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~  375 (383)
T 3ulq_A          309 LKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG  375 (383)
T ss_dssp             HHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred             HHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999995    3444444444443  3456777788999999999999999999999999988765443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.96  E-value=9.1e-25  Score=217.30  Aligned_cols=350  Identities=11%  Similarity=0.038  Sum_probs=293.4

Q ss_pred             HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 008016          119 LELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSG  190 (581)
Q Consensus       119 ~~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  190 (581)
                      ...+..+..+..    .+++++|+.+|+++.+.            ..+.+++.+|.+|..    .+++++|+.+|+++.+
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  107 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL  107 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            346777888887    89999999999999752            346789999999999    9999999999999865


Q ss_pred             HHhhcCCCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHH
Q 008016          191 IVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAK  262 (581)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  262 (581)
                      .      .   ...+++.+|.+|..    .+++++|+.+|+++.+.       +   ...++..+|.+|..    .++++
T Consensus       108 ~------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~d~~  168 (490)
T 2xm6_A          108 K------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------G---RDSGQQSMGDAYFEGDGVTRDYV  168 (490)
T ss_dssp             T------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             C------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            3      1   23467889999998    89999999999998763       2   25678999999998    88999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (581)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (581)
                      +|+.+|+++.+.          ....++..+|.+|..    .+++++|..+|+++.+.          ....++..+|.+
T Consensus       169 ~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~  228 (490)
T 2xm6_A          169 MAREWYSKAAEQ----------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------GDELGQLHLADM  228 (490)
T ss_dssp             HHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence            999999999864          136788999999998    89999999999999863          224678899999


Q ss_pred             HHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          339 KCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       339 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      |..    .+++++|+.+|+++++.         .+   ..++.++|.+|..    .+++++|+.+|+++.+.       .
T Consensus       229 y~~g~g~~~~~~~A~~~~~~a~~~---------~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-------~  289 (490)
T 2xm6_A          229 YYFGIGVTQDYTQSRVLFSQSAEQ---------GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-------G  289 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-------T
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-------C
Confidence            997    89999999999998763         11   3456889999998    89999999999998653       2


Q ss_pred             ChHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC---ChHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRS-----KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN---RDKEAEKLVLE  482 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~  482 (581)
                      +   ..++..+|.+|...     +++++|+.+|+++.+.       .   ...++..+|.+|...|   ++++|+.+|++
T Consensus       290 ~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~  356 (490)
T 2xm6_A          290 N---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK  356 (490)
T ss_dssp             C---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             C---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            2   34788999999998     9999999999999872       2   2357899999999877   88999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----
Q 008016          483 ALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----  554 (581)
Q Consensus       483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----  554 (581)
                      +++.       ++   ..++..+|.+|..    .++++ +|+.+|+++.+.       ++   ..++..||.+|..    
T Consensus       357 a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          357 AAAK-------GE---KAAQFNLGNALLQGKGVKKDEQ-QAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             HHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSS
T ss_pred             HHHC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCC
Confidence            9862       23   3789999999999    88888 999999999872       22   5678999999999    


Q ss_pred             cCChhhhHHHHHHHHHHH
Q 008016          555 LGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       555 ~g~~~~A~~~~~~a~~l~  572 (581)
                      .+++++|..+|+++++..
T Consensus       416 ~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          416 ERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC
Confidence            899999999999999998

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=6.1e-27  Score=224.61  Aligned_cols=314  Identities=17%  Similarity=0.170  Sum_probs=242.9

Q ss_pred             HHHHcCChHHHHH-HHHHHHHHHhhcCCCcch-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008016          171 GYVYIGDLKFVQS-LLDMMSGIVDSLKDDEPL-LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSL  248 (581)
Q Consensus       171 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  248 (581)
                      ++...|++++|+. .++++....    +..|. ....++.+|.++...|++++|+..|++++..        .|....++
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  101 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFE----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAW  101 (368)
T ss_dssp             ------------CHHHHCCCCCC----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcC----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            5667799999998 888766543    22222 2345788999999999999999999999874        23346788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRV  328 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  328 (581)
                      ..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++...     ++.+..
T Consensus       102 ~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~  168 (368)
T 1fch_A          102 QYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-----PAYAHL  168 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTGGG
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----cCcHHH
Confidence            99999999999999999999999987        45567889999999999999999999999998753     222111


Q ss_pred             -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 008016          329 -------------GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (581)
Q Consensus       329 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (581)
                                   ...+..++.++ ..|++++|+.+++++++..       |+.. ...++..+|.++...|++++|+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-------p~~~-~~~~~~~l~~~~~~~g~~~~A~~~  239 (368)
T 1fch_A          169 VTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDC  239 (368)
T ss_dssp             CC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-------cCcc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence                         11122466666 8899999999999999872       2211 245678999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016          396 LEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       396 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (581)
                      +++++..        .|....++..+|.++...|++++|+..+++++.+        .|....++..+|.++...|++++
T Consensus       240 ~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~  303 (368)
T 1fch_A          240 FTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHRE  303 (368)
T ss_dssp             HHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence            9999987        2344568899999999999999999999999985        45667789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCC---CChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          476 AEKLVLEALYIREIAFGK---DSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       476 A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      |+.++++++++.....++   .++....++..++.++...|+++ +|...++++++.+.+.++
T Consensus       304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~l~~~~~~~~  365 (368)
T 1fch_A          304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD-AYGAADARDLSTLLTMFG  365 (368)
T ss_dssp             HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG-GHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH-hHHHhHHHHHHHHHHhcC
Confidence            999999999987433111   12344688999999999999999 999999999988877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.95  E-value=1.2e-26  Score=222.61  Aligned_cols=312  Identities=16%  Similarity=0.073  Sum_probs=243.2

Q ss_pred             HHHhccCHHHHHH-HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016          212 MYSTLENYEKSML-VYQRVINVLESRYGKTSI-LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (581)
Q Consensus       212 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (581)
                      ++...|++++|+. .|++++.+.     ++.| .....+..+|.++...|++++|+..++++++.        .|....+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~  100 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA  100 (368)
T ss_dssp             ------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence            5667799999999 888887642     2222 23456789999999999999999999999986        4566788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (581)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (581)
                      +..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..+++++...       |+.
T Consensus       101 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~  165 (368)
T 1fch_A          101 WQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAY  165 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCc
Confidence            999999999999999999999999986        34556789999999999999999999999999863       222


Q ss_pred             hHHH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          370 SIME-------------NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       370 ~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                      ....             ..+..++.++ ..|++++|+.++++++...     +..+ ...++..+|.++...|++++|+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A~~  238 (368)
T 1fch_A          166 AHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-----PTSI-DPDVQCGLGVLFNLSGEYDKAVD  238 (368)
T ss_dssp             GGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-----TTSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-----cCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence            2211             1112466666 8999999999999998863     2211 45688899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          437 LLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       437 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                      ++++++.+        .|....++..+|.++...|++++|+..+++++++.        |....++..+|.++...|+++
T Consensus       239 ~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          239 CFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHH
Confidence            99999985        45566789999999999999999999999998853        344578999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          517 TKLLELLKRVLRIQEREFGS---ESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       517 ~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                       +|+..+++++++.....++   .++....++..+|.+|...|++++|..+++++++..++.
T Consensus       303 -~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  363 (368)
T 1fch_A          303 -EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM  363 (368)
T ss_dssp             -HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHh
Confidence             9999999999986543111   112236789999999999999999999999998876653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-26  Score=215.60  Aligned_cols=298  Identities=14%  Similarity=0.131  Sum_probs=248.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ..+...+..++..|++++|+.+|+++++.          .|....++..++.++...|++++|+..++++....      
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------   86 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK----------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------   86 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC------
Confidence            34788899999999999999999999876          66667788889999999999999999999988764      


Q ss_pred             cchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                       |....++..+|.++...| ++++|+.++++++...        |....++..+|.++...|++++|+..++++++.   
T Consensus        87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---  154 (330)
T 3hym_B           87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL---  154 (330)
T ss_dssp             -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred             -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence             333456889999999999 9999999999998752        233567899999999999999999999999988   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           .|....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++.
T Consensus       155 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          155 -----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--------APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             -----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                 3344566778999999999999999999999875        345567899999999999999999999999999


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERL  437 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (581)
                      ....... ....+....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+
T Consensus       222 ~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          222 KIKAIGN-EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHTTTSC-SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             Hhhhccc-cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHH
Confidence            8765311 11113335577899999999999999999999999873        33456788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHH-HHcCChH
Q 008016          438 LRICLDIMTKTVGPDDQSISFPMLHLGITL-YHLNRDK  474 (581)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  474 (581)
                      +++++++        .|....++..++.++ ...|+.+
T Consensus       293 ~~~al~~--------~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          293 FHTALGL--------RRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHTTTTT--------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHcc--------CCCchHHHHHHHHHHHHHhCchh
Confidence            9999873        466677888999988 4556543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.95  E-value=4.8e-24  Score=204.69  Aligned_cols=335  Identities=12%  Similarity=0.051  Sum_probs=256.8

Q ss_pred             HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH--HHHhccCHHHHH---------HHHHHHHHHHHHHcCCC
Q 008016          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGS--MYSTLENYEKSM---------LVYQRVINVLESRYGKT  240 (581)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~---------~~~~~al~~~~~~~~~~  240 (581)
                      +...+++++|..+++.+.........+ ..+. .++.+-.  .....+.+..+.         ..+++.-......   +
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~-~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~---~   96 (378)
T 3q15_A           22 MIRQFSVPDAEILKAEVEQDIQQMEED-QDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL---T   96 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHGGGBCCC-HHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH---H
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHhccc-HHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC---c
Confidence            377899999999999988777665433 3332 2233222  222234443333         4444332111110   1


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      +......++..|..+...|++++|+.++++++++....  ++.+..+.++..+|.+|...|++++|+.++++++++.++.
T Consensus        97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~  174 (378)
T 3q15_A           97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH  174 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence            12233467789999999999999999999999987664  4567788999999999999999999999999999998764


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                      . ...+..+.++.++|.+|...|++++|+.++++++++.++.    ++......++.++|.+|...|++++|+.++++++
T Consensus       175 ~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          175 P-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI----QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             C-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1 1134578899999999999999999999999999998763    4556677889999999999999999999999999


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC---hHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR---DKEAE  477 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~  477 (581)
                      .+.+..   .+|....++..+|.++...|++++|+.++++++++....   .++.....+..++.++...|+   +.+|+
T Consensus       250 ~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~ly~~~~~~~~~~~al  323 (378)
T 3q15_A          250 KVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAVYKETVDERKIHDLL  323 (378)
T ss_dssp             HHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            988765   345568899999999999999999999999999975543   234455567788888888888   55555


Q ss_pred             HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 008016          478 KLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREF  534 (581)
Q Consensus       478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~  534 (581)
                      .++++       .  ...+.....+..+|.+|...|+++ +|..+|++++++.++..
T Consensus       324 ~~~~~-------~--~~~~~~~~~~~~la~~y~~~g~~~-~A~~~~~~al~~~~~~~  370 (378)
T 3q15_A          324 SYFEK-------K--NLHAYIEACARSAAAVFESSCHFE-QAAAFYRKVLKAQEDIL  370 (378)
T ss_dssp             HHHHH-------T--TCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-------C--CChhHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHh
Confidence            55544       2  345667788889999999999999 99999999999876653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.95  E-value=8.1e-25  Score=204.48  Aligned_cols=285  Identities=22%  Similarity=0.220  Sum_probs=234.6

Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      .++++|....++..+|.++...|++++|+.++++++++.....+++++....++..+|.++...|++++|+.++++++..
T Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999988877778889999999999999999999999999999999


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                      .+..  .+++++....++..+|.++...|++++|+.++++++.+..+..+.+++....++..+|.++...|++++|+.++
T Consensus        99 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A           99 REKT--LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHH--hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8764  34566777888999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-cCCCChh------HHHHHHHHHHHHHH
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLP------VGEALDCLVSIQTR  511 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~------~~~~~~~la~~~~~  511 (581)
                      ++++.+.....+++++....++..+|.++...|++++|..++++++++.... ++...+.      ....+..++..+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            9999998888777888889999999999999999999999999999876432 1111111      22334444555555


Q ss_pred             cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          512 LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       512 ~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      .+.+. +|...++++..        .+|....++..+|.+|..+|++++|..+|++++++.++
T Consensus       257 ~~~~~-~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFG-EYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSC-CCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHH-HHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            66666 66666666654        56888999999999999999999999999999998754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.95  E-value=4.2e-26  Score=218.43  Aligned_cols=294  Identities=15%  Similarity=0.106  Sum_probs=228.1

Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      .....++.+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..|++++++      
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------  128 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--------PGDAEAWQFLGITQAENENEQAAIVALQRCLEL------  128 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence            334557899999999999999999999999862        233678999999999999999999999999998      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG--RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                        .|....++..+|.+|...|++++|+..++++++...........  .....+..+|.++...|++++|+.++++++..
T Consensus       129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  206 (365)
T 4eqf_A          129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ  206 (365)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred             --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence              45667899999999999999999999999999875433111100  12344566799999999999999999999987


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                             .|+.. ...++.++|.++...|++++|+.++++++...        |....++..+|.++...|++++|+..|
T Consensus       207 -------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~  270 (365)
T 4eqf_A          207 -------NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--------PEDYSLWNRLGATLANGDRSEEAVEAY  270 (365)
T ss_dssp             -------SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                   23310 13467899999999999999999999999872        444568999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChh----HHHHHHHHHHHHHHcCC
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLP----VGEALDCLVSIQTRLGE  514 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~  514 (581)
                      ++++++        +|....++..+|.++...|++++|+.+|++++++.....++.++.    ...++..++.++...|+
T Consensus       271 ~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          271 TRALEI--------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             HHHHhc--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            999985        466678899999999999999999999999999886544332221    24678999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhcC
Q 008016          515 DDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       515 ~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      .+ .+.....+.+...++.++
T Consensus       343 ~~-~a~~~~~~~l~~~~~~~~  362 (365)
T 4eqf_A          343 PE-LFQAANLGDLDVLLRAFN  362 (365)
T ss_dssp             HH-HHHHHHTTCCGGGTTTTT
T ss_pred             HH-HHHHHHHhhHHHHHHhcC
Confidence            98 887777766665544443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=212.45  Aligned_cols=301  Identities=13%  Similarity=0.118  Sum_probs=246.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG  238 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  238 (581)
                      +.....+..+|..+...|++++|+..+++++...       |....++..++.++...|++++|+..+++++...     
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----   86 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-------PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-----   86 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----
Confidence            4445678889999999999999999999987764       2223356678889999999999999999998852     


Q ss_pred             CCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          239 KTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       239 ~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                         |....++..+|.++...| ++++|+.++++++..        .|....++..+|.++...|++++|+..++++++..
T Consensus        87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  155 (330)
T 3hym_B           87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM  155 (330)
T ss_dssp             ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence               223567899999999999 999999999999876        45556789999999999999999999999999872


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                              |....++..+|.++...|++++|+.+++++++.       .|+.   ..++..+|.++...|++++|+.+++
T Consensus       156 --------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          156 --------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-------APED---PFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             --------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcccHHHHHHHHH
Confidence                    333456777999999999999999999999875       2333   4567899999999999999999999


Q ss_pred             HHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016          398 ECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (581)
Q Consensus       398 ~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (581)
                      +++........... +....++..+|.++...|++++|+.++++++++        .|....++..+|.++...|++++|
T Consensus       218 ~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          218 DALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--------IPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------CccchHHHHHHHHHHHHhccHHHH
Confidence            99998755422221 444568899999999999999999999999985        345567889999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH-HHcCCCh
Q 008016          477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ-TRLGEDD  516 (581)
Q Consensus       477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~  516 (581)
                      ..++++++++.        |....++..++.++ ...|+.+
T Consensus       290 ~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          290 VDYFHTALGLR--------RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHTTTTTC--------SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHccC--------CCchHHHHHHHHHHHHHhCchh
Confidence            99999998643        44447788899988 4555543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.94  E-value=2.6e-25  Score=212.92  Aligned_cols=286  Identities=15%  Similarity=0.041  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .++..|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++...       
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------  129 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------  129 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence            3778899999999999999999999987          77778899999999999999999999999998874       


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      |....++..+|.+|...|++++|+..+++++.+..........  .....+..+|.++...|++++|+.+++++++.   
T Consensus       130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---  206 (365)
T 4eqf_A          130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---  206 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---
Confidence            4445678999999999999999999999999875443111100  12344566799999999999999999999997   


Q ss_pred             hcCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          278 NRGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       278 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                           .|.  ...++..+|.++...|++++|+.+++++++.        .|....++.++|.++...|++++|+..++++
T Consensus       207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  273 (365)
T 4eqf_A          207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA  273 (365)
T ss_dssp             -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                 333  5678999999999999999999999999986        3455678999999999999999999999999


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHccCH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS----FVTHLLNLAASYSRSKNF  431 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~  431 (581)
                      +++       .|+.   ..++.++|.++...|++++|+.++++++.+.....+..++.    ...++..++.++...|+.
T Consensus       274 l~~-------~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  343 (365)
T 4eqf_A          274 LEI-------QPGF---IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP  343 (365)
T ss_dssp             HHH-------CTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred             Hhc-------CCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence            987       2333   55678999999999999999999999999986643332221    356889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 008016          432 VEAERLLRICLDIMTKT  448 (581)
Q Consensus       432 ~~A~~~~~~al~~~~~~  448 (581)
                      +.+....++.++...+.
T Consensus       344 ~~a~~~~~~~l~~~~~~  360 (365)
T 4eqf_A          344 ELFQAANLGDLDVLLRA  360 (365)
T ss_dssp             HHHHHHHTTCCGGGTTT
T ss_pred             HHHHHHHHhhHHHHHHh
Confidence            99998887766654443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.94  E-value=3.5e-24  Score=205.62  Aligned_cols=348  Identities=15%  Similarity=0.093  Sum_probs=261.9

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHcCChHHHH---------HH
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALG--YVYIGDLKFVQ---------SL  184 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~---------~~  184 (581)
                      +.+..++......+..+++++|..+++++......    ...+. ....++.+...  ....+.+..+.         ..
T Consensus        10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~----~~~~~-~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~   84 (378)
T 3q15_A           10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQ----MEEDQ-DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL   84 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGG----BCCCH-HHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH----hcccH-HHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence            44556777777788999999999999987654322    11122 22233333222  22233433333         44


Q ss_pred             HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 008016          185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKA  264 (581)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  264 (581)
                      ++.+......  .++......++..|..+...|++++|+.+|++++.+....  ++.+..+.++..+|.+|...|++++|
T Consensus        85 l~~i~~~~~~--~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A  160 (378)
T 3q15_A           85 LETIETPQKK--LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVS  160 (378)
T ss_dssp             HHHHHGGGHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhccCCC--CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHH
Confidence            4443322111  0112223356778999999999999999999999887653  45577899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (581)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (581)
                      +.++++++++.+... ...+..+.++..+|.+|...|++++|+.++++++++.++.  ++.+..+.++.++|.+|...|+
T Consensus       161 ~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~  237 (378)
T 3q15_A          161 MYHILQALDIYQNHP-LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGD  237 (378)
T ss_dssp             HHHHHHHHHHHHTST-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCC
Confidence            999999999987641 1234678899999999999999999999999999998765  4455678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016          345 AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (581)
Q Consensus       345 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (581)
                      +++|+.++++++.+.+..     .++....++.++|.++...|++++|+.++++++.+..+.   ..+.....+..++.+
T Consensus       238 ~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~l  309 (378)
T 3q15_A          238 DQMAVEHFQKAAKVSREK-----VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---SHKFYKELFLFLQAV  309 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---CCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence            999999999999988763     233337788999999999999999999999999986543   234444467888999


Q ss_pred             HHHccC---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcC
Q 008016          425 YSRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFG  492 (581)
Q Consensus       425 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  492 (581)
                      +...|+   +.+|+.++++.         ...+.....+..+|.+|...|++++|..+|++++++.++...
T Consensus       310 y~~~~~~~~~~~al~~~~~~---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~  371 (378)
T 3q15_A          310 YKETVDERKIHDLLSYFEKK---------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK  371 (378)
T ss_dssp             HSSSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHhC---------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence            999888   55555555542         345666778889999999999999999999999998876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.5e-24  Score=201.17  Aligned_cols=284  Identities=21%  Similarity=0.240  Sum_probs=234.5

Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                      ..++++|....++..+|.++...|++++|+.++++++.+.....+++.+....++..+|.++...|++++|+.++++++.
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           18 GGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA   97 (311)
T ss_dssp             SSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34677888999999999999999999999999999999998887778889999999999999999999999999999999


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (581)
                      ..+...+++.+....++..+|.++...|++++|+.++++++++.+...+++++....++..+|.++...|++++|+.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99888777889999999999999999999999999999999999888888888999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChH------HHHHHHHHHHHHH
Q 008016          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-KGKEHPS------FVTHLLNLAASYS  426 (581)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~------~~~~~~~la~~~~  426 (581)
                      +++...+..  .+++.+....++..+|.++...|++++|+.++++++...... ++...+.      ....+..++..+.
T Consensus       178 ~a~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
T 3nf1_A          178 RALEIYQTK--LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK  255 (311)
T ss_dssp             HHHHHHHHT--SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence            999998764  455677778889999999999999999999999999876542 1111111      2233344445555


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ..+.+.+|...++++..        .+|....++..+|.+|...|++++|..++++++++.
T Consensus       256 ~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          256 DGTSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             --CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            56666667777776654        467888899999999999999999999999999875

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=6.1e-23  Score=204.15  Aligned_cols=352  Identities=13%  Similarity=0.008  Sum_probs=285.5

Q ss_pred             HHHHHHHHHHHH----cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 008016          119 LELFNEVKSMIM----MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----IGDLKFVQSLLDMMSG  190 (581)
Q Consensus       119 ~~l~~~~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  190 (581)
                      ...+.++..+..    .+++++|+.+|+++.+.            ..+.++..+|.+|..    .+++++|+.+++++..
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            347778888888    99999999999999752            345678899999998    8999999999999765


Q ss_pred             HHhhcCCCcchHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHH
Q 008016          191 IVDSLKDDEPLLDAILLHMGSMYST----LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAK  262 (581)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~  262 (581)
                      .         ....+++.+|.+|..    .+++++|+.+|+++.+.       .   ...++..+|.+|..    .++++
T Consensus       144 ~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~  204 (490)
T 2xm6_A          144 Q---------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------G---NVWSCNQLGYMYSRGLGVERNDA  204 (490)
T ss_dssp             T---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             C---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHhcCCCCCcCHH
Confidence            3         124567899999997    88999999999999873       2   25788999999998    89999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (581)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (581)
                      +|+.+|+++.+.       +   ...++..+|.+|..    .+++++|..+|+++.+.          ....++..+|.+
T Consensus       205 ~A~~~~~~a~~~-------~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~  264 (490)
T 2xm6_A          205 ISAQWYRKSATS-------G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHH
Confidence            999999999864       1   25678899999997    89999999999998763          234678899999


Q ss_pred             HHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHHHHHhcCC
Q 008016          339 KCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV-----GRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       339 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      |..    .+++++|+.+|+++.+.         .+   ..++..+|.+|...     +++++|+.+|+++.+.       
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~---------~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-------  325 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQ---------GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-------  325 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTT---------TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-------
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHc---------CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-------
Confidence            999    99999999999998753         12   33568899999998     9999999999998764       


Q ss_pred             CChHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRSK---NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLE  482 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~  482 (581)
                      .+   ..++.++|.+|...|   ++++|+.+|+++.+.          ....++..+|.+|..    .+++++|+.+|++
T Consensus       326 ~~---~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  392 (490)
T 2xm6_A          326 GD---ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK  392 (490)
T ss_dssp             TC---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CC---HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            12   357889999999866   899999999999872          234688999999999    8999999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCh
Q 008016          483 ALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRK  558 (581)
Q Consensus       483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  558 (581)
                      +.+.       .+   ..++..||.+|..    .++.+ +|+.+|+++++..     ++.|....+...++.++....+.
T Consensus       393 A~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~-~A~~~~~~A~~~~-----~~~~~~~~a~~~l~~~~~~~~~~  456 (490)
T 2xm6_A          393 AAEQ-------GL---SAAQVQLGEIYYYGLGVERDYV-QAWAWFDTASTND-----MNLFGTENRNITEKKLTAKQLQQ  456 (490)
T ss_dssp             HHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHHH-----CCHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHhC-------CC---HHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC-----CCCcCCHHHHHHHHhcCHhHHHH
Confidence            9762       23   3688999999998    89999 9999999999853     22366777888888877654332


Q ss_pred             hh--hHHHHHHHH
Q 008016          559 EE--KFPLKKRLS  569 (581)
Q Consensus       559 ~~--A~~~~~~a~  569 (581)
                      .+  |..+++++.
T Consensus       457 a~~~a~~~~~~~~  469 (490)
T 2xm6_A          457 AELLSQQYIEKYA  469 (490)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            22  555555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.93  E-value=1.9e-23  Score=192.17  Aligned_cols=271  Identities=21%  Similarity=0.172  Sum_probs=228.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      ....|++++|+.+++++++..++..+.+++....++..+|.++...|++++|+.++++++++.++.  .+++++....++
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~   88 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT--LGKDHPAVAATL   88 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCTTCHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH--cCCcchHHHHHH
Confidence            456799999999999999999999888889999999999999999999999999999999998764  456678888899


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      .++|.++...|++++|+.++++++.+.++..++++|....++.++|.++...|++++|+.++++++++.....++++|..
T Consensus        89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  168 (283)
T 3edt_B           89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV  168 (283)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            99999999999999999999999999998888888999999999999999999999999999999999988888888999


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH-cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFG  535 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~  535 (581)
                      ..++..+|.++...|++++|+.++++++++.... .+..++.....+..++..+...+... .+. .+..+..... ..+
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~~  245 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR-DSA-PYGEYGSWYK-ACK  245 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC-C--------------CCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh-HHH-HHHHHHHHHH-hcC
Confidence            9999999999999999999999999999986543 33334445556667777776666554 433 3444544443 345


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          536 SESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       536 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                      ..+|....++..+|.+|..+|++++|..+|++++++.
T Consensus       246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            5779999999999999999999999999999998753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.92  E-value=4.8e-23  Score=189.47  Aligned_cols=270  Identities=20%  Similarity=0.183  Sum_probs=226.0

Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (581)
                      ....|++++|+.+|++++++..+..+.+++....++..+|.++...|++++|+.++++++++.+...+++++....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            35689999999999999999999988888999999999999999999999999999999999988888888999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016          293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (581)
Q Consensus       293 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (581)
                      +|.++...|++++|+.+++++++..++..+++++....++.++|.++...|++++|+.++++++++.+..  .+++++..
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~  168 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--LGPDDPNV  168 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--SCTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence            9999999999999999999999999998888889999999999999999999999999999999998765  45667777


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (581)
                      ..++.++|.++...|++++|+.++++++.+.... .+...+.....+..++..+...+....+.. +..+...... ...
T Consensus       169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~  246 (283)
T 3edt_B          169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKA-CKV  246 (283)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------C-CCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHh-cCC
Confidence            8889999999999999999999999999986553 223344444566667777666555544443 3444443332 345


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          452 DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      .++....++..+|.+|...|++++|..++++++++
T Consensus       247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            67888889999999999999999999999999864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=1.9e-23  Score=196.69  Aligned_cols=285  Identities=16%  Similarity=0.058  Sum_probs=231.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      ....+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|...++++++.       
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence            3456788999999999999999999999987        4556788999999999999999999999999986       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH----------HHH-HH-HHHHcCChHH
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR----------IDL-AE-LLHIVGRGQE  391 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------~~l-a~-~~~~~g~~~~  391 (581)
                       .|....++..+|.++...|++++|+..+++++...       +.........          ..+ +. ++...|++++
T Consensus        85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (327)
T 3cv0_A           85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE  156 (327)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTTTC--------------------CCTTSHHHHHH
T ss_pred             -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence             34456788999999999999999999999998762       2222111110          112 44 5788899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (581)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (581)
                      |+.++++++...        |....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|
T Consensus       157 A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          157 CRTLLHAALEMN--------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             HHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Confidence            999999998762        334568899999999999999999999999985        4555678899999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH----HHHHHHHH
Q 008016          472 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE----EVMLTLKK  547 (581)
Q Consensus       472 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~  547 (581)
                      ++++|+..++++++..        |....++..+|.++...|+++ +|+..+++++++..........    ....++..
T Consensus       221 ~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  291 (327)
T 3cv0_A          221 RPQEALDAYNRALDIN--------PGYVRVMYNMAVSYSNMSQYD-LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF  291 (327)
T ss_dssp             CHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhccHH-HHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence            9999999999998753        334467899999999999999 9999999999876432111111    16788999


Q ss_pred             HHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          548 VVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       548 la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ++.++...|++++|...+++++...++.-
T Consensus       292 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~  320 (327)
T 3cv0_A          292 FRMLLNVMNRPDLVELTYAQNVEPFAKEF  320 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence            99999999999999999999998877653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.92  E-value=2.7e-23  Score=195.64  Aligned_cols=279  Identities=11%  Similarity=0.028  Sum_probs=229.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      ++..|..+...|++++|+.+|+++++.          .|....++..+|.++...|++++|+..++++....       |
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~   86 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------P   86 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------c
Confidence            678889999999999999999999986          67778899999999999999999999999988764       3


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH-------------H-HH-HHHhcCCHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG-------------M-AK-VLGSIGRAKKAV  265 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-------------l-a~-~~~~~g~~~~A~  265 (581)
                      ....++..+|.++...|++++|+..+++++.....     .   ...+..             + +. ++...|++++|+
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-----Y---EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-----T---TTC--------------------CCTTSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----c---HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            34567889999999999999999999999875321     1   112222             2 44 588899999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                      ..++++++.        .|....++..+|.++...|++++|..+++++++.        .|....++..+|.++...|++
T Consensus       159 ~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          159 TLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             HHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCH
Confidence            999999987        4456788999999999999999999999999986        344567889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----ChHHHHHHHHH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE----HPSFVTHLLNL  421 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~l  421 (581)
                      ++|+..++++++.       .++.   ..++..+|.++...|++++|+.++++++.......+..    ......++..+
T Consensus       223 ~~A~~~~~~a~~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l  292 (327)
T 3cv0_A          223 QEALDAYNRALDI-------NPGY---VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFF  292 (327)
T ss_dssp             HHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-------CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHH
Confidence            9999999999986       2332   34668899999999999999999999998863321111    11156789999


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcC
Q 008016          422 AASYSRSKNFVEAERLLRICLDIMTKTVG  450 (581)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~~~~~~  450 (581)
                      |.++...|++++|...++++++...+..+
T Consensus       293 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~  321 (327)
T 3cv0_A          293 RMLLNVMNRPDLVELTYAQNVEPFAKEFG  321 (327)
T ss_dssp             HHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence            99999999999999999999888766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.92  E-value=3.4e-21  Score=184.73  Aligned_cols=311  Identities=11%  Similarity=0.000  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ...++..+|.++...|++++|+.++++++...    ..++ .....++..+|.++...|++++|...+++++.+....  
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--   86 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--   86 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence            34567788999999999999999999998854    2222 3456688999999999999999999999999987763  


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                      ++......++..+|.++...|++++|+.+++++++..+...+..++....++.++|.++...|++++|..++++++.+..
T Consensus        87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            23334566788999999999999999999999999988764444567788899999999999999999999999999865


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                      ..     .++....++..+|.++...|++++|..++++++.+....  ..... .......++.++...|++++|..+++
T Consensus       167 ~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  239 (373)
T 1hz4_A          167 SY-----QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG--KYHSDWISNANKVRVIYWQMTGDKAAAANWLR  239 (373)
T ss_dssp             TS-----CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cc-----CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            42     122245678899999999999999999999999875432  11111 11122245566889999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKL  519 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A  519 (581)
                      +++...    ..........+..++.++...|++++|...+++++......  +..+....++..++.++...|+.+ +|
T Consensus       240 ~a~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A  312 (373)
T 1hz4_A          240 HTAKPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-DA  312 (373)
T ss_dssp             HSCCCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-HH
T ss_pred             hCCCCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHH-HH
Confidence            887521    11112223356789999999999999999999999987653  223345568889999999999999 99


Q ss_pred             HHHHHHHHHHHHH
Q 008016          520 LELLKRVLRIQER  532 (581)
Q Consensus       520 ~~~~~~a~~~~~~  532 (581)
                      ...+++++.+...
T Consensus       313 ~~~l~~al~~~~~  325 (373)
T 1hz4_A          313 QRVLLDALKLANR  325 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999998764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.91  E-value=3.3e-21  Score=184.80  Aligned_cols=313  Identities=11%  Similarity=0.055  Sum_probs=246.2

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      ...++..+|.++...|++++|...+++++....  ..+......++..+|.++...|++++|...+++++.+.+..  .+
T Consensus        13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~   88 (373)
T 1hz4_A           13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DV   88 (373)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--Cc
Confidence            356677889999999999999999999887652  12223345678899999999999999999999999988764  23


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      ......++..+|.++...|++++|+.+++++++......+..++....++.++|.++...|++++|..+++++++.....
T Consensus        89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            34556778999999999999999999999999998876544457778889999999999999999999999999875432


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                         .++....++..+|.++...|++++|..++++++.+....   +............++.++...|++++|..++++++
T Consensus       169 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          169 ---QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG---KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             ---CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ---CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence               123355788899999999999999999999999886541   11111222222245566889999999999999876


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ...    ..........+..+|.++...|++++|...+++++......  +..+....++..+|.++...|++++|...+
T Consensus       243 ~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  316 (373)
T 1hz4_A          243 KPE----FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL  316 (373)
T ss_dssp             CCC----CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CCC----CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            532    11112223356789999999999999999999999987653  222344457888999999999999999999


Q ss_pred             HHHHHHHHH
Q 008016          481 LEALYIREI  489 (581)
Q Consensus       481 ~~a~~~~~~  489 (581)
                      ++++.+...
T Consensus       317 ~~al~~~~~  325 (373)
T 1hz4_A          317 LDALKLANR  325 (373)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999998754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-21  Score=176.17  Aligned_cols=252  Identities=14%  Similarity=0.086  Sum_probs=213.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ....+...|..+...|++++|+.+|+++++.          . ..+.++..+|.++...|++++|+..+++++.......
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence            4456889999999999999999999999987          3 4467899999999999999999999999999886655


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      ++.+....++..+|.++...|++++|+.++++++.+.     +.           +.++...|++++|+..+++++..  
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~-----------~~~~~~~~~~~~a~~~~~~~~~~--  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-----RT-----------ADILTKLRNAEKELKKAEAEAYV--  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC-----------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ch-----------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence            5556667889999999999999999999999999862     11           45677788999999999998875  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                            .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.++++++
T Consensus       135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAI  200 (258)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                  6778899999999999999999999999999986        34456789999999999999999999999999


Q ss_pred             HHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016          357 RVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (581)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (581)
                      +.       .|+.   ..++..+|.++...|++++|+.++++++++..+..  ..|....++..++.
T Consensus       201 ~~-------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          201 EK-------DPNF---VRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             Hh-------CHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            87       2333   45678999999999999999999999999876542  33444455555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.8e-21  Score=173.48  Aligned_cols=253  Identities=12%  Similarity=0.034  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ..+..+..+|.++...|++++|+.+++++++..         ....++..+|.++...|++++|+..++++++..... .
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~   72 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R   72 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence            457789999999999999999999999999872         335788999999999999999999999999986543 2


Q ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      ++.+....++..+|.++...|++++|+.++++++.+.       +.           +.++...|++++|+..+++++..
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~-----------~~~~~~~~~~~~a~~~~~~~~~~  134 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-------RT-----------ADILTKLRNAEKELKKAEAEAYV  134 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CC-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-------ch-----------hHHHHHHhHHHHHHHHHHHHHHc
Confidence            2333447899999999999999999999999999862       22           34677788899999999998764


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (581)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (581)
                              .|....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..+++
T Consensus       135 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          135 --------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             --------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence                    5777889999999999999999999999999985        355567899999999999999999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 008016          483 ALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVS  550 (581)
Q Consensus       483 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  550 (581)
                      +++..        |....++..+|.++...|+++ +|+..+++++++.....  ..|....++..++.
T Consensus       199 al~~~--------~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~a~~~~~~~~--~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          199 AIEKD--------PNFVRAYIRKATAQIAVKEYA-SALETLDAARTKDAEVN--NGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHC--------TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHH
T ss_pred             HHHhC--------HHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhChhhc--CCCchHHHHHHHHH
Confidence            98853        344578999999999999999 99999999999875543  23444555555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=2.7e-22  Score=183.36  Aligned_cols=251  Identities=9%  Similarity=0.006  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (581)
                      ..+...|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.       ++
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~   68 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-------VN   68 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-------SC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------cC
Confidence            45678899999999999999999999875        2334457889999999999999999999999873       23


Q ss_pred             CChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 008016          368 DDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK  447 (581)
Q Consensus       368 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  447 (581)
                      ++.....++..+|.++...|++++|+.++++++...        |....++..+|.+|...|++++|+.++++++++   
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---  137 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---  137 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---
Confidence            344446678999999999999999999999999862        334468899999999999999999999999873   


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---ChHHHHHHHH
Q 008016          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---DDTKLLELLK  524 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~~A~~~~~  524 (581)
                           +|....++..+|......+++++|+..+++++++.     |   ....++..+|.++...|+   ++ +|+..++
T Consensus       138 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p---~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~  203 (272)
T 3u4t_A          138 -----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-----P---NIYIGYLWRARANAAQDPDTKQG-LAKPYYE  203 (272)
T ss_dssp             -----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T---TCHHHHHHHHHHHHHHSTTCSSC-TTHHHHH
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----c---cchHHHHHHHHHHHHcCcchhhH-HHHHHHH
Confidence                 56677889999955555669999999999998864     3   335778899999999998   88 8999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          525 RVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       525 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      +++++......+..+....++..+|.+|...|++++|+..|++++++.++....
T Consensus       204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a  257 (272)
T 3u4t_A          204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA  257 (272)
T ss_dssp             HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence            999987554322223456889999999999999999999999999998765543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.90  E-value=1e-21  Score=185.65  Aligned_cols=255  Identities=11%  Similarity=-0.056  Sum_probs=214.2

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  319 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  319 (581)
                      .|....++..+|.++...|++++|+..+++++.+        +|....+++.+|.++...|+ +++|+..|++++++   
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---  161 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  161 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH---
Confidence            4677889999999999999999999999999998        67788999999999999997 99999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                           +|....++.++|.++...|++++|+..|++++++       .|++   ..++.++|.++...|++++|+.+++++
T Consensus       162 -----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l-------dP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          162 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAKN---YHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence                 5667889999999999999999999999999997       3333   557799999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHH-ccCHHHH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC--
Q 008016          400 LLITEKYKGKEHPSFVTHLLNLAASYSR-SKNFVEA-----ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN--  471 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--  471 (581)
                      +.+        +|....+++++|.++.. .|..++|     +.++++++.+        +|....++..++.++...|  
T Consensus       227 l~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~  290 (382)
T 2h6f_A          227 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLS  290 (382)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGG
T ss_pred             HHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCcc
Confidence            987        35567799999999999 5555777     5889999985        5677789999999999988  


Q ss_pred             ChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCC---------ChHHHHHHHHHH-HHHHHHhcCCCCHHH
Q 008016          472 RDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGE---------DDTKLLELLKRV-LRIQEREFGSESEEV  541 (581)
Q Consensus       472 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~~A~~~~~~a-~~~~~~~~~~~~~~~  541 (581)
                      ++++|++.++++ +        ..|....++..+|.+|...|+         .+ +|+.+|+++ ++        .+|..
T Consensus       291 ~~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~-~A~~~~~~l~~~--------~DP~r  352 (382)
T 2h6f_A          291 KYPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN-KALELCEILAKE--------KDTIR  352 (382)
T ss_dssp             GCHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH-HHHHHHHHHHHT--------TCGGG
T ss_pred             chHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHHHHH--------hCchh
Confidence            688998877665 2        234455788999999998852         24 677676665 44        35777


Q ss_pred             HHHHHHHHHHHHHc
Q 008016          542 MLTLKKVVSYLDKL  555 (581)
Q Consensus       542 ~~~~~~la~~~~~~  555 (581)
                      ...|..++..+..+
T Consensus       353 ~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          353 KEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77888888877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.90  E-value=4.1e-22  Score=182.09  Aligned_cols=262  Identities=13%  Similarity=0.030  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      +..+...|.++...|++++|+..+++++...       |....++..+|.++...|++++|+..+++++..     +.+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~   70 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT   70 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence            3467889999999999999999999988764       222336788999999999999999999999872     1222


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      .....++..+|.++...|++++|+.+++++++.        .|....++..+|.+|...|++++|+.+++++++.     
T Consensus        71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----  137 (272)
T 3u4t_A           71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-----  137 (272)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence            334677899999999999999999999999997        4555678999999999999999999999999864     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR---GQEGRELLEE  398 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~  398 (581)
                         .|....++..+|......+++++|+..++++++.       .|+.   ...+..+|.++...|+   +++|+..+++
T Consensus       138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-------KPNI---YIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence               4566788899995555567999999999999987       2333   4566889999999999   9999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 008016          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (581)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (581)
                      +++...............++..+|.+|...|++++|+.++++++++        +|....+...++.+...
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence            9998755422112335578999999999999999999999999986        45555566666655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=8.8e-22  Score=186.02  Aligned_cols=255  Identities=11%  Similarity=-0.025  Sum_probs=216.4

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHH
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN-YEKSMLVYQRVINVLESR  236 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~  236 (581)
                      .|....++..+|.++...|++++|+..+++++.+.       |....+++.+|.++...|+ +++|+..|++++.+.   
T Consensus        93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~---  162 (382)
T 2h6f_A           93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---  162 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---
T ss_pred             ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC---
Confidence            78889999999999999999999999999998875       5666789999999999997 999999999999863   


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                           |....++.++|.++...|++++|+..|++++++        +|....++.++|.++...|++++|+.+|++++++
T Consensus       163 -----P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          163 -----PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             -----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence                 334788999999999999999999999999998        6777899999999999999999999999999987


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC--C
Q 008016          317 YTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEA-----VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG--R  388 (581)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~  388 (581)
                              +|....+++++|.++.. .|.+++|     +.++++++.+       .|++   ..++.+++.++...|  +
T Consensus       230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-------~P~~---~~a~~~l~~ll~~~g~~~  291 (382)
T 2h6f_A          230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-------VPHN---ESAWNYLKGILQDRGLSK  291 (382)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHTTTCGGG
T ss_pred             --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-------CCCC---HHHHHHHHHHHHccCccc
Confidence                    56778899999999999 5665888     5889999987       3333   457789999999988  6


Q ss_pred             hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc--------C-HHHHHHHHHHH-HHHHHHhcCCCCcchHH
Q 008016          389 GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK--------N-FVEAERLLRIC-LDIMTKTVGPDDQSISF  458 (581)
Q Consensus       389 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~  458 (581)
                      +++|++.++++ +        ..|....++..+|.+|..+|        + +++|+.+|+++ ++        .+|....
T Consensus       292 ~~~a~~~~~~~-~--------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------~DP~r~~  354 (382)
T 2h6f_A          292 YPNLLNQLLDL-Q--------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------KDTIRKE  354 (382)
T ss_dssp             CHHHHHHHHHH-T--------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------TCGGGHH
T ss_pred             hHHHHHHHHHh-c--------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------hCchhHH
Confidence            89998887664 1        23455678889999999885        2 58899999887 55        3677778


Q ss_pred             HHHHHHHHHHHc
Q 008016          459 PMLHLGITLYHL  470 (581)
Q Consensus       459 ~~~~la~~~~~~  470 (581)
                      .|..++..+..+
T Consensus       355 ~w~~~~~~l~~~  366 (382)
T 2h6f_A          355 YWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888776643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=1.3e-21  Score=171.33  Aligned_cols=197  Identities=17%  Similarity=0.119  Sum_probs=162.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..++..+|.++...|++++|+..|+++++.        .|....++..+|.++...|++++|+..++++++.        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            467889999999999999999999999986        6777889999999999999999999999999987        


Q ss_pred             CchHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016          325 DGRVGMAMCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR  393 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (581)
                      .|....++.++|.++...           |++++|+..+++++++       .|+.   ..++.++|.++...|++++|+
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-------NPRY---APLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-------Cccc---HHHHHHHHHHHHHcCChHHHH
Confidence            456678899999999999           9999999999999997       3333   456689999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 008016          394 ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (581)
Q Consensus       394 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (581)
                      ..|++++++.         ....++.++|.++...|++++|+..|++++++        +|....++..+|.++...|++
T Consensus       139 ~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          139 ASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            9999999872         23457889999999999999999999999985        566678899999999999999


Q ss_pred             HHHHHHHHHHH
Q 008016          474 KEAEKLVLEAL  484 (581)
Q Consensus       474 ~~A~~~~~~a~  484 (581)
                      ++|+..++++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.88  E-value=1.7e-21  Score=170.51  Aligned_cols=197  Identities=18%  Similarity=0.181  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      ..+++.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++++        
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------   68 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------   68 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            346789999999999999999999999874        3445778999999999999999999999999998        


Q ss_pred             ChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Q 008016          283 SADLVLPLFSLGSLFIKE-----------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (581)
                      .|....++..+|.++...           |++++|+..+++++++        +|....++.++|.++...|++++|+..
T Consensus        69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~  140 (217)
T 2pl2_A           69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS  140 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence            567788999999999999           9999999999999987        456678899999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (581)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (581)
                      |++++++.        +.   ..++.++|.++...|++++|+..|+++++.        .|....++..+|.++...|++
T Consensus       141 ~~~al~~~--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~  201 (217)
T 2pl2_A          141 LKQALALE--------DT---PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKA  201 (217)
T ss_dssp             HHHHHHHC--------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC----
T ss_pred             HHHHHhcc--------cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCH
Confidence            99999972        22   446689999999999999999999999987        345557889999999999999


Q ss_pred             HHHHHHHHHHH
Q 008016          432 VEAERLLRICL  442 (581)
Q Consensus       432 ~~A~~~~~~al  442 (581)
                      ++|+..++++-
T Consensus       202 ~~A~~~~~~~~  212 (217)
T 2pl2_A          202 EEAARAAALEH  212 (217)
T ss_dssp             -----------
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=6.7e-22  Score=193.26  Aligned_cols=351  Identities=13%  Similarity=0.033  Sum_probs=240.7

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHhhcCCC
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDL---KFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~  198 (581)
                      ...+..+.+.|++++|+.+|+++.+.            ..+.++..+|.+|...|+.   ++|+.+|+++.+.       
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------   67 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-------   67 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCTGGGTCC--------------------------------
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence            44677889999999999999998653            2345678899999999988   8999999987643       


Q ss_pred             cchHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLE-----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                         ...+++.+|.++...|     ++++|+.+|+++++.       ++   ..++..+|.+|...+..+++...++....
T Consensus        68 ---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~  134 (452)
T 3e4b_A           68 ---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQ  134 (452)
T ss_dssp             ------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence               2345788999666665     889999999999872       22   23788899999988776655444444333


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCC---CHHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANG---NAEEAVE  350 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~  350 (581)
                      ....       ....+.+.||.+|...+.++++............    ..++.   ++.+||.+|...|   ++++|+.
T Consensus       135 a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~  200 (452)
T 3e4b_A          135 WQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLK  200 (452)
T ss_dssp             HHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence            3221       2245788999999999988777766443333221    22333   7889999999999   9999999


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-H
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIV----GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS-Y  425 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~  425 (581)
                      +|+++.+.       ++..   ...++++|.+|...    +++++|+.+|+++.           +....++++||.+ +
T Consensus       201 ~~~~aa~~-------g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~  259 (452)
T 3e4b_A          201 QMEAGVSR-------GTVT---AQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLY  259 (452)
T ss_dssp             HHHHHHHT-------TCSC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHH
T ss_pred             HHHHHHHC-------CCHH---HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHH
Confidence            99999875       2222   33447889888665    78999999999875           2234578889998 4


Q ss_pred             --HHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016          426 --SRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-----RDKEAEKLVLEALYIREIAFGKDSLPV  498 (581)
Q Consensus       426 --~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (581)
                        ...+++++|+.+|+++.+.          ....++.+||.+|. .|     ++++|+.+|+++.        +.+   
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---  317 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---  317 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---
T ss_pred             hCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---
Confidence              5689999999999999862          24568889999988 55     9999999999885        233   


Q ss_pred             HHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHH
Q 008016          499 GEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSN  570 (581)
Q Consensus       499 ~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  570 (581)
                      ..+...||.+|..    ..+++ +|+.+|+++.+       .++   ..+.+.||.+|..    ..++++|..+|+++.+
T Consensus       318 ~~A~~~Lg~~y~~G~g~~~d~~-~A~~~~~~Aa~-------~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          318 VAADYYLGQIYRRGYLGKVYPQ-KALDHLLTAAR-------NGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HHHHHHHHHHHHTTTTSSCCHH-HHHHHHHHHHT-------TTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCCCcCHH-HHHHHHHHHHh-------hCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            3778999988877    23666 89999988875       122   4567889999875    4588999999999876


Q ss_pred             HH
Q 008016          571 LR  572 (581)
Q Consensus       571 l~  572 (581)
                      .+
T Consensus       387 ~g  388 (452)
T 3e4b_A          387 QD  388 (452)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.5e-19  Score=165.38  Aligned_cols=263  Identities=14%  Similarity=0.083  Sum_probs=206.3

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhhcCCCcchH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL-DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (581)
                      -.+..|+|..|+..++++.       ...|.. ......++.+|...|++++|+..++.          .+++ ...++.
T Consensus         8 ~~~~~g~y~~ai~~~~~~~-------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~-~~~a~~   69 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVK-------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAP-ELQAVR   69 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSC-------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcc-------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCCh-hHHHHH
Confidence            3567899999999887642       222443 34667789999999999999976643          1333 567888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      .++..+...|++++|++.+++.+..      ..+|....++..+|.++...|++++|+..+++             +...
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~  130 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSL  130 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCH
Confidence            9999999999999999999988763      12466678899999999999999999999886             2345


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      .++..+|.++...|++++|+..++++++.       .|+.... .....+..++...|++++|+..|++++..       
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~-~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-------  195 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQ-------DEDATLT-QLATAWVSLAAGGEKLQDAYYIFQEMADK-------  195 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHH-HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------CcCcHHH-HHHHHHHHHHhCchHHHHHHHHHHHHHHh-------
Confidence            67889999999999999999999999886       3443211 11111223344558999999999999876       


Q ss_pred             CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-AEKLVLEALYIRE  488 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~~  488 (581)
                       .|....+++++|.++...|++++|+..+++++..        +|....++.++|.++...|++.+ +..++++++++. 
T Consensus       196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-  265 (291)
T 3mkr_A          196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-  265 (291)
T ss_dssp             -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-
T ss_pred             -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence             2345668999999999999999999999999985        56677789999999999999986 578899998764 


Q ss_pred             HHcCCCChhHH
Q 008016          489 IAFGKDSLPVG  499 (581)
Q Consensus       489 ~~~~~~~~~~~  499 (581)
                          |++|...
T Consensus       266 ----P~~~~~~  272 (291)
T 3mkr_A          266 ----RSHPFIK  272 (291)
T ss_dssp             ----TTCHHHH
T ss_pred             ----CCChHHH
Confidence                7777543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.87  E-value=1.5e-19  Score=165.39  Aligned_cols=257  Identities=13%  Similarity=0.063  Sum_probs=200.8

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEE-VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      ++..+..|+|.+|+..+++...          .+|+. ......++.+|...|+++.|+..++.         .+ +...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~----------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---------~~-~~~~   65 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP----------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---------SS-APEL   65 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC----------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------TS-CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccc----------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------cC-ChhH
Confidence            5667889999999998877532          25555 45778889999999999999875543         12 3355


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .++..++..+...|++++|+..+++++..      ...|....++..+|.++...|++++|+..+++             
T Consensus        66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------  126 (291)
T 3mkr_A           66 QAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------  126 (291)
T ss_dssp             HHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------
Confidence            67888999999999999999999988752      11233466789999999999999999999876             


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      |....++..+|.++..+|++++|+..++++++..     +++. .......+..++...|++++|+..|+++++.     
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----  195 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-----EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----  195 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----
Confidence            2346688899999999999999999999998861     2221 1111111223444569999999999999986     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHH-HHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVE-AERLLRICL  442 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al  442 (581)
                        .|+.   ..+++++|.++...|++++|+..+++++..        .|....++.++|.++...|++++ +..++++++
T Consensus       196 --~p~~---~~~~~~la~~~~~~g~~~eA~~~l~~al~~--------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~  262 (291)
T 3mkr_A          196 --CSPT---LLLLNGQAACHMAQGRWEAAEGVLQEALDK--------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK  262 (291)
T ss_dssp             --SCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             --CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence              2333   456789999999999999999999999987        34556679999999999999976 578999998


Q ss_pred             HH
Q 008016          443 DI  444 (581)
Q Consensus       443 ~~  444 (581)
                      ++
T Consensus       263 ~~  264 (291)
T 3mkr_A          263 DA  264 (291)
T ss_dssp             HH
T ss_pred             Hh
Confidence            85

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=3.2e-18  Score=171.89  Aligned_cols=384  Identities=12%  Similarity=0.046  Sum_probs=266.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +...+. +.+.|++++|...|+++++.          .|.....+..++..+...|++++|..+|++++...       |
T Consensus        16 w~~l~~-~~~~~~~~~a~~~~e~al~~----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-------p   77 (530)
T 2ooe_A           16 WSILIR-EAQNQPIDKARKTYERLVAQ----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-------L   77 (530)
T ss_dssp             HHHHHH-HHHSSCHHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-------C
T ss_pred             HHHHHH-HHHhCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------C
Confidence            444554 36789999999999999976          78888999999999999999999999999987654       3


Q ss_pred             hHHHHHHHHHH-HHHhccCHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh---------cCCHHHHHH
Q 008016          201 LLDAILLHMGS-MYSTLENYEKSML----VYQRVINVLESRYGKTSILLVTSLLGMAKVLGS---------IGRAKKAVE  266 (581)
Q Consensus       201 ~~~~~~~~l~~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~~~A~~  266 (581)
                      . ...|...+. .....|++++|..    .|++++..    .+. ++....+|...+.....         .|++++|..
T Consensus        78 ~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~  151 (530)
T 2ooe_A           78 H-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR  151 (530)
T ss_dssp             C-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred             C-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence            2 234555554 4456788888876    55555543    221 22224455555655544         688899999


Q ss_pred             HHHHHHHHHHH-----------------------------------------------hcCC----CCh-------hhHH
Q 008016          267 IYHRVITILEL-----------------------------------------------NRGT----ESA-------DLVL  288 (581)
Q Consensus       267 ~~~~al~~~~~-----------------------------------------------~~~~----~~~-------~~~~  288 (581)
                      +|+++++.-..                                               .+..    -.|       ....
T Consensus       152 ~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~  231 (530)
T 2ooe_A          152 VYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD  231 (530)
T ss_dssp             HHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred             HHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence            99888752000                                               0000    000       0001


Q ss_pred             HHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-------CCCHH-------
Q 008016          289 PLFSLGSLFIK----EGKA----VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-------NGNAE-------  346 (581)
Q Consensus       289 ~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~-------  346 (581)
                      .+.........    .++.    ..+...|++++..        .|....+|..+|..+..       .|+++       
T Consensus       232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~  303 (530)
T 2ooe_A          232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD  303 (530)
T ss_dssp             HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence            11111111000    0111    2455566666654        23446778888888876       79987       


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016          347 EAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (581)
Q Consensus       347 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (581)
                      +|...++++++.      ..|+.   ..++..++.++...|++++|...|++++.+     .+..+  ..++..++.++.
T Consensus       304 ~A~~~~~~Al~~------~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~  367 (530)
T 2ooe_A          304 EAANIYERAIST------LLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFAR  367 (530)
T ss_dssp             HHHHHHHHHTTT------TCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------hCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHH
Confidence            788888888752      12333   456788999999999999999999999875     22222  247888999999


Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGIT-LYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCL  505 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  505 (581)
                      ..|++++|+..|+++++.        .|.....+...+.+ +...|++++|...|+++++..     |+++   ..+..+
T Consensus       368 ~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~---~~~~~~  431 (530)
T 2ooe_A          368 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIP---EYVLAY  431 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCH---HHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCH---HHHHHH
Confidence            999999999999999873        23333344444444 346899999999999999875     4444   678899


Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          506 VSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE-VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       506 a~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      +.++...|+.+ +|..+|++++..     .+.+|. ....+...+......|+.+.+..+++++++..++
T Consensus       432 ~~~~~~~g~~~-~Ar~~~~~al~~-----~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          432 IDYLSHLNEDN-NTRVLFERVLTS-----GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHTTTTCHH-HHHHHHHHHHHS-----CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHhCCCHh-hHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            99999999999 999999999873     223342 3446767788888899999999999999999875

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=1.2e-18  Score=159.06  Aligned_cols=230  Identities=13%  Similarity=0.050  Sum_probs=196.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVI  359 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  359 (581)
                      |..+.++..+|.++...|++++|+.+|+++++.          ....++..+|.+|..    .+++++|+.+|+++++. 
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-   71 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   71 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence            345678899999999999999999999999871          224678899999999    99999999999999875 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNF  431 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~  431 (581)
                            +  .   ..++.++|.+|..    .+++++|+.++++++..       +   ...++..+|.+|..    .+++
T Consensus        72 ------~--~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           72 ------N--Y---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             ------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             ------C--C---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCH
Confidence                  1  1   4567899999999    99999999999999874       1   24678999999999    9999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHH
Q 008016          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVS  507 (581)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  507 (581)
                      ++|+.+|+++++.       .   ...++..+|.++..    .+++++|+.+|+++++.       ++   ..++..+|.
T Consensus       131 ~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~  190 (273)
T 1ouv_A          131 KKAVEYFTKACDL-------N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGN  190 (273)
T ss_dssp             HHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-------C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHH
Confidence            9999999999883       1   24578899999999    99999999999999863       22   367899999


Q ss_pred             HHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHHHHh
Q 008016          508 IQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       508 ~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ++..    .++++ +|+.+++++++.       ++   ..++..+|.+|..    .|++++|+.+|++++++.+...
T Consensus       191 ~~~~g~~~~~~~~-~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          191 MYHHGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHcCCCCCccHH-HHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            9999    99999 999999999873       22   4678899999999    9999999999999999876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=1.2e-18  Score=158.91  Aligned_cols=224  Identities=15%  Similarity=0.176  Sum_probs=193.3

Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~  276 (581)
                      ....+++.+|.++...|++++|+.+|+++++       +++   ..++..+|.+|..    .+++++|+.+|+++++.  
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--   71 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD-------LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--   71 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence            3445788999999999999999999999987       122   4678999999999    99999999999999875  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEA  348 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  348 (581)
                           +   ...++..+|.+|..    .+++++|+.+|+++++.          ....++.++|.+|..    .+++++|
T Consensus        72 -----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~~~~~A  133 (273)
T 1ouv_A           72 -----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTRDFKKA  133 (273)
T ss_dssp             -----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             -----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCcccCHHHH
Confidence                 1   36788999999999    99999999999999874          235788999999999    9999999


Q ss_pred             HHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016          349 VELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (581)
Q Consensus       349 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (581)
                      +.+++++++.       +  +   ..++.++|.+|..    .+++++|+.+++++++.       .+   ..++..+|.+
T Consensus       134 ~~~~~~a~~~-------~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~  191 (273)
T 1ouv_A          134 VEYFTKACDL-------N--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNM  191 (273)
T ss_dssp             HHHHHHHHHT-------T--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred             HHHHHHHHhc-------C--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHH
Confidence            9999999874       1  1   3456889999999    99999999999999864       12   3578899999


Q ss_pred             HHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 008016          425 YSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYI  486 (581)
Q Consensus       425 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  486 (581)
                      |..    .+++++|+.+++++++.       . +  ..++..+|.+|..    .+++++|+.+|+++++.
T Consensus       192 ~~~g~~~~~~~~~A~~~~~~a~~~-------~-~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          192 YHHGEGATKNFKEALARYSKACEL-------E-N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHTCSSCCCHHHHHHHHHHHHHT-------T-C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHhC-------C-C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence            999    99999999999999883       1 2  4678999999999    99999999999999885

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=8.3e-19  Score=161.20  Aligned_cols=225  Identities=12%  Similarity=0.082  Sum_probs=173.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      +...|.+|...|++++|+..|++++.+....  .+.+..+.++.++|.+|...|++++|+.+|++++++....  ++...
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~  115 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRR  115 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHH
Confidence            3444777889999999999999999998764  3445668899999999999999999999999999997663  23445


Q ss_pred             hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          286 LVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       286 ~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      .+.++.++|.+|... |++++|+.+|++++++.+..  .+......++.++|.++...|++++|+.+|++++++...   
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---  190 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG---  190 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS---
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc---
Confidence            577899999999996 99999999999999987653  222334678999999999999999999999999987322   


Q ss_pred             CCCCC-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH--HccCHHHHHHHHHHH
Q 008016          365 MSLDD-SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS--RSKNFVEAERLLRIC  441 (581)
Q Consensus       365 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a  441 (581)
                       .+.. ......+.++|.++...|++++|+.++++++.+.....   .......+..++..+.  ..+++++|+..|+++
T Consensus       191 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~  266 (292)
T 1qqe_A          191 -NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (292)
T ss_dssp             -CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             -CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence             1111 12344678999999999999999999999987653321   1112234556666664  456788888888776


Q ss_pred             HH
Q 008016          442 LD  443 (581)
Q Consensus       442 l~  443 (581)
                      +.
T Consensus       267 ~~  268 (292)
T 1qqe_A          267 MR  268 (292)
T ss_dssp             SC
T ss_pred             Cc
Confidence            54

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.83  E-value=2.2e-18  Score=159.58  Aligned_cols=248  Identities=10%  Similarity=0.052  Sum_probs=194.6

Q ss_pred             hccCHHHHHHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 008016          215 TLENYEKSMLVYQRVINVLES-RY--GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLF  291 (581)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  291 (581)
                      ..|++++|..+++++.+.... .+  +++.......+...|.+|...|++++|+..|.+++++....  .+......++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            467888899998888876543 12  23444566677778899999999999999999999998764  34456678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChH
Q 008016          292 SLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI  371 (581)
Q Consensus       292 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  371 (581)
                      ++|.+|...|++++|+.+|++++++....  .+....+.++.++|.+|.. |++++|+.+|++++++.+..    .+...
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~----~~~~~  153 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE----ERLRQ  153 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT----TCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC----CChhH
Confidence            99999999999999999999999998654  3334567889999999999 99999999999999998762    33445


Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP  451 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  451 (581)
                      ...++.++|.+|..+|++++|+.+|++++.+....  ...+.....+..+|.++...|++++|+.+|++++ +....   
T Consensus       154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            56788999999999999999999999999998765  2234455688899999999999999999999998 42111   


Q ss_pred             CCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016          452 DDQSISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                      ........+..++..+ ..|+.+.+..
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1122233455666655 5677665544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=2.2e-18  Score=158.42  Aligned_cols=222  Identities=13%  Similarity=0.030  Sum_probs=170.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      |.+|...|++++|+..|++++++....  .+.+..+.++.++|.+|...|++++|+.+|++++++....  ++....+.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~  119 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQFRRGANF  119 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHH
Confidence            556788999999999999999998764  3445668899999999999999999999999999998764  334446788


Q ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          332 MCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       332 ~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      +.++|.+|... |++++|+.+|++++++.+..    .+......++.++|.++..+|++++|+.+|++++.+.... +..
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~  194 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD----QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN-RLS  194 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC-TTT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-Ccc
Confidence            99999999996 99999999999999997752    2334446678999999999999999999999999874221 000


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY--HLNRDKEAEKLVLEALY  485 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~  485 (581)
                      .......+.++|.++...|++++|+..|++++++.....   .......+..++..+.  ..+++++|+..|++++.
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            113445788999999999999999999999987532211   1112234556666665  45678888888776643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=7.6e-19  Score=160.62  Aligned_cols=256  Identities=11%  Similarity=0.043  Sum_probs=197.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (581)
                      .....|++++|+..+++++...   ..++|....++..+|.++...|++++|+..|++++...     ++   ...++..
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~---~~~~~~~   82 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASR---ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PD---MPEVFNY   82 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC---CHHHHHH
T ss_pred             ccCccchHHHHHHHHHHHHhcc---cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CC---cHHHHHH
Confidence            3445688999999999987753   23456788899999999999999999999999999862     22   3567899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      +|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++..     ++++   .
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~---~  146 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDP---F  146 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---H
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCh---H
Confidence            999999999999999999999997        44556889999999999999999999999999862     2222   2


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      ....++ ++...|++++|+..+++++...       ++....    ..++.++...++.++|+..+++++......    
T Consensus       147 ~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----  210 (275)
T 1xnf_A          147 RSLWLY-LAEQKLDEKQAKEVLKQHFEKS-------DKEQWG----WNIVEFYLGNISEQTLMERLKADATDNTSL----  210 (275)
T ss_dssp             HHHHHH-HHHHHHCHHHHHHHHHHHHHHS-------CCCSTH----HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----
T ss_pred             HHHHHH-HHHHhcCHHHHHHHHHHHHhcC-------CcchHH----HHHHHHHHHhcCHHHHHHHHHHHhcccccc----
Confidence            222233 3466699999999999988862       222221    347778888899999999999887654332    


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      .+....++..+|.++...|++++|+.++++++.+        .|...   ...+.++...|++++|++.+
T Consensus       211 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--------NVHNF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CCTTC---HHHHHHHHHHHHHHHC----
T ss_pred             cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------CchhH---HHHHHHHHHHHHHHhhHHHH
Confidence            2344678999999999999999999999999874        23222   23366788889999988776

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.83  E-value=2e-17  Score=166.07  Aligned_cols=350  Identities=10%  Similarity=0.040  Sum_probs=242.7

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      +|....++..++.. ...|++++|...|++++...       |....+|..++..+...|++++|...|++++...    
T Consensus         9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~----   76 (530)
T 2ooe_A            9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV----   76 (530)
T ss_dssp             CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC----
T ss_pred             CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Confidence            77788888888884 77899999999999987764       5566778999999999999999999999998752    


Q ss_pred             CCCCHHHHHHHHHHHH-HHHhcCCHHHHHH----HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---------cCCH
Q 008016          238 GKTSILLVTSLLGMAK-VLGSIGRAKKAVE----IYHRVITILELNRGTESADLVLPLFSLGSLFIK---------EGKA  303 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~---------~g~~  303 (581)
                       + +   ...|..++. .....|++++|.+    .|++++...    + .++.....+...+.....         .|++
T Consensus        77 -p-~---~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~----g-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  146 (530)
T 2ooe_A           77 -L-H---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI----G-MEIMSYQIWVDYINFLKGVEAVGSYAENQRI  146 (530)
T ss_dssp             -C-C---HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT----T-TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred             -C-C---hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC----C-CCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence             2 2   335666664 4445688887776    566665542    2 233345566666665554         6788


Q ss_pred             HHHHHHHHHHHHHH--------H---------------------------------------HHcCC----CCch-----
Q 008016          304 VDAESVFSRILKIY--------T---------------------------------------KVYGE----NDGR-----  327 (581)
Q Consensus       304 ~~A~~~~~~al~~~--------~---------------------------------------~~~~~----~~~~-----  327 (581)
                      ++|..+|++++..-        .                                       ..+..    -.|.     
T Consensus       147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~  226 (530)
T 2ooe_A          147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE  226 (530)
T ss_dssp             HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred             HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence            88888888877520        0                                       00000    0000     


Q ss_pred             --HHHHHHHHHHHHHHC----CCH----HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH-------cCChH
Q 008016          328 --VGMAMCSLAHAKCAN----GNA----EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI-------VGRGQ  390 (581)
Q Consensus       328 --~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~  390 (581)
                        ....+..........    ++.    .+++..|++++...       |..   ..++..+|..+..       .|+++
T Consensus       227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-------p~~---~~~w~~~~~~~~~~~~~~~~~g~~~  296 (530)
T 2ooe_A          227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-------GHH---PDIWYEAAQYLEQSSKLLAEKGDMN  296 (530)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhchhhhhccchh
Confidence              011111111111110    111    25556666666652       222   4567888888876       79988


Q ss_pred             -------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch-HHHHHH
Q 008016          391 -------EGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI-SFPMLH  462 (581)
Q Consensus       391 -------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~  462 (581)
                             +|+..+++++..       ..|.....+..+|.++...|++++|...|++++++        .|.. ..++..
T Consensus       297 ~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~  361 (530)
T 2ooe_A          297 NAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQ  361 (530)
T ss_dssp             HHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------SSSCHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--------cccCchHHHHH
Confidence                   777777777641       13555678899999999999999999999999984        2322 357889


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 008016          463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI-QTRLGEDDTKLLELLKRVLRIQEREFGSESEEV  541 (581)
Q Consensus       463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~  541 (581)
                      ++.++...|++++|...|+++++..     +..   ...+...+.+ +...|+.+ +|...|+++++..        |+.
T Consensus       362 ~~~~~~~~~~~~~A~~~~~~Al~~~-----~~~---~~~~~~~a~~~~~~~~~~~-~A~~~~e~al~~~--------p~~  424 (530)
T 2ooe_A          362 YMKFARRAEGIKSGRMIFKKAREDA-----RTR---HHVYVTAALMEYYCSKDKS-VAFKIFELGLKKY--------GDI  424 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCT-----TCC---THHHHHHHHHHHHHTCCHH-HHHHHHHHHHHHH--------TTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcc-----CCc---hHHHHHHHHHHHHHcCChh-HHHHHHHHHHHHC--------CCC
Confidence            9999999999999999999998632     222   2333444444 34689998 9999999999864        334


Q ss_pred             HHHHHHHHHHHHHcCChhhhHHHHHHHHHH
Q 008016          542 MLTLKKVVSYLDKLGRKEEKFPLKKRLSNL  571 (581)
Q Consensus       542 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~l  571 (581)
                      ..++..++.++...|+.++|..+|++++..
T Consensus       425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            567889999999999999999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=5.6e-19  Score=158.19  Aligned_cols=219  Identities=15%  Similarity=0.201  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      .+..++.+|..+...|++++|+.++++++..        .|....++..+|.++...|++++|+..++++++.       
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-------   86 (243)
T ss_dssp             --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence            4556888999999999999999999999873        2333678899999999999999999999999987       


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                       .|....++..+|.++...|++++|+.+++++++.        .+....++..+|.++...|++++|+.+++++++..  
T Consensus        87 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--  155 (243)
T 2q7f_A           87 -DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--  155 (243)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--
T ss_pred             -CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence             4556788999999999999999999999999986        23345678899999999999999999999999872  


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                           ++.   ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++
T Consensus       156 -----~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  219 (243)
T 2q7f_A          156 -----END---TEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKA  219 (243)
T ss_dssp             -----TTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred             -----Ccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                 222   3466889999999999999999999998762        334567899999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHc
Q 008016          442 LDIMTKTVGPDDQSISFPMLHLGITLYHL  470 (581)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~  470 (581)
                      +++        .|+...++..++.+....
T Consensus       220 ~~~--------~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          220 IDI--------QPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHH--------CTTCHHHHHHHTC-----
T ss_pred             Hcc--------CcchHHHHHHHHHHHhhc
Confidence            985        344555666655544433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.82  E-value=5.8e-19  Score=158.12  Aligned_cols=217  Identities=14%  Similarity=0.169  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ..+..+..+|..+...|++++|+.+++++++.        .|....++..+|.++...|++++|+..++++++.      
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------   86 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------   86 (243)
T ss_dssp             ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence            35677889999999999999999999999875        4556788999999999999999999999999986      


Q ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                        .|....++..+|.++...|++++|+.+++++++..       +..   ..++..+|.++...|++++|+.++++++..
T Consensus        87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-------MEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence              34456788999999999999999999999999872       333   345688999999999999999999999876


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLE  482 (581)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  482 (581)
                      .        |....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|..++++
T Consensus       155 ~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          155 N--------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             C--------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             C--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            2        333457889999999999999999999999885        345567889999999999999999999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHH
Q 008016          483 ALYIREIAFGKDSLPVGEALDCLVSIQ  509 (581)
Q Consensus       483 a~~~~~~~~~~~~~~~~~~~~~la~~~  509 (581)
                      ++++.     |+++   .++..++.+.
T Consensus       219 ~~~~~-----p~~~---~~~~~~~~l~  237 (243)
T 2q7f_A          219 AIDIQ-----PDHM---LALHAKKLLG  237 (243)
T ss_dssp             HHHHC-----TTCH---HHHHHHTC--
T ss_pred             HHccC-----cchH---HHHHHHHHHH
Confidence            98854     4444   4444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.82  E-value=6.6e-18  Score=156.39  Aligned_cols=247  Identities=10%  Similarity=0.067  Sum_probs=192.4

Q ss_pred             HcCChHHHHHHHHHHHHHHhh--c--CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008016          174 YIGDLKFVQSLLDMMSGIVDS--L--KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLL  249 (581)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  249 (581)
                      ..|++++|..+++++.+....  +  ..+.......+...|.+|...|++++|+..|.+++.+....  .+....+.++.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence            356778888888887776542  1  23334445566777899999999999999999999998765  34456788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      ++|.+|...|++++|+.+|++++++....  .+......++.++|.+|.. |++++|+.+|++++++.+..  .+.....
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~  155 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA  155 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence            99999999999999999999999997653  2334567889999999999 99999999999999998763  2334467


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      .++.++|.+|...|++++|+.+|++++.+..+.    +........+.++|.++...|++++|+.++++++ +....   
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~---  227 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM----ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF---  227 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC---
Confidence            889999999999999999999999999998763    2344455577889999999999999999999998 53221   


Q ss_pred             CChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          410 EHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                      ........+..++..+ ..|+.+....
T Consensus       228 ~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          228 SGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            1223344556666655 5677655544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=7.1e-18  Score=151.90  Aligned_cols=204  Identities=12%  Similarity=0.053  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      ...++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|...++++++.       
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Confidence            4888999999999999999999999999987        4555788999999999999999999999999986       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                       .|....++..+|.++...|++++|+.++++++..        +..+....++..+|.++...|++++|+.++++++...
T Consensus       101 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  171 (252)
T 2ho1_A          101 -DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD--------TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN  171 (252)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTC--------TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhC--------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence             2344678899999999999999999999998761        1233345677899999999999999999999998762


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                              |....++..+|.++...|++++|+.+++++++.        .|.....+..++.++...|++++|..+++++
T Consensus       172 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          172 --------RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             --------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                    333567889999999999999999999998773        4555677889999999999999999999999


Q ss_pred             HHHH
Q 008016          484 LYIR  487 (581)
Q Consensus       484 ~~~~  487 (581)
                      ++..
T Consensus       236 ~~~~  239 (252)
T 2ho1_A          236 KRLY  239 (252)
T ss_dssp             HHHC
T ss_pred             HHHC
Confidence            8754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.82  E-value=9.7e-19  Score=172.04  Aligned_cols=217  Identities=12%  Similarity=0.100  Sum_probs=180.5

Q ss_pred             HHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHH
Q 008016          185 LDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENY-EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKK  263 (581)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  263 (581)
                      +++++...+......+....+++.+|.++...|++ ++|+.+|++++++.        |....++..+|.+|...|++++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~  155 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------PELVEAWNQLGEVYWKKGDVTS  155 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHH
Confidence            33333333333344566677899999999999999 99999999999862        3346789999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 008016          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE---------GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  334 (581)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  334 (581)
                      |+.+|++++++        .|. ..++..+|.++...         |++++|+..|++++++        .|....++.+
T Consensus       156 A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  218 (474)
T 4abn_A          156 AHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYI  218 (474)
T ss_dssp             HHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            99999999987        344 58899999999999         9999999999999987        4556788999


Q ss_pred             HHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016          335 LAHAKCAN--------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       335 la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (581)
                      +|.+|...        |++++|+..|++++++.       |..+....++.++|.+|...|++++|+..|++++.+    
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----  287 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL----  287 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence            99999999        99999999999999972       211134667899999999999999999999999987    


Q ss_pred             cCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          407 KGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       407 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                          .|....++..++.++...|++++|+..+.+.
T Consensus       288 ----~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          288 ----DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             ----CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                2445578899999999999999998866543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.82  E-value=1.2e-18  Score=159.23  Aligned_cols=258  Identities=14%  Similarity=0.027  Sum_probs=197.4

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 008016          210 GSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLP  289 (581)
Q Consensus       210 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  289 (581)
                      +......|++++|+..++++++..    ..+++....++..+|.++...|++++|+..++++++.        .|....+
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~   79 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEV   79 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHH
T ss_pred             eeccCccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHH
Confidence            334456689999999999998741    1234677899999999999999999999999999997        4556788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (581)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (581)
                      +..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.       .|+.
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~  144 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPND  144 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCC
Confidence            999999999999999999999999986        3344578899999999999999999999999986       3344


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (581)
                      ...    .....++...|++++|+..+++++...     +...    ....++.++...++.++|+..+++++...... 
T Consensus       145 ~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-  210 (275)
T 1xnf_A          145 PFR----SLWLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQ----WGWNIVEFYLGNISEQTLMERLKADATDNTSL-  210 (275)
T ss_dssp             HHH----HHHHHHHHHHHCHHHHHHHHHHHHHHS-----CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH-
T ss_pred             hHH----HHHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc-
Confidence            322    122234467799999999999988753     2222    12347778888999999999999887643221 


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELL  523 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~  523 (581)
                         .+....++..+|.++...|++++|..++++++.+.     |++.      ...+.++...|+++ +|++.+
T Consensus       211 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~------~~~~~~~~~l~~~~-~a~~~~  269 (275)
T 1xnf_A          211 ---AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----VHNF------VEHRYALLELSLLG-QDQDDL  269 (275)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CTTC------HHHHHHHHHHHHHH-HC----
T ss_pred             ---cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----chhH------HHHHHHHHHHHHHH-hhHHHH
Confidence               23346788999999999999999999999998743     3332      23356666777777 776665

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=1.2e-17  Score=147.38  Aligned_cols=212  Identities=11%  Similarity=-0.004  Sum_probs=177.9

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      .|....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..+++++++.    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            4566788999999999999999999999999987        4455778999999999999999999999999986    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCAN-GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                          .|....++..+|.++... |++++|+.+++++++.        +..+....++..+|.++...|++++|+.+++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD--------PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS--------TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                344467889999999999 9999999999999871        223333557789999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHHHHcCChHHHHH
Q 008016          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ-SISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                      +...        |....++..+|.++...|++++|+.++++++..        .| .....+..++.++...|++++|..
T Consensus       140 ~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          140 LAAQ--------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR--------VEVLQADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             HHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence            8762        333567889999999999999999999999885        23 444567788889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCChh
Q 008016          479 LVLEALYIREIAFGKDSLP  497 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~~  497 (581)
                      +++.+....     |+++.
T Consensus       204 ~~~~~~~~~-----p~~~~  217 (225)
T 2vq2_A          204 YEAQLQANF-----PYSEE  217 (225)
T ss_dssp             HHHHHHHHC-----TTCHH
T ss_pred             HHHHHHHhC-----CCCHH
Confidence            999887643     55553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.81  E-value=1.7e-18  Score=170.35  Aligned_cols=220  Identities=15%  Similarity=0.118  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Q 008016          223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA-KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG  301 (581)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  301 (581)
                      ...+++++........ ..+..+.++..+|.++...|++ ++|+.+|+++++.        .|....++..+|.+|...|
T Consensus        81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g  151 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKG  151 (474)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcC
Confidence            3334444444433322 2334578899999999999999 9999999999998        5667889999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHhhccCCCCChHH
Q 008016          302 KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN---------GNAEEAVELYKKALRVIKDSNYMSLDDSIM  372 (581)
Q Consensus       302 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  372 (581)
                      ++++|+.+|++++++        .|. ..++.++|.++...         |++++|+..+++++++       .|+.   
T Consensus       152 ~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~---  212 (474)
T 4abn_A          152 DVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-------DVLD---  212 (474)
T ss_dssp             CHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-------CTTC---
T ss_pred             CHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-------CCCC---
Confidence            999999999999975        344 48899999999999         9999999999999997       2333   


Q ss_pred             HHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          373 ENMRIDLAELLHIV--------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       373 ~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                      ..++.++|.+|...        |++++|+..|++++.+.     +..+....++.++|.+|...|++++|+..|++++++
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45678999999999        99999999999999872     111266789999999999999999999999999986


Q ss_pred             HHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          445 MTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                              .|....++..++.++...|++++|++.+.+.
T Consensus       288 --------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          288 --------DPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             --------CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                    4666778999999999999999998876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.81  E-value=1.2e-18  Score=170.29  Aligned_cols=354  Identities=11%  Similarity=0.005  Sum_probs=234.8

Q ss_pred             HHHHHHHHHHcCCh---hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHH
Q 008016          121 LFNEVKSMIMMGNK---NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG-----DLKFVQSLLDMMSGIV  192 (581)
Q Consensus       121 l~~~~~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~  192 (581)
                      ++.++..+...|++   ++|+.+|+++++.             .+.+++.+|.++...|     ++++|+.+|+++... 
T Consensus        38 ~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-------------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-  103 (452)
T 3e4b_A           38 QVGLADIQVGTRDPAQIKQAEATYRAAADT-------------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-  103 (452)
T ss_dssp             GGTCC-----------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-
Confidence            44455566667777   9999999998742             4567889999776665     788999999998763 


Q ss_pred             hhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008016          193 DSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVI  272 (581)
Q Consensus       193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  272 (581)
                           +++.   +++.+|.+|...+...++...++........       ....+...+|.+|...+.++++........
T Consensus       104 -----g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~  168 (452)
T 3e4b_A          104 -----GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERIC  168 (452)
T ss_dssp             -----TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred             -----CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence                 2222   5788999999887766554444443333221       124678899999999998877776644443


Q ss_pred             HHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC----CCH
Q 008016          273 TILELNRGTESADLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----GNA  345 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~  345 (581)
                      ....    ..+|.   +++.||.+|...|   ++++|+.+|+++.+.        .+..+..+.++|.+|...    +++
T Consensus       169 ~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          169 KAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             HHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             HHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCH
Confidence            3321    12333   8899999999999   999999999999874        234455668899999765    799


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 008016          346 EEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL-L--HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLA  422 (581)
Q Consensus       346 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  422 (581)
                      ++|+.+|+++.   ..       +   ..+++++|.+ +  ...+++++|+.+|+++.+.          ....++++||
T Consensus       234 ~~A~~~~~~aa---~g-------~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg  290 (452)
T 3e4b_A          234 KTAQALLEKIA---PG-------Y---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------DQPRAELLLG  290 (452)
T ss_dssp             HHHHHHHHHHG---GG-------S---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------TCHHHHHHHH
T ss_pred             HHHHHHHHHHc---CC-------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHH
Confidence            99999999986   21       1   3456889998 4  4689999999999998753          1345888999


Q ss_pred             HHHHHcc-----CHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCC
Q 008016          423 ASYSRSK-----NFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGK  493 (581)
Q Consensus       423 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~  493 (581)
                      .+|. .|     ++++|+.+|+++.           +....++++||.+|..    ..++++|..+|+++.+       .
T Consensus       291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------~  351 (452)
T 3e4b_A          291 KLYY-EGKWVPADAKAAEAHFEKAV-----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-------N  351 (452)
T ss_dssp             HHHH-HCSSSCCCHHHHHHHHHTTT-----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-------T
T ss_pred             HHHH-cCCCCCCCHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-------h
Confidence            9998 56     9999999999885           2334688999998887    4499999999999876       2


Q ss_pred             CChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--cCChhhhHHHHHH
Q 008016          494 DSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK--LGRKEEKFPLKKR  567 (581)
Q Consensus       494 ~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~  567 (581)
                      .++   .+...||.+|..    ..+.. +|..+|+++.+       .+++.   +...++.+...  .++..+|....++
T Consensus       352 g~~---~A~~~Lg~~y~~G~g~~~d~~-~A~~~~~~A~~-------~g~~~---a~~~l~~l~~~~~~~~~~~a~~~~~~  417 (452)
T 3e4b_A          352 GQN---SADFAIAQLFSQGKGTKPDPL-NAYVFSQLAKA-------QDTPE---ANDLATQLEAPLTPAQRAEGQRLVQQ  417 (452)
T ss_dssp             TCT---THHHHHHHHHHSCTTBCCCHH-HHHHHHHHHHT-------TCCHH---HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ChH---HHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHH-------CCCHH---HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            333   568899999975    34566 89999988876       23443   33344444322  3455667776666


Q ss_pred             HHHHHHH
Q 008016          568 LSNLRMK  574 (581)
Q Consensus       568 a~~l~~~  574 (581)
                      .......
T Consensus       418 ~~~~~~~  424 (452)
T 3e4b_A          418 ELAARGT  424 (452)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccc
Confidence            6555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=5.8e-18  Score=144.22  Aligned_cols=168  Identities=15%  Similarity=0.149  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      ...++.++|.+|..+|++++|+..|++++++        +|....++..+|.+|...|++++|+..+.+++..       
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------   68 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------   68 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            4678999999999999999999999999987        4566788999999999999999999999999886       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      .++.   ..++..+|.++...++++.|...+.+++..        .|....++..+|.++...|++++|+..|++++++ 
T Consensus        69 ~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-  136 (184)
T 3vtx_A           69 DTTS---AEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-  136 (184)
T ss_dssp             CCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             Cchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-
Confidence            2333   345678999999999999999999999876        2444567889999999999999999999999985 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                             +|....++..+|.+|..+|++++|+..|++++++.
T Consensus       137 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          137 -------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                   56777899999999999999999999999999853

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=1.7e-17  Score=149.39  Aligned_cols=203  Identities=11%  Similarity=0.042  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcC
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ....+...|..+...|++++|+..|+++++.          .|....++..+|.++...|++++|+..++++....    
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----  101 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD----  101 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----
Confidence            3566889999999999999999999999987          66678899999999999999999999999988764    


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                         |....++..+|.++...|++++|+.++++++.      .+..+....++..+|.++...|++++|+.+++++++.  
T Consensus       102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  170 (252)
T 2ho1_A          102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--  170 (252)
T ss_dssp             ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence               33356788999999999999999999999876      1234556788999999999999999999999999987  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                            .|....++..+|.++...|++++|..+++++++.        .|.....+..++.++...|++++|..++++++
T Consensus       171 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~  236 (252)
T 2ho1_A          171 ------NRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLK  236 (252)
T ss_dssp             ------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                  3445778899999999999999999999998764        34455678899999999999999999999998


Q ss_pred             HH
Q 008016          357 RV  358 (581)
Q Consensus       357 ~~  358 (581)
                      +.
T Consensus       237 ~~  238 (252)
T 2ho1_A          237 RL  238 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            86

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=6.8e-18  Score=143.82  Aligned_cols=166  Identities=17%  Similarity=0.269  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..++.++|.+|...|++++|+..|++++++        +|....++..+|.+|...|++++|+..+.+++..        
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------   68 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--------   68 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence            678999999999999999999999999998        6677889999999999999999999999999876        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+....++..+|.++...++++.|...+.+++..       .|+.   ..++..+|.++...|++++|+..|++++++  
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-------~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--  136 (184)
T 3vtx_A           69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL-------NTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISI--  136 (184)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------Cccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence            3455677889999999999999999999999987       2333   345688999999999999999999999987  


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                            +|....++.++|.+|..+|++++|+..|++++++
T Consensus       137 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          137 ------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                  3555678999999999999999999999999984

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.81  E-value=2.5e-18  Score=175.34  Aligned_cols=175  Identities=19%  Similarity=0.184  Sum_probs=157.8

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      ..|..+.++++||.+|..+|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            46788999999999999999999999999999987        5667889999999999999999999999999997   


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                          .|+.   ..++.++|.++..+|++++|++.|++++++        .|....++.++|.+|..+|++++|+..|+++
T Consensus        73 ----~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A  137 (723)
T 4gyw_A           73 ----SPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTA  137 (723)
T ss_dssp             ----CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                2333   567899999999999999999999999987        3556778999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      +++        +|+...++.++|.++...|++++|.+.+++++++....
T Consensus       138 l~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          138 LKL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            996        57778899999999999999999999999999987654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.80  E-value=6.9e-17  Score=142.58  Aligned_cols=206  Identities=12%  Similarity=0.040  Sum_probs=175.9

Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      .|....++..+|.++...|++++|+.++++++...     ++   ...++..+|.++...|++++|+.+++++++.    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----   71 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-----PK---NELAWLVRAEIYQYLKVNDKAQESFRQALSI----   71 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHh----
Confidence            46677889999999999999999999999999852     22   3568889999999999999999999999987    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKE-GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                          .|....++..+|.++... |++++|+..++++++      .+..+....++..+|.++...|++++|+.+++++++
T Consensus        72 ----~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  141 (225)
T 2vq2_A           72 ----KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA  141 (225)
T ss_dssp             ----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                445577889999999999 999999999999986      134667788899999999999999999999999988


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHccCHHHHHH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK-EHPSFVTHLLNLAASYSRSKNFVEAER  436 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (581)
                      .       .++.   ..++..+|.++...|++++|+.++++++...     + ..   ...+..++.++...|+.++|..
T Consensus       142 ~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~a~~  203 (225)
T 2vq2_A          142 A-------QPQF---PPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQ---ADDLLLGWKIAKALGNAQAAYE  203 (225)
T ss_dssp             H-------STTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCC---HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             h-------CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCC---HHHHHHHHHHHHhcCcHHHHHH
Confidence            6       2332   3466889999999999999999999998864     2 22   3456778889999999999999


Q ss_pred             HHHHHHHH
Q 008016          437 LLRICLDI  444 (581)
Q Consensus       437 ~~~~al~~  444 (581)
                      +++.+...
T Consensus       204 ~~~~~~~~  211 (225)
T 2vq2_A          204 YEAQLQAN  211 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=2.9e-18  Score=174.86  Aligned_cols=175  Identities=21%  Similarity=0.284  Sum_probs=157.3

Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      ..|..+.+++++|.+|..+|++++|+.+|++++++.        |....++.++|.+|...|++++|+..|++++++   
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---   72 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---   72 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence            458889999999999999999999999999999872        334788999999999999999999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           +|....++.++|.++..+|++++|++.|++++++        +|....++.++|.+|...|++++|+..|+++++
T Consensus        73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALK  139 (723)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 6777899999999999999999999999999987        566788999999999999999999999999999


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY  406 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  406 (581)
                      +       .|+.   ..++.++|.++...|++++|++.+++++++....
T Consensus       140 l-------~P~~---~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          140 L-------KPDF---PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             H-------CSCC---HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             h-------CCCC---hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            7       3443   4567999999999999999999999999987554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.80  E-value=3.2e-18  Score=165.81  Aligned_cols=152  Identities=10%  Similarity=-0.028  Sum_probs=145.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016          420 NLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  499 (581)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  499 (581)
                      ..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|+|++|+.++++++++.+..+|++||.++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34455778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          500 EALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       500 ~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                      .++.+||.+|..+|+++ +|+.++++|+++.+..+|++||.+......++.++..+|++++|...|+++.+-.
T Consensus       394 ~~l~nLa~~~~~~G~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIE-VGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999 9999999999999999999999999999999999999999999999999997654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=8.1e-18  Score=152.23  Aligned_cols=212  Identities=13%  Similarity=0.057  Sum_probs=181.2

Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+.....+..+|..+...|++++|+..|+++++.       .|+++....++..+|.++...|++++|+..|++++... 
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-
Confidence            3455678899999999999999999999999875       45666667788999999999999999999999999873 


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH--------------HH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSR--------SKNFVEAERLLRICLDIMTKTVGPDDQSISFPM--------------LH  462 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~  462 (581)
                          ++++....++..+|.++..        .|++++|+..|++++..     .|+++....+.              ..
T Consensus        83 ----p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~  153 (261)
T 3qky_A           83 ----QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYE  153 (261)
T ss_dssp             ----TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence                5566778899999999999        99999999999999985     34455555454              88


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHHHHH
Q 008016          463 LGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL----------GEDDTKLLELLKRVLRIQER  532 (581)
Q Consensus       463 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~~A~~~~~~a~~~~~~  532 (581)
                      +|.+|...|++++|+..|+++++..     |+++....++..+|.++...          |+++ +|+..|+++++..  
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~-~A~~~~~~~~~~~--  225 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYR-RAVELYERLLQIF--  225 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH-HHHHHHHHHHHHC--
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHH-HHHHHHHHHHHHC--
Confidence            9999999999999999999999865     66666788999999999987          7778 9999999998853  


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCChhhhHHH
Q 008016          533 EFGSESEEVMLTLKKVVSYLDKLGRKEEKFPL  564 (581)
Q Consensus       533 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  564 (581)
                         |+++....+...++.++...|+++++..+
T Consensus       226 ---p~~~~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          226 ---PDSPLLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             ---TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             ---CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence               66778888899999999999998877654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.78  E-value=6.8e-18  Score=163.49  Aligned_cols=152  Identities=14%  Similarity=0.100  Sum_probs=145.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH
Q 008016          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS  457 (581)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  457 (581)
                      ..+..+..+|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||+++
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34456778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 008016          458 FPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQ  530 (581)
Q Consensus       458 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~  530 (581)
                      .++.+||.+|..+|++++|+.++++|+++.+..+|++||.+......++.++..++.+. +|...|.++.+.+
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~-~ae~~~~~~~~~~  465 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR-QNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999 9999999987644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.78  E-value=2.4e-17  Score=149.07  Aligned_cols=210  Identities=12%  Similarity=0.090  Sum_probs=177.6

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .+..+..++.+|..++..|++++|+..|++++...    ++++....+++.+|.++...|++++|+..|++++...    
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY----   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----
Confidence            56677899999999999999999999999987764    5556667889999999999999999999999999863    


Q ss_pred             CCCCHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH--------------HHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGS--------IGRAKKAVEIYHRVITILELNRGTESADLVLPL--------------FSLGS  295 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~--------------~~la~  295 (581)
                       ++++....+++.+|.++..        .|++++|+..|+++++..     ++++....+.              ..+|.
T Consensus        83 -p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la~  156 (261)
T 3qky_A           83 -QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAAR  156 (261)
T ss_dssp             -TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4455677889999999999        999999999999999873     3344444444              88999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHhhccC
Q 008016          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN----------GNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      +|...|++++|+..|+++++..     ++++....++..+|.+|...          |++++|+..|+++++.       
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-------  224 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-------  224 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-------
Confidence            9999999999999999999863     45566788999999999977          9999999999999986       


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGR  393 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~  393 (581)
                      .|+++....+...++.++...++++++.
T Consensus       225 ~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          225 FPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             CTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            4667777777788888888877776544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=8.9e-16  Score=159.48  Aligned_cols=260  Identities=17%  Similarity=0.172  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .-..++.+...|.+.+|++++++++-.       +..-.++....+.++.+..+. +..+..++..+....         
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~-------~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--------- 1050 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLD-------NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--------- 1050 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcC-------CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---------
Confidence            345667888999999999999998721       110112222323343333333 334444443332110         


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      .    ...+|.++...|.+++|...|+++....         .      .+...+...|++++|.++++++         
T Consensus      1051 d----~~eIA~Iai~lglyEEAf~IYkKa~~~~---------~------A~~VLie~i~nldrAiE~Aerv--------- 1102 (1630)
T 1xi4_A         1051 D----APDIANIAISNELFEEAFAIFRKFDVNT---------S------AVQVLIEHIGNLDRAYEFAERC--------- 1102 (1630)
T ss_pred             c----HHHHHHHHHhCCCHHHHHHHHHHcCCHH---------H------HHHHHHHHHhhHHHHHHHHHhc---------
Confidence            0    1235666667777777777776652110         0      0111222445555555555432         


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                          ....+|..+|..+...|++++|+..|.++             .....+..+|.++.+.|++++|++++..+.+..+
T Consensus      1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence                11345556666666666666666666543             1234455566666666666666666666555421


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                      .       +..    -..+|.+|.+.+++++...+. .            .+.. ..+..+|..+...|++++|..+|.+
T Consensus      1166 e-------~~I----dt~LafaYAKl~rleele~fI-~------------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A         1166 E-------SYV----ETELIFALAKTNRLAELEEFI-N------------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred             c-------ccc----cHHHHHHHHhhcCHHHHHHHH-h------------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            1       000    012555555555555322211 0            0111 1333456666666666666666555


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          441 CLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       441 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                      +                ..|..++.++.+.|++++|++.++++
T Consensus      1221 A----------------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1221 V----------------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             h----------------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            3                13445555566666666666555555

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.77  E-value=6.7e-16  Score=160.40  Aligned_cols=325  Identities=12%  Similarity=0.008  Sum_probs=226.9

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      .|..+...|.+++|..+|+++-.           ....      +...+...|++++|.++++++            ...
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~-----------~~~A------~~VLie~i~nldrAiE~Aerv------------n~p 1105 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV-----------NTSA------VQVLIEHIGNLDRAYEFAERC------------NEP 1105 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC-----------HHHH------HHHHHHHHhhHHHHHHHHHhc------------CCH
Confidence            46777888888888888888631           1111      122233677888888887753            224


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .+|..+|.++...|++++|+..|.++          +   ....+..+|.++...|++++|+++|..+.+..+.      
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA----------d---D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e------ 1166 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA----------D---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE------ 1166 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc----------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc------
Confidence            56888999999999999999999775          1   1456777899999999999999999988876211      


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                         ..+...+|.+|.+.+++++.. .|   +.         .+.. ..+..+|..+...|+|++|..+|.++-       
T Consensus      1167 ---~~Idt~LafaYAKl~rleele-~f---I~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~------- 1222 (1630)
T 1xi4_A         1167 ---SYVETELIFALAKTNRLAELE-EF---IN---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS------- 1222 (1630)
T ss_pred             ---ccccHHHHHHHHhhcCHHHHH-HH---Hh---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------
Confidence               111224888888888887533 33   11         1222 345579999999999999999998852       


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                                 .|..++.++...|++++|++.++++...             .+|...+..+...|++..|..+... +.
T Consensus      1223 -----------ny~rLA~tLvkLge~q~AIEaarKA~n~-------------~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A         1223 -----------NFGRLASTLVHLGEYQAAVDGARKANST-------------RTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred             -----------HHHHHHHHHHHhCCHHHHHHHHHHhCCH-------------HHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence                       3467888999999999999998886322             4777888888889999998887664 22


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC--CChHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG--EDDTKLLE  521 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~~A~~  521 (581)
                              .+++   .+..++..|...|.+++|+.++++++.+.        +.....+..++.++.+-.  +.. ++++
T Consensus      1278 --------v~~d---eLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklm-Ehlk 1337 (1630)
T 1xi4_A         1278 --------VHAD---ELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMR-EHLE 1337 (1630)
T ss_pred             --------cCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHH-HHHH
Confidence                    2333   44588899999999999999999998643        333355666777776643  223 5555


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          522 LLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       522 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      +|...+.+-+-+   ..-+....|..+..+|.+-|+++.|...+-+.
T Consensus      1338 ~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A         1338 LFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred             HHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence            555444321100   01245667889999999999999999655444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=3.4e-16  Score=138.33  Aligned_cols=184  Identities=10%  Similarity=0.037  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      ..+..+|.++...|++++|+..|+++++...       +....++..+|.++...|++++|+..++++++.        +
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--------N   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------T
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------C
Confidence            6788999999999999999999999999821       133467778999999999999999999999975        5


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCCh----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS----IMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                      |....++..+|.+|...|++++|+..++++++.       .|+++    ....++..+|.++...|++++|+..|+++++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            678889999999999999999999999999987       23333    2335688999999999999999999999986


Q ss_pred             HHHHhcCCCChH--HHHHHHHHHHHHHHccCH---------------------------HHHHHHHHHHHHHHHHhcCCC
Q 008016          402 ITEKYKGKEHPS--FVTHLLNLAASYSRSKNF---------------------------VEAERLLRICLDIMTKTVGPD  452 (581)
Q Consensus       402 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~  452 (581)
                      +        .|.  ...++.++|.+|...|+.                           ++|+.++++++++        
T Consensus       146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------  209 (228)
T 4i17_A          146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------  209 (228)
T ss_dssp             S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence            5        466  678999999999999988                           8888888888885        


Q ss_pred             CcchHHHHHHHHHHH
Q 008016          453 DQSISFPMLHLGITL  467 (581)
Q Consensus       453 ~~~~~~~~~~la~~~  467 (581)
                      .|....+...++.+.
T Consensus       210 ~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          210 SPNRTEIKQMQDQVK  224 (228)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            344444555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.72  E-value=9.2e-16  Score=135.57  Aligned_cols=168  Identities=16%  Similarity=0.156  Sum_probs=145.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGI-EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ..++..|..+...|++++|+..|+++++.          .| ....++..+|.++...|++++|+..+++++...     
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL----------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-----   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----
Confidence            45889999999999999999999999987          43 455677889999999999999999999988654     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI----LLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                        |....++..+|.++...|++++|+..+++++...     ++++    ..+.++..+|.++...|++++|+..|+++++
T Consensus        73 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           73 --YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             --CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             --cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence              5677789999999999999999999999999863     3333    2347799999999999999999999999988


Q ss_pred             HHHHhcCCCChh--hHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHH
Q 008016          274 ILELNRGTESAD--LVLPLFSLGSLFIKEGKA---------------------------VDAESVFSRILKI  316 (581)
Q Consensus       274 ~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~  316 (581)
                      +        .|.  ...++..+|.+|...|+.                           ++|+.++++++++
T Consensus       146 ~--------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          146 V--------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c--------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6        667  788999999999999988                           7888888888876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.72  E-value=1.2e-15  Score=132.14  Aligned_cols=178  Identities=14%  Similarity=0.123  Sum_probs=148.0

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (581)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (581)
                      ...|++++|...++...        .+.+....++..+|.++...|++++|+.++++++++.+..  ++.+....++.++
T Consensus         3 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence            46789999998554331        1234678899999999999999999999999999988765  4556788899999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (581)
                      |.++...|++++|+.++++++.+.+..   +.++.....++.++|.++...|++++|+.++++++.+....  .+.....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL---PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHH
Confidence            999999999999999999999998863   32444667788999999999999999999999999987664  3444556


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      .++..+|.++...|++++|+.++++++++..+.
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  180 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL  180 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            778999999999999999999999999988765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.71  E-value=2.1e-15  Score=130.60  Aligned_cols=194  Identities=12%  Similarity=0.060  Sum_probs=155.0

Q ss_pred             HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 008016          214 STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL  293 (581)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  293 (581)
                      ...|++++|...++....        ++.....++..+|.++...|++++|+.++++++.+.+..  ++.+....++..+
T Consensus         3 ~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQV   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Confidence            467999999985543321        233568889999999999999999999999999988764  3567778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHH
Q 008016          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIME  373 (581)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  373 (581)
                      |.++...|++++|+.++++++++.+.. +.+......++.++|.++...|++++|+.++++++.+.+..    .+.....
T Consensus        73 ~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~  147 (203)
T 3gw4_A           73 GMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA----DDQVAIA  147 (203)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----TCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc----cchHHHH
Confidence            999999999999999999999998754 22333678889999999999999999999999999987753    4455566


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 008016          374 NMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS  424 (581)
Q Consensus       374 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  424 (581)
                      .++.++|.++...|++++|..++++++.+.++.  .+......++..++.+
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL--EDSEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHhcccch
Confidence            778999999999999999999999999998775  3334444555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.70  E-value=3.1e-15  Score=137.53  Aligned_cols=194  Identities=10%  Similarity=0.048  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL---VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      .....+...+..+...|++++|...++++++..     +..+..   ...+..+|.++...|++++|+.++++++.....
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence            334445556788899999999999999988742     223332   345567999999999999999999999985322


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                        ..+....+.++.++|.+|...|++++|+.+|+++++..+..   +.+.+....++.++|.+|..+|++++|+.+++++
T Consensus       148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence              12233456789999999999999999999999999988763   3466777889999999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHh
Q 008016          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSK-NFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  448 (581)
                      +.+....  .+....+.++.++|.+|...| .+++|+.++++++.+.+..
T Consensus       223 l~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          223 IEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            9998765  455667889999999999999 5799999999999998865

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.70  E-value=2.2e-15  Score=138.59  Aligned_cols=196  Identities=10%  Similarity=0.030  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      ....+...+..+...|++++|+..+.++++....  ..........+..+|.++...|++++|+.+++++++.....  .
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~  149 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I  149 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence            3455667788999999999999999999886321  01112344566789999999999999999999999764321  2


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      +......++.++|.+|...|++++|+.++++++++.+..   +.+......++.++|.+|..+|++++|+.++++++.+.
T Consensus       150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~---~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            233457789999999999999999999999999887763   22223333788999999999999999999999999997


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHccCHHHH-HHHHHHHHHHHHHh
Q 008016          404 EKYKGKEHPSFVTHLLNLAASYSRSKNFVEA-ERLLRICLDIMTKT  448 (581)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  448 (581)
                      ...  .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       227 ~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          227 CRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             Hhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            543  44555678999999999999999999 88899999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.70  E-value=4.3e-15  Score=137.69  Aligned_cols=225  Identities=13%  Similarity=0.121  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH-------HCCCH-------HHHHHHHHHHHHHHHhhccCCCCC
Q 008016          304 VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC-------ANGNA-------EEAVELYKKALRVIKDSNYMSLDD  369 (581)
Q Consensus       304 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-------~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~  369 (581)
                      ++|+..|++++..        .|....+|..+|..+.       ..|++       ++|...|++++..      ..|+.
T Consensus        33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~------~~p~~   98 (308)
T 2ond_A           33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST------LLKKN   98 (308)
T ss_dssp             HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT------TTTTC
T ss_pred             HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH------hCccc
Confidence            6888999999986        3555677888888776       46885       8999999999873      12333


Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (581)
                         ..++..+|.++...|++++|...|++++.+     .+..+.  .++..+|.++...|++++|+..|+++++.     
T Consensus        99 ---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----  163 (308)
T 2ond_A           99 ---MLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED-----  163 (308)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----
T ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----
Confidence               446788999999999999999999999875     233332  27889999999999999999999999873     


Q ss_pred             CCCCcchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          450 GPDDQSISFPMLHLGITLYH-LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                         .|.....+...+.+... .|++++|...|+++++..     |++   ...+..++.++...|+.+ +|+..|++++.
T Consensus       164 ---~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~g~~~-~A~~~~~~al~  231 (308)
T 2ond_A          164 ---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDN-NTRVLFERVLT  231 (308)
T ss_dssp             ---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHTTCCHH-HHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHCCCHH-HHHHHHHHHHh
Confidence               23334555555555433 799999999999999875     343   477899999999999999 99999999987


Q ss_pred             HHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          529 IQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       529 ~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      ..     ...| .....+..++..+...|+.++|..++++++++.++
T Consensus       232 ~~-----~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          232 SG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             SS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             cc-----CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            31     1123 24567888899999999999999999999998875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=2.3e-15  Score=139.45  Aligned_cols=224  Identities=9%  Similarity=0.003  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHHHhhcCCCcc
Q 008016          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-------IGDL-------KFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      ++|+..|++++..          .|..+.++..+|..+..       .|++       ++|+..+++++...      .|
T Consensus        33 ~~a~~~~~~al~~----------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p   96 (308)
T 2ond_A           33 KRVMFAYEQCLLV----------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LK   96 (308)
T ss_dssp             HHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TT
T ss_pred             HHHHHHHHHHHHH----------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------Cc
Confidence            6888999999987          77788899999988764       5886       89999999987731      14


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ....++..+|.++...|++++|...|++++.+     .+..+.  .++..+|.++...|++++|...|+++++.      
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------  163 (308)
T 2ond_A           97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKARED------  163 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTS------
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence            45567899999999999999999999999984     222221  27889999999999999999999999875      


Q ss_pred             CCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                        .|....++...+.+.. ..|++++|...|+++++..        |.....+..++.++...|++++|..+|++++...
T Consensus       164 --~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          164 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             --TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             --CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence              2223445555555543 3799999999999999873        3446778899999999999999999999998741


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      .    ..|  .....++..++..+...|++++|..+++++++..
T Consensus       234 ~----l~p--~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          234 S----LPP--EKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             S----SCG--GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             C----CCH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            0    111  1234567788999999999999999999999875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.69  E-value=3.9e-15  Score=136.89  Aligned_cols=196  Identities=15%  Similarity=0.050  Sum_probs=156.5

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      .....+...+..+...|++++|...+.++++.....  +........+..+|.++...|++++|+.++++++.....   
T Consensus        73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---  147 (293)
T 2qfc_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT---  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC---
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---
Confidence            344556677889999999999999999988752110  001123455677999999999999999999999986432   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                       ..+......++.++|.+|...|++++|+.++++++.+.+..  ++.+.. ..++.++|.+|..+|++++|+.+++++++
T Consensus       148 -~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             -SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence             23344456788999999999999999999999999987765  233333 37899999999999999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA  490 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  490 (581)
                      +....  .+......++.++|.+|...|++++| ..++++++.+.+..
T Consensus       225 ~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~  270 (293)
T 2qfc_A          225 ISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence            87542  34455678899999999999999999 88899999987654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.1e-13  Score=133.44  Aligned_cols=239  Identities=8%  Similarity=-0.031  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC----------cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 008016          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD----------EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLE  234 (581)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  234 (581)
                      ....|..+...|++++|++.+.++++..+.....          ......++..+|.+|...|++++|..++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            4455777888999999999999988865432211          123345688999999999999999999999999876


Q ss_pred             HHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008016          235 SRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRIL  314 (581)
Q Consensus       235 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  314 (581)
                      ..  .+......+...++.++...|++++|+.++++++......  .+.+....++..+|.+|...|++++|..++++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            53  2223445667788999999999999999999999988764  3456678899999999999999999999999998


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016          315 KIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (581)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (581)
                      ......  .+.+....++..++.+|...|++++|..++++++.+....   ...+......+..+|.++...|++++|..
T Consensus       163 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          163 REFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            876554  4567788999999999999999999999999999987763   33345567788889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCh
Q 008016          395 LLEECLLITEKYKGKEHP  412 (581)
Q Consensus       395 ~~~~al~~~~~~~~~~~~  412 (581)
                      ++.+++............
T Consensus       238 ~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHhhhhhhhhhH
Confidence            999999988776444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.4e-14  Score=139.08  Aligned_cols=240  Identities=14%  Similarity=0.134  Sum_probs=192.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE---------SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                      ....|..+...|++++|++.|.++++..+......         ......++..+|.+|...|++++|.+++.+++....
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            44567778889999999999999988643321100         123345788999999999999999999999998876


Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                      ..  .+......+...++.++...|++++|+.++++++.+..+.    .+......++.++|.+|...|++++|..++++
T Consensus        87 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           87 QF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE----KRVFLKHSLSIKLATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             TS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS----SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Hc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            53  2223345667788999999999999999999999998763    34445577889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHH
Q 008016          399 CLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEK  478 (581)
Q Consensus       399 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  478 (581)
                      ++......  .+.+....++..+|.+|...|++++|..++++++.+...... .+......+..+|.++...|++.+|..
T Consensus       161 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~y~~A~~  237 (434)
T 4b4t_Q          161 LLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC-PTQTVAELDLMSGILHCEDKDYKTAFS  237 (434)
T ss_dssp             HHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             HHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            98876554  457788899999999999999999999999999998766522 123345677888999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCh
Q 008016          479 LVLEALYIREIAFGKDSL  496 (581)
Q Consensus       479 ~~~~a~~~~~~~~~~~~~  496 (581)
                      +|.++++...........
T Consensus       238 ~~~~a~~~~~~~~~~~~~  255 (434)
T 4b4t_Q          238 YFFESFESYHNLTTHNSY  255 (434)
T ss_dssp             HHHHHHHHHHHTTTSSCH
T ss_pred             HHHHHHHHhhhhhhhhhH
Confidence            999999988766444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.67  E-value=8.3e-15  Score=134.70  Aligned_cols=194  Identities=11%  Similarity=0.061  Sum_probs=159.0

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLL---DAILLHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (581)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (581)
                      .....+...+..+...|++++|...++++....    ...+..   ...+..+|.++...|++++|+.++++++.+... 
T Consensus        73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-  147 (293)
T 3u3w_A           73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-  147 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-
T ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-
Confidence            334445556778889999999999999987743    222332   345566899999999999999999999985322 


Q ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          237 YGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       237 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                       ..+....+.++.++|.+|...|++++|+.+|+++++..+.. ..+.+....++.++|.+|..+|++++|+.++++++++
T Consensus       148 -~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          148 -GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             -CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence             22333456789999999999999999999999999988764 2356777889999999999999999999999999999


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhh
Q 008016          317 YTKVYGENDGRVGMAMCSLAHAKCANG-NAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~  362 (581)
                      ....  .+....+.++.++|.+|...| ++++|+.++++++.+.+..
T Consensus       226 ~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~  270 (293)
T 3u3w_A          226 SCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL  270 (293)
T ss_dssp             HHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8765  445667899999999999999 5799999999999998863

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.67  E-value=1.1e-15  Score=145.66  Aligned_cols=122  Identities=16%  Similarity=0.070  Sum_probs=117.4

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      ..|++++|+.++++++++.++.+|++||.++.++.+||.+|..+|++++|+.++++++++.++.+|++||+++..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016          465 ITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  506 (581)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  506 (581)
                      .+|..+|++++|+.+|++|+++.+..+|++||.+.....+|.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            999999999999999999999999999999999888776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.67  E-value=2.3e-14  Score=125.91  Aligned_cols=177  Identities=13%  Similarity=0.064  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ...++.+|..+...|++++|+..|+++++.     .++++....++..+|.+|...|++++|+..|+++++..     ++
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~   73 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cC
Confidence            456888999999999999999999999987     24456667899999999999999999999999999863     55


Q ss_pred             CchHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHH------------
Q 008016          325 DGRVGMAMCSLAHAKCA------------------NGNAEEAVELYKKALRVIKDSNYMSLDDSIMEN------------  374 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------  374 (581)
                      ++....++..+|.++..                  .|++++|+..|+++++.       .|+.+....            
T Consensus        74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-------YPNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-------CTTCTTHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-------CcCChhHHHHHHHHHHHHHHH
Confidence            66666788888988876                  67899999999999876       334333222            


Q ss_pred             --HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          375 --MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       375 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        ....+|.+|...|++++|+..|+++++..     ++++....++..+|.+|...|++++|+..++++..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence              12568899999999999999999999874     55666778999999999999999999999997765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.66  E-value=1.6e-16  Score=147.88  Aligned_cols=332  Identities=13%  Similarity=0.012  Sum_probs=147.9

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      -+.|+.++|.+++++.-            .   +.++..+|.++...|++++|++.|.++.            ....+..
T Consensus        14 ~~~~~ld~A~~fae~~~------------~---~~vWs~La~A~l~~g~~~eAIdsfika~------------D~~~y~~   66 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN------------E---PAVWSQLAKAQLQKGMVKEAIDSYIKAD------------DPSSYME   66 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC------------C---hHHHHHHHHHHHHcCCHHHHHHHHHcCC------------CHHHHHH
Confidence            36678899998888751            2   2489999999999999999999997631            1125677


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      ++..+...|++++|+.+++.+.+..        +. ..+...++.+|.+.|++.++.++++.             |. ..
T Consensus        67 V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~  123 (449)
T 1b89_A           67 VVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA  123 (449)
T ss_dssp             ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence            8888899999999999998887631        11 45567789999999999998877741             21 24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      ++..+|..+...|++++|..+|.++                ..+..+|.++.+.|++++|++.++++..           
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~-----------  176 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS-----------  176 (449)
T ss_dssp             -------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC-----------
Confidence            8999999999999999999999975                2477899999999999999999998821           


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                          ..+|..++.++...|+++.|..+....         ..+|+.   ...++.+|.+.|++++|+.++++++.+    
T Consensus       177 ----~~~Wk~v~~aCv~~~ef~lA~~~~l~L---------~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l----  236 (449)
T 1b89_A          177 ----TRTWKEVCFACVDGKEFRLAQMCGLHI---------VVHADE---LEELINYYQDRGYFEELITMLEAALGL----  236 (449)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHTTTTT---------TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred             ----chhHHHHHHHHHHcCcHHHHHHHHHHH---------HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC----
Confidence                345677888999999999996655431         134544   335888999999999999999999873    


Q ss_pred             cCCCCcchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  526 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a  526 (581)
                          ++.....+..||.+|.+  -++..+.++.|...+.+.+-+..   -.....+..+..+|...++++ .|+..+-+.
T Consensus       237 ----e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~---~~~~~~w~e~~~ly~~~~e~d-~A~~tm~~h  308 (449)
T 1b89_A          237 ----ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRA---AEQAHLWAELVFLYDKYEEYD-NAIITMMNH  308 (449)
T ss_dssp             ----TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHH---HHTTTCHHHHHHHHHHTTCHH-HHHHHHHHS
T ss_pred             ----cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHHHHhhchHH-HHHHHHHhC
Confidence                35556677888877765  45666677666655443320000   011234778899999999999 776654432


Q ss_pred             HH------HHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016          527 LR------IQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  569 (581)
Q Consensus       527 ~~------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  569 (581)
                      ..      .+..++.  .+...+.++.....|.  +....++.-+..++
T Consensus       309 ~~~a~~~~~f~~~~~--kv~n~elyYkai~fyl--~~~p~~l~~ll~~l  353 (449)
T 1b89_A          309 PTDAWKEGQFKDIIT--KVANVELYYRAIQFYL--EFKPLLLNDLLMVL  353 (449)
T ss_dssp             TTTTCCHHHHHHHHH--HCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred             ChhhhhhHHHHHHHh--chhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence            11      1111100  1223455666666665  44455555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.65  E-value=3.2e-14  Score=125.02  Aligned_cols=177  Identities=10%  Similarity=-0.004  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (581)
                      ...+..+|..+...|++++|+..|++++..       .|+.+....++..+|.++...|++++|+..|+++++..     
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-------YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----
Confidence            356788999999999999999999999986       35555556678999999999999999999999999873     


Q ss_pred             CCChHHHHHHHHHHHHHHH------------------ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH-----------
Q 008016          409 KEHPSFVTHLLNLAASYSR------------------SKNFVEAERLLRICLDIMTKTVGPDDQSISFP-----------  459 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-----------  459 (581)
                      ++++....++..+|.++..                  .|++++|+..|+++++.     .|+++....+           
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~  146 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRL  146 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHH
Confidence            5556666688888888876                  67999999999999874     2444433222           


Q ss_pred             ---HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          460 ---MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       460 ---~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                         ...+|.+|...|++++|+..|+++++..     |+++....++..+|.++.+.|+.+ +|+..++++..
T Consensus       147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~-~A~~~~~~l~~  212 (225)
T 2yhc_A          147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNA-QAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcH-HHHHHHHHHHh
Confidence               2567899999999999999999999876     677777789999999999999999 99999987765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.65  E-value=1.2e-14  Score=123.71  Aligned_cols=170  Identities=16%  Similarity=0.095  Sum_probs=145.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      ......+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..+++++++.     
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----   71 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-----   71 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence            445678889999999999999999999988753        3445678899999999999999999999999987     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        .++.   ..++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++.
T Consensus        72 --~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           72 --APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--------PINFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence              2222   3466889999999999999999999998762        33456788999999999999999999999988


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          444 IMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .        .|....++..+|.++...|++++|..+++++++..
T Consensus       139 ~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          139 L--------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             H--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             c--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            5        34556788999999999999999999999998875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.65  E-value=4.2e-15  Score=141.58  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=117.8

Q ss_pred             HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016          427 RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  506 (581)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  506 (581)
                      ..|++++|+.++++++++.++.++++||.++.++.+||.+|..+|+|++|+.++++++++.++.+|++||+++..+++||
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 008016          507 SIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVV  549 (581)
Q Consensus       507 ~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  549 (581)
                      .+|..+|+++ +|+.+|++|+++.+..+|++||.+..+..+|.
T Consensus       390 ~~~~~qg~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKA-AGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHH-HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            9999999999 99999999999999999999999988777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.65  E-value=1.1e-14  Score=123.94  Aligned_cols=172  Identities=16%  Similarity=0.105  Sum_probs=147.5

Q ss_pred             ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Q 008016          158 GIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  237 (581)
                      .......+..+|.++...|++++|+..++++....       |....++..+|.++...|++++|+.++++++...    
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----   72 (186)
T 3as5_A            4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA----   72 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Confidence            44567788999999999999999999998865442       3345678999999999999999999999998862    


Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                       +   ....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|..+++++++. 
T Consensus        73 -~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-  139 (186)
T 3as5_A           73 -P---DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-  139 (186)
T ss_dssp             -T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             -C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Confidence             2   23567889999999999999999999999987        3445678899999999999999999999999886 


Q ss_pred             HHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          318 TKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       318 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                             .|....++..+|.++...|++++|..+++++++...
T Consensus       140 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          140 -------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                   234467889999999999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.64  E-value=3.9e-15  Score=142.34  Aligned_cols=132  Identities=10%  Similarity=-0.032  Sum_probs=125.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (581)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (581)
                      .-+..+|++++|+..+++++++..+.+|++||.++.++.++|.+|..+|++++|+.++++++++.++.+|++||.++..+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL  512 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  512 (581)
                      ++||.+|..+|++++|+.++++|+++.+..+|++||.+..++.+|+.+....
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.63  E-value=4.5e-14  Score=117.22  Aligned_cols=158  Identities=19%  Similarity=0.163  Sum_probs=137.8

Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      +.+....++..+|.++...|++++|+.+++++++..+..  .+......++..+|.++...|++++|+.++++++.+.+.
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345567889999999999999999999999999998775  344556788999999999999999999999999999876


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                      .    +++.....++.++|.++...|++++|+.++++++......  .+.+....++..+|.++...|++++|+.+++++
T Consensus        82 ~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           82 L----KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             T----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             h----CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3    4556667788999999999999999999999999998765  345667788999999999999999999999999


Q ss_pred             HHHHHH
Q 008016          442 LDIMTK  447 (581)
Q Consensus       442 l~~~~~  447 (581)
                      +++.++
T Consensus       156 ~~~~~~  161 (164)
T 3ro3_A          156 LEISRE  161 (164)
T ss_dssp             HHHHTT
T ss_pred             HHHHHH
Confidence            987643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=2e-15  Score=155.22  Aligned_cols=200  Identities=15%  Similarity=0.150  Sum_probs=163.1

Q ss_pred             HHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          129 IMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      ...|++++|++.++++++..-..  .....|....++..+|.++...|++++|+..++++++..       |....+++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~  472 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDA--DGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWY  472 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccc--cccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHH
Confidence            78899999999999998210000  012267788899999999999999999999999998875       455678899


Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 008016          209 MGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL  288 (581)
Q Consensus       209 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  288 (581)
                      +|.++...|++++|+..|++++++.        |....++.++|.++...|++++ +..|++++++        +|....
T Consensus       473 lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~  535 (681)
T 2pzi_A          473 RAVAELLTGDYDSATKHFTEVLDTF--------PGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVIS  535 (681)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHH
Confidence            9999999999999999999999863        2336788999999999999999 9999999998        666788


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHhh
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIKDS  362 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~  362 (581)
                      +++++|.++...|++++|+..|++++++        +|....++.++|.++...++.+++ ..-+.+++......
T Consensus       536 a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          536 AAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            9999999999999999999999999864        677889999999999888876666 67777777776653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.63  E-value=1.7e-16  Score=147.84  Aligned_cols=294  Identities=13%  Similarity=0.044  Sum_probs=128.1

Q ss_pred             HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008016          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM  251 (581)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  251 (581)
                      ....|+.++|.+++++.         ++|   .+|..+|.++...|++++|++.|.++-.             ...+..+
T Consensus        13 l~~~~~ld~A~~fae~~---------~~~---~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y~~V   67 (449)
T 1b89_A           13 IEHIGNLDRAYEFAERC---------NEP---AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSYMEV   67 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHccCHHHHHHHHHhC---------CCh---HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHHHHH
Confidence            34668889999988875         223   3788999999999999999999976421             3367778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      +..+...|++++|+.+++.+++..        ++ +.+...++.+|.+.|++.++.++++.             |. ..+
T Consensus        68 ~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~a  124 (449)
T 1b89_A           68 VQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING-------------PN-NAH  124 (449)
T ss_dssp             --------------------------------------------------CHHHHTTTTTC-------------C-----
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HHH
Confidence            889999999999999998887641        11 45677889999999999998877742             22 248


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH  411 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  411 (581)
                      +..+|..+...|++++|..+|.++                  ..+..+|.++..+|++++|++.++++.          +
T Consensus       125 ~~~IGd~~~~~g~yeeA~~~Y~~a------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~  176 (449)
T 1b89_A          125 IQQVGDRCYDEKMYDAAKLLYNNV------------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S  176 (449)
T ss_dssp             ------------CTTTHHHHHHHT------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh------------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C
Confidence            999999999999999999999975                  134789999999999999999999872          1


Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (581)
                         ..+|...+.++...|+++.|..+.....         .+|+.   ...++..|.+.|++++|+.++++++.+.    
T Consensus       177 ---~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le----  237 (449)
T 1b89_A          177 ---TRTWKEVCFACVDGKEFRLAQMCGLHIV---------VHADE---LEELINYYQDRGYFEELITMLEAALGLE----  237 (449)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHTTTTTT---------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST----
T ss_pred             ---chhHHHHHHHHHHcCcHHHHHHHHHHHH---------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc----
Confidence               2467788899999999999966555311         24544   3468889999999999999999997632    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          492 GKDSLPVGEALDCLVSIQTRLG--EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       492 ~~~~~~~~~~~~~la~~~~~~g--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                          +.....+..|+.+|.+-.  +.. +.++.|...+.+.+-+   ..-+....|..+..+|...++++.|...+-+.
T Consensus       238 ----~ah~~~ftel~il~~ky~p~k~~-ehl~~~~~~ini~k~~---~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          238 ----RAHMGMFTELAILYSKFKPQKMR-EHLELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             ----TCCHHHHHHHHHHHHTTCHHHHH-HHHHHHSTTSCHHHHH---HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHhcCcHHH---HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence                333466777888877653  222 3333333322221100   00033456788999999999999998865543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=1.7e-15  Score=123.41  Aligned_cols=147  Identities=15%  Similarity=0.102  Sum_probs=121.8

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 008016          208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLV  287 (581)
Q Consensus       208 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  287 (581)
                      .||.++...|++++|+..+++++.        ..|.....++.+|.+|...|++++|+.+|++++++        +|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~--------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTP--------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSC--------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcc--------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            478889999999999999999876        34666778899999999999999999999999998        67778


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHhhccCC
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL-YKKALRVIKDSNYMS  366 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~  366 (581)
                      .++..+|.+|...|++++|+..|++++++        +|....++.++|.+|...|++++|... +++++++       .
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------~  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------F  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-------S
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-------C
Confidence            89999999999999999999999999987        456678899999999999999887765 5899987       4


Q ss_pred             CCChHHHHHHHHHHHHHHHcCC
Q 008016          367 LDDSIMENMRIDLAELLHIVGR  388 (581)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~  388 (581)
                      |+++.   ++...+.++...|+
T Consensus       131 P~~~~---~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 PGSPA---VYKLKEQLLDCEGE  149 (150)
T ss_dssp             TTCHH---HHHHHHHHHHTCCC
T ss_pred             cCCHH---HHHHHHHHHHHhCc
Confidence            55544   44667777777765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.63  E-value=2.9e-15  Score=153.99  Aligned_cols=200  Identities=14%  Similarity=0.103  Sum_probs=160.1

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016          256 GSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (581)
Q Consensus       256 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (581)
                      ...|++++|+..++++++..-......+|....++..+|.++...|++++|+..|+++++.        +|....++.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l  473 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR  473 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence            7789999999999999822111112235677889999999999999999999999999986        35567889999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (581)
                      |.++...|++++|+..|++++++       .|+.   ..++.++|.++...|++++ +..|++++++        .|...
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l-------~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~  534 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDT-------FPGE---LAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVI  534 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-------STTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchH
Confidence            99999999999999999999997       3333   4566899999999999999 9999999987        35556


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHH
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA-EKLVLEALYIREIA  490 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~~~~  490 (581)
                      .++.++|.++...|++++|+..|++++++        +|....++.++|.++...|+.+++ ...++++++.....
T Consensus       535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            78999999999999999999999999873        677888999999999887776665 66777777666544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=1.7e-15  Score=123.37  Aligned_cols=147  Identities=12%  Similarity=0.108  Sum_probs=120.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHH
Q 008016          250 GMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVG  329 (581)
Q Consensus       250 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  329 (581)
                      .||.++...|++++|+..+++++..        .|.....++.+|.+|...|++++|+.+|++++++        +|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~   65 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP   65 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence            4788999999999999999988764        5667788899999999999999999999999987        46667


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcC
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL-LEECLLITEKYKG  408 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~  408 (581)
                      .++..+|.+|...|++++|+..|++++++       .|+.   ..++.++|.++...|++++|... +++++++.     
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----  130 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL-------NPTQ---KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----  130 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----
Confidence            89999999999999999999999999997       3333   45678999999999999887765 58998872     


Q ss_pred             CCChHHHHHHHHHHHHHHHccC
Q 008016          409 KEHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~  430 (581)
                         |....++...+.++..+|+
T Consensus       131 ---P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 ---PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             ---TTCHHHHHHHHHHHHTCCC
T ss_pred             ---cCCHHHHHHHHHHHHHhCc
Confidence               3444567778888887775

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.62  E-value=6.1e-15  Score=141.00  Aligned_cols=131  Identities=9%  Similarity=-0.058  Sum_probs=125.5

Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  503 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (581)
                      -+..+|++++|+.++++++++..+.++++||.++.++.++|.+|..+|+|++|+.++++++++.+..+|++||.++..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            35578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Q 008016          504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL  555 (581)
Q Consensus       504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~  555 (581)
                      +||.+|..+|+++ +|+.++++|+++.+..+|++||.+..++.+|+.+....
T Consensus       376 nLa~~~~~~g~~~-eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          376 KVGKLQLHQGMFP-QAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999 99999999999999999999999999999999887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=4.2e-14  Score=122.44  Aligned_cols=166  Identities=17%  Similarity=0.156  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS----------------LAHAKCANGNAEEAVE  350 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  350 (581)
                      +..+...|..+...|++++|+..|+++++.        +|....++..                +|.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            456677899999999999999999999987        4566677777                9999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016          351 LYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       351 ~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (581)
                      .|++++++       .|+.   ..++.++|.++...|++++|+..|++++++        .|....++.++|.+|...|+
T Consensus        76 ~~~~al~~-------~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           76 FYKELLQK-------APNN---VDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhH
Confidence            99999997       3333   456789999999999999999999999987        35556789999999987765


Q ss_pred             H--HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          431 F--VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       431 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .  ..+...+++++.       + .| ...+++.+|.++...|++++|+..|++++++.
T Consensus       138 ~~~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          138 QEKKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4  445555555432       1 22 23467788999999999999999999998754

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.62  E-value=8e-14  Score=115.70  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=137.8

Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      +.+..+.++..+|.++...|++++|+.++++++.+.+..  .+......++..+|.++...|++++|+.++++++++...
T Consensus         4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~   81 (164)
T 3ro3_A            4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345667789999999999999999999999999998774  344566788999999999999999999999999999876


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                      .  ++.+....++..+|.++...|++++|..+++++++..+..  .+.+....++..+|.++...|++++|..+++++++
T Consensus        82 ~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           82 L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4  3455667889999999999999999999999999987765  34556788899999999999999999999999999


Q ss_pred             HHHh
Q 008016          358 VIKD  361 (581)
Q Consensus       358 ~~~~  361 (581)
                      +.++
T Consensus       158 ~~~~  161 (164)
T 3ro3_A          158 ISRE  161 (164)
T ss_dssp             HHTT
T ss_pred             HHHH
Confidence            8654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=4.2e-14  Score=122.45  Aligned_cols=165  Identities=14%  Similarity=0.132  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH----------------HHHHHHHcCCHHHHHH
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS----------------LGSLFIKEGKAVDAES  308 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~  308 (581)
                      +..+...|..+...|++++|+..|+++++.        .|....++..                +|.+|...|++++|+.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~   75 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL   75 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence            445677899999999999999999999998        6677777888                9999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016          309 VFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (581)
Q Consensus       309 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (581)
                      .|++++++        +|....++.++|.++...|++++|+..|++++++       .|++   ..++.++|.+|...|+
T Consensus        76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~P~~---~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-------EADN---LAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC---HHHHHHHHHHHHHHhH
Confidence            99999987        4566788999999999999999999999999997       3444   4567899999987765


Q ss_pred             h--HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 008016          389 G--QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDI  444 (581)
Q Consensus       389 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (581)
                      .  ..+...+++++.       + .+ ...+++.+|.++...|++++|+..|++++++
T Consensus       138 ~~~~~~~~~~~~~~~-------~-~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          138 QEKKKLETDYKKLSS-------P-TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHC---C-------C-CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhC-------C-Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3  344444444321       1 22 2346777899999999999999999999984

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.54  E-value=3.2e-13  Score=105.89  Aligned_cols=103  Identities=14%  Similarity=0.053  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      -+|..+..+.++|..|+..|++++|+..|++++++        .|....++.++|.+|..+|++++|+..+++++++   
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---   76 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---   76 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence            45888999999999999999999999999999998        5667889999999999999999999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                           +|....++.++|.++...|++++|+..|++++++
T Consensus        77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 4566788999999999999999999999999997

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=2.1e-13  Score=106.88  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=103.1

Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      .-+|..+..+..+|..++..|++++|+..|++++++.        |....++.++|.+|...|++++|+..+++++++  
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--   76 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--   76 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--
Confidence            3458889999999999999999999999999999862        334678999999999999999999999999998  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (581)
                            +|....++..+|.++..+|++++|+..|++++++        +|....++..++.+
T Consensus        77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~  124 (126)
T 4gco_A           77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNC  124 (126)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred             ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHh
Confidence                  5667889999999999999999999999999987        45555666666654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.52  E-value=2.8e-12  Score=115.98  Aligned_cols=237  Identities=6%  Similarity=-0.108  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHh
Q 008016          117 QLLELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIG--DLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~  193 (581)
                      ....+........+.|.+ ++|+..+++++.+          +|+...+++..+.++...|  ++++++.+++.++... 
T Consensus        31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~----------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-   99 (306)
T 3dra_A           31 DYKQIMGLLLALMKAEEYSERALHITELGINE----------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-   99 (306)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-
Confidence            334466666677777777 5899999999998          9999999999999999999  9999999999988764 


Q ss_pred             hcCCCcchHHHHHHHHHHHH----Hhc---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHH--HH
Q 008016          194 SLKDDEPLLDAILLHMGSMY----STL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAK--KA  264 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A  264 (581)
                            |....+|+..+.++    ...   +++++++.++.+++..        +|....++...+.+....|.++  ++
T Consensus       100 ------Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~E  165 (306)
T 3dra_A          100 ------EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKE  165 (306)
T ss_dssp             ------TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHH
T ss_pred             ------cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHH
Confidence                  44455677788877    656   7899999999999985        2344788999999999999998  99


Q ss_pred             HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016          265 VEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK------AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (581)
Q Consensus       265 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (581)
                      ++++.++++.        +|....++...+.+....|+      ++++++++.+++..        +|....+++.++.+
T Consensus       166 L~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~l  229 (306)
T 3dra_A          166 LSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGI  229 (306)
T ss_dssp             HHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHH
Confidence            9999999987        67778899999999999887      89999999999986        56777889999999


Q ss_pred             HHHCCCHHH-HHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          339 KCANGNAEE-AVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       339 ~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                      +...|+..+ ...++.+++...       ...+....++..++.++...|+.++|+++|+.+.+
T Consensus       230 l~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          230 HERFDRSITQLEEFSLQFVDLE-------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHTTCCGGGGHHHHHTTEEGG-------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHhcc-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            999998555 444555554431       01122244668899999999999999999999765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.51  E-value=5.2e-13  Score=115.85  Aligned_cols=177  Identities=14%  Similarity=0.102  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH
Q 008016          135 NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS  214 (581)
Q Consensus       135 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  214 (581)
                      .+|+.+|+++.+            ...+.+++.+|.+|...+++++|+.+|+++.+.         ....+++.+|.+|.
T Consensus         3 ~eA~~~~~~aa~------------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------g~~~a~~~lg~~y~   61 (212)
T 3rjv_A            3 TEPGSQYQQQAE------------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---------GDGDALALLAQLKI   61 (212)
T ss_dssp             -CTTHHHHHHHH------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHH------------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Confidence            356777877764            245778999999999999999999999998653         12356889999998


Q ss_pred             hcc----CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          215 TLE----NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS----IGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       215 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                      . +    ++++|+.+|+++.+.       .   ...++.++|.+|..    .+++++|+.+|+++.+.      .+....
T Consensus        62 ~-~g~~~~~~~A~~~~~~A~~~-------g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~  124 (212)
T 3rjv_A           62 R-NPQQADYPQARQLAEKAVEA-------G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAA  124 (212)
T ss_dssp             S-STTSCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHH
T ss_pred             c-CCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcch
Confidence            8 7    999999999999652       2   25688999999998    89999999999999865      111145


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHH
Q 008016          287 VLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN-G-----NAEEAVELYKKAL  356 (581)
Q Consensus       287 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al  356 (581)
                      +.++++||.+|..    .+++++|+.+|+++.+.      +.   ...++.+||.+|... |     ++++|+.+|+++.
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL------SR---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT------SC---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc------CC---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence            7899999999999    89999999999999874      12   234788999999874 3     8999999999998


Q ss_pred             HH
Q 008016          357 RV  358 (581)
Q Consensus       357 ~~  358 (581)
                      +.
T Consensus       196 ~~  197 (212)
T 3rjv_A          196 LE  197 (212)
T ss_dssp             HH
T ss_pred             Hc
Confidence            86

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=6.6e-13  Score=121.20  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=143.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      |.....+..+|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+++++..     
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----  180 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----  180 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence            345667889999999999999999999999986        4556788999999999999999999999998764     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                        .|+.   .......+..+...++.++|+..+++++..        .|+...++.++|.++...|++++|+..|++++.
T Consensus       181 --~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~  247 (287)
T 3qou_A          181 --DQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLR  247 (287)
T ss_dssp             --GCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --hcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence              2322   233456667788889999999999999887        356667899999999999999999999999998


Q ss_pred             HHHHhcCCCCcch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          444 IMTKTVGPDDQSI--SFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       444 ~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      .        +|..  ..++..++.++...|+.++|...|++++..
T Consensus       248 ~--------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          248 X--------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             H--------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             c--------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            5        3444  678999999999999999999999998764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=1.2e-12  Score=113.59  Aligned_cols=177  Identities=16%  Similarity=0.132  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Q 008016          262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA  341 (581)
Q Consensus       262 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  341 (581)
                      .+|+.+|+++.+.          ..+.+++.+|.+|...+++++|+.+|+++.+.          ....++.+||.+|..
T Consensus         3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~   62 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR   62 (212)
T ss_dssp             -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence            3577788887754          23678999999999999999999999999863          235788999999998


Q ss_pred             CC----CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChH
Q 008016          342 NG----NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPS  413 (581)
Q Consensus       342 ~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~  413 (581)
                       +    ++++|+.+|+++.+.         .+   ..++.+||.+|..    .+++++|+.+|+++.+.      .....
T Consensus        63 -~g~~~~~~~A~~~~~~A~~~---------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~  123 (212)
T 3rjv_A           63 -NPQQADYPQARQLAEKAVEA---------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDA  123 (212)
T ss_dssp             -STTSCCHHHHHHHHHHHHHT---------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHH
T ss_pred             -CCCCCCHHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcc
Confidence             7    999999999999653         12   3466899999987    89999999999998764      11114


Q ss_pred             HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHH
Q 008016          414 FVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-N-----RDKEAEKLVLEA  483 (581)
Q Consensus       414 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a  483 (581)
                      ...++.+||.+|..    .+++++|+.+|+++.+.         +....++.+||.+|... |     ++++|+.+|+++
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            56789999999999    88999999999999873         22334789999999864 3     899999999999


Q ss_pred             HHH
Q 008016          484 LYI  486 (581)
Q Consensus       484 ~~~  486 (581)
                      .+.
T Consensus       195 ~~~  197 (212)
T 3rjv_A          195 CLE  197 (212)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.50  E-value=7.9e-13  Score=120.68  Aligned_cols=166  Identities=12%  Similarity=0.021  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      ...++..|..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..++++....     
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-----  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQL----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-----  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-----
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-----
Confidence            345788999999999999999999999988          88888999999999999999999999999875543     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                        |.........+..+...++.++|+..+++++...        |....++..+|.++...|++++|+..|+++++.   
T Consensus       182 --p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---  248 (287)
T 3qou_A          182 --QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX---  248 (287)
T ss_dssp             --CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             --cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---
Confidence              3334455667777888999999999999998862        344678999999999999999999999999998   


Q ss_pred             hcCCCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          278 NRGTESADL--VLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       278 ~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                           +|..  ..++..++.++...|+.++|...|++++..
T Consensus       249 -----~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          249 -----DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             -----CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             -----ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                 3444  778999999999999999999999998864

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.49  E-value=1.9e-11  Score=110.61  Aligned_cols=226  Identities=10%  Similarity=-0.058  Sum_probs=184.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG--KAVDAESVFSRILKIYTKVYGENDGRVGMAM  332 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  332 (581)
                      .......++|+..+.+++.+        +|....+++..+.++...|  ++++++..+.+++..        +|....++
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW  106 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIW  106 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHH
Confidence            33344557999999999998        7888899999999999999  999999999999986        55666788


Q ss_pred             HHHHHHH----HHC---CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHH
Q 008016          333 CSLAHAK----CAN---GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--EGRELLEECLLIT  403 (581)
Q Consensus       333 ~~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~  403 (581)
                      +..+.++    ...   +++++++.++.++++..       |.+   ..++...+.++...|+++  +++++++++++. 
T Consensus       107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-------pkn---y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-  175 (306)
T 3dra_A          107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-------PKN---HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-  175 (306)
T ss_dssp             HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-
Confidence            8888888    666   88999999999999872       222   557788999999999998  999999999876 


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH-H
Q 008016          404 EKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE-A  476 (581)
Q Consensus       404 ~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A  476 (581)
                             ++....++...+.+....|+      ++++++++.+++..        +|....++..++.++...|+..+ .
T Consensus       176 -------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~  240 (306)
T 3dra_A          176 -------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQL  240 (306)
T ss_dssp             -------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred             -------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHH
Confidence                   45566788999999988887      99999999999985        67778899999999999998655 4


Q ss_pred             HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          477 EKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       477 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                      ..++.++++..     ...+....++..++.++.+.|+.+ +|+++|+.+.+
T Consensus       241 ~~~~~~~~~~~-----~~~~~s~~al~~la~~~~~~~~~~-~A~~~~~~l~~  286 (306)
T 3dra_A          241 EEFSLQFVDLE-----KDQVTSSFALETLAKIYTQQKKYN-ESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHTTEEGG-----GTEESCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-----CCCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHh
Confidence            44555555421     123455578999999999999999 99999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=3.1e-13  Score=113.62  Aligned_cols=163  Identities=11%  Similarity=0.085  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      .++..+..+...|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..++++....    + +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p-~   72 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY----Q-D   72 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----C-C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----C-C
Confidence            3678889999999999999999999987          78888999999999999999999999999876543    2 2


Q ss_pred             chHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          200 PLLDAILLHMGSMY-STLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       200 ~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      +..   ...++.+. ...+...+|+..+++++...        |....++..+|.++...|++++|+..++++++.    
T Consensus        73 ~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----  137 (176)
T 2r5s_A           73 NSY---KSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV----  137 (176)
T ss_dssp             HHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred             hHH---HHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence            322   23334332 23345556899999998852        334678999999999999999999999999876    


Q ss_pred             cCCCChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          279 RGTESAD--LVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       279 ~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                          .|.  ...++..+|.++...|+.++|...|++++..
T Consensus       138 ----~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ----NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ----CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ----CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                332  2457889999999999999999999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=2.7e-13  Score=113.96  Aligned_cols=164  Identities=19%  Similarity=0.081  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCC
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSL  367 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  367 (581)
                      ..+..+|..+...|++++|+..|+++++.        +|....++..+|.++...|++++|+..+++++..       .|
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p   71 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------YQ   71 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------GC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------cC
Confidence            45678899999999999999999999986        3556788999999999999999999999998764       23


Q ss_pred             CChHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 008016          368 DDSIMENMRIDLAELL-HIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMT  446 (581)
Q Consensus       368 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  446 (581)
                       .+..   ...++.+. ...++..+|+..+++++..        .|....++..+|.++...|++++|+..|+++++.  
T Consensus        72 -~~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--  137 (176)
T 2r5s_A           72 -DNSY---KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKV--  137 (176)
T ss_dssp             -CHHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             -ChHH---HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--
Confidence             3322   22233332 2334445688999998876        3555678999999999999999999999999873  


Q ss_pred             HhcCCCCcc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          447 KTVGPDDQS--ISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       447 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                            +|.  ...++..++.++...|+.++|...|++++..
T Consensus       138 ------~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          138 ------NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             ------CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ------CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence                  333  2457889999999999999999999998763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.48  E-value=2.1e-12  Score=113.70  Aligned_cols=212  Identities=14%  Similarity=0.008  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHHcCChHHHHHHHH
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDII-------ALGYVYIGDLKFVQSLLD  186 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~  186 (581)
                      ..+.+..++..+..+ ..+++..|...|.++++.          .|....++..+       +.++...++..+++..++
T Consensus         3 ~~~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~----------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~   71 (282)
T 4f3v_A            3 MTDRLASLFESAVSM-LPMSEARSLDLFTEITNY----------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS   71 (282)
T ss_dssp             HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH
T ss_pred             chHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh----------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence            345567788888776 689999999999999998          89999999999       788888888888888888


Q ss_pred             HHHHHHhhcCCCcc--------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008016          187 MMSGIVDSLKDDEP--------------LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMA  252 (581)
Q Consensus       187 ~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  252 (581)
                      +.+.+....-....              ....+...++.++...|++++|...|..++.        ..|... ..+.+|
T Consensus        72 ~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a  142 (282)
T 4f3v_A           72 GSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKA  142 (282)
T ss_dssp             HTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHH
T ss_pred             HHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHH
Confidence            76664322111110              1234556788899999999999999987764        234445 889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHH
Q 008016          253 KVLGSIGRAKKAVEIYHRVITILELNRGTESAD-LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGM  330 (581)
Q Consensus       253 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~  330 (581)
                      .++...+++++|+.+++++...       .++. ...+++.+|.++...|++++|+.+|++++.      ++..|. ...
T Consensus       143 ~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~d  209 (282)
T 4f3v_A          143 VVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARA  209 (282)
T ss_dssp             HHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHH
T ss_pred             HHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHH
Confidence            9999999999999999865432       1232 245889999999999999999999999874      232244 677


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +...+|.++..+|+.++|...|++++..
T Consensus       210 a~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          210 IAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            8999999999999999999999999986

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=3.9e-12  Score=99.94  Aligned_cols=108  Identities=13%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      ++.+.++.++|..+...|++++|+.+|++++++        +|....++.++|.+|...|++++|+..+++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            456778899999999999999999999999987        45667889999999999999999999999999997763 


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                        .......+.++.++|.++...|++++|+++|++++..
T Consensus        76 --~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 --RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             --TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence              4455667788999999999999999999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.46  E-value=3.5e-12  Score=100.20  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      ++.+.++.++|..+...|++++|+.+|++++++        +|....++.++|.+|..+|++++|+..+++++++.... 
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence            356778899999999999999999999999998        56678899999999999999999999999999987654 


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....+..+.++.++|.++...|++++|+++|++++..
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2334456789999999999999999999999999986

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.46  E-value=3.6e-12  Score=112.21  Aligned_cols=209  Identities=12%  Similarity=0.020  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSL-------GSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                      ..++..|..+ ..+++..|...|.+++.+        +|....+|..+       +.++...++..+++..+.+.+.+..
T Consensus         8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p   78 (282)
T 4f3v_A            8 ASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISM   78 (282)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCG
T ss_pred             HHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            3445556565 589999999999999998        78889999999       8999999999999999988887543


Q ss_pred             HHcCCCCc-------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH
Q 008016          319 KVYGENDG-------------RVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI  385 (581)
Q Consensus       319 ~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~  385 (581)
                      ..++....             ........++.++...|++++|.+.|..++..       +   +... ..+.+|.++..
T Consensus        79 ~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-------~---p~~~-~~~~~a~l~~~  147 (282)
T 4f3v_A           79 STLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-------G---SEHL-VAWMKAVVYGA  147 (282)
T ss_dssp             GGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-------T---CHHH-HHHHHHHHHHH
T ss_pred             hhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------C---CchH-HHHHHHHHHHH
Confidence            33221111             12445667888999999999999999876532       2   2223 66889999999


Q ss_pred             cCChHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHH
Q 008016          386 VGRGQEGRELLEECLLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHL  463 (581)
Q Consensus       386 ~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~l  463 (581)
                      .+++++|+..++++...       .++. ...+++.+|.++...|++++|+.+|++++.      ++..|. ...+.+.+
T Consensus       148 ~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~  214 (282)
T 4f3v_A          148 AERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYL  214 (282)
T ss_dssp             TTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHH
Confidence            99999999999865432       1333 245889999999999999999999999874      222254 66788999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHH
Q 008016          464 GITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       464 a~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      |.++..+|+.++|...|++++...
T Consensus       215 glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          215 AMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC
Confidence            999999999999999999998853

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=3.3e-12  Score=103.00  Aligned_cols=103  Identities=9%  Similarity=0.066  Sum_probs=95.0

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      -+|....+++.+|.++...|++++|+..|++++.+        +|....++.++|.++...|++++|+..|++++++   
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---   99 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---   99 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence            35778899999999999999999999999999998        6777889999999999999999999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                           +|....++.++|.+|...|++++|+..|++++++
T Consensus       100 -----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 -----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             -----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                 3455678999999999999999999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=1.1e-12  Score=132.87  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=118.6

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 008016          258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (581)
Q Consensus       258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (581)
                      .|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.        +|....++.++|.
T Consensus         2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR   65 (568)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence            47899999999999887        5566789999999999999999999999999975        4556788999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 008016          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (581)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (581)
                      +|...|++++|+.+++++++.       .++.   ...+.++|.++...|++++|+..++++++..        |....+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~  127 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDA-------APEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYI  127 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhc-------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHH
Confidence            999999999999999999987       2333   4567899999999999999999999999872        344568


Q ss_pred             HHHHHHHHHHc---cCHHHHHHHHHHHHHH
Q 008016          418 LLNLAASYSRS---KNFVEAERLLRICLDI  444 (581)
Q Consensus       418 ~~~la~~~~~~---g~~~~A~~~~~~al~~  444 (581)
                      +.++|.++...   |++++|...++++++.
T Consensus       128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          128 TAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            89999999999   9999999999999985

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.45  E-value=6.5e-10  Score=112.18  Aligned_cols=398  Identities=11%  Similarity=0.071  Sum_probs=246.0

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHhhcC
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD---LKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~  196 (581)
                      .+...+......++++.+...|+.++..          .|.....+...+..-...|+   ++.+..+|++++...    
T Consensus        68 ~W~~yi~~~~~~~~~~~aR~vyEraL~~----------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~----  133 (679)
T 4e6h_A           68 LYVKLLKHHVSLKQWKQVYETFDKLHDR----------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKE----  133 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSS----
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhc----
Confidence            3555556666788999999999999987          66667777777887888888   999999999987653    


Q ss_pred             CCcchHHHHHHHHHHHHHhccCH----HHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---------hcC
Q 008016          197 DDEPLLDAILLHMGSMYSTLENY----EKS----MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG---------SIG  259 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~----~~A----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---------~~g  259 (581)
                      ..+|.. .+|..........++.    +++    ...|++|+..... ...++..   +|........         .++
T Consensus       134 ~~~~sv-~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~-~d~~s~~---iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          134 LGNNDL-SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI-FEPKSIQ---FWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             SCCCCH-HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT-TCSSCHH---HHHHHHHHHHTCCCCSHHHHHH
T ss_pred             CCCCCH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc-ccccchH---HHHHHHHHHHhccccCcHHHHh
Confidence            111222 2344333333333433    333    3566666653211 0112222   2222222111         223


Q ss_pred             CHHHHHHHHHHHHHH--------------HHHhcCCCC------------------------------------------
Q 008016          260 RAKKAVEIYHRVITI--------------LELNRGTES------------------------------------------  283 (581)
Q Consensus       260 ~~~~A~~~~~~al~~--------------~~~~~~~~~------------------------------------------  283 (581)
                      +.+.+..+|++++.+              +++..+...                                          
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~  288 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE  288 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence            344555555555431              000000000                                          


Q ss_pred             ----------hhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHH
Q 008016          284 ----------ADLVLPLFSLGSLFIKEG-------KAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  346 (581)
Q Consensus       284 ----------~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  346 (581)
                                ......|......-...+       ..+.....|++++..        .|.....|...+..+...|+.+
T Consensus       289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~  360 (679)
T 4e6h_A          289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDS  360 (679)
T ss_dssp             TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCT
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHH
Confidence                      000111111111111110       012233455555554        2345567788888888899999


Q ss_pred             HHH-HHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc------CCCC--------
Q 008016          347 EAV-ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYK------GKEH--------  411 (581)
Q Consensus       347 ~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~--------  411 (581)
                      +|. ..|++++..+       |..   ..++...+.+....|++++|..+|++++.......      .+..        
T Consensus       361 ~a~r~il~rAi~~~-------P~s---~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~  430 (679)
T 4e6h_A          361 TVITKYLKLGQQCI-------PNS---AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK  430 (679)
T ss_dssp             THHHHHHHHHHHHC-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-------CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence            997 9999998752       222   34567788899999999999999999998642111      0110        


Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHH
Q 008016          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~~~~  490 (581)
                      .....++...+.+..+.|+.+.|..+|.+|++..       .+.....+...+.+....| +.+.|..+|+.+++.+   
T Consensus       431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~---  500 (679)
T 4e6h_A          431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF---  500 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---
Confidence            1244577788888888999999999999998731       1112345556666666655 4899999999999876   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHH
Q 008016          491 FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSN  570 (581)
Q Consensus       491 ~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  570 (581)
                        ++.+   ..+...+......|+.+ .|..+|++++...     +........+......-...|+.+.+..+.+++..
T Consensus       501 --p~~~---~~w~~y~~fe~~~~~~~-~AR~lferal~~~-----~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          501 --ATDG---EYINKYLDFLIYVNEES-QVKSLFESSIDKI-----SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             --TTCH---HHHHHHHHHHHHHTCHH-HHHHHHHHHTTTS-----SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             --CCch---HHHHHHHHHHHhCCCHH-HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              4444   34556677778889988 9999999988632     11125567788888888999999999999999998


Q ss_pred             HHHHH
Q 008016          571 LRMKY  575 (581)
Q Consensus       571 l~~~~  575 (581)
                      ..++-
T Consensus       570 ~~P~~  574 (679)
T 4e6h_A          570 KFPEV  574 (679)
T ss_dssp             HSTTC
T ss_pred             hCCCC
Confidence            87653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.43  E-value=1.6e-12  Score=131.53  Aligned_cols=153  Identities=11%  Similarity=0.022  Sum_probs=120.0

Q ss_pred             cCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 008016          131 MGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG  210 (581)
Q Consensus       131 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  210 (581)
                      .|++++|+..|+++++.          .|....++..+|.++...|++++|+..++++++..       |....++..+|
T Consensus         2 ~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg   64 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLG   64 (568)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHH
Confidence            47899999999999876          67778899999999999999999999999988764       44466789999


Q ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 008016          211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPL  290 (581)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  290 (581)
                      .++...|++++|+.+++++++..        |....++..+|.++...|++++|+..++++++.        .|....++
T Consensus        65 ~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~  128 (568)
T 2vsy_A           65 RVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYIT  128 (568)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            99999999999999999999862        223678999999999999999999999999998        45567889


Q ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHH
Q 008016          291 FSLGSLFIKE---GKAVDAESVFSRILKI  316 (581)
Q Consensus       291 ~~la~~~~~~---g~~~~A~~~~~~al~~  316 (581)
                      ..+|.++...   |++++|...++++++.
T Consensus       129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999999999   9999999999999886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.40  E-value=6.6e-12  Score=101.26  Aligned_cols=104  Identities=11%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      .-+|....+++.+|.++...|++++|+..|++++.+.        |....++.++|.++...|++++|+..|++++.+  
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--   99 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--   99 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence            4558888899999999999999999999999999862        334678999999999999999999999999998  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                            .|....+++++|.+|...|++++|+..|++++++
T Consensus       100 ------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          100 ------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             ------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                  5666788999999999999999999999999987

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.39  E-value=1.1e-09  Score=110.58  Aligned_cols=380  Identities=11%  Similarity=0.073  Sum_probs=235.0

Q ss_pred             ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 008016          133 NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM  212 (581)
Q Consensus       133 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  212 (581)
                      ...+-+..|++.+..          +|.+...+..++......++++.+...|++++...       |.....|......
T Consensus        47 ~~~d~i~~lE~~l~~----------np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-------P~~~~lW~~Yi~~  109 (679)
T 4e6h_A           47 DESDVIGKLNDMIEE----------QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-------PLMANIWCMRLSL  109 (679)
T ss_dssp             CCSCHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----------CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-------CCCHHHHHHHHHH
Confidence            345566677777766          78888899999999999999999999999998886       4445566667777


Q ss_pred             HHhccC---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCH----HHHH----HHHHHHHHHHHHhcCC
Q 008016          213 YSTLEN---YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA----KKAV----EIYHRVITILELNRGT  281 (581)
Q Consensus       213 ~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~  281 (581)
                      -...|+   ++.+..+|++++....   .+.+   ...|..........++.    +++.    ..|++|+...    |.
T Consensus       110 E~~~~~~~~~~~v~~lfeRal~~~~---~~~s---v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v----G~  179 (679)
T 4e6h_A          110 EFDKMEELDAAVIEPVLARCLSKEL---GNND---LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC----AI  179 (679)
T ss_dssp             HHTC--CCCHHHHHHHHHHHTCSSS---CCCC---HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT----TT
T ss_pred             HHhhCCcchHHHHHHHHHHHHHhcC---CCCC---HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh----Cc
Confidence            778888   9999999999987420   0122   23444444433333332    3333    5666666543    22


Q ss_pred             CChhhHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHH--------------HHHHcCCCC-------------
Q 008016          282 ESADLVLPLFSLGSLFI---------KEGKAVDAESVFSRILKI--------------YTKVYGEND-------------  325 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~--------------~~~~~~~~~-------------  325 (581)
                      -++....+|........         .+++.+.+..+|++++.+              +++..+...             
T Consensus       180 ~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~  259 (679)
T 4e6h_A          180 FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYM  259 (679)
T ss_dssp             TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHH
Confidence            01222223332222211         233455556666665531              000000000             


Q ss_pred             --------------------------------c-------hHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHH
Q 008016          326 --------------------------------G-------RVGMAMCSLAHAKCANG-------NAEEAVELYKKALRVI  359 (581)
Q Consensus       326 --------------------------------~-------~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~  359 (581)
                                                      |       .....|......-...+       ..+.....|++++..+
T Consensus       260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~  339 (679)
T 4e6h_A          260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV  339 (679)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc
Confidence                                            0       01111111111111110       0122344566665542


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGR-ELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                             +.   ...+|...+..+...|+.++|. .+|++++...        |.....+...+.+....|++++|..+|
T Consensus       340 -------p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~~~~~e~aR~iy  401 (679)
T 4e6h_A          340 -------CF---APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYELNTKIPEIETTI  401 (679)
T ss_dssp             -------TT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------CC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                   22   2456678888899999999997 9999998653        333456778899999999999999999


Q ss_pred             HHHHHHHHHhcC---CCCc-----------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 008016          439 RICLDIMTKTVG---PDDQ-----------SISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  504 (581)
Q Consensus       439 ~~al~~~~~~~~---~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  504 (581)
                      ++++........   +..|           ....++...+......|+.+.|..+|.+|++..    ++..   ...+..
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~~~~---~~lyi~  474 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----KLVT---PDIYLE  474 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----GGSC---THHHHH
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCCC---hHHHHH
Confidence            999986421110   0012           234467777888888999999999999997641    1111   244556


Q ss_pred             HHHHHHHcCC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          505 LVSIQTRLGE-DDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       505 la~~~~~~g~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      .+.+....++ .+ .|...|+++++.+     +..+   ..+...+......|+.+.|..+|++++...+
T Consensus       475 ~A~lE~~~~~d~e-~Ar~ife~~Lk~~-----p~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          475 NAYIEYHISKDTK-TACKVLELGLKYF-----ATDG---EYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHHTTTSCCH-HHHHHHHHHHHHH-----TTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHhCCCHH-HHHHHHHHHHHHC-----CCch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            6666666665 77 9999999999865     2334   3455667788889999999999999987654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=1.4e-12  Score=121.85  Aligned_cols=164  Identities=16%  Similarity=0.171  Sum_probs=133.0

Q ss_pred             HcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHH
Q 008016          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVT  246 (581)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~  246 (581)
                      ..+++++|+..++++....       |..+.++..+|.++...|++++|+..|++++.+.......       ..+....
T Consensus       125 ~L~~~~~A~~~~~~a~~~~-------p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEK-------LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHH-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence            3456666766665544432       6777889999999999999999999999999875321000       0123468


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      ++.++|.+|...|++++|+..+++++++        .|....+++.+|.+|...|++++|+..|++++++        .|
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P  261 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YP  261 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CC
Confidence            8999999999999999999999999998        5667889999999999999999999999999987        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEA-VELYKKALRVIK  360 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~  360 (581)
                      ....++..++.++...|++++| ...|++++....
T Consensus       262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5567889999999999999999 557777776543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=1.2e-12  Score=122.18  Aligned_cols=162  Identities=10%  Similarity=0.074  Sum_probs=134.0

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--------Ccch
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL  201 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~  201 (581)
                      ..+++++|+..++++++.          .|..+.++..+|.++...|++++|+..|++++.+......        ..+.
T Consensus       125 ~L~~~~~A~~~~~~a~~~----------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  194 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL  194 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHH
Confidence            345677788877777765          6778899999999999999999999999999988632110        0123


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      ...++.++|.++...|++++|+..|++++.+.        |....+++.+|.+|...|++++|+..|++++++       
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------  259 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-------  259 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence            35788999999999999999999999999862        234678999999999999999999999999998       


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDA-ESVFSRILKIY  317 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~  317 (581)
                       .|....++..++.++...|++++| ...|.+++...
T Consensus       260 -~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          260 -YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             556678899999999999999999 45677766554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.38  E-value=1e-11  Score=100.51  Aligned_cols=104  Identities=16%  Similarity=-0.003  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      ..|.....++.+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+   
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---   84 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---   84 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            34777889999999999999999999999999987        5667888999999999999999999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                           +|....++.++|.++...|++++|+..|++++++.
T Consensus        85 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           85 -----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             -----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence                 34455778999999999999999999999999984

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.38  E-value=3.9e-10  Score=102.47  Aligned_cols=232  Identities=9%  Similarity=-0.002  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHcCChh-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 008016          120 ELFNEVKSMIMMGNKN-DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLLDMM  188 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~  188 (581)
                      .+........+.|+++ +|+.++.+++..          +|....+++..+.+....|.          +++++.+++.+
T Consensus        31 ~~~~~~~~~~~~~e~s~eaL~~t~~~L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~  100 (331)
T 3dss_A           31 SATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC  100 (331)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            3555556667888887 789999999977          88889999999988877765          56666677666


Q ss_pred             HHHHhhcCCCcchHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC-HHHHH
Q 008016          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGR-AKKAV  265 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~  265 (581)
                      +...       |....+|+..+.++...|+  +++++.++.++++.        +|....+|...+.+....|. +++++
T Consensus       101 L~~~-------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel  165 (331)
T 3dss_A          101 LRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEEL  165 (331)
T ss_dssp             HHHC-------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhC-------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            5543       6666789999999999884  89999999999985        24457789999999999998 69999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      +++.++++.        +|....+++..+.++...              +.++++++++.+++..        +|....+
T Consensus       166 ~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--------~P~d~Sa  229 (331)
T 3dss_A          166 AFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSA  229 (331)
T ss_dssp             HHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--------STTCHHH
T ss_pred             HHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--------CCCCHHH
Confidence            999999987        677788999999988877              4588899999999886        4566677


Q ss_pred             HHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH---HHcCChHHHHHHHH
Q 008016          332 MCSLAHAKCAN-----------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL---HIVGRGQEGRELLE  397 (581)
Q Consensus       332 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~  397 (581)
                      ++.+..++...           +.++++++.+++++++       .|+....   +..++.+.   ...|..++...++.
T Consensus       230 W~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-------~pd~~w~---l~~~~~~~~~~~~~~~~~~~~~~l~  299 (331)
T 3dss_A          230 WFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-------EPENKWC---LLTIILLMRALDPLLYEKETLQYFS  299 (331)
T ss_dssp             HHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-------CTTCHHH---HHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-------CcccchH---HHHHHHHHHhhcccccHHHHHHHHH
Confidence            76666555554           3577888888888876       4554332   22233222   23567778888888


Q ss_pred             HHHHH
Q 008016          398 ECLLI  402 (581)
Q Consensus       398 ~al~~  402 (581)
                      +.+++
T Consensus       300 ~l~~~  304 (331)
T 3dss_A          300 TLKAV  304 (331)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88776

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=3.7e-11  Score=95.76  Aligned_cols=131  Identities=21%  Similarity=0.355  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          246 TSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       246 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      .++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|..++++++..        .
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence            35778999999999999999999999886        3445678889999999999999999999999875        2


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      |....++..+|.++...|++++|+.++++++..       .+..   ..++..+|.++...|++++|..++++++..
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            334567889999999999999999999999886       2222   345678999999999999999999998875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.37  E-value=1.3e-11  Score=99.91  Aligned_cols=109  Identities=14%  Similarity=-0.011  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Q 008016          370 SIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTV  449 (581)
Q Consensus       370 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  449 (581)
                      +.....+..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+     
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   84 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-----   84 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            444667789999999999999999999999886        3445678899999999999999999999999986     


Q ss_pred             CCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHH
Q 008016          450 GPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVG  499 (581)
Q Consensus       450 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  499 (581)
                         +|....++..+|.++...|++++|+..|++++++.     |++|...
T Consensus        85 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~  126 (148)
T 2vgx_A           85 ---DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI-----ANXPEFX  126 (148)
T ss_dssp             ---STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGH
T ss_pred             ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcch
Confidence               45556788999999999999999999999999876     5666543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.37  E-value=3.3e-11  Score=96.01  Aligned_cols=130  Identities=22%  Similarity=0.423  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      +++.+|.++...|++++|+.++++++...     ++   ...++..+|.++...|++++|+.++++++..        .|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~   66 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DP   66 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-----Cc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CC
Confidence            57889999999999999999999998752     22   2567888999999999999999999999887        34


Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....++..+|.++...|++++|...+++++..        .|....++..+|.++...|++++|..++++++..
T Consensus        67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            45678889999999999999999999999876        2334567888999999999999999999999876

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.36  E-value=7.4e-11  Score=97.93  Aligned_cols=140  Identities=12%  Similarity=0.042  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ..+..+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            35677899999999999999999999999987        4556788999999999999999999999999986      


Q ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                        .|....++..+|.++...|++++|+.++++++..       .|..... .....++..+...|++++|+..+.++..+
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKDA-KMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCCHHH-HHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence              3445678899999999999999999999999987       2333332 23355666688899999999999998887


Q ss_pred             HHHh
Q 008016          403 TEKY  406 (581)
Q Consensus       403 ~~~~  406 (581)
                      ....
T Consensus       147 ~~~~  150 (166)
T 1a17_A          147 VDSL  150 (166)
T ss_dssp             HHHC
T ss_pred             hccc
Confidence            6543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=7.8e-11  Score=92.59  Aligned_cols=122  Identities=12%  Similarity=0.038  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ..+..+..+|..+...|++++|+..|++++...        |....++.++|.++...|++++|+..+++++++      
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------   67 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            345678999999999999999999999999863        223678999999999999999999999999998      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (581)
                        .|....++..+|.++...|++++|+..|++++++....  .+.|....+...++.+..
T Consensus        68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV--NNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HTTTTHHHHHHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc--CCchhHHHHHHHHHHHHH
Confidence              56668899999999999999999999999999986443  223455566666665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=8.8e-11  Score=92.27  Aligned_cols=102  Identities=15%  Similarity=-0.019  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      .+..+..+|..+...|++++|+..|+++++.        .|....++.++|.++...|++++|+..+++++++       
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-------   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            4677889999999999999999999999998        5666789999999999999999999999999987       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                       +|....++..+|.++...|++++|+..+++++++..+
T Consensus        68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  104 (126)
T 3upv_A           68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE  104 (126)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence             4555788999999999999999999999999998643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.32  E-value=9.6e-11  Score=97.24  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                      ..+..+..+|..+...|++++|+..|++++...        |....++..+|.++...|++++|+..++++++.      
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   76 (166)
T 1a17_A           11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------   76 (166)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence            345678899999999999999999999999862        223678899999999999999999999999987      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                        .|....++..+|.++...|++++|..+++++++..     ++++ .......++..+...|++++|+..+.++..+..
T Consensus        77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  148 (166)
T 1a17_A           77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD  148 (166)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence              45567889999999999999999999999999862     2222 223335566668889999999999999988876


Q ss_pred             h
Q 008016          361 D  361 (581)
Q Consensus       361 ~  361 (581)
                      .
T Consensus       149 ~  149 (166)
T 1a17_A          149 S  149 (166)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.30  E-value=1.3e-10  Score=92.12  Aligned_cols=117  Identities=18%  Similarity=0.086  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT----ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      .+..+...|..+...|+|++|+..|++++++.......    ..|....+|.++|.++..+|++++|+..++++++++.+
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            35668899999999999999999999999996431110    01224559999999999999999999999999998665


Q ss_pred             HcCCCCchHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          320 VYGENDGRVGMAM----CSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       320 ~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      . ++-+|....+|    +++|.++..+|++++|+..|++++++...
T Consensus        90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~  134 (159)
T 2hr2_A           90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  134 (159)
T ss_dssp             H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            5 34567788888    99999999999999999999999999765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.30  E-value=2.2e-11  Score=106.00  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      ..++.+|..+...|++++|+..|++++.       +    ...++..+|.++...|++++|+..+++++..        .
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~   67 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------D   67 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence            3467899999999999999999998842       1    2568999999999999999999999999988        4


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--------CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY--------GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKA  355 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  355 (581)
                      |....++..+|.++...|++++|+..|+++++......        ....+....++.++|.++...|++++|+..++++
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            56678999999999999999999999999998632110        0023456789999999999999999999999999


Q ss_pred             HHH
Q 008016          356 LRV  358 (581)
Q Consensus       356 l~~  358 (581)
                      +++
T Consensus       148 l~~  150 (213)
T 1hh8_A          148 TSM  150 (213)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            886

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.29  E-value=7.9e-12  Score=113.58  Aligned_cols=194  Identities=12%  Similarity=0.022  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      +..+..+|..+...|++++|+..|++++..        .|....++.++|.+|...|++++|+..+++++++        
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence            467888999999999999999999999998        5566789999999999999999999999999875        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      +|....++.++|.++...|++++|+..|++++++.....  ..-...   +...+  ..      .++..+..    ...
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~~---~~~~~--~~------~~~~~~~~----~~~  130 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR--LNFGDD---IPSAL--RI------AKKKRWNS----IEE  130 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCCCSH---HHHHH--HH------HHHHHHHH----HHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--hhHHHH---HHHHH--HH------HHHHHHHH----HHH
Confidence            456678899999999999999999999999999866420  000111   11111  11      11111111    111


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHc-CChHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHL-NRDKEAEKLVLEA  483 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a  483 (581)
                       ......+..   ...++.++  .|++++|++.++++++.        +|........++.++... +.+++|.++|.++
T Consensus       131 -~~~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a  196 (281)
T 2c2l_A          131 -RRIHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQV  196 (281)
T ss_dssp             -TCCCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -HHHhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence             112233333   33344443  68999999999988773        344445556666666665 7788898888887


Q ss_pred             HH
Q 008016          484 LY  485 (581)
Q Consensus       484 ~~  485 (581)
                      .+
T Consensus       197 ~~  198 (281)
T 2c2l_A          197 DE  198 (281)
T ss_dssp             SC
T ss_pred             hc
Confidence            55

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.29  E-value=6.2e-11  Score=103.11  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ...++.+|..+...|++++|+..|++++.       +    ...++..+|.++...|++++|+..++++++.        
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------   66 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------   66 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence            45578899999999999999999998741       1    3568999999999999999999999999986        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc------CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY------MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                      .|....++.++|.++...|++++|+..++++++.......      .....+....++.++|.++...|++++|+..+++
T Consensus        67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            3455688999999999999999999999999986432100      0002234457789999999999999999999999


Q ss_pred             HHHH
Q 008016          399 CLLI  402 (581)
Q Consensus       399 al~~  402 (581)
                      ++.+
T Consensus       147 al~~  150 (213)
T 1hh8_A          147 ATSM  150 (213)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.27  E-value=1.3e-11  Score=105.99  Aligned_cols=166  Identities=12%  Similarity=-0.001  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC
Q 008016          290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD  369 (581)
Q Consensus       290 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  369 (581)
                      ....+......|++++|.+.+......        .+..+..+..+|..+...|++++|+.+|++++.+....    ++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~   74 (198)
T 2fbn_A            7 HHHHSSGRENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT----EEW   74 (198)
T ss_dssp             ---------------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC----TTC
T ss_pred             ccchhhhhhhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc----ccc
Confidence            344566667778888887777655432        23467788899999999999999999999999864321    111


Q ss_pred             h----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          370 S----------IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       370 ~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                      .          ....++.++|.++...|++++|+.++++++.+        .|....++..+|.++...|++++|+..|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  146 (198)
T 2fbn_A           75 DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLY  146 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            0          11367789999999999999999999999987        24456788999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH-HHHHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE-KLVLEA  483 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  483 (581)
                      +++.+        .|....++..++.++...++..++. ..+.+.
T Consensus       147 ~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          147 KAASL--------NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99985        4555678888999988888777766 334333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.26  E-value=1.3e-11  Score=106.03  Aligned_cols=160  Identities=12%  Similarity=0.060  Sum_probs=113.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC------
Q 008016          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT------  240 (581)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------  240 (581)
                      ..+......|+++++.+.++....       ..+..+..+..+|..+...|++++|+..|++++.+........      
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~   81 (198)
T 2fbn_A            9 HHSSGRENLYFQGAKKSIYDYTDE-------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD   81 (198)
T ss_dssp             -------------CCCSGGGCCHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH
T ss_pred             chhhhhhhhhhccccCchhhCCHH-------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            334455556777777666654222       2245566788999999999999999999999998643210000      


Q ss_pred             --CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          241 --SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       241 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                        ......++.++|.++...|++++|+.++++++++        .|....++..+|.++...|++++|+..|++++++  
T Consensus        82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--  151 (198)
T 2fbn_A           82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--  151 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--
Confidence              0012478999999999999999999999999998        5566789999999999999999999999999987  


Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Q 008016          319 KVYGENDGRVGMAMCSLAHAKCANGNAEEAV  349 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  349 (581)
                            .|....++..++.++...++..++.
T Consensus       152 ------~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          152 ------NPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             ------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             ------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                  3455677888898888888777766

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.26  E-value=1.1e-10  Score=92.65  Aligned_cols=124  Identities=14%  Similarity=0.086  Sum_probs=105.9

Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      ...+.....+..+|..+...|++++|+..+++++...        |....++..+|.++...|++++|+.+++++++.  
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--   79 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--   79 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence            4456777889999999999999999999999998742        223678999999999999999999999999987  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN  344 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  344 (581)
                            .|....++..+|.++...|++++|+.+++++++.        .|....++..++.++...|+
T Consensus        80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred             ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence                  4556788999999999999999999999999986        34555678888888877664

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.25  E-value=1.8e-10  Score=91.27  Aligned_cols=120  Identities=8%  Similarity=0.027  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhh
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAG--NKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDS  194 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  194 (581)
                      ....+...|..++..|++++|+..|+++++..+......  ...|..+.++.++|.++..+|++++|+..+++++.++..
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            345588999999999999999999999999843310000  112335669999999999999999999999999998666


Q ss_pred             cCCCcchHHHHH----HHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Q 008016          195 LKDDEPLLDAIL----LHMGSMYSTLENYEKSMLVYQRVINVLESR  236 (581)
Q Consensus       195 ~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  236 (581)
                      .++-.|....+|    ++.|.++...|++++|+..|++++++....
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            566678888888    999999999999999999999999987653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.25  E-value=3.2e-10  Score=89.59  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=105.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      ..+.....+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..++++++.   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            34567888999999999999999999999999987        4455778999999999999999999999999986   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCCh
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRG  389 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  389 (581)
                           .|....++..+|.++...|++++|+.++++++..       .|+.   ...+..++.++...|++
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------~p~~---~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL-------DPDN---ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------STTC---HHHHHHHHHHHHHHTTC
T ss_pred             -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------Cccc---hHHHHHHHHHHHHHhcC
Confidence                 3344678899999999999999999999999987       2333   34567899999888875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.25  E-value=1.5e-10  Score=91.98  Aligned_cols=123  Identities=12%  Similarity=-0.020  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      ..+.....+..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.   
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---   79 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---   79 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence            34566888999999999999999999999999876        4555788999999999999999999999999986   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCC
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGR  388 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  388 (581)
                           .|....++..+|.++...|++++|+.++++++...       +..   ..++..++.++...|+
T Consensus        80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~---~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-------SSC---KEAADGYQRCMMAQYN  133 (133)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------GGG---THHHHHHHHHHHHHTC
T ss_pred             -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------CCc---hHHHHHHHHHHHHhcC
Confidence                 34456788999999999999999999999999872       222   3456788888887764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.24  E-value=4.3e-10  Score=90.36  Aligned_cols=105  Identities=14%  Similarity=0.015  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      ..|.....++.+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+   
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---   81 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---   81 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence            35677888999999999999999999999999987        5667888999999999999999999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                           +|....++.++|.++...|++++|+..|++++++..
T Consensus        82 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           82 -----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             -----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             -----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                 344456788999999999999999999999999854

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.24  E-value=4.6e-10  Score=90.16  Aligned_cols=103  Identities=12%  Similarity=-0.013  Sum_probs=90.3

Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      .+.....+..+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..|++++.+    
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----   81 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM----   81 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence            3444567789999999999999999999999886        3445678899999999999999999999999985    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                          +|....++..+|.++...|++++|+..|++++++.
T Consensus        82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                45556788999999999999999999999999876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.24  E-value=2e-10  Score=94.85  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=95.4

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC---CC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG---KT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (581)
                      ...+..+...|..++..|++++|+..|.+++.+......   +.       .+....++.++|.+|...|++++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            455677899999999999999999999999998654321   11       34567889999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          270 RVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       270 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      +++.+        +|....+++.+|.+|...|++++|+..|++++++
T Consensus        88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            99998        5677889999999999999999999999999987

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.23  E-value=8.8e-09  Score=93.60  Aligned_cols=236  Identities=11%  Similarity=-0.020  Sum_probs=171.2

Q ss_pred             HHcCChH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHHHHHHcCCCC
Q 008016          173 VYIGDLK-FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLEN----------YEKSMLVYQRVINVLESRYGKTS  241 (581)
Q Consensus       173 ~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~  241 (581)
                      ...|+++ +|+.++..++.+.       |....+|+..+.+....|.          +++++.++..++..        +
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-------P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------N  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------C
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-------chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------C
Confidence            4567776 7888888876654       6666778888888877665          57777888777764        2


Q ss_pred             HHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 008016          242 ILLVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYT  318 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~  318 (581)
                      |....+|...+.++...|  .+++++.++.++++.        +|....++...+.+....|. ++++++++.++++.  
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--  174 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--  174 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence            344778999999999988  489999999999987        67778899999999999999 69999999999976  


Q ss_pred             HHcCCCCchHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH
Q 008016          319 KVYGENDGRVGMAMCSLAHAKCAN--------------GNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH  384 (581)
Q Consensus       319 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~  384 (581)
                            +|....++++.+.++...              +.++++++++.+++.+       .|++.   .+++.+..++.
T Consensus       175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-------~P~d~---SaW~Y~r~ll~  238 (331)
T 3dss_A          175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-------DPNDQ---SAWFYHRWLLG  238 (331)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-------STTCH---HHHHHHHHHHH
T ss_pred             ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-------CCCCH---HHHHHHHHHHH
Confidence                  567778899999888776              4588999999999887       34443   33444444444


Q ss_pred             Hc-----------CChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHhcC
Q 008016          385 IV-----------GRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASY---SRSKNFVEAERLLRICLDIMTKTVG  450 (581)
Q Consensus       385 ~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~  450 (581)
                      ..           +.++++++.+++++++.     ++.   ..++..++.+.   ...|..++...++.+.+++      
T Consensus       239 ~~~~~~~~~~~~~~~l~~el~~~~elle~~-----pd~---~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------  304 (331)
T 3dss_A          239 AGSGRCELSVEKSTVLQSELESCKELQELE-----PEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV------  304 (331)
T ss_dssp             SSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH------
T ss_pred             hccCccccchHHHHHHHHHHHHHHHHHhhC-----ccc---chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh------
Confidence            33           34677777777777662     333   23333333322   2357788888899888875      


Q ss_pred             CCCcchHHHHHHHHH
Q 008016          451 PDDQSISFPMLHLGI  465 (581)
Q Consensus       451 ~~~~~~~~~~~~la~  465 (581)
                        +|....-|..++.
T Consensus       305 --Dp~r~~~y~d~~~  317 (331)
T 3dss_A          305 --DPMRAAYLDDLRS  317 (331)
T ss_dssp             --CGGGHHHHHHHHH
T ss_pred             --CcchhhHHHHHHH
Confidence              5665555555543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.23  E-value=2.3e-10  Score=90.42  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=105.9

Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      ..+.....+..+|..+...|++++|+..+++++...     ++   ...++..+|.++...|++++|+..+++++..   
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---   75 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICI---   75 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence            446677788999999999999999999999999862     22   3668899999999999999999999999987   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNA  345 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  345 (581)
                           .|....++..+|.++...|++++|..+++++++.        .|....++..++.++...|++
T Consensus        76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred             -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence                 4455778999999999999999999999999986        334456788899999888765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.21  E-value=3.2e-10  Score=93.79  Aligned_cols=103  Identities=16%  Similarity=0.148  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      .+..+..+..+|.++...|++++|+..|++++++        .|....++.++|.+|...|++++|+..|++++++    
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----   74 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV----   74 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence            3456788999999999999999999999999998        5666889999999999999999999999999987    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                          +|....++.++|.++...|++++|+..|++++++.
T Consensus        75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                45567889999999999999999999999999984

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=4.3e-09  Score=96.02  Aligned_cols=243  Identities=9%  Similarity=-0.077  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHc
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEG-KAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~  321 (581)
                      ....++..+..+....+..++|+..+.+++.+        +|....+++..+.++...| .+++++.++.+++..     
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----  118 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence            44555555666666677778999999999998        7778899999999999999 599999999999864     


Q ss_pred             CCCCchHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH--------H
Q 008016          322 GENDGRVGMAMCSLAHAKCAN-G-NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ--------E  391 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~  391 (581)
                         +|....+++..+.++... + ++++++.++.++++.       .+.+   ..++...+.++...|.++        +
T Consensus       119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~-------dpkN---y~AW~~R~wvl~~l~~~~~~~~~~~~e  185 (349)
T 3q7a_A          119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP-------DPKN---YHTWAYLHWLYSHFSTLGRISEAQWGS  185 (349)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS-------CTTC---HHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHhccccccchhhHHH
Confidence               677788999999999887 7 899999999998864       2222   456778888888888777        8


Q ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          392 GRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN-------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       392 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      ++++++++++.        ++....++...+.++...++       ++++++++++++.+        +|....++..+.
T Consensus       186 ELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr  249 (349)
T 3q7a_A          186 ELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLR  249 (349)
T ss_dssp             HHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence            88888888876        45566789999999988887       78999999999885        577777888888


Q ss_pred             HHHHHcCChHH------------HHH-HHHHHHHHHHHHcCCC-----ChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016          465 ITLYHLNRDKE------------AEK-LVLEALYIREIAFGKD-----SLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  526 (581)
Q Consensus       465 ~~~~~~g~~~~------------A~~-~~~~a~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a  526 (581)
                      .++...|+...            .+. .+....+......+..     .+....++..|+.+|...|+.+ +|.++++..
T Consensus       250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~-~a~~~~~~l  328 (349)
T 3q7a_A          250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD-DAAKVFEKL  328 (349)
T ss_dssp             HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred             HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHH
Confidence            88888776410            000 0111111121122211     1345578899999999999888 888888776


Q ss_pred             HH
Q 008016          527 LR  528 (581)
Q Consensus       527 ~~  528 (581)
                      .+
T Consensus       329 ~~  330 (349)
T 3q7a_A          329 SS  330 (349)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.21  E-value=4.4e-09  Score=95.97  Aligned_cols=258  Identities=11%  Similarity=-0.005  Sum_probs=184.5

Q ss_pred             hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHc
Q 008016          159 IEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLE-NYEKSMLVYQRVINVLESRY  237 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~  237 (581)
                      ++...++..+.......+..++|+.++++++.+.       |....+|+..+.++...| .+++++.++.+++..     
T Consensus        51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~n-------P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----  118 (349)
T 3q7a_A           51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMN-------PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----  118 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-------chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----
Confidence            3344444444444555566678999999988775       666678899999999999 599999999999874     


Q ss_pred             CCCCHHHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHH
Q 008016          238 GKTSILLVTSLLGMAKVLGSI-G-RAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAV--------DAE  307 (581)
Q Consensus       238 ~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~  307 (581)
                         +|....+++..+.++... + ++++++.++.++++.        +|....++...+.+....|.++        +++
T Consensus       119 ---nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL  187 (349)
T 3q7a_A          119 ---NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL  187 (349)
T ss_dssp             ---TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             ---CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence               334477888899998887 7 899999999988865        6777889999999998888887        899


Q ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN-------AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (581)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (581)
                      ++++++++.        ++....+++..+.++...++       ++++++++.+++.+       .|++   ..+++.+.
T Consensus       188 e~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-------~P~n---~SaW~Ylr  249 (349)
T 3q7a_A          188 DWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-------IPHN---VSAWNYLR  249 (349)
T ss_dssp             HHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-------CTTC---HHHHHHHH
T ss_pred             HHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-------CCCC---HHHHHHHH
Confidence            999988876        56777899999999999887       78999999999887       3333   44567777


Q ss_pred             HHHHHcCChHH------------HHH-HHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 008016          381 ELLHIVGRGQE------------GRE-LLEECLLITEKYKGK-----EHPSFVTHLLNLAASYSRSKNFVEAERLLRICL  442 (581)
Q Consensus       381 ~~~~~~g~~~~------------A~~-~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (581)
                      .++...|+...            .+. .+......+....+.     ..+....++..|+.+|...|+.++|.++++...
T Consensus       250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            78887776510            000 011111122111111     113455688889999999999999999998875


Q ss_pred             HHHHHhcCCCCcchHHHHHHHH
Q 008016          443 DIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      +       .-+|.....+...+
T Consensus       330 ~-------~~dpir~~yw~~~~  344 (349)
T 3q7a_A          330 S-------EYDQMRAGYWEFRR  344 (349)
T ss_dssp             H-------TTCGGGHHHHHHHH
T ss_pred             h-------hhChHHHHHHHHHH
Confidence            4       23555555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.21  E-value=6.1e-12  Score=123.23  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      +..+..+..+|..+...|++++|+..|+++++.        .|....++.++|.+|..+|++++|+..+++++++     
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            344566778899999999999999999999998        5666889999999999999999999999999986     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHH--HHHcCChHHHHHHHH--
Q 008016          322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAEL--LHIVGRGQEGRELLE--  397 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--  397 (581)
                         +|....++.++|.+|...|++++|+..+++++++       .|+...   ++..++.+  +...|++++|++.++  
T Consensus        70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~~~~---~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-------KPHDKD---AKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------STTCTT---HHHHHHHHHHHHHHHHHCCC------C
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH---HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence               4566788999999999999999999999999987       233322   34566666  888999999999998  


Q ss_pred             ---------HHHHHHHHhcCCCChH---HHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHh
Q 008016          398 ---------ECLLITEKYKGKEHPS---FVTHLLNLAASYSRSKN--FVEAERLLRICLDIMTKT  448 (581)
Q Consensus       398 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~  448 (581)
                               +++.+.....+...+.   ....+..+...+...+.  ...+..++.++.++..+.
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e  201 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL  201 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence                     5554433333333332   22334444555555454  345555777877776653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.21  E-value=1.4e-11  Score=111.84  Aligned_cols=194  Identities=11%  Similarity=-0.044  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 008016          329 GMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKG  408 (581)
Q Consensus       329 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  408 (581)
                      +..+..+|..+...|++++|+..|++++..       .|+.   ..++.++|.++...|++++|+..+++++.+      
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~------   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-------NPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL------   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence            567888999999999999999999999987       3333   456789999999999999999999998865      


Q ss_pred             CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          409 KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIRE  488 (581)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  488 (581)
                        .|....++..+|.+|...|++++|+..|++++++.......-. .  .....+  ..      .++..+...     .
T Consensus        68 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~--~~~~~~--~~------~~~~~~~~~-----~  129 (281)
T 2c2l_A           68 --DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-D--DIPSAL--RI------AKKKRWNSI-----E  129 (281)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC-S--HHHHHH--HH------HHHHHHHHH-----H
T ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH-H--HHHHHH--HH------HHHHHHHHH-----H
Confidence              3555678999999999999999999999999987543211000 1  111111  11      111111111     1


Q ss_pred             HHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CChhhhHHHHHH
Q 008016          489 IAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKL-GRKEEKFPLKKR  567 (581)
Q Consensus       489 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~  567 (581)
                      ....+..+..   ...++.+.  .|+++ +|++.++++++.        .|+.......++.++... +++++|.++|.+
T Consensus       130 ~~~~~~~~~i---~~~l~~l~--~~~~~-~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~  195 (281)
T 2c2l_A          130 ERRIHQESEL---HSYLTRLI--AAERE-RELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQ  195 (281)
T ss_dssp             HTCCCCCCHH---HHHHHHHH--HHHHH-HHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHH---HHHHHHHH--HHHHH-HHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            1122344433   33344443  46666 777777777652        234445556666666665 778899999987


Q ss_pred             HHH
Q 008016          568 LSN  570 (581)
Q Consensus       568 a~~  570 (581)
                      +.+
T Consensus       196 a~~  198 (281)
T 2c2l_A          196 VDE  198 (281)
T ss_dssp             SSC
T ss_pred             hhc
Confidence            654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.20  E-value=2.5e-10  Score=94.42  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=93.5

Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILEL  277 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  277 (581)
                      ..+..+..+..+|.++...|++++|+.+|++++.+.        |....++..+|.+|...|++++|+..+++++++   
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---   74 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---   74 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence            446677889999999999999999999999999863        223678999999999999999999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                           .|....++..+|.+|...|++++|+..|++++++.
T Consensus        75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence                 56668899999999999999999999999999874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.20  E-value=1.6e-10  Score=97.06  Aligned_cols=122  Identities=13%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             HHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 008016          213 YSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS  292 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  292 (581)
                      +...|++++|+..+++++...     ++   ...++..+|.+|...|++++|+.+|+++++..        |....++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-----PQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-----CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence            346789999999999998852     22   35788999999999999999999999999883        445678899


Q ss_pred             HHHH-HHHcCCH--HHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          293 LGSL-FIKEGKA--VDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       293 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +|.+ +...|++  ++|+..++++++.        .|....++..+|.++...|++++|+..++++++.
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            9999 8899999  9999999999986        3455678899999999999999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.20  E-value=1.1e-11  Score=121.40  Aligned_cols=180  Identities=11%  Similarity=-0.007  Sum_probs=130.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSN  363 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  363 (581)
                      +..+..+..+|..+...|++++|+..|+++++.        +|....++.++|.+|...|++++|+..+++++++     
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-----   69 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-----   69 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence            344566778899999999999999999999987        4556789999999999999999999999999986     


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--HHHccCHHHHHHHHH--
Q 008016          364 YMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAAS--YSRSKNFVEAERLLR--  439 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~--  439 (581)
                        .|+.   ..++.++|.+|..+|++++|++.+++++++.     +++   ..++..++.+  +..+|++++|++.++  
T Consensus        70 --~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           70 --DKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             --CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             --CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence              3333   4567899999999999999999999999873     222   3356667777  888999999999999  


Q ss_pred             ---------HHHHHHHHhcCCCCcc---hHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHH
Q 008016          440 ---------ICLDIMTKTVGPDDQS---ISFPMLHLGITLYHLNRDK--EAEKLVLEALYIREI  489 (581)
Q Consensus       440 ---------~al~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~--~A~~~~~~a~~~~~~  489 (581)
                               +++++.....++..+.   ....+..+...+...+...  ++..++.++.++...
T Consensus       137 ~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~  200 (477)
T 1wao_1          137 RSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK  200 (477)
T ss_dssp             CSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             chhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence                     5555433333333332   2334445555555555544  455577777777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.20  E-value=5.5e-10  Score=92.16  Aligned_cols=128  Identities=16%  Similarity=0.097  Sum_probs=101.5

Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-CCCC-------ChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY-MSLD-------DSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                      ...+..+...|..++..|++++|+..|.+++.+...... ..+.       .+....++.++|.+|...|++++|+..++
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            456778899999999999999999999999998654311 0111       34456788999999999999999999999


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH-HHHHHHHHHHHH
Q 008016          398 ECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-FPMLHLGITLYH  469 (581)
Q Consensus       398 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~la~~~~~  469 (581)
                      +++.+        .|....++..+|.+|...|++++|+..|++++.+        +|... .+...++.+...
T Consensus        88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHH
T ss_pred             HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence            99987        3555678999999999999999999999999996        34444 344455554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.19  E-value=2.8e-11  Score=118.07  Aligned_cols=154  Identities=12%  Similarity=0.104  Sum_probs=124.9

Q ss_pred             HcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC--------Ccch
Q 008016          130 MMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD--------DEPL  201 (581)
Q Consensus       130 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~~~~  201 (581)
                      ..+++++|+..++.+++.          .+..+..+..+|..++..|++++|+..|++++.+......        ..+.
T Consensus       246 ~l~~~~~A~~~~~~~~~~----------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~  315 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE----------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF  315 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence            345667788777777665          6778889999999999999999999999999988632110        0123


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      ...+++++|.+|...|++++|+..|++++.+.        |....+++++|.+|...|++++|+..|++++++       
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------  380 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------  380 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence            36788999999999999999999999999863        234788999999999999999999999999987       


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESV  309 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~  309 (581)
                       .|....++..++.++...+++++|...
T Consensus       381 -~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          381 -NPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             556677899999999999999888753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.19  E-value=3.7e-11  Score=117.22  Aligned_cols=160  Identities=16%  Similarity=0.265  Sum_probs=124.1

Q ss_pred             cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC-------CCHHHHHH
Q 008016          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK-------TSILLVTS  247 (581)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~  247 (581)
                      .+++++|+..++.+...       .|..+..+..+|..++..|++++|+..|++++.+.......       ..+....+
T Consensus       247 l~~~~~A~~~~~~~~~~-------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~  319 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKE-------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA  319 (457)
T ss_dssp             EEEEECCCCGGGSCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHH-------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence            44556666655554333       26677889999999999999999999999999975331000       01234688


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      +.++|.+|...|++++|+..+++++++        .|....+++++|.+|..+|++++|+..|++++++        +|.
T Consensus       320 ~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~  383 (457)
T 1kt0_A          320 FLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQ  383 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C--
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCC
Confidence            999999999999999999999999998        5667889999999999999999999999999975        456


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHH-HHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVE-LYKKALR  357 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  357 (581)
                      ...++..++.++...|++++|.. .+.+++.
T Consensus       384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          384 NKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66788999999999999988764 3444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.19  E-value=2.4e-10  Score=96.02  Aligned_cols=122  Identities=11%  Similarity=0.124  Sum_probs=102.3

Q ss_pred             HHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHH
Q 008016          128 MIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILL  207 (581)
Q Consensus       128 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (581)
                      +...|++++|+..++++++.          .|....++..+|.++...|++++|+..+++++...       |....++.
T Consensus        20 ~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~   82 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYA   82 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHH
Confidence            45678999999999999987          67778899999999999999999999999998876       33345788


Q ss_pred             HHHHH-HHhccCH--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          208 HMGSM-YSTLENY--EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       208 ~l~~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      .+|.+ +...|++  ++|+..+++++...     +   ....++..+|.++...|++++|+..++++++.
T Consensus        83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           83 ALATVLYYQASQHMTAQTRAMIDKALALD-----S---NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            99999 8899999  99999999999862     2   23567899999999999999999999999987

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.16  E-value=2.3e-09  Score=84.44  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      .++.+|..+...|++++|+..++++++.     .++++....++..+|.++...|++++|+..|++++..     .++++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~   73 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD   73 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence            4678899999999999999999999987     3445555688999999999999999999999999986     24555


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....++..+|.++...|++++|+..+++++..
T Consensus        74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999986

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.15  E-value=1.7e-09  Score=84.45  Aligned_cols=118  Identities=20%  Similarity=0.375  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      ...++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+.+++++++.       
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------   72 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------   72 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence            3677889999999999999999999999987        3445678899999999999999999999999876       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG  387 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  387 (581)
                       .|....++..+|.++...|++++|..++++++..       .|+.   ..++..++.++...|
T Consensus        73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNN---AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHC
T ss_pred             -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCc---HHHHHHHHHHHHhcc
Confidence             2344567889999999999999999999999886       2333   334567777776554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.15  E-value=2.5e-09  Score=84.23  Aligned_cols=116  Identities=20%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (581)
                      +..+|..+...|++++|+..+++++...     ++++....++..+|.++...|++++|+..+++++..     .++++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-----PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcc
Confidence            4678999999999999999999998763     555666678999999999999999999999999985     344444


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHH
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLV  506 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  506 (581)
                      ...++..+|.++...|++++|+..+++++...     |+++....+...+.
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~  120 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence            57789999999999999999999999998864     56554444443333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.15  E-value=4.1e-09  Score=94.13  Aligned_cols=262  Identities=13%  Similarity=0.036  Sum_probs=168.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHH
Q 008016          124 EVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLD  203 (581)
Q Consensus       124 ~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  203 (581)
                      .++..+-.|+|..++.-..+   .       .+..+.  .....+.++|..+|++...              ..+.|.. 
T Consensus        19 ~ikn~fy~G~yq~~i~e~~~---~-------~~~~~~--~~~~~~~Rs~iAlg~~~~~--------------~~~~~~~-   71 (310)
T 3mv2_B           19 NIKQNYYTGNFVQCLQEIEK---F-------SKVTDN--TLLFYKAKTLLALGQYQSQ--------------DPTSKLG-   71 (310)
T ss_dssp             HHHHHHTTTCHHHHTHHHHT---S-------SCCCCH--HHHHHHHHHHHHTTCCCCC--------------CSSSTTH-
T ss_pred             HHHHHHHhhHHHHHHHHHHh---c-------CccchH--HHHHHHHHHHHHcCCCccC--------------CCCCHHH-
Confidence            34556778999988873322   1       122233  3556677888888888742              1222332 


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      .+...++..+ . ++   |+..+++.+..     +...   ..++..+|.++...|++++|++.+.+++..     + ..
T Consensus        72 ~a~~~la~~~-~-~~---a~~~l~~l~~~-----~~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~-~~  132 (310)
T 3mv2_B           72 KVLDLYVQFL-D-TK---NIEELENLLKD-----KQNS---PYELYLLATAQAILGDLDKSLETCVEGIDN-----D-EA  132 (310)
T ss_dssp             HHHHHHHHHH-T-TT---CCHHHHHTTTT-----SCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----S-CS
T ss_pred             HHHHHHHHHh-c-cc---HHHHHHHHHhc-----CCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----C-CC
Confidence            2334444443 2 22   66666665431     1122   233468999999999999999999998653     1 12


Q ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Q 008016          284 ADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG------RVGMAMCSLAHAKCANG--NAEEAVELYKKA  355 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~a  355 (581)
                      +....++..++.++..+|+.+.|.+.++++.+.        +|      +.......-+.+....|  ++.+|..+|+++
T Consensus       133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El  204 (310)
T 3mv2_B          133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL  204 (310)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            467888999999999999999999999988765        23      22223333344455555  999999999997


Q ss_pred             HHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHccCHHH
Q 008016          356 LRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--HPSFVTHLLNLAASYSRSKNFVE  433 (581)
Q Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~  433 (581)
                      .+.       .++ ......+.+   ++..+|++++|...++.+++.....-..+  .|....++.+++.+....|+  +
T Consensus       205 ~~~-------~p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~  271 (310)
T 3mv2_B          205 SQT-------FPT-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D  271 (310)
T ss_dssp             HTT-------SCS-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred             HHh-------CCC-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence            543       222 111122233   89999999999999997766543210000  24566788888888888898  8


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcchH
Q 008016          434 AERLLRICLDIMTKTVGPDDQSIS  457 (581)
Q Consensus       434 A~~~~~~al~~~~~~~~~~~~~~~  457 (581)
                      |.++++++.+.     .|+||.+.
T Consensus       272 a~~l~~qL~~~-----~P~hp~i~  290 (310)
T 3mv2_B          272 TEDLTNQLVKL-----DHEHAFIK  290 (310)
T ss_dssp             THHHHHHHHHT-----TCCCHHHH
T ss_pred             HHHHHHHHHHh-----CCCChHHH
Confidence            88998888773     45565443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.15  E-value=9.6e-09  Score=91.77  Aligned_cols=259  Identities=14%  Similarity=0.075  Sum_probs=166.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008016          171 GYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLG  250 (581)
Q Consensus       171 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  250 (581)
                      -.+..|+|..++.-..+       +.+..+..  ....+.++|..+|++....               .+.|. ..+...
T Consensus        22 n~fy~G~yq~~i~e~~~-------~~~~~~~~--~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a~~~   76 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIEK-------FSKVTDNT--LLFYKAKTLLALGQYQSQD---------------PTSKL-GKVLDL   76 (310)
T ss_dssp             HHHTTTCHHHHTHHHHT-------SSCCCCHH--HHHHHHHHHHHTTCCCCCC---------------SSSTT-HHHHHH
T ss_pred             HHHHhhHHHHHHHHHHh-------cCccchHH--HHHHHHHHHHHcCCCccCC---------------CCCHH-HHHHHH
Confidence            34567999998873322       22333332  4456678888889887421               12221 223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHH
Q 008016          251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM  330 (581)
Q Consensus       251 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  330 (581)
                      ++..+.  ++   |+..+++.++.       ..+. ...+..+|.++...|++++|++++.+.+..      ...+....
T Consensus        77 la~~~~--~~---a~~~l~~l~~~-------~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------~~~~~~le  137 (310)
T 3mv2_B           77 YVQFLD--TK---NIEELENLLKD-------KQNS-PYELYLLATAQAILGDLDKSLETCVEGIDN------DEAEGTTE  137 (310)
T ss_dssp             HHHHHT--TT---CCHHHHHTTTT-------SCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------SCSTTHHH
T ss_pred             HHHHhc--cc---HHHHHHHHHhc-------CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------CCCcCcHH
Confidence            444432  22   56666554432       1122 344568999999999999999999998652      11246788


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCC-hHHHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHHHHH
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDD-SIMENMRIDLAEL--LHIVG--RGQEGRELLEECLLITEK  405 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~~~la~~--~~~~g--~~~~A~~~~~~al~~~~~  405 (581)
                      ++..++.++...|+.+.|.+.++++.+.       .++. ..--.+...++..  ....|  ++.+|..+|+++...   
T Consensus       138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~-------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---  207 (310)
T 3mv2_B          138 LLLLAIEVALLNNNVSTASTIFDNYTNA-------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---  207 (310)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---
Confidence            8899999999999999999999998775       2210 0001122344433  55556  999999999996542   


Q ss_pred             hcCCCChH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          406 YKGKEHPS--FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD--DQSISFPMLHLGITLYHLNRDKEAEKLVL  481 (581)
Q Consensus       406 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~  481 (581)
                           .|.  ....+.+   ++..+|++++|...++.+++..-.....+  .|....++.+++.+....|+  +|.+++.
T Consensus       208 -----~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~  277 (310)
T 3mv2_B          208 -----FPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN  277 (310)
T ss_dssp             -----SCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH
T ss_pred             -----CCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH
Confidence                 232  2223333   89999999999999997665431110000  25567788888888888997  8888988


Q ss_pred             HHHHHHHHHcCCCChhH
Q 008016          482 EALYIREIAFGKDSLPV  498 (581)
Q Consensus       482 ~a~~~~~~~~~~~~~~~  498 (581)
                      ++.+..     |+||.+
T Consensus       278 qL~~~~-----P~hp~i  289 (310)
T 3mv2_B          278 QLVKLD-----HEHAFI  289 (310)
T ss_dssp             HHHHTT-----CCCHHH
T ss_pred             HHHHhC-----CCChHH
Confidence            887754     788744

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.13  E-value=1.9e-09  Score=85.94  Aligned_cols=102  Identities=19%  Similarity=0.149  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      .+..+..+|..+...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++++       
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence            3678899999999999999999999999998        4556789999999999999999999999999986       


Q ss_pred             CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          324 NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                       .|....++..+|.++...|++++|+..+++++.+...
T Consensus        73 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           73 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence             3456678999999999999999999999999998765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.12  E-value=2.5e-09  Score=83.49  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPD  452 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  452 (581)
                      ...+..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++..        
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence            4567889999999999999999999998762        333467889999999999999999999999885        


Q ss_pred             CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcC
Q 008016          453 DQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLG  513 (581)
Q Consensus       453 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  513 (581)
                      .|....++..+|.++...|++++|..+++++++..     |++   ..++..++.++...|
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHhcc
Confidence            34456688899999999999999999999998753     333   366778888776554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.11  E-value=5.2e-10  Score=86.74  Aligned_cols=96  Identities=15%  Similarity=0.033  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      .+..+|..+...|++++|+..++++++.        .|....++..+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            4678899999999999999999999998        6677889999999999999999999999999987        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....++..+|.++...|++++|+..++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            55678899999999999999999999999876

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.10  E-value=7e-10  Score=86.02  Aligned_cols=97  Identities=10%  Similarity=-0.069  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      .+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        +|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P   82 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DP   82 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence            3578999999999999999999999987        3555678999999999999999999999999996        56


Q ss_pred             chHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          455 SISFPMLHLGITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       455 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      ....++..+|.++...|++++|+..+++++++.
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            667789999999999999999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.09  E-value=1.9e-09  Score=85.98  Aligned_cols=104  Identities=12%  Similarity=0.065  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHc
Q 008016          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAF  491 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  491 (581)
                      +.....+..+|.++...|++++|+..|++++..        .|....++..+|.++...|++++|+..+++++.+.    
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----   73 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD----   73 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----
Confidence            344678899999999999999999999999985        45667789999999999999999999999999853    


Q ss_pred             CCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 008016          492 GKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQER  532 (581)
Q Consensus       492 ~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~  532 (581)
                          |....++..+|.++...|+++ +|+..+++++++...
T Consensus        74 ----p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           74 ----GQSVKAHFFLGQCQLEMESYD-EAIANLQRAYSLAKE  109 (137)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHH
T ss_pred             ----chhHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHChh
Confidence                344578999999999999999 999999999998654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.09  E-value=1.9e-09  Score=101.61  Aligned_cols=133  Identities=13%  Similarity=0.139  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--------GKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                      .+..+..+|..+...|++++|+..|++++.+.....        ....+....++.++|.+|...|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            345688899999999999999999999998654420        012456788999999999999999999999999998


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVE  350 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  350 (581)
                      +        .|....+++.+|.+|...|++++|+..|++++++        .|....++..++.++...++++++..
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--------~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6        5667889999999999999999999999999987        34445677888888888888777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.07  E-value=3.6e-09  Score=83.47  Aligned_cols=107  Identities=10%  Similarity=0.097  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Q 008016          160 EEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGK  239 (581)
Q Consensus       160 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  239 (581)
                      ..+..+..+|..+...|++++|+..++++....       |....++..+|.++...|++++|+.++++++...... ..
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~   73 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence            456788999999999999999999999988764       3335678899999999999999999999999986542 23


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          240 TSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       240 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      +.+....++..+|.++...|++++|+..++++++.
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33444788999999999999999999999999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.07  E-value=1.5e-08  Score=79.83  Aligned_cols=106  Identities=14%  Similarity=0.098  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccC
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYM  365 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  365 (581)
                      .+..+..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++......   
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---   71 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---   71 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc---
Confidence            4677899999999999999999999999986        24446788999999999999999999999999987642   


Q ss_pred             CCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          366 SLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       366 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      .++......++..+|.++...|++++|+.++++++..
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            3344444678899999999999999999999999886

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=3e-09  Score=86.06  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=91.4

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      +.....+..+|..+...|++++|+.+|++++..     .++++....++..+|.++...|++++|+..+++++..     
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----   94 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-----   94 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----
Confidence            455677899999999999999999999999874     3344445788999999999999999999999999987     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                         .|....++..+|.++...|++++|..+++++++.
T Consensus        95 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           95 ---DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             ---TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence               4445788999999999999999999999999986

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.05  E-value=7e-09  Score=79.97  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      +..+..+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|...++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            567888999999999999999999999987        4455778999999999999999999999999986        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      .|....++..+|.++...|++++|...++++++.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3445678899999999999999999999999875

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=3.6e-09  Score=85.62  Aligned_cols=120  Identities=10%  Similarity=0.006  Sum_probs=98.3

Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+.....+..+|..+...|++++|+.+|+++++.       .++++....++.++|.++...|++++|+..+++++... 
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-   95 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-   95 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-
Confidence            3456788999999999999999999999999874       45554456788999999999999999999999998862 


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (581)
                             |....++..+|.++...|++++|+.++++++.+        .|....++..++.+.
T Consensus        96 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           96 -------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS  143 (148)
T ss_dssp             -------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred             -------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence                   333568889999999999999999999999985        344445555555544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.04  E-value=2.7e-09  Score=100.57  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008016          244 LVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR--------GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILK  315 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  315 (581)
                      .+..+..+|..+...|++++|+..|++++++.....        ....+....++.++|.+|..+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            356688899999999999999999999998654320        012566788999999999999999999999999997


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHH
Q 008016          316 IYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRE  394 (581)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  394 (581)
                      +        +|....++..+|.+|...|++++|+..|++++++       .|++   ..++..++.++...++.+++..
T Consensus       302 ~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-------~P~~---~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 I--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APED---KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence            5        4566788999999999999999999999999987       3333   3355778888888888777654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.03  E-value=4.9e-09  Score=80.86  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      +..+..+|..+...|++++|+..+++++...     ++   ...++..+|.++...|++++|+..++++++.        
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------   67 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-----PH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------   67 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------
Confidence            3567889999999999999999999998862     22   3568899999999999999999999999987        


Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA  338 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  338 (581)
                      .|....++..+|.++...|++++|...++++++.        .|....++..++.+
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~  115 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNM  115 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHh
Confidence            4556778999999999999999999999999874        33444555555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.99  E-value=1.6e-09  Score=101.07  Aligned_cols=144  Identities=17%  Similarity=0.089  Sum_probs=88.6

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc--CCC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY--GKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHR  270 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  270 (581)
                      +..+..+..+|..++..|++++|+..|++++.+.....  ...       ......++.++|.+|...|++++|+.++++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44566788999999999999999999999998632210  000       000114889999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH-HHHCCCHHHHH
Q 008016          271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHA-KCANGNAEEAV  349 (581)
Q Consensus       271 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~  349 (581)
                      ++++        +|....+++++|.+|...|++++|+..|++++++        .|....++..++.+ ....+..+++.
T Consensus       256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--------APDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988        5667889999999999999999999999999876        34455667777777 34556778888


Q ss_pred             HHHHHHHHHH
Q 008016          350 ELYKKALRVI  359 (581)
Q Consensus       350 ~~~~~al~~~  359 (581)
                      ..|.+++...
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8998888763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.98  E-value=2.3e-09  Score=82.64  Aligned_cols=90  Identities=16%  Similarity=0.244  Sum_probs=75.7

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 008016          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLG  464 (581)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  464 (581)
                      ..|++++|+.+|++++..     +.+.|....++..+|.+|...|++++|+..+++++++        .|....++..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999875     1234778889999999999999999999999999985        466677899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHH
Q 008016          465 ITLYHLNRDKEAEKLVLEALYIR  487 (581)
Q Consensus       465 ~~~~~~g~~~~A~~~~~~a~~~~  487 (581)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999865

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.98  E-value=1.9e-09  Score=83.20  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 008016          215 TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLG  294 (581)
Q Consensus       215 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  294 (581)
                      ..|++++|+.+|++++.+     +.++|....++..+|.+|...|++++|+..++++++.        .|....++..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence            468999999999999874     1225778899999999999999999999999999998        556688999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHHH
Q 008016          295 SLFIKEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       295 ~~~~~~g~~~~A~~~~~~al~~~  317 (581)
                      .++...|++++|+..+++++...
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~   91 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAET   91 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.97  E-value=6.5e-09  Score=103.54  Aligned_cols=187  Identities=10%  Similarity=-0.028  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 008016          120 ELFNEVKSMIMMGNK-NDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD----------LKFVQSLLDMM  188 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~  188 (581)
                      .+........+.|++ ++|++.+++++..          +|+...+++..+.++...|+          +++++..++++
T Consensus        30 ~~~~~~~~~~~~~~~~eeal~~~~~~l~~----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~   99 (567)
T 1dce_A           30 SATQAVFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC   99 (567)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH
Confidence            344455555667776 5679999999988          89999999999999999988          89999999998


Q ss_pred             HHHHhhcCCCcchHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHH
Q 008016          189 SGIVDSLKDDEPLLDAILLHMGSMYSTLE--NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAV  265 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~  265 (581)
                      +...       |....+|+..++++...|  ++++++.++.++++..        +....+|...+.+....| .+++++
T Consensus       100 l~~~-------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--------~~N~~aW~~R~~~l~~l~~~~~~el  164 (567)
T 1dce_A          100 LRVN-------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------ERNFHCWDYRRFVAAQAAVAPAEEL  164 (567)
T ss_dssp             HHHC-------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred             HHhC-------CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--------cccccHHHHHHHHHHHcCCChHHHH
Confidence            7764       666778999999999999  7799999999999962        344788999999999999 899999


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIKE--------------GKAVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      +++.++++.        +|....+|+..+.++...              +.++++++++.+++.+        +|....+
T Consensus       165 ~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~sa  228 (567)
T 1dce_A          165 AFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSA  228 (567)
T ss_dssp             HHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHH
T ss_pred             HHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccH
Confidence            999988875        677788999999998875              5678999999999886        4555678


Q ss_pred             HHHHHHHHHHCCCHHH
Q 008016          332 MCSLAHAKCANGNAEE  347 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~  347 (581)
                      |+.++.++...+++++
T Consensus       229 W~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          229 WFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHhcCCCccc
Confidence            8889999988888655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.97  E-value=1e-09  Score=102.41  Aligned_cols=141  Identities=12%  Similarity=-0.000  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchH-----------------HHHHHHHHHHHHcCChH
Q 008016          412 PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSIS-----------------FPMLHLGITLYHLNRDK  474 (581)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~  474 (581)
                      +..+..+..+|..+...|++++|+..|++++.+.        |...                 .++.++|.++..+|+++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~  247 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--------GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD  247 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--------CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--------ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            3455678899999999999999999999999862        2222                 37899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-H
Q 008016          475 EAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYL-D  553 (581)
Q Consensus       475 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~  553 (581)
                      +|+.++++++++.        |....++..+|.++...|+++ +|+..|++++++        .|+...++..++.+. .
T Consensus       248 ~A~~~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~-~A~~~l~~al~l--------~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          248 EAIGHCNIVLTEE--------EKNPKALFRRGKAKAELGQMD-SARDDFRKAQKY--------APDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HHHHHHHHTTC--------------------------
T ss_pred             HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
Confidence            9999999999853        444588999999999999999 999999999875        355667778888874 4


Q ss_pred             HcCChhhhHHHHHHHHHHHHHHhh
Q 008016          554 KLGRKEEKFPLKKRLSNLRMKYKQ  577 (581)
Q Consensus       554 ~~g~~~~A~~~~~~a~~l~~~~~~  577 (581)
                      ..+..+++...|++++...++...
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567788999999999988776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.92  E-value=3.5e-08  Score=98.29  Aligned_cols=175  Identities=7%  Similarity=-0.068  Sum_probs=147.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHcCCCCchH
Q 008016          259 GRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK----------AVDAESVFSRILKIYTKVYGENDGRV  328 (581)
Q Consensus       259 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~  328 (581)
                      ...++|++.+.+++.+        +|....+|+..+.++...|+          +++++..++++++.        +|..
T Consensus        43 ~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~  106 (567)
T 1dce_A           43 ELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKS  106 (567)
T ss_dssp             CCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTC
T ss_pred             CCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCC
Confidence            3446789999999998        77888999999999999988          99999999999876        6777


Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHH
Q 008016          329 GMAMCSLAHAKCANG--NAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG-RGQEGRELLEECLLITEK  405 (581)
Q Consensus       329 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  405 (581)
                      ..+|...+.++...|  ++++++++++++++..       +.   ...+|...+.++...| .++++++++.++++.   
T Consensus       107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-------~~---N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---  173 (567)
T 1dce_A          107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ER---NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---  173 (567)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TT---CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-------cc---cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---
Confidence            889999999999999  7799999999999972       22   2567788999999999 899999999888754   


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC
Q 008016          406 YKGKEHPSFVTHLLNLAASYSRS--------------KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN  471 (581)
Q Consensus       406 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g  471 (581)
                           +|....+|...+.++...              +.++++++++.+++.+        +|....+|..++.++...+
T Consensus       174 -----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          174 -----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             -----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCC
T ss_pred             -----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCC
Confidence                 456667889999888774              6689999999999985        4666678999999998888


Q ss_pred             ChHH
Q 008016          472 RDKE  475 (581)
Q Consensus       472 ~~~~  475 (581)
                      ++++
T Consensus       241 ~~~~  244 (567)
T 1dce_A          241 PHDV  244 (567)
T ss_dssp             CCSC
T ss_pred             Cccc
Confidence            8655

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.90  E-value=2.1e-09  Score=82.05  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+..++++++.        
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------   69 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------   69 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Confidence            456778999999999999999999999987        3445678999999999999999999999999975        


Q ss_pred             Cch--HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 008016          325 DGR--VGMAMCSLAHAKCAN-GNAEEAVELYKKALRV  358 (581)
Q Consensus       325 ~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  358 (581)
                      .|.  ...++..+|.++... |++++|+.++++++..
T Consensus        70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            234  567899999999999 9999999999998875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.88  E-value=6e-09  Score=79.51  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=85.7

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      ....++..+|.++...|++++|+..++++++.        .|....++..+|.++...|++++|+.+++++++.      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------   69 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV------   69 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence            34566789999999999999999999999986        2344677899999999999999999999999986      


Q ss_pred             CCCCChHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHH
Q 008016          365 MSLDDSIMENMRIDLAELLHIV-GRGQEGRELLEECLLI  402 (581)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  402 (581)
                       .++ .....++..+|.++... |++++|++++++++..
T Consensus        70 -~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           70 -IED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             -SCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             -Ccc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence             233 11245678999999999 9999999999998764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.87  E-value=4.4e-06  Score=81.86  Aligned_cols=367  Identities=10%  Similarity=0.026  Sum_probs=209.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHhhcCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGD-LKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~  197 (581)
                      +..++.+...+-.|+++.+..+|++++..          .| ...++..........++ .+.....|+.++...   +.
T Consensus        15 R~vyer~l~~~P~~~~e~~~~iferal~~----------~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g~   80 (493)
T 2uy1_A           15 SAIMEHARRLYMSKDYRSLESLFGRCLKK----------SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---EN   80 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHSTT----------CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---TT
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHhcc----------CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---CC
Confidence            44555666666669999999999999863          23 33455544444444443 345666777777654   21


Q ss_pred             CcchHHHHHHHHHHHHH----hccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------------HhcCC
Q 008016          198 DEPLLDAILLHMGSMYS----TLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVL-------------GSIGR  260 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~  260 (581)
                       ++....+|......+.    .+|+.+.+...|++++..     +....  ...+......-             ...+.
T Consensus        81 -d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~~--~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~  152 (493)
T 2uy1_A           81 -YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGSL--SELWKDFENFELELNKITGKKIVGDTLPI  152 (493)
T ss_dssp             -CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             -CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhhH--HHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence             2222344555544433    356788899999999863     11111  11111111110             11223


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHcCCCCchHHHH
Q 008016          261 AKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK---------AVDAESVFSRILKIYTKVYGENDGRVGMA  331 (581)
Q Consensus       261 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~  331 (581)
                      +..|...++.+......    ..   ...+......  ..++         .+.....|++++...        |.....
T Consensus       153 y~~ar~~y~~~~~~~~~----~s---~~~W~~y~~~--E~~~~~~~~~~~~~~Rv~~~ye~al~~~--------p~~~~l  215 (493)
T 2uy1_A          153 FQSSFQRYQQIQPLIRG----WS---VKNAARLIDL--EMENGMKLGGRPHESRMHFIHNYILDSF--------YYAEEV  215 (493)
T ss_dssp             HHHHHHHHHHHHHHHHT----CS---HHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHHT--------TTCHHH
T ss_pred             HHHHHHHHHHHHHHHhh----cc---HHHHHHHHHH--HhcCCccCcchhhHHHHHHHHHHHHHcC--------CCCHHH
Confidence            44455555555444321    01   1233332222  2222         334567888877652        333677


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHhcC
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT---EKYKG  408 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~  408 (581)
                      |...+..+...|+.++|...|++++.. ..       ...+   +...+..    .+.++.   ++......   ....+
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~-------~~~l---~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~  277 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SD-------GMFL---SLYYGLV----MDEEAV---YGDLKRKYSMGEAESA  277 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-------SSHH---HHHHHHH----TTCTHH---HHHHHHHTC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-------cHHH---HHHHHhh----cchhHH---HHHHHHHHHhhccchh
Confidence            888888899999999999999999986 22       2221   1211211    111221   22222211   00000


Q ss_pred             --CCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHH
Q 008016          409 --KEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLN-RDKEAEKLVLEALY  485 (581)
Q Consensus       409 --~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~  485 (581)
                        .........+...+......++.+.|...|+++ ..      +.  .....+...|.+....+ +.+.|...|+.+++
T Consensus       278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~  348 (493)
T 2uy1_A          278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL  348 (493)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence              012233456777788888889999999999998 31      11  23345555566655555 69999999999988


Q ss_pred             HHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHH
Q 008016          486 IREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLK  565 (581)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  565 (581)
                      ..     ++.|.   .+...+......|+.+ .|...|+++.         .+   ...+......-...|+.+.+...+
T Consensus       349 ~~-----~~~~~---~~~~yid~e~~~~~~~-~aR~l~er~~---------k~---~~lw~~~~~fE~~~G~~~~~r~v~  407 (493)
T 2uy1_A          349 KH-----PDSTL---LKEEFFLFLLRIGDEE-NARALFKRLE---------KT---SRMWDSMIEYEFMVGSMELFRELV  407 (493)
T ss_dssp             HC-----TTCHH---HHHHHHHHHHHHTCHH-HHHHHHHHSC---------CB---HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HC-----CCCHH---HHHHHHHHHHHcCCHH-HHHHHHHHHH---------HH---HHHHHHHHHHHHHCCCHHHHHHHH
Confidence            53     44453   3444566777888888 8888887762         12   345556666667789999999999


Q ss_pred             HHHHHHH
Q 008016          566 KRLSNLR  572 (581)
Q Consensus       566 ~~a~~l~  572 (581)
                      ++++...
T Consensus       408 ~~~~~~~  414 (493)
T 2uy1_A          408 DQKMDAI  414 (493)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988744

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.80  E-value=1.3e-08  Score=80.44  Aligned_cols=86  Identities=15%  Similarity=0.114  Sum_probs=76.2

Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHcCCCCc
Q 008016          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA----------VDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      +.+.+++|+..+++++++        +|....++.++|.++...+++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456789999999999998        677889999999999999876          4999999999987        56


Q ss_pred             hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANG-----------NAEEAVELYKKALRV  358 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~  358 (581)
                      ....+++++|.+|...|           ++++|+.+|++|+++
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            77889999999999875           899999999999997

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.77  E-value=2.1e-08  Score=79.34  Aligned_cols=87  Identities=15%  Similarity=0.033  Sum_probs=75.1

Q ss_pred             HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHHHHHhcCCCCc
Q 008016          385 IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF----------VEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       385 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      +.+.+++|++.+++++++        .|....++.++|.++...+++          ++|+..|++++++        +|
T Consensus        14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP   77 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred             HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence            456789999999999887        466677899999999998875          5999999999996        67


Q ss_pred             chHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHH
Q 008016          455 SISFPMLHLGITLYHLN-----------RDKEAEKLVLEALYIR  487 (581)
Q Consensus       455 ~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~~  487 (581)
                      ....+++++|.+|..+|           ++++|+.+|++|+++.
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            78889999999999875           8999999999999874

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.74  E-value=1.2e-07  Score=69.03  Aligned_cols=86  Identities=19%  Similarity=0.301  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY  321 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  321 (581)
                      +....++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.+++++++.     
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----   72 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----   72 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence            345778999999999999999999999999987        4555778999999999999999999999999986     


Q ss_pred             CCCCchHHHHHHHHHHHHHHCC
Q 008016          322 GENDGRVGMAMCSLAHAKCANG  343 (581)
Q Consensus       322 ~~~~~~~~~~~~~la~~~~~~g  343 (581)
                         +|....++.++|.++...|
T Consensus        73 ---~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 ---DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             ---CTTCHHHHHHHHHHHHHHC
T ss_pred             ---CCCCHHHHHHHHHHHHhcC
Confidence               3445677888888887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.1e-08  Score=77.94  Aligned_cols=96  Identities=18%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      +..+..+|.++...|++++|+..|+++++.        .|....++.++|.++...|++++|+..+++++++.     ++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            567889999999999999999999999998        45567889999999999999999999999999752     22


Q ss_pred             C---chHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016          325 D---GRVGMAMCSLAHAKCANGNAEEAVELYK  353 (581)
Q Consensus       325 ~---~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (581)
                      +   .....++..+|.++...|++++|+..++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            2   1136778889999988888777665443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.69  E-value=2.4e-07  Score=67.35  Aligned_cols=87  Identities=21%  Similarity=0.234  Sum_probs=72.6

Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      .+.....+..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++++.   
T Consensus         5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---   73 (91)
T 1na3_A            5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---   73 (91)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---
Confidence            3456678899999999999999999999999985        35556788999999999999999999999998853   


Q ss_pred             cCCCChhHHHHHHHHHHHHHHcC
Q 008016          491 FGKDSLPVGEALDCLVSIQTRLG  513 (581)
Q Consensus       491 ~~~~~~~~~~~~~~la~~~~~~g  513 (581)
                        |   ....++..+|.++...|
T Consensus        74 --p---~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           74 --P---NNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             --T---TCHHHHHHHHHHHHHHC
T ss_pred             --C---CCHHHHHHHHHHHHhcC
Confidence              3   33467888888887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.6e-08  Score=75.02  Aligned_cols=95  Identities=11%  Similarity=-0.001  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (581)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (581)
                      ...+..+|.++...|++++|+..|++++++        .|....++.++|.++...|++++|+..+++++++.     |+
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~   70 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----ST   70 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----SS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC
Confidence            457889999999999999999999999985        45567789999999999999999999999998753     33


Q ss_pred             Ch---hHHHHHHHHHHHHHHcCCChHHHHHHH
Q 008016          495 SL---PVGEALDCLVSIQTRLGEDDTKLLELL  523 (581)
Q Consensus       495 ~~---~~~~~~~~la~~~~~~g~~~~~A~~~~  523 (581)
                      ++   ....++..++.++...|+.+ +|+..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~  101 (111)
T 2l6j_A           71 AEHVAIRSKLQYRLELAQGAVGSVQ-IPVVEV  101 (111)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHCCC-CCSSSS
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhHh-hhHhHH
Confidence            31   12577888999999888877 655443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.61  E-value=4e-06  Score=82.13  Aligned_cols=168  Identities=8%  Similarity=-0.021  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHH
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGN---------AEEAVELYKKALRVI  359 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~  359 (581)
                      .+..+-..+.+.|++++|.++|+++.+.      +-.| ...+|+.+-.++...+.         .++|.++|+++... 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-   99 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRN------GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-   99 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence            4556678889999999999999998764      1222 34567777777765543         67888888887653 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                          +..|+    ..+++.+...|.+.|++++|..++++....      .-.|+ ..+|+.+...|.+.|+.++|.++++
T Consensus       100 ----G~~Pd----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~------g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~  164 (501)
T 4g26_A          100 ----KVVPN----EATFTNGARLAVAKDDPEMAFDMVKQMKAF------GIQPR-LRSYGPALFGFCRKGDADKAYEVDA  164 (501)
T ss_dssp             ----TCCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCc-cceehHHHHHHHHCCCHHHHHHHHH
Confidence                23333    235678899999999999999999987543      12233 3578888999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      +..+.      +-.|+. .++..|...|.+.|+.++|.++++++.+.
T Consensus       165 ~M~~~------G~~Pd~-~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          165 HMVES------EVVPEE-PELAALLKVSMDTKNADKVYKTLQRLRDL  204 (501)
T ss_dssp             HHHHT------TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhc------CCCCCH-HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence            98762      233444 47889999999999999999999987653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.60  E-value=1.8e-06  Score=84.60  Aligned_cols=168  Identities=12%  Similarity=-0.030  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHHHH
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSK---------NFVEAERLLRICLDIMT  446 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~~  446 (581)
                      +..+-..+.+.|+.++|+++|+++...      .-.|+. .+|+.+..++...+         ..++|.++|++....  
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~pd~-~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--   99 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRN------GVQLSQ-YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--   99 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCCCH-HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCH-hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--
Confidence            455667889999999999999998764      122332 35666666665443         468888888877652  


Q ss_pred             HhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008016          447 KTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRV  526 (581)
Q Consensus       447 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a  526 (581)
                          +-.|+. .++..+...|.+.|++++|..+++++.+.   .   -.| ...++..+...|.+.|+.+ +|.+++++.
T Consensus       100 ----G~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g---~~P-d~~tyn~lI~~~~~~g~~~-~A~~l~~~M  166 (501)
T 4g26_A          100 ----KVVPNE-ATFTNGARLAVAKDDPEMAFDMVKQMKAF---G---IQP-RLRSYGPALFGFCRKGDAD-KAYEVDAHM  166 (501)
T ss_dssp             ----TCCCCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CCC-CHHHHHHHHHHHHHTTCHH-HHHHHHHHH
T ss_pred             ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C---CCC-ccceehHHHHHHHHCCCHH-HHHHHHHHH
Confidence                223444 47889999999999999999999987652   1   122 2367899999999999999 999999887


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Q 008016          527 LRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLR  572 (581)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~  572 (581)
                      .+.   -   -.| ...++..|...|.+.|+.++|.++++++.+..
T Consensus       167 ~~~---G---~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g  205 (501)
T 4g26_A          167 VES---E---VVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV  205 (501)
T ss_dssp             HHT---T---CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             Hhc---C---CCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence            652   1   122 24678899999999999999999999987653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.60  E-value=2.3e-07  Score=71.01  Aligned_cols=84  Identities=10%  Similarity=0.069  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016          220 EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (581)
Q Consensus       220 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (581)
                      ++|+..|++++..     .   |....++..+|.++...|++++|+..++++++.        .|....++..+|.++..
T Consensus         2 ~~a~~~~~~al~~-----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~   65 (115)
T 2kat_A            2 QAITERLEAMLAQ-----G---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG   65 (115)
T ss_dssp             CCHHHHHHHHHTT-----T---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence            3577788888764     2   223578999999999999999999999999987        45667889999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHH
Q 008016          300 EGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       300 ~g~~~~A~~~~~~al~~~~~  319 (581)
                      .|++++|...|++++++...
T Consensus        66 ~g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           66 QGDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             HTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccc
Confidence            99999999999999987544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=5.3e-07  Score=71.40  Aligned_cols=111  Identities=15%  Similarity=0.170  Sum_probs=93.3

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (581)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (581)
                      .+++++|+.+|+++.+.       .++   .+.  +|.+|...+.+++|+.+|+++.+.          ....++++||.
T Consensus         8 ~~d~~~A~~~~~~aa~~-------g~~---~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-------NEM---FGC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-------TCT---THH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC-------CCH---hhh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHH
Confidence            35788999999999864       121   222  899999999999999999999875          23678999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 008016          296 LFIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (581)
Q Consensus       296 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (581)
                      +|..    .+++++|..+|+++.+.          ....++.+||.+|..    .+++++|+.+|+++.+.
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            9999    89999999999999863          235778999999999    89999999999999875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.58  E-value=5e-07  Score=69.09  Aligned_cols=83  Identities=17%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC
Q 008016          263 KAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN  342 (581)
Q Consensus       263 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  342 (581)
                      +|+..|+++++.        .|....++..+|.++...|++++|+..|+++++.        .|....++..+|.++...
T Consensus         3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence            567778887765        4556789999999999999999999999999986        345567889999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 008016          343 GNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       343 g~~~~A~~~~~~al~~~~~  361 (581)
                      |++++|+..|++++++...
T Consensus        67 g~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccc
Confidence            9999999999999998654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.58  E-value=2.7e-07  Score=68.40  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 008016          242 ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTK  319 (581)
Q Consensus       242 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  319 (581)
                      |....++..+|.+|...|++++|+..|+++++.        .|....++..+|.+|...|++++|+..|++++++...
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            344678999999999999999999999999998        5566778999999999999999999999999988654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.56  E-value=8.4e-07  Score=65.70  Aligned_cols=71  Identities=14%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          283 SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      +|....++..+|.+|...|++++|+..|+++++.        +|....++..+|.+|...|++++|+..+++++++...
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4666788999999999999999999999999987        3455668999999999999999999999999998654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.55  E-value=5.5e-07  Score=71.31  Aligned_cols=112  Identities=7%  Similarity=-0.021  Sum_probs=92.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  508 (581)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  508 (581)
                      +++++|+.+|+++.+.       .++.   +.  ||.+|...+..++|+++|+++.+.       .++   .+...||.+
T Consensus         9 ~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~---~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL-------NSG---NGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-------TCH---HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-------CCH---HHHHHHHHH
Confidence            5789999999999873       2332   22  999999999999999999999773       333   788999999


Q ss_pred             HHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHH
Q 008016          509 QTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       509 ~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~  573 (581)
                      |..    .++++ +|+.+|+++.+.       .+   ..+..+||.+|..    .+++++|+.+|+++.+.+.
T Consensus        67 y~~G~g~~~d~~-~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           67 YENGKYVKKDLR-KAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHCSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCCccHH-HHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            998    78888 999999999862       23   5678999999999    8999999999999988753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.45  E-value=6.7e-05  Score=73.49  Aligned_cols=343  Identities=11%  Similarity=0.011  Sum_probs=186.4

Q ss_pred             HcC-ChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 008016          130 MMG-NKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLH  208 (581)
Q Consensus       130 ~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (581)
                      +.| +.+.|..+|+.++...          |.               |+++.+..+|++++...       |.. .+|..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~----------P~---------------~~~e~~~~iferal~~~-------ps~-~LW~~   52 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY----------MS---------------KDYRSLESLFGRCLKKS-------YNL-DLWML   52 (493)
T ss_dssp             ------CCHHHHHHHHHHHH----------HT---------------TCHHHHHHHHHHHSTTC-------CCH-HHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHC----------CC---------------CCHHHHHHHHHHHhccC-------CCH-HHHHH
Confidence            456 4888899999888763          21               78999999999987643       222 23444


Q ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 008016          209 MGSMYSTLE-NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG----SIGRAKKAVEIYHRVITILELNRGTES  283 (581)
Q Consensus       209 l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~  283 (581)
                      ........+ ..+.....|+.++...    |.+ +.....|......+.    ..|+.+.+...|++++..     +...
T Consensus        53 Y~~f~~~~~~~~~~i~~~fe~al~~v----g~d-~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-----P~~~  122 (493)
T 2uy1_A           53 YIEYVRKVSQKKFKLYEVYEFTLGQF----ENY-WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-----PMGS  122 (493)
T ss_dssp             HHHHHHHHC----CTHHHHHHHHHHS----TTC-TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-----CCTT
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHHc----CCC-cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-----hhhh
Confidence            444333444 2355667778777642    222 222355555555443    346788899999999863     1111


Q ss_pred             hhhHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHC--CC----
Q 008016          284 ADLVLPLFSLGSLF-------------IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCAN--GN----  344 (581)
Q Consensus       284 ~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~----  344 (581)
                        ....+......-             ...+.+..|...++.+......    ..   ...+......-...  |-    
T Consensus       123 --~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s---~~~W~~y~~~E~~~~~~~~~~~  193 (493)
T 2uy1_A          123 --LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WS---VKNAARLIDLEMENGMKLGGRP  193 (493)
T ss_dssp             --HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CS---HHHHHHHHHHHHTCTTCCCHHH
T ss_pred             --HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----cc---HHHHHHHHHHHhcCCccCcchh
Confidence              111111111111             1122344445555554443221    01   12233322221111  11    


Q ss_pred             -HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 008016          345 -AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAA  423 (581)
Q Consensus       345 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  423 (581)
                       .+.....|++++...       |..   ..+|...+..+...|+.++|..+|++++.. .    .+ ..   .+...+.
T Consensus       194 ~~~Rv~~~ye~al~~~-------p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P----~~-~~---l~~~y~~  254 (493)
T 2uy1_A          194 HESRMHFIHNYILDSF-------YYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S----DG-MF---LSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHHHT-------TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C----CS-SH---HHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C----Cc-HH---HHHHHHh
Confidence             344667888888752       223   456778888999999999999999999986 1    22 21   1222222


Q ss_pred             HHHHccCHHHHHHHHHHHHHHH---HHhcC--CCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhH
Q 008016          424 SYSRSKNFVEAERLLRICLDIM---TKTVG--PDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPV  498 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~---~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  498 (581)
                      .    .+.++.   +++..+..   ....+  ...+.....+...+......|+.+.|...|+++ .    .  +.  ..
T Consensus       255 ~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~--~~--~~  318 (493)
T 2uy1_A          255 V----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----N--EG--VG  318 (493)
T ss_dssp             H----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----T--SC--CC
T ss_pred             h----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----C--CC--CC
Confidence            1    111111   22222211   00000  011223356677777777888899999999988 2    1  21  12


Q ss_pred             HHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHH
Q 008016          499 GEALDCLVSIQTRLG-EDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       499 ~~~~~~la~~~~~~g-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      ...+...|.+....+ +.+ .|...|+.+++.+     ++.|+.   +...+......|+.+.|..+|+++
T Consensus       319 ~~v~i~~A~lE~~~~~d~~-~ar~ife~al~~~-----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          319 PHVFIYCAFIEYYATGSRA-TPYNIFSSGLLKH-----PDSTLL---KEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHC-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHCCChH-HHHHHHHHHHHHC-----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345555566666666 477 9999999998843     344543   344577778899999999888875

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.28  E-value=0.00041  Score=64.41  Aligned_cols=212  Identities=9%  Similarity=0.002  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          204 AILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS-IGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       204 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      .+...+|..|...|++++-..++..........   .....+.....+-..+.. -+..+.-++...++++.....    
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----   92 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----   92 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence            357889999999999999888887765544332   223445555566665554 355666677777777766541    


Q ss_pred             ChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          283 SADLVL--PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       283 ~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                      ......  .-..+|.+|...|+|.+|...+.+.++.+++.  .+.......+..-..+|...+++.++...+.++.....
T Consensus        93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~  170 (394)
T 3txn_A           93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN  170 (394)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence            222222  34589999999999999999999999887664  33456778888889999999999999999999988865


Q ss_pred             hhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccC
Q 008016          361 DSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  430 (581)
                      ..   .+++...+.+...-|.++. ..++|.+|...|-++...+...   ..+....+...++.+-...++
T Consensus       171 ai---~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          171 AI---YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HS---CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             cC---CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            42   3555666777777788888 8999999999999987655432   234333333444444444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.28  E-value=2.3e-06  Score=63.18  Aligned_cols=88  Identities=13%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVL-PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      ...|..+...|++++|+..++++++.        .|.... ++..+|.++...|++++|+..|+++++..     ++++ 
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-----PDSP-   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTST-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcH-
Confidence            45788999999999999999999987        455567 89999999999999999999999999862     2222 


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                        .++.+        +.+.++...|+++.....
T Consensus        70 --~~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           70 --ALQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             --HHHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             --HHHHH--------HHHHHHHHHHHHHhccCc
Confidence              22221        556777777777766543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=98.25  E-value=0.00066  Score=63.06  Aligned_cols=212  Identities=12%  Similarity=0.073  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      -.+...+|..|...|++++-..++..........   ...........+-..+.. -+..+.-.+...++++..+..   
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---   92 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---   92 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---
Confidence            3567789999999999999988887765544332   123344445555555544 355566667777777776532   


Q ss_pred             CCchHHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          324 NDGRVGM--AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLL  401 (581)
Q Consensus       324 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  401 (581)
                       ......  .-..+|..|...|+|.+|.+.+.+..+.+++.    .+......++..-..+|...+++.++...+.++..
T Consensus        93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~----dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~  167 (394)
T 3txn_A           93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL----DDKNLLVEVQLLESKTYHALSNLPKARAALTSART  167 (394)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS----SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence             222323  34589999999999999999999999887763    34677788888899999999999999999999988


Q ss_pred             HHHHhcCCCChHH-HHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCC
Q 008016          402 ITEKYKGKEHPSF-VTHLLNLAASYS-RSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNR  472 (581)
Q Consensus       402 ~~~~~~~~~~~~~-~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  472 (581)
                      .....  ..+|.. +.....-|.++. ..++|.+|..+|-++..-+...   ..|....+...++.+-...++
T Consensus       168 ~~~ai--~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~  235 (394)
T 3txn_A          168 TANAI--YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ  235 (394)
T ss_dssp             HHHHS--CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccC--CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence            87654  244543 445556677788 8999999999999987654322   233333344444444444455

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.19  E-value=0.00019  Score=62.47  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHcCCCCch-HHHH
Q 008016          260 RAKKAVEIYHRVITILELNRGTESAD--LVLPLFSLGSLFIKE-----GKAVDAESVFSRILKIYTKVYGENDGR-VGMA  331 (581)
Q Consensus       260 ~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~  331 (581)
                      ...+|...+++++++        +|.  ...++..+|.+|...     |+.++|..+|++++++        +|. ...+
T Consensus       178 ~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~  241 (301)
T 3u64_A          178 TVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDH  241 (301)
T ss_dssp             HHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHH
T ss_pred             hHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchH
Confidence            357788888999888        444  567999999999995     9999999999999998        343 2567


Q ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 008016          332 MCSLAHAKCA-NGNAEEAVELYKKALRV  358 (581)
Q Consensus       332 ~~~la~~~~~-~g~~~~A~~~~~~al~~  358 (581)
                      +...|..+.. .|++++|..++++++..
T Consensus       242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          242 HITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            7788888887 59999999999999986

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.18  E-value=2.1e-05  Score=58.44  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      -++.+|..++..|+|..|+.+|++|+........ .......++..+|.++...|++++|+.++++++++        .|
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P   77 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence            3678999999999999999999999987653211 12345688899999999999999999999999988        44


Q ss_pred             hhHHHHHHHH
Q 008016          285 DLVLPLFSLG  294 (581)
Q Consensus       285 ~~~~~~~~la  294 (581)
                      ....+..+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            4455555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.18  E-value=4.2e-06  Score=61.76  Aligned_cols=87  Identities=13%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          122 FNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVA-ILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       122 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      +..|..+...|++++|+..|+++++.          .|.... ++..+|.++...|++++|+..+++++...    ++.+
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~   69 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQT----------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN----PDSP   69 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH----------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTST
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcH
Confidence            56788889999999999999999887          667777 89999999999999999999999988774    2322


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVL  233 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  233 (581)
                      .   ++..        +.+.+++..|+++....
T Consensus        70 ~---~~~~--------~~~~~a~~~~~~~~~~~   91 (99)
T 2kc7_A           70 A---LQAR--------KMVMDILNFYNKDMYNQ   91 (99)
T ss_dssp             H---HHHH--------HHHHHHHHHHCCTTHHH
T ss_pred             H---HHHH--------HHHHHHHHHHHHHhccC
Confidence            2   2211        56667777777666543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.09  E-value=0.00012  Score=54.16  Aligned_cols=71  Identities=7%  Similarity=-0.038  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      +.-++.+|..++..|+|..|+.+++.++.....-.........++..+|.++...|++++|+.++++++.+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34567899999999999999999999988764322223456778899999999999999999999999986

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.03  E-value=0.00013  Score=66.41  Aligned_cols=134  Identities=15%  Similarity=0.046  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHc---C-ChHHHHHHHHHHHHHHh
Q 008016          121 LFNEVKSMIMMGN---KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYI---G-DLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       121 l~~~~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~~~  193 (581)
                      ++-+|..+...++   +.+|+.+|+++++.          +|..+.++..++.+|...   + ........+..+.....
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l----------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS----------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            5556666655544   58999999999998          888888888777777532   2 11122222233332221


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                      . ....|..+.++..++..+...|++++|+..+++++.+.     + +   ...+..+|.++...|++++|++.|++|+.
T Consensus       269 a-~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          269 T-LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             T-CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             h-cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            1 12335555677788888888999999999999999972     1 1   45678899999999999999999999999


Q ss_pred             H
Q 008016          274 I  274 (581)
Q Consensus       274 ~  274 (581)
                      +
T Consensus       339 L  339 (372)
T 3ly7_A          339 L  339 (372)
T ss_dssp             H
T ss_pred             c
Confidence            8

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.00  E-value=0.00045  Score=63.02  Aligned_cols=133  Identities=13%  Similarity=0.052  Sum_probs=91.3

Q ss_pred             HHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---C-CHHHHHHHHHHHHHHHHHhc
Q 008016          207 LHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI---G-RAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       207 ~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~~  279 (581)
                      +..|..+...   ..+.+|+.+|++++++        +|..+.++..++.+|...   + .......-+.+++.....  
T Consensus       200 ~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--  269 (372)
T 3ly7_A          200 FYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--  269 (372)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--
Confidence            3445555544   4458899999999986        244455555555555421   1 111222333334432211  


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....+..+.++..++..+...|++++|+..+++++.+      .  +. ..++..+|.++...|++++|++.|.+|+.+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------n--~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------E--MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------C--CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------C--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1234566778888899899899999999999999997      1  23 467788999999999999999999999997

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.91  E-value=7.9e-05  Score=53.57  Aligned_cols=66  Identities=17%  Similarity=0.014  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          413 SFVTHLLNLAASYSRSKN---FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       413 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      .....+..+|.++...++   .++|..++++++.+        +|....++..+|..++..|+|++|+.+++++++.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344577788888876665   79999999999996        6788889999999999999999999999999874

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.90  E-value=0.00048  Score=54.09  Aligned_cols=128  Identities=15%  Similarity=0.035  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK  409 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  409 (581)
                      .++..-...+...|.|+.|+.....++.+.+... ..-.+.....++..+|.+++..|+|..|...|++++...+.....
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455556677889999999999999888865420 011244556778899999999999999999999999987643111


Q ss_pred             -----------------CChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 008016          410 -----------------EHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITL  467 (581)
Q Consensus       410 -----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  467 (581)
                                       +.+......+.++.||.+.|++++|+..++..         |....+..+...||.+|
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                             11123367788999999999999999987754         22233445556667655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.90  E-value=0.00012  Score=52.69  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=58.5

Q ss_pred             hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          284 ADLVLPLFSLGSLFIKEGK---AVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       284 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      |..+..+..+|.+++..++   .++|...++++++.        +|....+...+|..++..|+|++|+.+++++++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4456778888999876666   79999999999997        6777889999999999999999999999998875

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.88  E-value=0.0038  Score=54.49  Aligned_cols=84  Identities=11%  Similarity=0.113  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHH
Q 008016          219 YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSI-----GRAKKAVEIYHRVITILELNRGTESADL-VLPLFS  292 (581)
Q Consensus       219 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~  292 (581)
                      ..+|...+++++++.      ..-....++..+|.+|...     |+.++|..+|++++++        +|.. ..++..
T Consensus       179 l~~A~a~lerAleLD------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--------nP~~~id~~v~  244 (301)
T 3u64_A          179 VHAAVMMLERACDLW------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--------CSAHDPDHHIT  244 (301)
T ss_dssp             HHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--------CCTTCSHHHHH
T ss_pred             HHHHHHHHHHHHHhC------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--------CCCCCchHHHH
Confidence            457778888888862      2234577899999999994     9999999999999999        4433 677888


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHH
Q 008016          293 LGSLFIK-EGKAVDAESVFSRILKI  316 (581)
Q Consensus       293 la~~~~~-~g~~~~A~~~~~~al~~  316 (581)
                      .|..+.. .|++++|..++++++..
T Consensus       245 YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          245 YADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            8999988 59999999999999985

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.88  E-value=0.00052  Score=53.91  Aligned_cols=125  Identities=16%  Similarity=0.022  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCC---
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEH-PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGP---  451 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---  451 (581)
                      +..-...+...|.|+.|+.....++.+......... .....++..+|+.+...|+|..|...|++++...+.....   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            355566788899999999999998888654321112 2356788899999999999999999999999987643211   


Q ss_pred             --------------CCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 008016          452 --------------DDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ  509 (581)
Q Consensus       452 --------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  509 (581)
                                    +.+...+..+.++.||...|++++|+..++..         |.......+-..||++|
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence                          11223467788999999999999999888754         22223334555566654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.00011  Score=57.36  Aligned_cols=76  Identities=16%  Similarity=-0.011  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          497 PVGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       497 ~~~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      ....+.+++|.++.+.++..  .+++.+++..++       .+.| ...++++.||..+.+.|+|++|++++++++++.|
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-------~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-------KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-------HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            34578899999999988443  166666666665       2335 6789999999999999999999999999999998


Q ss_pred             HHhhhh
Q 008016          574 KYKQKV  579 (581)
Q Consensus       574 ~~~~~~  579 (581)
                      ++.++.
T Consensus       103 ~n~QA~  108 (152)
T 1pc2_A          103 QNNQAK  108 (152)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            776653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.70  E-value=0.0016  Score=50.83  Aligned_cols=67  Identities=10%  Similarity=0.045  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFIKEG---KAVDAESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....+.+++|+++...+   +.++++.+++..++.       +.| ....+++++|..+.+.|+|++|..++++++++
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45788999999999988   666999999988874       224 56788999999999999999999999999997

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.018  Score=55.24  Aligned_cols=236  Identities=12%  Similarity=0.052  Sum_probs=134.7

Q ss_pred             chHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          112 NDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGI  191 (581)
Q Consensus       112 ~~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  191 (581)
                      .++...+...+..+..+. .|+++.|++.+-..-+    ......+.+....++..+...+...|+++...+.+..+...
T Consensus        11 ~D~s~~~~~~~~~~~~l~-~~~~~~a~e~ll~lEK----~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk   85 (445)
T 4b4t_P           11 KDYSQILKEEFPKIDSLA-QNDCNSALDQLLVLEK----KTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK   85 (445)
T ss_dssp             -----------------C-HHHHHHHHHHHHHHHH----HHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH----HhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344444455555555553 3778888875533222    12224455566778888889999999999887766544332


Q ss_pred             HhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          192 VDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT---SILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       192 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                      .   +............+-.........+.  ......+..........   ....+.....|+.+|...|++.+|...+
T Consensus        86 r---~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL  160 (445)
T 4b4t_P           86 H---GQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADIL  160 (445)
T ss_dssp             T---TTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             h---hhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            2   22112222111111111112222221  11112222111111111   1235677788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHCCCHHH
Q 008016          269 HRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEE  347 (581)
Q Consensus       269 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  347 (581)
                      .....-...  ..+.......+.....+|...+++.+|...+.++.......  ..++. ....+...|.++...++|.+
T Consensus       161 ~~l~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~--~~~~~lk~~~~~~~~~~~~~e~~y~~  236 (445)
T 4b4t_P          161 CELQVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN--PKYESLKLEYYNLLVKISLHKREYLE  236 (445)
T ss_dssp             HHHHHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--CCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            887543211  12345567788889999999999999999999986543332  22333 45667788999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 008016          348 AVELYKKALRVIKD  361 (581)
Q Consensus       348 A~~~~~~al~~~~~  361 (581)
                      |..+|.++......
T Consensus       237 a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          237 VAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999887543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.049  Score=52.19  Aligned_cols=217  Identities=12%  Similarity=0.040  Sum_probs=136.1

Q ss_pred             cCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008016          175 IGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV  254 (581)
Q Consensus       175 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  254 (581)
                      .|+++.|++.+..+.+..+. ..+.+....++..+..++...|+++...+.+.-...    ..+. .+...........-
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~-~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~  102 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQ-ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVME  102 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS-SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHH
Confidence            36788888877665554433 455566667788888999999999887665542211    1121 12212212221211


Q ss_pred             HH-hcCCHHHHHHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CchHH
Q 008016          255 LG-SIGRAKKAVEIYHRVITILELNRGTE---SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN-DGRVG  329 (581)
Q Consensus       255 ~~-~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~  329 (581)
                      |. .....+.  ......+........+.   ....+.....|+.+|...|++.+|...+.....-   ..+.. .....
T Consensus       103 ~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~E---t~~~~~~~~kv  177 (445)
T 4b4t_P          103 YLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVE---TYGSMEMSEKI  177 (445)
T ss_dssp             HHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCSSSCHHHHH
T ss_pred             HHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---HHhcccHHHHH
Confidence            21 2222221  11112222211111111   1235667788999999999999999999887543   22222 23456


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 008016          330 MAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEK  405 (581)
Q Consensus       330 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  405 (581)
                      ..+.....+|...+++.+|..++.++......   ..+.+......+...|.++...++|.+|-.+|.++......
T Consensus       178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~---~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~  250 (445)
T 4b4t_P          178 QFILEQMELSILKGDYSQATVLSRKILKKTFK---NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI  250 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc---cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence            77888899999999999999999998654433   23445566777788999999999999999999998876543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.19  E-value=0.0024  Score=47.81  Aligned_cols=77  Identities=12%  Similarity=-0.041  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          498 VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESE-EVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       498 ~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ...+.+++|+++.+..+..     ..++++.+.+.++..+.| ...+.++.||..+.+.|+|++|..+++.++++.|...
T Consensus        34 s~~~~F~yAw~Lv~S~~~~-----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           34 SKSTQFEYAWCLVRTRYND-----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CHHHHHHHHHHHTTSSSHH-----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            3477889999999987766     445666666666666656 7789999999999999999999999999999988776


Q ss_pred             hhh
Q 008016          577 QKV  579 (581)
Q Consensus       577 ~~~  579 (581)
                      ++.
T Consensus       109 QA~  111 (126)
T 1nzn_A          109 QAK  111 (126)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.65  E-value=0.0072  Score=46.35  Aligned_cols=114  Identities=7%  Similarity=-0.072  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 008016          456 ISFPMLHLGITLYHLNRD------KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~  529 (581)
                      ..+.+..........|+.      ++-++.|++|+.............++..+...|.. ...++.+ +|.+.|+.++.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d-~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPD-DARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGG-GCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHH-HHHHHHHHHHHH
Confidence            334556666667777888      77777888777643211111222345555556644 5668888 999999999986


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhhh
Q 008016          530 QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQKV  579 (581)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~~  579 (581)
                      ++     .   .+.++...|..-.++|+...|.+.+.+++.++++-.+++
T Consensus        90 hK-----k---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           90 CK-----K---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             CT-----T---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             hH-----H---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            21     2   277888889999999999999999999999887655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.60  E-value=0.11  Score=38.91  Aligned_cols=67  Identities=12%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             hhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFIKEGKAVD---AESVFSRILKIYTKVYGENDG-RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....+.+++|+++....+...   ++.+++..+       ..+.| ..-..++.||..+++.|+|++|..+++..+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-------~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-------PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-------TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            456788999999999887766   555554443       34434 57788999999999999999999999999997

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.55  E-value=0.011  Score=61.10  Aligned_cols=107  Identities=10%  Similarity=-0.023  Sum_probs=84.1

Q ss_pred             cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 008016          454 QSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQERE  533 (581)
Q Consensus       454 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~  533 (581)
                      .....++..+...|.+.|+.++|..+|.++.++......|+    ..+|+.|...|++.|+.+ +|.++|++..+.    
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~-eA~~Lf~eM~~~----  194 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFK-ELVYVLFMVKDA----  194 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHH-HHHHHHHHHHHT----
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHH-HHHHHHHHHHHc----
Confidence            44456788999999999999999999988766544333332    268999999999999999 999999887652    


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCh-hhhHHHHHHHHHHH
Q 008016          534 FGSESEEVMLTLKKVVSYLDKLGRK-EEKFPLKKRLSNLR  572 (581)
Q Consensus       534 ~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~l~  572 (581)
                        .-.| ...+++.+...+.+.|+. ++|.++|+++..-+
T Consensus       195 --G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          195 --GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             --TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             --CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence              1223 357788999999999985 78899999987654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.54  E-value=0.028  Score=43.20  Aligned_cols=103  Identities=10%  Similarity=0.098  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhccCH------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          205 ILLHMGSMYSTLENY------EKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      .|..........|+.      ++-++.|++|+..............+..|...|.. ...++.++|.+.|+.++++    
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~----   89 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN----   89 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence            445555555666877      77778888888754332222334567777777755 5669999999999999987    


Q ss_pred             cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          279 RGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       279 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                          +...+.++...|..-.++|+...|...+.+++.+
T Consensus        90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~  123 (161)
T 4h7y_A           90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER  123 (161)
T ss_dssp             ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence                2223888889999999999999999999999875

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.48  E-value=0.038  Score=57.32  Aligned_cols=105  Identities=7%  Similarity=-0.128  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYG  322 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  322 (581)
                      ....+++.+...|.+.|+.++|..++.+..+.......   | ...+|+.|...|.+.|+.++|.++|+++.+.      
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~---P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~------  194 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL---L-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA------  194 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC---C-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc------
Confidence            45667889999999999999999999876554332222   2 3678999999999999999999999998763      


Q ss_pred             CCCchHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
Q 008016          323 ENDGRVGMAMCSLAHAKCANGN-AEEAVELYKKALRV  358 (581)
Q Consensus       323 ~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~  358 (581)
                      +-.| ...+|+.+...+.+.|+ .++|.++++++.+.
T Consensus       195 G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          195 GLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             TCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             CCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            2233 45778888889999998 57889999988764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.17  E-value=0.071  Score=56.15  Aligned_cols=75  Identities=20%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          333 CSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP  412 (581)
Q Consensus       333 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  412 (581)
                      ..++..+...|.+++|....+..              ..       .-......|++++|.+..+.          .++ 
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~--------------~~-------~f~~~l~~~~~~~A~~~~~~----------~~~-  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ--------------DQ-------KFELALKVGQLTLARDLLTD----------ESA-  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH--------------HH-------HHHHHHHHTCHHHHHHHHTT----------CCC-
T ss_pred             HHHHHHHHhCCChHHheecCCCc--------------ch-------heehhhhcCCHHHHHHHHHh----------hCc-
Confidence            45566677888888877654221              11       11245678999988877542          112 


Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          413 SFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                        ...|..+|..+.+.|+++.|+.+|.++
T Consensus       681 --~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 --EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence              247888999999999999999999886

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.12  E-value=0.013  Score=44.71  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          497 PVGEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       497 ~~~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      ....+.+++|+++.+..+..  .+++.+++..+.       .......+.++.||..+.+.|+|++|..+.+.++++.|.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-------~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            34577889999999988765  244444444443       233356788999999999999999999999999998877


Q ss_pred             Hhhhh
Q 008016          575 YKQKV  579 (581)
Q Consensus       575 ~~~~~  579 (581)
                      ..|+.
T Consensus       110 n~QA~  114 (144)
T 1y8m_A          110 NKQVG  114 (144)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            66543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.036  Score=52.93  Aligned_cols=110  Identities=10%  Similarity=0.039  Sum_probs=85.2

Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      .....++..+|..|...|++++|.+.|.++.....   +.  ......+..+..++...+++..+..++.++......  
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--  200 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---ST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--  200 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---Ch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--
Confidence            33445678899999999999999999999877542   22  335778888999999999999999999999877544  


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKI  316 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  316 (581)
                      +++...........|.++...++|.+|...|..+...
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            2333333445556678888999999999999887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.08  E-value=0.007  Score=45.44  Aligned_cols=74  Identities=11%  Similarity=-0.091  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          499 GEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       499 ~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ..+.+++|+++.+..+..  .+++.+++..+.       .+.....+.++.||..+.+.|+|++|..+.+.++++.|...
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-------~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-------cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            377889999999887765  144555544443       23335688999999999999999999999999998887766


Q ss_pred             hhh
Q 008016          577 QKV  579 (581)
Q Consensus       577 ~~~  579 (581)
                      ++.
T Consensus       113 QA~  115 (134)
T 3o48_A          113 QVG  115 (134)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.072  Score=50.83  Aligned_cols=109  Identities=16%  Similarity=0.097  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          285 DLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       285 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      ....++..+|..|...|++++|.+.|.++.....     ........+..+..++...+++..+..++.++......   
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~---  200 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAI-----STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK---  200 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT-----CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc---
Confidence            3455778899999999999999999999877542     23456778888889999999999999999999877654   


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                       ++++..........|.++...++|.+|-..|-.+...
T Consensus       201 -~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          201 -GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             -CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence             4555555566667788888899999999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.64  E-value=0.21  Score=52.47  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=50.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 008016          207 LHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADL  286 (581)
Q Consensus       207 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  286 (581)
                      ..+...+...|.+++|....+....                   ........|++++|.+..+.             ...
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~~-------------------~f~~~l~~~~~~~A~~~~~~-------------~~~  680 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQDQ-------------------KFELALKVGQLTLARDLLTD-------------ESA  680 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHHH-------------------HHHHHHHHTCHHHHHHHHTT-------------CCC
T ss_pred             HHHHHHHHhCCChHHheecCCCcch-------------------heehhhhcCCHHHHHHHHHh-------------hCc
Confidence            4555667778888877765532110                   12234568888888776432             112


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                      ...|..+|..+...|+++.|+.+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            457888999999999999999999876

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=95.56  E-value=1.3  Score=39.89  Aligned_cols=234  Identities=11%  Similarity=0.079  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      .+..++.=|.+++++++|++++.                      .-+..+.+.|++..|.++..-.++.+.+. ....+
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~----------------------~GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~   93 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILA----------------------SVSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVD   93 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCC
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHH----------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCC
Confidence            34445555566666666655443                      33445566677777777777666666654 11222


Q ss_pred             ChHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH--------
Q 008016          369 DSIMENMRIDLAELLHIVGRG-QEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR--------  439 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------  439 (581)
                      .    .....+..++.....- ..=..+.++++....+. |.........+..+|..|.+.+++.+|..+|-        
T Consensus        94 ~----~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~  168 (336)
T 3lpz_A           94 G----ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE  168 (336)
T ss_dssp             H----HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred             H----HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence            2    2234555555544432 12355777788877663 33222333567789999999999999988862        


Q ss_pred             HHHHHHHHhcCCCCcchHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHHHcC-----------------CCChhHHHH
Q 008016          440 ICLDIMTKTVGPDDQSISFPML-HLGITLYHLNRDKEAEKLVLEALYIREIAFG-----------------KDSLPVGEA  501 (581)
Q Consensus       440 ~al~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~~~~~  501 (581)
                      ...++..+......+.....+. .....|...++...|...+....+...+...                 |..|..  .
T Consensus       169 ~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--N  246 (336)
T 3lpz_A          169 VLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--N  246 (336)
T ss_dssp             HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--H
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--H
Confidence            1112222222222233333333 3344567889999999988877765433211                 112211  1


Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          502 LDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       502 ~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      +..+...-...+..     ..|....+.+...+..+.|.....+..+|.+|...-.
T Consensus       247 Fl~lLllt~q~~~~-----~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi~~  297 (336)
T 3lpz_A          247 FISMLLLSVQKGSP-----DLFRQLKSKYEANLNELNGIWDTALELIAEMYFGIQR  297 (336)
T ss_dssp             HHHHHHHHHHSCCH-----HHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCCC
Confidence            22222333344433     3666666666665554433667788899999987643

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.95  E-value=0.9  Score=34.68  Aligned_cols=68  Identities=12%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          159 IEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       159 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      .....+.+++++++....+..   +++.+++.....      ........++.+|..+++.|+|++|..+.+..+++
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            455667888888888877655   566666665442      11245678899999999999999999999999885

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.68  E-value=0.64  Score=43.59  Aligned_cols=105  Identities=12%  Similarity=-0.087  Sum_probs=77.7

Q ss_pred             HHHcCChHHHHHHHHHHHHHHHHhcCCC---Ch-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          383 LHIVGRGQEGRELLEECLLITEKYKGKE---HP-----------SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       383 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      ....|+.+.|...+++++.++.-.+-.+   .+           ....+...++..+...|++.+|+..+..++..    
T Consensus       125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----  200 (388)
T 2ff4_A          125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE----  200 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred             HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence            3345778888888888877653211000   00           11234556778888999999999999998874    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                          +|..-..+..+..++...|+..+|+..|+++.+.....+|-+.
T Consensus       201 ----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P  243 (388)
T 2ff4_A          201 ----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  243 (388)
T ss_dssp             ----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence                6777778899999999999999999999999988877776554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.59  E-value=0.69  Score=34.80  Aligned_cols=69  Identities=12%  Similarity=0.014  Sum_probs=52.1

Q ss_pred             ChhHHHHHHHHHHHHHHcCChH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          158 GIEEVAILDIIALGYVYIGDLK---FVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      ....+.+.+++|+++....+..   +++.+++.....      +.......++.+|..+++.|+|++|..+.+.++++
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3445677888888888876554   566666665442      12356778999999999999999999999999875

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.37  E-value=0.72  Score=43.22  Aligned_cols=105  Identities=11%  Similarity=0.033  Sum_probs=77.0

Q ss_pred             HhccCHHHHHHHHHHHHHHHHHHcCC---CC-----------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          214 STLENYEKSMLVYQRVINVLESRYGK---TS-----------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       214 ~~~g~~~~A~~~~~~al~~~~~~~~~---~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      ...|+.+.|...+.+++.+++..+-+   +.           .....+...++..+...|++.+++..+..++..     
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----  200 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----  200 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence            34567777777777777664321100   00           123345667788889999999999999998877     


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                         +|..-..+..+..++...|+..+|+..|++....+...+|-+..
T Consensus       201 ---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~  244 (388)
T 2ff4_A          201 ---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  244 (388)
T ss_dssp             ---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence               66667788899999999999999999999999887776665443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.03  E-value=4.2  Score=44.43  Aligned_cols=209  Identities=11%  Similarity=-0.027  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------ccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDS-------------NYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLE  397 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  397 (581)
                      ..+.+|.++...|++++|..+|+++..-....             ....+........|..+..++...|.++.+++..+
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34779999999999999999998863211100             00011111223446677888889999999999999


Q ss_pred             HHHHHHHHhcCCCChHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHH
Q 008016          398 ECLLITEKYKGKEHPSF-VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEA  476 (581)
Q Consensus       398 ~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  476 (581)
                      .|++..    +.+.+.. ...+.++=..+...|+|++|...+...-.         ......++..|...++..|..++=
T Consensus       924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhh
Confidence            998753    2333332 33567777888999999999877654322         122234555555555555554433


Q ss_pred             HHH--------HHHHHHHH-HHH-cCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC---HHHHH
Q 008016          477 EKL--------VLEALYIR-EIA-FGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSES---EEVML  543 (581)
Q Consensus       477 ~~~--------~~~a~~~~-~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~  543 (581)
                      ..+        .+..+... +.. .-...|.   .+..|-..+...|++...|..+|+++.++....-....   .....
T Consensus       991 ~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~~~~~~~~~~~~~q~~ 1067 (1139)
T 4fhn_B          991 LNYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRYISTTELIGKKERTFIIE 1067 (1139)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             hCCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHhhhccccccchhHHHHHH
Confidence            221        11122111 001 0012232   24445566677788886888899998877653211111   22345


Q ss_pred             HHHHHHHHHHHc
Q 008016          544 TLKKVVSYLDKL  555 (581)
Q Consensus       544 ~~~~la~~~~~~  555 (581)
                      ++..+.+++.-.
T Consensus      1068 ~yL~~INaLslv 1079 (1139)
T 4fhn_B         1068 HYLIVLNTLELL 1079 (1139)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcC
Confidence            566666666555

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.95  E-value=1.1  Score=36.02  Aligned_cols=101  Identities=14%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      ....|+++.|.+..+..             .....|..||......|+++-|+.+|.++-+.                  
T Consensus        15 AL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------------------   63 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF------------------   63 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------------------
T ss_pred             HHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------------------
Confidence            45788998888775542             12356888999999999999999999875432                  


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                      ..+.-+|...|+.+.-.+..+.+...       ..      ++....++...|++++++++|.+.
T Consensus        64 ~~L~~Ly~~tg~~e~L~kla~iA~~~-------g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           64 DKLSFLYLVTGDVNKLSKMQNIAQTR-------ED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHT-------TC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHC-------cc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            23444667777776544433332211       11      112233466778888888887654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.82  E-value=1.8  Score=44.15  Aligned_cols=123  Identities=7%  Similarity=-0.058  Sum_probs=79.5

Q ss_pred             CCC-HHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHH--HHc-CChHHHHHHHHHHHHHHHHhc---CCCC---
Q 008016          342 NGN-AEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELL--HIV-GRGQEGRELLEECLLITEKYK---GKEH---  411 (581)
Q Consensus       342 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~-g~~~~A~~~~~~al~~~~~~~---~~~~---  411 (581)
                      .|+ ++.|+.++++....       .|...    ++...+.+.  ... .+--+|+.++.++++......   ....   
T Consensus       261 t~~~~~~a~~~le~L~~~-------~p~~~----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKK-------DPIHD----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHH-------CGGGH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             cccHHHHHHHHHHHHHhh-------CCchh----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            445 57788888886554       12111    111122221  112 234567788877775432211   1111   


Q ss_pred             ----hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          412 ----PSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEA  483 (581)
Q Consensus       412 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  483 (581)
                          +.....+...+..+...|+++-|+++.++|+..        .|..-.+|..|+.+|..+|+|+.|+-.+..+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                122335556688888999999999999999986        5777789999999999999999999877654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.64  E-value=3.7  Score=36.60  Aligned_cols=150  Identities=11%  Similarity=0.012  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHhcCCC
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQ-EGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~  410 (581)
                      +..-+..+.+.|++..|.++..-.++.+.+. ....+    ......+..++.....-+ .=.++.++++....+. +..
T Consensus        56 L~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~~~~----~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~  129 (312)
T 2wpv_A           56 ISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EVKVD----DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEY  129 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCS----HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSC
T ss_pred             HHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCC
Confidence            3334455566777777777777777776663 11111    112244555554433222 2356777888877665 222


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHH--------HHHHHHHhcCC---CCcchHHHHHH-HHHHHHHcCChHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRI--------CLDIMTKTVGP---DDQSISFPMLH-LGITLYHLNRDKEAEK  478 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al~~~~~~~~~---~~~~~~~~~~~-la~~~~~~g~~~~A~~  478 (581)
                      .......+..+|..|...|++.+|..+|-.        ..++..+....   ..|.....+.. ....|...|+...|..
T Consensus       130 ~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~  209 (312)
T 2wpv_A          130 KFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHE  209 (312)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHH
Confidence            223345678899999999999999987731        11111111111   23333333332 2335667899999999


Q ss_pred             HHHHHHHHH
Q 008016          479 LVLEALYIR  487 (581)
Q Consensus       479 ~~~~a~~~~  487 (581)
                      .+....+..
T Consensus       210 ~~~~f~~~~  218 (312)
T 2wpv_A          210 SKDIFLERF  218 (312)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.56  E-value=0.95  Score=36.29  Aligned_cols=101  Identities=11%  Similarity=-0.011  Sum_probs=65.3

Q ss_pred             HHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008016          172 YVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGM  251 (581)
Q Consensus       172 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  251 (581)
                      ....|+++.|.++.+.+            .....|..+|......|+++-|+.+|+++-+.                ..+
T Consensus        15 AL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------------~~L   66 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHSF----------------DKL   66 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------------HHH
T ss_pred             HHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----------------HHH
Confidence            34679999998887653            11235889999999999999999999886432                233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          252 AKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       252 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                      ..+|...|+.++-.+.-+.+...      + +      ++....++...|+++++++.|.+.
T Consensus        67 ~~Ly~~tg~~e~L~kla~iA~~~------g-~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           67 SFLYLVTGDVNKLSKMQNIAQTR------E-D------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHT------T-C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHC------c-c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            45566677765544333332221      1 1      222345567788998888887654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.99  E-value=1.9  Score=41.29  Aligned_cols=140  Identities=11%  Similarity=0.125  Sum_probs=61.7

Q ss_pred             HHhccCHHHHHHHHHHHH--HHHHHHc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHHHHh-cCC
Q 008016          213 YSTLENYEKSMLVYQRVI--NVLESRY-GKTSILLVTSLLGMAKVLGSIGRAKKAVEI-------YHRVITILELN-RGT  281 (581)
Q Consensus       213 ~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~-~~~  281 (581)
                      +...+++++|..+-...+  +...... ..-+...+.+|+..+.++...|+.......       -...+...+.. +..
T Consensus       146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~  225 (523)
T 4b4t_S          146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH  225 (523)
T ss_dssp             ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence            456788888888776554  2221110 011234566777777777777776653321       11222222222 234


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      |....+..++.+-..|...+.++.|..+..++.      ++..   +...+..++.+|.++.-+++|.+|.+++..|+..
T Consensus       226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            455667788899999999999999999988773      1211   2345777888999999999999999999998875

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.54  E-value=5.7  Score=35.71  Aligned_cols=45  Identities=9%  Similarity=-0.093  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 008016          223 MLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIY  268 (581)
Q Consensus       223 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  268 (581)
                      ..+..+++....+. +.........+..+|..|.+.+++.+|..+|
T Consensus       115 ~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          115 KRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            33555565555442 2211222455667788888888888877776

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.44  E-value=0.92  Score=43.77  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..++..||.+......+..|..+|.+|..+        .|.....++.||.+....|+.-+|.-+|.+++..       .
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~  216 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------K  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------S
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------C
Confidence            356788999999999999999999999998        6788899999999999999999999999998853       1


Q ss_pred             CchHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKC  340 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~  340 (581)
                      .| ...+..++...+.
T Consensus       217 ~P-f~~a~~nL~~~f~  231 (497)
T 1ya0_A          217 FP-FPAASTNLQKALS  231 (497)
T ss_dssp             BC-CHHHHHHHHHHHH
T ss_pred             CC-ChhHHHHHHHHHH
Confidence            22 3445555555543

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.24  E-value=2.5  Score=40.50  Aligned_cols=143  Identities=10%  Similarity=-0.035  Sum_probs=62.2

Q ss_pred             HHHHcCChhHHHHHHHHHH--HHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHH----------HHHHHHHHHHhh
Q 008016          127 SMIMMGNKNDAIDLLQANY--EAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQ----------SLLDMMSGIVDS  194 (581)
Q Consensus       127 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----------~~~~~~~~~~~~  194 (581)
                      .++..+++++|.++....+  +.... +....-+.-.+.+|+..+.++...|+.....          ..+-.+.+.. .
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~-~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta-~  222 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCY-YNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIA-S  222 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHC-C
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHH-HhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH-h
Confidence            4577888999988777654  22211 1112224455667777777777777665432          1222222221 2


Q ss_pred             cCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          195 LKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      +..+....+.+++.+-+.|...+.+++|..+..++.-.  .. .......+..++.+|.++..+++|.+|.+++..|+..
T Consensus       223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk  299 (523)
T 4b4t_S          223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK  299 (523)
T ss_dssp             SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred             cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33455566778889999999999999999999887310  00 0123456788899999999999999999999998865

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.68  E-value=8.8  Score=34.22  Aligned_cols=142  Identities=11%  Similarity=-0.032  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .+.+...-+..|+|=+|...++.......+    .....+..+.++.-+..+...|++..|.++...+++.....+. .+
T Consensus        16 ~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~----~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~-~~   90 (312)
T 2wpv_A           16 TLQRFENKIKAGDYYEAHQTLRTIANRYVR----SKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV-KV   90 (312)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred             HHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CC
Confidence            333444444445555555544444333222    1112233334444455555666666666665555555443211 11


Q ss_pred             hHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYE-KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYH  269 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  269 (581)
                      . ......+..++.....-+ .=..+..+++....+. +.........+..+|..|...|++.+|..+|-
T Consensus        91 ~-~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           91 D-DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             S-HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            1 122344444443322111 2245666666665554 22112234667788999999999888887774

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.10  E-value=20  Score=39.14  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------HHHc--CCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Q 008016          288 LPLFSLGSLFIKEGKAVDAESVFSRILKIY-------------TKVY--GENDGRVGMAMCSLAHAKCANGNAEEAVELY  352 (581)
Q Consensus       288 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  352 (581)
                      ...+.+|.++...|++++|..+|+++-...             ....  ..........|..+..++.+.|.++.++++.
T Consensus       843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345789999999999999999998863210             0000  0011123456778888999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCh-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008016          353 KKALRVIKDSNYMSLDDS-IMENMRIDLAELLHIVGRGQEGRELLEE  398 (581)
Q Consensus       353 ~~al~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  398 (581)
                      +.|++..      .++++ .....+.++=..+...|+|++|...+..
T Consensus       923 ~lAi~~~------~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          923 LLADASK------ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHHHHC------CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHHHHhc------cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            9998862      33333 3334677788888999999999877643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.21  E-value=8  Score=33.36  Aligned_cols=123  Identities=15%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             HHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHH
Q 008016          425 YSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDC  504 (581)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  504 (581)
                      ..+.|+.++|++..+..++        .+|........+..+++-.|+++.|.+.++.+.++.     |+....+..|..
T Consensus         7 ll~~g~L~~al~~~~~~VR--------~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~-----p~~~~~a~~yr~   73 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-----PEYLPGASQLRH   73 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----GGGHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhhHHHHHHHH
Confidence            4677999999999988887        467778888889999999999999999999887754     222222222222


Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHH
Q 008016          505 LVSIQTRLGEDDTKLLELLKRVLRI--QEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRM  573 (581)
Q Consensus       505 la~~~~~~g~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~  573 (581)
                      +..+-.           .=.+.+.-  ....++ ..+. ......-+......|+.++|..+-.++.+..+
T Consensus        74 lI~aE~-----------~R~~vfaG~~~P~~~g-~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap  131 (273)
T 1zbp_A           74 LVKAAQ-----------ARKDFAQGAATAKVLG-ENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  131 (273)
T ss_dssp             HHHHHH-----------HHHHHTTSCCCEECCC-SCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHH-----------HHHHHHcCCCCCCCCC-CCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence            211110           00011100  000111 2233 33334445666778999999999999987643

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=88.09  E-value=4.2  Score=27.74  Aligned_cols=40  Identities=15%  Similarity=0.131  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (581)
                      +......++..|...-+.|++++|+.+|.++++.+...+.
T Consensus        15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk   54 (83)
T 2w2u_A           15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVS   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            3455566888999999999999999999999998777643

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.34  E-value=22  Score=34.32  Aligned_cols=80  Identities=14%  Similarity=0.038  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCC
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDS  495 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  495 (581)
                      .++..||++..-...++.|..+|.+|..+        .|.....++.||.+....|+.-+|.-+|.+++..       ..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~~  217 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------KF  217 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------SB
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------CC
Confidence            46778999999999999999999999996        6888899999999999999999999999988752       22


Q ss_pred             hhHHHHHHHHHHHHHH
Q 008016          496 LPVGEALDCLVSIQTR  511 (581)
Q Consensus       496 ~~~~~~~~~la~~~~~  511 (581)
                      | ...+..+|...+.+
T Consensus       218 P-f~~a~~nL~~~f~~  232 (497)
T 1ya0_A          218 P-FPAASTNLQKALSK  232 (497)
T ss_dssp             C-CHHHHHHHHHHHHH
T ss_pred             C-ChhHHHHHHHHHHH
Confidence            2 23556666666654

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=87.00  E-value=14  Score=31.74  Aligned_cols=183  Identities=9%  Similarity=0.057  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCC
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      .++..++..-+.++|++.+....++.+.       .....-...-.+.+..+|-. .|....+...+.......+.  ..
T Consensus        10 ~~v~~AkLaeqaeRyddm~~~mk~v~~~-------~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~--k~   80 (260)
T 1o9d_A           10 ENVYMAKLAEQAERYEEMVEFMEKVSNS-------LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RG   80 (260)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHT-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhc--cC
Confidence            3666777778889999999998887763       10011222233444444432 23333444444332222110  01


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc-----C-----CHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI-----G-----RAKKAV  265 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~  265 (581)
                      ....    ..+..-|. ..=-.+=...+...+.+....+   ..+....+..+-..|..|...     |     -.+.|.
T Consensus        81 ~~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~  155 (260)
T 1o9d_A           81 NEEH----VNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  155 (260)
T ss_dssp             CHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             cHHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence            1111    11111111 1111223334455555444332   111122333334445544422     2     235788


Q ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 008016          266 EIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKI  316 (581)
Q Consensus       266 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  316 (581)
                      ..|+.|.++....+.+.+|.......+.+..|+. .++.++|..+.+++..-
T Consensus       156 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          156 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8999999999877888898887777777777665 79999998887777654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=86.25  E-value=11  Score=29.73  Aligned_cols=178  Identities=11%  Similarity=0.021  Sum_probs=99.2

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH----------HH
Q 008016          378 DLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM----------TK  447 (581)
Q Consensus       378 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------~~  447 (581)
                      .++.++.-.|.+..++-++..             ..++.+.+.-+.||...+++..|+..++..++--          .+
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~  104 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ  104 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred             hhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence            466778889999988776543             1233455566779999999999999999987310          00


Q ss_pred             hcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH------HH-HcCCCChhHHHHHHHHHHHHHHcCCChHHHH
Q 008016          448 TVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIR------EI-AFGKDSLPVGEALDCLVSIQTRLGEDDTKLL  520 (581)
Q Consensus       448 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~  520 (581)
                      ..--+..+-...+..+|.++.+.|+.+||+.++.......      +. ++...-|...+-    -.+.. .|+.. --.
T Consensus       105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~----~~i~~-~~~~~-i~~  178 (242)
T 3kae_A          105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDK----ENVRQ-TGRRG-IEE  178 (242)
T ss_dssp             TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC----------------C-HHH
T ss_pred             eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccch----HHHHh-hhhcc-chh
Confidence            1111112233456678999999999999999998876532      00 000000100000    00000 01111 112


Q ss_pred             HHHHHHHHHHHHh-------cCCCCHHHHH-HHHHHHHHHHHcCChhhhHHHHHHHHHHHHH
Q 008016          521 ELLKRVLRIQERE-------FGSESEEVML-TLKKVVSYLDKLGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       521 ~~~~~a~~~~~~~-------~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~  574 (581)
                      +++....+.++.+       ....-|.... ....-+..|...|..++...+|....+..|.
T Consensus       179 ~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          179 EYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence            2333333333311       0011232222 2234577889999999999999988776553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.19  E-value=32  Score=35.14  Aligned_cols=123  Identities=13%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             cCC-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH--HH-hccCHHHHHHHHHHHHHHHHHHc---CCCC------
Q 008016          175 IGD-LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM--YS-TLENYEKSMLVYQRVINVLESRY---GKTS------  241 (581)
Q Consensus       175 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~------  241 (581)
                      .|+ ++.|+.+++++....       |... ++...+.+  .. ...+--+|+....++++......   ...+      
T Consensus       261 t~~~~~~a~~~le~L~~~~-------p~~~-~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKD-------PIHD-IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHC-------GGGH-HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhC-------Cchh-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            455 577888888865542       3221 11222221  11 22344567777777765332211   1111      


Q ss_pred             -HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008016          242 -ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI  313 (581)
Q Consensus       242 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  313 (581)
                       +.....+...+..+...|+++-|+.+.++|+..        .|....+|..|+.+|..+|+|+.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence             222345666788888999999999999999998        6777899999999999999999999777654

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.14  E-value=22  Score=33.16  Aligned_cols=133  Identities=10%  Similarity=0.002  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc----------CCCcchHHHH
Q 008016          136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL----------KDDEPLLDAI  205 (581)
Q Consensus       136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~~~~  205 (581)
                      .-+.+|+..+..+....     +|-.  ....+..+.....+.+++.+.++.........          .........+
T Consensus        57 ~~~~ly~~fi~~f~~ki-----n~L~--lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i  129 (393)
T 4b4t_O           57 LRLRLYDNFVSKFYDKI-----NQLS--VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLI  129 (393)
T ss_dssp             CCHHHHHHHHHHHHHHS-----CSHH--HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHhc-----CHHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHH
Confidence            34556666655544322     2221  11112345556788999999988764432111          0111234455


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      ...++..|...|+.++|...++++-.......+.+.......+...+..|...+++..+....-..+...
T Consensus       130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            6778999999999999999999998887776555555667777778888888999988776666655543

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=85.85  E-value=8.5  Score=28.36  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 008016          114 FERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (581)
Q Consensus       114 ~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (581)
                      +......++..|...-..|++++|+.+|..+++.+...+.....++.....+.....-|
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eY   72 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEY   72 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            44455568888888889999999999999999988776543334444444444444333

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=85.50  E-value=7  Score=26.89  Aligned_cols=38  Identities=5%  Similarity=0.030  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (581)
                      .....++..|...-..|++++|+.+|.++++.+...+.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk   51 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLK   51 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence            34455888888899999999999999999998777653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.37  E-value=15  Score=31.68  Aligned_cols=125  Identities=12%  Similarity=0.041  Sum_probs=76.2

Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHH
Q 008016          126 KSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAI  205 (581)
Q Consensus       126 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  205 (581)
                      ..+.+.|+.++|++.....++.          .|.++.....+...++-.|++++|..-++.+.++.    +.....+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~----p~~~~~a~~   70 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF----PEYLPGASQ   70 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----GGGHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----chhhHHHHH
Confidence            4567889999999988888876          78888888888999999999999999998877764    111111111


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINV--LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      |..+-.+          +..=.+.+.-  .....+. .+. -.....-+......|+.++|...-.++++...
T Consensus        71 yr~lI~a----------E~~R~~vfaG~~~P~~~g~-~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap  131 (273)
T 1zbp_A           71 LRHLVKA----------AQARKDFAQGAATAKVLGE-NEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  131 (273)
T ss_dssp             HHHHHHH----------HHHHHHHTTSCCCEECCCS-CHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHH----------HHHHHHHHcCCCCCCCCCC-CHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence            1111111          0000000000  0000111 122 22233335556668999999999999988753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.31  E-value=44  Score=35.07  Aligned_cols=200  Identities=13%  Similarity=0.172  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT--ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      ....++..+|.++...+  .++..++...+.......+.  .......+...||.++...++ +++.+.+...+.     
T Consensus       411 ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~-----  482 (963)
T 4ady_A          411 IKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY-----  482 (963)
T ss_dssp             HHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh-----
Confidence            45667777777776665  36777776666542100010  012223455678888777776 345555555543     


Q ss_pred             cCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          321 YGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       321 ~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                        .++.. ...+-..+|.++.-.|+-+-...++..+.+.        . +..+... ..+|..+...|+.+.+..+.+..
T Consensus       483 --dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~-~e~vrR~-aalgLGll~~g~~e~~~~li~~L  550 (963)
T 4ady_A          483 --NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------Q-HGNITRG-LAVGLALINYGRQELADDLITKM  550 (963)
T ss_dssp             --TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------S-CHHHHHH-HHHHHHHHTTTCGGGGHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------C-cHHHHHH-HHHHHHhhhCCChHHHHHHHHHH
Confidence              12222 1245567888888888876655555544321        1 2222222 34444555678877776665543


Q ss_pred             HHHHHHhcCCCChH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHH
Q 008016          400 LLITEKYKGKEHPS-FVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAE  477 (581)
Q Consensus       400 l~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  477 (581)
                      ...       .+|. ...+...+|..|...|+...-..++..+..        +..+..+....+|......|+.+.+.
T Consensus       551 ~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--------d~~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          551 LAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--------DSNDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             HHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             HhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--------CCcHHHHHHHHHHHHhhccCCHHHHH
Confidence            321       2232 223455678889999996555556666654        11122233334444455566654333

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=83.72  E-value=9.2  Score=26.79  Aligned_cols=54  Identities=6%  Similarity=0.057  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 008016          113 DFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDI  167 (581)
Q Consensus       113 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  167 (581)
                      .+......++..|...-..|++++|+.+|..+++.+...+...+ ++.....+..
T Consensus        10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~-~~~~k~~l~~   63 (93)
T 1wfd_A           10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK-ESSKRCVLRT   63 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence            33445566888898999999999999999999998877653332 3333334433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.40  E-value=39  Score=33.73  Aligned_cols=127  Identities=13%  Similarity=0.068  Sum_probs=76.8

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFV  415 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  415 (581)
                      +.......+.+.|...+......      ...+..........++.-....+...++...+.+....      .......
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  288 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQA------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLI  288 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhc------cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHHH
Confidence            33344455788888888765442      11233333334444554445555466677777654321      2223322


Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 008016          416 THLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALY  485 (581)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  485 (581)
                      .  ...+ .....|+++.|..+++..-.        .........+-+|..+...|+.++|..+|+++..
T Consensus       289 e--~~~r-~Alr~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          289 E--RRVR-MALGTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             H--HHHH-HHHHHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             H--HHHH-HHHHCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            2  2223 34466999999998866422        2234556778899999999999999999988754

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=82.20  E-value=23  Score=30.35  Aligned_cols=184  Identities=9%  Similarity=0.042  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGN-KGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLK  196 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~  196 (581)
                      ..++..++..-+.++|++.+....++.+.       +. ...-...-.+.+..+|-. .|....+...+.......+.  
T Consensus        29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~-------~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~--   99 (260)
T 2npm_A           29 ESNVYMAKLAEQAERYDEMAKYMKDVVEA-------RQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHS--   99 (260)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------cCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhc--
Confidence            34677788888899999999999887763       10 011222333444555533 23333344444332222110  


Q ss_pred             CCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc----------CCHHH
Q 008016          197 DDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI----------GRAKK  263 (581)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~----------g~~~~  263 (581)
                      .......    .+..-|. ..=-.+=...+...+.+....+   ..+....+..+-..|..|...          .-.+.
T Consensus       100 k~~~~~~----~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~  174 (260)
T 2npm_A          100 RNAEDAS----KMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAED  174 (260)
T ss_dssp             TTCHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cCcHHHH----HHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHH
Confidence            1111111    1111111 1111223334445555444321   111122233333444444322          22357


Q ss_pred             HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016          264 AVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY  317 (581)
Q Consensus       264 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  317 (581)
                      |...|++|.++. ..+.+.+|.......+.+..|+. .++.++|..+.+++.+-.
T Consensus       175 a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A  228 (260)
T 2npm_A          175 ALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMA  228 (260)
T ss_dssp             HHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            888999999999 77788888877777777777665 799999999888877654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=81.32  E-value=10  Score=25.79  Aligned_cols=38  Identities=16%  Similarity=0.039  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHh
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQIN  153 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~  153 (581)
                      .....++..|...-+.|++++|+.+|.++++.+...+.
T Consensus         9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk   46 (83)
T 2v6y_A            9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIV   46 (83)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            45556888899999999999999999999998777653

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.09  E-value=35  Score=31.72  Aligned_cols=108  Identities=6%  Similarity=-0.035  Sum_probs=76.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHcCC---------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Q 008016          294 GSLFIKEGKAVDAESVFSRILKIYTKVYGE---------NDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNY  364 (581)
Q Consensus       294 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  364 (581)
                      ..+.....+.++|.+++++...........         .......+...++..|...|+.++|..+++++-......  
T Consensus        83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~--  160 (393)
T 4b4t_O           83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKK--  160 (393)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHS--
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcc--
Confidence            445667788999999988765443332211         112355667788999999999999999999998887763  


Q ss_pred             CCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 008016          365 MSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLIT  403 (581)
Q Consensus       365 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  403 (581)
                      .+.++......+...+..+...+++..+....-..+...
T Consensus       161 ~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~  199 (393)
T 4b4t_O          161 DSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL  199 (393)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence            334455666666777888888899988766665555443

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=80.28  E-value=25  Score=29.40  Aligned_cols=181  Identities=11%  Similarity=0.012  Sum_probs=101.4

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCcch
Q 008016          123 NEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDEPL  201 (581)
Q Consensus       123 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~  201 (581)
                      ..|...-+.++|++.+....++.+.....   +  ..-...-.+.+..+|-. .|....+...+.......    .....
T Consensus        11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~---~--~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke----k~~~~   81 (227)
T 2o8p_A           11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE---N--SEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ----LNNDE   81 (227)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---T--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CSCHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhhcc---C--CCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH----cCCHH
Confidence            56777788999999999988887621111   1  11122233444444432 233333433333322211    11111


Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHH
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~  276 (581)
                      .    ..+..-|.. .=-.+-...+...+.+.....-+.....+..+-..|..|.     ..|+.+.|...|+.|.++..
T Consensus        82 ~----~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~  156 (227)
T 2o8p_A           82 L----VKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC  156 (227)
T ss_dssp             H----HHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence            1    112222211 1112334455666666655544433333333444454443     35778999999999999998


Q ss_pred             HhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIY  317 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~  317 (581)
                      ..+.+.+|.......+.+..|. -.++.++|..+.+++..+.
T Consensus       157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~  198 (227)
T 2o8p_A          157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL  198 (227)
T ss_dssp             HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            7677778876666666665554 5799999999999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-10
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	3e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.002
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.004

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 52/378 (13%), Positives = 125/378 (33%), Gaps = 22/378 (5%)

Query: 115 ERQLLELFNEVKSMIMM--GNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY 172
           E  +   FN +++ + +  GN ++A  L +    A+  +          +    ++    
Sbjct: 7   EDTMHAEFNALRAQVAINDGNPDEAERLAK---LAL--EELPPGWFYSRIVATSVLGEVL 61

Query: 173 VYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV 232
              G+L    +L+     +          L +++     +       + +    ++   +
Sbjct: 62  HCKGELTRSLALMQQTEQMARQHDVWHYALWSLI-QQSEILFAQGFLQTAWETQEKAFQL 120

Query: 233 LESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFS 292
           +  ++ +   +    +   A++L +  R  +A       I +L   +  +       L  
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC---LAM 177

Query: 293 LGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELY 352
           L    +  G   +A S  +R+  +       +   +  A           G+   A    
Sbjct: 178 LIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWL 236

Query: 353 KKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP 412
           +   +    +N+       ++    ++A    ++G  +    +LEE          +   
Sbjct: 237 RHTAKPEFANNH------FLQGQWRNIARAQILLGEFEPAEIVLEELNEN--ARSLRLMS 288

Query: 413 SFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP-MLHLGITLYHLN 471
               +LL L   Y ++    +A+R+L   L +  +T       I    M      L  LN
Sbjct: 289 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 348

Query: 472 RDKEAEKLVLEALYIREI 489
              E E+   + + +REI
Sbjct: 349 TLPELEQHRAQRI-LREI 365

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 37/303 (12%), Positives = 78/303 (25%), Gaps = 11/303 (3%)

Query: 82  HHLSSGFSAPNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLL 141
             L        +  RS  L   +  +    + +   L  L  + + +   G    A +  
Sbjct: 55  SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 114

Query: 142 QANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL 201
           +  ++          +      ++ I A        L   ++        ++ L   +P 
Sbjct: 115 EKAFQL--INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---IEVLSSYQPQ 169

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
                L M    S       +       +  L       S  +  +           G  
Sbjct: 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
             A             N       L     ++    I  G+   AE V   + +    + 
Sbjct: 230 AAAANWLRHTAKPEFANN----HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL- 284

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                 +   +  L       G   +A  +   AL++   + ++S      E M   L +
Sbjct: 285 -RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 343

Query: 382 LLH 384
           L+ 
Sbjct: 344 LIQ 346

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 50/264 (18%)

Query: 208 HMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEI 267
           ++G +++       ++  +++ + +  +         + + + +  VL       +AV  
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPN--------FLDAYINLGNVLKEARIFDRAVAA 225

Query: 268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR 327
           Y R +++        S +  +   +L  ++ ++G    A   + R +++           
Sbjct: 226 YLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPH 269

Query: 328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVG 387
              A C+LA+A    G+  EA + Y  ALR                +   +LA +    G
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALR----------LCPTHADSLNNLANIKREQG 319

Query: 388 RGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTK 447
             +E   L  + L +         P F     NLA+   +     EA    +  + I   
Sbjct: 320 NIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 368

Query: 448 TVGPDDQSISFPMLHLGITLYHLN 471
                  + +    ++G TL  + 
Sbjct: 369 -----SPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 42/236 (17%)

Query: 251 MAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVF 310
           +  V  + G    A+  + + +T+          + +    +LG++  +      A + +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 311 SRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDS 370
            R L +             +   +LA      G  + A++ Y++A+ +            
Sbjct: 227 LRALSLSPNHA--------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-------- 270

Query: 371 IMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKN 430
              +   +LA  L   G   E  +     L        +  P+    L NLA       N
Sbjct: 271 --PDAYCNLANALKEKGSVAEAEDCYNTAL--------RLCPTHADSLNNLANIKREQGN 320

Query: 431 FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYI 486
             EA RL R  L++            +    +L   L    + +EA     EA+ I
Sbjct: 321 IEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 41/327 (12%), Positives = 102/327 (31%), Gaps = 24/327 (7%)

Query: 31  QNGRTHFPICLQMQKCKVKLYMIPCKAIVRFWALKRFASVGSLEVDTEDQKHHLSSGFSA 90
                +  +    ++       I                  +L            +  + 
Sbjct: 65  LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124

Query: 91  PNDFARSKTLHDHSSNLWDGMNDFERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKE 150
            +    +  L+   S+L + +    R        +K++    N   A   L   + A  E
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 151 QINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMG 210
              A +   + V +       Y+ +G++     + D             P    +  ++ 
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 211 SMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHR 270
            +Y      + ++  Y+R I +              +   +A  L   G   +A + Y+ 
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 271 VITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGM 330
            + +   +  +          +L ++  ++G   +A  ++ + L+++ +           
Sbjct: 297 ALRLCPTHADSL--------NNLANIKREQGNIEEAVRLYRKALEVFPEFA--------A 340

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALR 357
           A  +LA      G  +EA+  YK+A+R
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
              L     + G    AE    ++ +      G         +  L+         + + 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTG--------VLLLLSSIHFQCRRLDRSA 53

Query: 350 ELYKKALR 357
                A++
Sbjct: 54  HFSTLAIK 61

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 30/280 (10%), Positives = 70/280 (25%), Gaps = 45/280 (16%)

Query: 202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRA 261
             A         +     E +   Y +++  L + +    +        +  +       
Sbjct: 78  NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF-NVDLPCRVKSSQLGIISNKQTHT 136

Query: 262 KKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVY 321
              V+      +                L  LG +     +   AES +    ++     
Sbjct: 137 SAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL----- 181

Query: 322 GENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAE 381
                  G     LA    + G+    +  Y +++ V           +   N++     
Sbjct: 182 ---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQK---- 228

Query: 382 LLHIVGRGQEGRELLEECLLITEKYKGKE-HPSFVTHLLNLAASYSRSKNFVEAERLLRI 440
                         L + L   ++ K K     F+   +        SK+  +   L   
Sbjct: 229 -------------ALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275

Query: 441 CLDIMTKTV--GPDDQSISFPMLHLGITLYHLNRDKEAEK 478
             +   + +     +      +  + +   H  RD   E 
Sbjct: 276 LEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNET 315

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 290 LFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAV 349
           L++ G L   +     A   FS +   ++++             ++        N  EA 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-----------FNIGCMYTILKNMTEAE 56

Query: 350 ELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK 409
           + + +++   K          ++          +  +   +E    L    LI  K  G 
Sbjct: 57  KAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL---KEALIQLRGNQLIDYKILGL 113

Query: 410 EHPSFVTHLL-NLAASYSRSKNFVEAERLLRICLDI 444
           +   F   +L N+A  Y++ + + +AE  L +   +
Sbjct: 114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 41/321 (12%), Positives = 89/321 (27%), Gaps = 33/321 (10%)

Query: 195 LKDDEPLLDA-ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAK 253
            +++ PL D       G       +   ++L+++  +   + ++       + +   +  
Sbjct: 10  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPKH-------MEAWQYLGT 61

Query: 254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRI 313
                 +   A+    R + +   N+    A  V            E          +  
Sbjct: 62  TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121

Query: 314 LKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI-- 371
             +     G     +G +   L      +    E  EL+  A+R+   S    +   +  
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLS-DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180

Query: 372 -----------------MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF 414
                              ++R +   L + +G         EE +    +   +  P +
Sbjct: 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGY 239

Query: 415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP---MLHLGITLYHLN 471
           +    NL  S        EA       L++  K+ GP  +  +        L + L  L 
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLG 299

Query: 472 RDKEAEKLVLEALYIREIAFG 492
           +           L      FG
Sbjct: 300 QSDAYGAADARDLSTLLTMFG 320

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 26/134 (19%), Positives = 36/134 (26%), Gaps = 20/134 (14%)

Query: 331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSI--------MENMRID---- 378
           A  +      A G  E+A      ALR  +      L D          +   ++     
Sbjct: 13  AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTA 72

Query: 379 LAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL 438
            AE     GR       LE            EHP        L  +Y  S    +A    
Sbjct: 73  KAEAEIACGRASAVIAELEALT--------FEHPYREPLWTQLITAYYLSDRQSDALGAY 124

Query: 439 RICLDIMTKTVGPD 452
           R     +   +G D
Sbjct: 125 RRVKTTLADDLGID 138

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 25/147 (17%)

Query: 341 ANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL 400
           + G  ++A+EL  +A++        SL        R    ELL I G  +   E L + +
Sbjct: 8   SEGQLQQALELLIEAIK--ASPKDASL--------RSSFIELLCIDGDFERADEQLMQSI 57

Query: 401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM 460
                   K  P ++     L      ++   +  +                +       
Sbjct: 58  --------KLFPEYLPGASQLRHLVKAAQARKDFAQGAA-------TAKVLGENEELTKS 102

Query: 461 LHLGITLYHLNRDKEAEKLVLEALYIR 487
           L            ++  +L L+   +R
Sbjct: 103 LVSFNLSMVSQDYEQVSELALQIEELR 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.93
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.9
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.75
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.74
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.72
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.71
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.69
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.38
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.37
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.36
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.31
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.3
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.3
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.22
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.21
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.17
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.15
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.04
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.03
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.95
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.79
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.59
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.36
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.49
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.48
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.13
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.21
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	92.2
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.17
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	87.22
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	87.11
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	87.07
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	86.4
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	85.24
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	84.25

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-31  Score=256.43  Aligned_cols=361  Identities=17%  Similarity=0.168  Sum_probs=296.9

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      ++..|..+++.|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..++++++..       |
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p   64 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQ----------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------P   64 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------C
Confidence            346788899999999999999999987          77788899999999999999999999999998764       4


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH-------------cCCCC-------------HHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESR-------------YGKTS-------------ILLVTSLLGMAKV  254 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~~-------------~~~~~~~~~la~~  254 (581)
                      ....++..+|.+|...|++++|+..+.++.......             .....             ..........+..
T Consensus        65 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (388)
T d1w3ba_          65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL  144 (388)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            556788999999999999999999999987752110             00000             0001123334455


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 008016          255 LGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCS  334 (581)
Q Consensus       255 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  334 (581)
                      ....+....+...+.+.+..        .|....++..+|..+...|++++|...++++++.        +|....++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~  208 (388)
T d1w3ba_         145 LKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYIN  208 (388)
T ss_dssp             HHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             ccccchhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--------CcccHHHHHH
Confidence            55666666777666666655        5666788999999999999999999999999986        4566778999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHH
Q 008016          335 LAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSF  414 (581)
Q Consensus       335 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  414 (581)
                      +|.++...|++++|+..++++...       .+..   ...+..+|.++...|++++|+..|++++++        .|..
T Consensus       209 l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~  270 (388)
T d1w3ba_         209 LGNVLKEARIFDRAVAAYLRALSL-------SPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHF  270 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSC
T ss_pred             HhhhhhccccHHHHHHHHHHhHHH-------hhhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCC
Confidence            999999999999999999998876       2222   445688999999999999999999999876        3445


Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016          415 VTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (581)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (581)
                      ..++..+|.++...|++++|+..+++++..        .|.....+..++.++...|++++|+..|++++++        
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------  334 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRL--------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------  334 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence            568899999999999999999999998874        4566778899999999999999999999999864        


Q ss_pred             ChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 008016          495 SLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGR  557 (581)
Q Consensus       495 ~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  557 (581)
                      +|+...++..+|.++...|+++ +|+..|++++++        +|+...++.++|.+|.++|+
T Consensus       335 ~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~l--------~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQGKLQ-EALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCH-HHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Confidence            3555688999999999999999 999999999874        45667889999999999886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-28  Score=236.10  Aligned_cols=346  Identities=17%  Similarity=0.173  Sum_probs=277.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 008016          167 IIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVT  246 (581)
Q Consensus       167 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  246 (581)
                      .+|..++..|++++|+..++++++..       |....++..+|.++...|++++|+..++++++..        |....
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~   68 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQE-------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------PLLAE   68 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHH
Confidence            57888999999999999999987764       4445678999999999999999999999999862        33467


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-------------C-------------CChhhHHHHHHHHHHHHHc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG-------------T-------------ESADLVLPLFSLGSLFIKE  300 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~-------------~~~~~~~~~~~la~~~~~~  300 (581)
                      ++..+|.+|...|++++|+..+..+.........             .             ..+.........+......
T Consensus        69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (388)
T d1w3ba_          69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL  148 (388)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999988775211000             0             0000111223344444555


Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHH
Q 008016          301 GKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLA  380 (581)
Q Consensus       301 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la  380 (581)
                      +....+...+.+.+..        .|....++..+|..+...|++++|...++++++.       .|+.   ..++..+|
T Consensus       149 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~p~~---~~~~~~l~  210 (388)
T d1w3ba_         149 GRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-------DPNF---LDAYINLG  210 (388)
T ss_dssp             SCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------CTTC---HHHHHHHH
T ss_pred             chhhhhHHHHHHhhcc--------CcchhHHHHhhcccccccCcHHHHHHHHHHHHHh-------Cccc---HHHHHHHh
Confidence            5566666666555543        4556678889999999999999999999999986       2333   45678899


Q ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 008016          381 ELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPM  460 (581)
Q Consensus       381 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  460 (581)
                      .++...|++++|+..++++....        +.....+..+|.++...|++++|+..|++++++        +|....++
T Consensus       211 ~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~  274 (388)
T d1w3ba_         211 NVLKEARIFDRAVAAYLRALSLS--------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--------QPHFPDAY  274 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------CSSCHHHH
T ss_pred             hhhhccccHHHHHHHHHHhHHHh--------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHH
Confidence            99999999999999999987762        334567888999999999999999999999984        56677889


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 008016          461 LHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEE  540 (581)
Q Consensus       461 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~  540 (581)
                      ..+|.++...|++++|+..+++++...        |.....+..++.++...|+++ +|+..|++++++        .|+
T Consensus       275 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~al~~--------~p~  337 (388)
T d1w3ba_         275 CNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIE-EAVRLYRKALEV--------FPE  337 (388)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHH-HHHHHHHHHTTS--------CTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhccC--------CccchhhhHHHHHHHHCCCHH-HHHHHHHHHHHh--------CCC
Confidence            999999999999999999999987643        444577889999999999999 999999999873        456


Q ss_pred             HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHhhh
Q 008016          541 VMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYKQK  578 (581)
Q Consensus       541 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~~~  578 (581)
                      ...++..+|.+|...|++++|+..|++++++.|++.+.
T Consensus       338 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a  375 (388)
T d1w3ba_         338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA  375 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            67889999999999999999999999999988766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.6e-22  Score=187.80  Aligned_cols=342  Identities=13%  Similarity=0.039  Sum_probs=276.4

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          120 ELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       120 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ...-+|..+...|++++|+.+++++++..+     ....+....++..+|.++...|++++|+..++++....... ++.
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~-----~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~   87 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELP-----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVW   87 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cch
Confidence            345578888999999999999999987621     12233456688999999999999999999999999887653 455


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNR  279 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  279 (581)
                      +.....+..++..+...|++..|...+.+++.+.........+....++..+|.++...|+++.+...+.+++...... 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-  166 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-  166 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh-
Confidence            6677788999999999999999999999999998887777777778889999999999999999999999999875442 


Q ss_pred             CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 008016          280 GTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVI  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  359 (581)
                        .......++..++..+...|++.++...+.++....... ....+.....+..++.++...|++++|...+++++.. 
T Consensus       167 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-  242 (366)
T d1hz4a_         167 --QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-  242 (366)
T ss_dssp             --CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-
T ss_pred             --hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-
Confidence              344566788889999999999999999999999887654 2334456677888999999999999999999987764 


Q ss_pred             HhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 008016          360 KDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLR  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (581)
                           ...++......+.++|.++...|++++|...+++++......  ...+....++..+|.+|..+|++++|++.++
T Consensus       243 -----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         243 -----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             -----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                 233445556677889999999999999999999999988765  5677888999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC-CcchHHHHHHHHHHHHHcCChHHHHHH
Q 008016          440 ICLDIMTKTVGPD-DQSISFPMLHLGITLYHLNRDKEAEKL  479 (581)
Q Consensus       440 ~al~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  479 (581)
                      +++++..+..... .......+..+...+...++.+++...
T Consensus       316 ~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         316 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            9999876642110 011223344555566677877777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.7e-22  Score=189.39  Aligned_cols=345  Identities=10%  Similarity=-0.037  Sum_probs=279.4

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGT  281 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  281 (581)
                      .+......|.++...|++++|+.+++++++..+.   .+.+....++..+|.++...|++++|+..+++++++....  +
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~---~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~--~   85 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP---GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--D   85 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--T
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC---CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--c
Confidence            3455666799999999999999999999886421   2334456789999999999999999999999999987663  4


Q ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          282 ESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       282 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      +.+....++..++.++...|++..|...+.+++.+.........+.....+..+|.++...|+++.|...+.++......
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            55677788999999999999999999999999999888766777778888899999999999999999999999987543


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRIC  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (581)
                           .........+...+..+...|++.++...+.++....... +...+.....+..++.++...|++++|...++++
T Consensus       166 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  239 (366)
T d1hz4a_         166 -----YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  239 (366)
T ss_dssp             -----SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             -----hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-cccCchHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                 2233445667889999999999999999999999887654 3344556677888999999999999999999988


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHH
Q 008016          442 LDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLE  521 (581)
Q Consensus       442 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~  521 (581)
                      +..    ....++.....+.++|.++...|++++|...+++++......  ..+|....++..+|.+|...|+++ +|++
T Consensus       240 ~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~-~A~~  312 (366)
T d1hz4a_         240 AKP----EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKS-DAQR  312 (366)
T ss_dssp             CCC----CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHH-HHHH
T ss_pred             HHh----ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHH-HHHH
Confidence            763    223345566678889999999999999999999999987764  566788899999999999999999 9999


Q ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCChhhhHHH
Q 008016          522 LLKRVLRIQEREFGSE-SEEVMLTLKKVVSYLDKLGRKEEKFPL  564 (581)
Q Consensus       522 ~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~  564 (581)
                      .+++++++.++.-... .......+..+...+...|+.+++...
T Consensus       313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            9999999877642110 011123444555666777888888764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-22  Score=184.80  Aligned_cols=283  Identities=16%  Similarity=0.147  Sum_probs=214.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      .+..|..+...|++++|+..|+++++.        .|....++..+|.++...|++++|+..+.+++++        .|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--------KPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--------ccc
Confidence            467899999999999999999999974        3445788999999999999999999999999988        566


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-chHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND-GRVGM------AMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....+..+|.+|...|++++|...+++++........... .....      ........+...+.+.+|...+.+++..
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999875321100000 00000      1111222344556788899999998876


Q ss_pred             HHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHH
Q 008016          359 IKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLL  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (581)
                      .       |+.. ...++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|
T Consensus       166 ~-------p~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         166 D-------PTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             S-------TTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             h-------hccc-ccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHH
Confidence            2       2222 1346688999999999999999999999876        2445678999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC---ChhHHHHHHHHHHHHHHcCCC
Q 008016          439 RICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD---SLPVGEALDCLVSIQTRLGED  515 (581)
Q Consensus       439 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~  515 (581)
                      ++++++        +|....++..+|.+|...|++++|+..|++++++.....+..   .......+..++.++...|+.
T Consensus       230 ~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         230 RRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             HHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHH--------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence            999985        466678899999999999999999999999999875332211   112224556778888888887


Q ss_pred             hHHHHHHHHHHHHH
Q 008016          516 DTKLLELLKRVLRI  529 (581)
Q Consensus       516 ~~~A~~~~~~a~~~  529 (581)
                      + .+.....+.+..
T Consensus       302 d-~~~~~~~~~l~~  314 (323)
T d1fcha_         302 D-AYGAADARDLST  314 (323)
T ss_dssp             G-GHHHHHTTCHHH
T ss_pred             H-HHHHHHHhCHHH
Confidence            7 554444444433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-22  Score=185.52  Aligned_cols=284  Identities=14%  Similarity=0.054  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .+..|..++..|++++|+..|+++++.          .|..+.++..+|.++...|++++|+..+.+++.+.       |
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p   84 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------P   84 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------c
Confidence            457899999999999999999999987          78889999999999999999999999999998874       4


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH-H------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI-L------LVTSLLGMAKVLGSIGRAKKAVEIYHRVIT  273 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~  273 (581)
                      .....+..+|.+|...|++++|+..+++++............ .      ...........+...+.+.+|...+.+++.
T Consensus        85 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_          85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            445678999999999999999999999998753221000000 0      011111222344556778899999999887


Q ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 008016          274 ILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYK  353 (581)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  353 (581)
                      ..     ++ .....++..+|.++...|++++|+..+++++..        .|....++..+|.++...|++++|+..|+
T Consensus       165 ~~-----p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         165 LD-----PT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HS-----TT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             Hh-----hc-ccccccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhcccccccchhHHHHHH
Confidence            62     22 223567889999999999999999999999876        45567889999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHccC
Q 008016          354 KALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGK---EHPSFVTHLLNLAASYSRSKN  430 (581)
Q Consensus       354 ~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~  430 (581)
                      +++++       .|+.   ..++.++|.+|...|++++|+..|++++++.....+.   .......++..++.++...|+
T Consensus       231 ~al~~-------~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~  300 (323)
T d1fcha_         231 RALEL-------QPGY---IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  300 (323)
T ss_dssp             HHHHH-------CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-------hhcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence            99986       2333   4567899999999999999999999999987543221   111122355667777777777


Q ss_pred             HHHHHHHHHHHHHHH
Q 008016          431 FVEAERLLRICLDIM  445 (581)
Q Consensus       431 ~~~A~~~~~~al~~~  445 (581)
                      .+.+...-.+.++..
T Consensus       301 ~d~~~~~~~~~l~~l  315 (323)
T d1fcha_         301 SDAYGAADARDLSTL  315 (323)
T ss_dssp             GGGHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCHHHH
Confidence            766655555544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.3e-18  Score=157.06  Aligned_cols=262  Identities=10%  Similarity=-0.037  Sum_probs=209.5

Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGK-AVDAESVFSRILKIYTK  319 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~  319 (581)
                      .|....++..+|.++...+.+++|+..+++++++        +|....+++..|.++...|+ +++|+..++++++.   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            4678899999999999999999999999999998        78889999999999999874 99999999999987   


Q ss_pred             HcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008016          320 VYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEEC  399 (581)
Q Consensus       320 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  399 (581)
                           +|....++.++|.++...|++++|+..+.+++++       .|..   ..++.++|.++...|++++|+..++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-------dp~n---~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-------DAKN---YHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------CTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-------hhcc---hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                 5777899999999999999999999999999997       2333   567799999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCCh
Q 008016          400 LLITEKYKGKEHPSFVTHLLNLAASYSRSKN------FVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRD  473 (581)
Q Consensus       400 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  473 (581)
                      +++        +|....++.++|.++...+.      +++|+..+.+++.+        .|....++..++.++... ..
T Consensus       173 l~~--------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~-~~  235 (315)
T d2h6fa1         173 LKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR-GL  235 (315)
T ss_dssp             HHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT-CG
T ss_pred             HHH--------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhc-Ch
Confidence            987        45566789999999887766      68899999999885        566677888888876554 46


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 008016          474 KEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--GEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSY  551 (581)
Q Consensus       474 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  551 (581)
                      .++...+.+++++.     +++ .....+..++.++...  ++.+ .+...+.+++++........+|-....|..++..
T Consensus       236 ~~~~~~~~~~~~l~-----~~~-~~~~~~~~l~~~y~~~~~~~~~-~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PSH-SSPYLIAFLVDIYEDMLENQCD-NKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TTC-CCHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CCc-CCHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88888888887754     332 2234566677776543  6666 7888888888876554333344334444444444


Q ss_pred             H
Q 008016          552 L  552 (581)
Q Consensus       552 ~  552 (581)
                      +
T Consensus       309 l  309 (315)
T d2h6fa1         309 L  309 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.1e-18  Score=155.37  Aligned_cols=261  Identities=11%  Similarity=0.016  Sum_probs=206.4

Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIG-RAKKAVEIYHRVITILEL  277 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~  277 (581)
                      .|....++..+|.++...+.+++|+..+++++.+.        |....+++.+|.++...| ++++|+..++++++.   
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~---  107 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN--------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---  107 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence            47788899999999999999999999999999972        445788999999999987 599999999999998   


Q ss_pred             hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          278 NRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       278 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                           +|....++..+|.++...|++++|+..+.+++++        +|....++.++|.++...|++++|+..++++++
T Consensus       108 -----~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--------dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         108 -----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             -----HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--------hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 6778999999999999999999999999999987        566778999999999999999999999999999


Q ss_pred             HHHhhccCCCCChHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016          358 VIKDSNYMSLDDSIMENMRIDLAELLHIVGR------GQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (581)
                      +       .|.+   ..++.++|.++...+.      +++|+..+.+++..        .|....++..++.++... ..
T Consensus       175 ~-------~p~n---~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--------~P~~~~~~~~l~~ll~~~-~~  235 (315)
T d2h6fa1         175 E-------DVRN---NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDR-GL  235 (315)
T ss_dssp             H-------CTTC---HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTT-CG
T ss_pred             H-------CCcc---HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--------CCCchHHHHHHHHHHHhc-Ch
Confidence            7       2333   4567899999888877      57888888888877        345556788888886654 45


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH--LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  508 (581)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  508 (581)
                      +++...+++++++.     ++ +.....+..++.+|..  .++.+.+...+.+++++.......-+|.....+..++..
T Consensus       236 ~~~~~~~~~~~~l~-----~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         236 SKYPNLLNQLLDLQ-----PS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS  308 (315)
T ss_dssp             GGCHHHHHHHHHHT-----TT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-----CC-cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            88888888887752     22 2334456667777654  367778888888888876554323334333334444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.8e-16  Score=141.77  Aligned_cols=225  Identities=12%  Similarity=0.044  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (581)
                      +..+...|.+|...|++++|.+.|.+++++..+.  .+.+..+.++.++|.+|...|++++|+.++++++++....    
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~----  110 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----  110 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc----
Confidence            4456677899999999999999999999998775  5566788999999999999999999999999999998873    


Q ss_pred             CCChHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          367 LDDSIMENMRIDLAELLHI-VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      ........++..+|.++.. .|++++|+.+|++++.+....  ...+....++.++|.++..+|++++|+..|++++...
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            4556667788999999866 699999999999999988764  4456667889999999999999999999999998853


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHc--CCChHHHHHHH
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRL--GEDDTKLLELL  523 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~~A~~~~  523 (581)
                      ... ..........+...+.++...|++..|...++++.++.....  + ......+..+..++...  +.+. +|+..|
T Consensus       189 ~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~--~-sre~~~l~~l~~a~~~~d~e~~~-eai~~y  263 (290)
T d1qqea_         189 MGN-RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA--D-SRESNFLKSLIDAVNEGDSEQLS-EHCKEF  263 (290)
T ss_dssp             SSC-TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHH-HHHHHH
T ss_pred             ccc-hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc--c-hHHHHHHHHHHHHHHhcCHHHHH-HHHHHH
Confidence            221 111233345567888899999999999999999877653221  1 11123445566555442  2234 555544


Q ss_pred             H
Q 008016          524 K  524 (581)
Q Consensus       524 ~  524 (581)
                      .
T Consensus       264 ~  264 (290)
T d1qqea_         264 D  264 (290)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.8e-16  Score=143.03  Aligned_cols=228  Identities=12%  Similarity=0.093  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTE  282 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  282 (581)
                      +..+...|.+|...|++++|+..|.+++++....  .+.+..+.++.++|.+|...|++++|+..+++++++....  ++
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~--~~  112 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQ  112 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc--cc
Confidence            4567778999999999999999999999998764  4556788999999999999999999999999999998764  34


Q ss_pred             ChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          283 SADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       283 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      ......++..+|.+|.. .|++++|+.++++++++....  ...+....++.++|.++...|++++|+..|++++.....
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            55667788899998865 699999999999999988764  444557788999999999999999999999999887443


Q ss_pred             hccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 008016          362 SNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR--SKNFVEAERLLR  439 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~  439 (581)
                      .   ..........+...+.++...|+++.|...+++++++.....   .......+..++..+..  .+.+++|+..|.
T Consensus       191 ~---~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~---~sre~~~l~~l~~a~~~~d~e~~~eai~~y~  264 (290)
T d1qqea_         191 N---RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA---DSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (290)
T ss_dssp             C---TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             c---hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc---chHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1   112333445567888899999999999999999877643221   11112344556555554  345788887776


Q ss_pred             HHH
Q 008016          440 ICL  442 (581)
Q Consensus       440 ~al  442 (581)
                      ++.
T Consensus       265 ~~~  267 (290)
T d1qqea_         265 NFM  267 (290)
T ss_dssp             TSS
T ss_pred             HHh
Confidence            543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3e-16  Score=139.64  Aligned_cols=226  Identities=15%  Similarity=0.053  Sum_probs=157.8

Q ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (581)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (581)
                      ++.+.|+..+++++...    ...++..+.+++.+|.+|...|++++|+..|++++++        +|..+.+++.+|.+
T Consensus        13 ~~~e~al~~~~e~l~~~----~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~   80 (259)
T d1xnfa_          13 LQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIY   80 (259)
T ss_dssp             HHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh----hcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchH
Confidence            34556666666655421    1234567889999999999999999999999999998        56678899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          297 FIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       297 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      |...|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++.       .|....   ..
T Consensus        81 ~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~---~~  142 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPF---RS  142 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHH---HH
T ss_pred             HHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-------ccccHH---HH
Confidence            99999999999999999987        4455678999999999999999999999999987       233322   23


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcch
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSI  456 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  456 (581)
                      ..++..+...+..+.+.........     .....+........++. ....+..+.+...+......        .+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~  208 (259)
T d1xnfa_         143 LWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHL  208 (259)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhc-----cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------Cccc
Confidence            4455666666655544444333222     12222222211111111 11122344444444443332        3455


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          457 SFPMLHLGITLYHLNRDKEAEKLVLEALYI  486 (581)
Q Consensus       457 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  486 (581)
                      ..++..+|.++...|++++|+.+|++++..
T Consensus       209 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         209 SETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            668889999999999999999999999863

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=2.7e-17  Score=152.33  Aligned_cols=275  Identities=10%  Similarity=-0.026  Sum_probs=210.1

Q ss_pred             HHHHHHcCC-hhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHHHh
Q 008016          125 VKSMIMMGN-KNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY----------IGDLKFVQSLLDMMSGIVD  193 (581)
Q Consensus       125 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~  193 (581)
                      .......|. .++|+++++++++.          +|+...+++..+.++..          .|++++|+.++++++... 
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~----------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-  103 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-  103 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-
Confidence            333445555 48999999999987          77777777666655443          344677888888776653 


Q ss_pred             hcCCCcchHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008016          194 SLKDDEPLLDAILLHMGSMYSTLEN--YEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRV  271 (581)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  271 (581)
                            |....++..+|.++...++  +++|+..+++++...       +..........|.++...|.+++|+..++++
T Consensus       104 ------pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~  170 (334)
T d1dcea1         104 ------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (334)
T ss_dssp             ------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             ------CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-------chhhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence                  5556678888888877664  889999999999862       1122333567789999999999999999998


Q ss_pred             HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Q 008016          272 ITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVEL  351 (581)
Q Consensus       272 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  351 (581)
                      +..        +|....++..+|.++...|++++|...+.+++.+....            ......+...+..+++...
T Consensus       171 i~~--------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~~  230 (334)
T d1dcea1         171 ITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------LELVQNAFFTDPNDQSAWF  230 (334)
T ss_dssp             TTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHHH
T ss_pred             HHc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------HHHHHHHHHhcchhHHHHH
Confidence            876        67778899999999999999999999888888774322            1233345566788889999


Q ss_pred             HHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCH
Q 008016          352 YKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNF  431 (581)
Q Consensus       352 ~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  431 (581)
                      +.+++..       .+....   .+..++.++...|++.+|+..+.+++.        .+|....++..+|.++...|++
T Consensus       231 ~~~~l~~-------~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~  292 (334)
T d1dcea1         231 YHRWLLG-------RAEPLF---RCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYE  292 (334)
T ss_dssp             HHHHHHS-------CCCCSS---SCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGH
T ss_pred             HHHHHHh-------Ccchhh---HHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCH
Confidence            9988764       222221   235677888889999999998887654        4688889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q 008016          432 VEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH  469 (581)
Q Consensus       432 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  469 (581)
                      ++|+.+|++++++        +|.....+..|+..+..
T Consensus       293 ~eA~~~~~~ai~l--------dP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         293 KETLQYFSTLKAV--------DPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------CcccHHHHHHHHHHHhH
Confidence            9999999999996        67777788888877664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=7.8e-16  Score=136.89  Aligned_cols=223  Identities=10%  Similarity=0.055  Sum_probs=153.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Q 008016          178 LKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGS  257 (581)
Q Consensus       178 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  257 (581)
                      .+.++..+++++.   .....++..+.+++.+|.+|...|++++|+..|++++.+.     ++   .+.++..+|.+|..
T Consensus        15 ~e~al~~~~e~l~---~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-----p~---~~~a~~~lg~~~~~   83 (259)
T d1xnfa_          15 QEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PD---MPEVFNYLGIYLTQ   83 (259)
T ss_dssp             HHHHHHHHHHHHT---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH---hhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-----CC---CHHHHhhhchHHHH
Confidence            3444444554433   2233456778899999999999999999999999999872     33   36789999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 008016          258 IGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAH  337 (581)
Q Consensus       258 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  337 (581)
                      .|++++|+..|++++++        +|....++.++|.++...|++++|+..++++++.        .|........++.
T Consensus        84 ~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~  147 (259)
T d1xnfa_          84 AGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLYL  147 (259)
T ss_dssp             TTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred             HHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--------ccccHHHHHHHHH
Confidence            99999999999999998        5566778999999999999999999999999986        2233344455666


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHH
Q 008016          338 AKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTH  417 (581)
Q Consensus       338 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  417 (581)
                      .+...+..+.+.........       ..+...........++. ....+..+.+...+......        .+....+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  211 (259)
T d1xnfa_         148 AEQKLDEKQAKEVLKQHFEK-------SDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSL--------AEHLSET  211 (259)
T ss_dssp             HHHHHCHHHHHHHHHHHHHH-------SCCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHH--------HHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhc-------cchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhc--------CcccHHH
Confidence            66666655554444333322       12222221111111110 01112233333333333322        2455678


Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Q 008016          418 LLNLAASYSRSKNFVEAERLLRICLD  443 (581)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~  443 (581)
                      +..+|.+|...|++++|+.+|++++.
T Consensus       212 ~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         212 NFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999987

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=6.5e-17  Score=149.76  Aligned_cols=269  Identities=9%  Similarity=-0.071  Sum_probs=205.6

Q ss_pred             HcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH----------HHhccCHHHHHHHHHHHHHHHHHHcCCCCHH
Q 008016          174 YIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSM----------YSTLENYEKSMLVYQRVINVLESRYGKTSIL  243 (581)
Q Consensus       174 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  243 (581)
                      ..+..++|+.++++++...       |....+|+..+.+          +...|++++|+.++++++..        +|.
T Consensus        41 ~~~~~~~al~~~~~~l~~~-------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--------~pk  105 (334)
T d1dcea1          41 AGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPK  105 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTT
T ss_pred             cccccHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--------CCC
Confidence            3344589999999988764       3333444444433          44556678888888888875        233


Q ss_pred             HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          244 LVTSLLGMAKVLGSIG--RAKKAVEIYHRVITILELNRGTESADLVLP-LFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       244 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      ...++..+|.++...+  ++++|+..+.+++..        +|....+ ...+|.++...|++++|+..+++++..    
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~----  173 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----  173 (334)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----
T ss_pred             cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--------CchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc----
Confidence            4667788888877765  589999999999998        3333444 567789999999999999999998864    


Q ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECL  400 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  400 (581)
                          +|....++.++|.++...|++++|...+.+++.+....              ......+...+..+++...+.+++
T Consensus       174 ----~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         174 ----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE--------------LELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             ----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH--------------HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             ----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH--------------HHHHHHHHHhcchhHHHHHHHHHH
Confidence                66778899999999999999999999888888875431              233445667788899999988887


Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHH
Q 008016          401 LITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLV  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  480 (581)
                      ...        |.....+..++.++...|++.+|+..+.+++.        .+|....++..+|.++...|++++|+++|
T Consensus       236 ~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         236 LGR--------AEPLFRCELSVEKSTVLQSELESCKELQELEP--------ENKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HSC--------CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HhC--------cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh--------hCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            642        22223456678888889999999999998876        57888899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Q 008016          481 LEALYIREIAFGKDSLPVGEALDCLVSIQTR  511 (581)
Q Consensus       481 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~  511 (581)
                      ++++++.        |.....+..|+..+..
T Consensus       300 ~~ai~ld--------P~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         300 STLKAVD--------PMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHC--------GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHC--------cccHHHHHHHHHHHhH
Confidence            9998863        5555677777776643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=9.5e-14  Score=134.69  Aligned_cols=280  Identities=9%  Similarity=-0.060  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHh
Q 008016          136 DAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYST  215 (581)
Q Consensus       136 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  215 (581)
                      +|+++|++|+++          .|+.+.++..+|.++...|++++|   |++++...       |..+......+.++  
T Consensus         4 eA~q~~~qA~~l----------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d-------p~~a~~~~~e~~Lw--   61 (497)
T d1ya0a1           4 QSAQYLRQAEVL----------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD-------LEYALDKKVEQDLW--   61 (497)
T ss_dssp             HHHHHHHHHHHH----------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC-------HHHHHHHTHHHHHH--
T ss_pred             HHHHHHHHHHHc----------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC-------hhhHHHHhHHHHHH--
Confidence            788999999987          777788889999999999999876   66665442       44443333222222  


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 008016          216 LENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGS  295 (581)
Q Consensus       216 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  295 (581)
                      ...|..++..+++..+..   ...+....  ....++.++...+.|+.|+..+.++..+        .+.....+.++|.
T Consensus        62 ~~~y~~~ie~~r~~~k~~---~~~~~~~~--~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--------~~~~~~~~~~lg~  128 (497)
T d1ya0a1          62 NHAFKNQITTLQGQAKNR---ANPNRSEV--QANLSLFLEAASGFYTQLLQELCTVFNV--------DLPCRVKSSQLGI  128 (497)
T ss_dssp             HHHTHHHHHHHHHHHSCS---SCTTTTHH--HHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             HHHHHHHHHHHHHhcccc---cCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------ChhhHHHHHHhHH
Confidence            122445555555544311   01111111  1122344444455555555555555443        4556778899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHH
Q 008016          296 LFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENM  375 (581)
Q Consensus       296 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  375 (581)
                      .+...|++++|...+.+++..          ....++.++|.++...|++++|+.+|++++++       .|+.   ...
T Consensus       129 ~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-------~P~~---~~~  188 (497)
T d1ya0a1         129 ISNKQTHTSAIVKPQSSSCSY----------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL-------VPSN---GQP  188 (497)
T ss_dssp             --------------CCHHHHH----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTB---SHH
T ss_pred             HHHhCCCHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-------CCCc---hHH
Confidence            999999999999999998865          23467889999999999999999999999998       2333   556


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (581)
                      +++||.++...|+..+|+.+|.+++.+        .+....++.+|+.++.+..+..++..            .....+.
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~--------~~~~~~a~~nL~~~~~~~~~~~~~~~------------~~~~~~~  248 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAV--------KFPFPAASTNLQKALSKALESRDEVK------------TKWGVSD  248 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSS--------SBCCHHHHHHHHHHHHHHTTSCCCCC------------SSCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC--------CCCCHHHHHHHHHHHHHhhhhhhhhc------------cccccch
Confidence            799999999999999999999999865        23345678888887765432211100            0011122


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHH
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIA  490 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  490 (581)
                      .......+..++...+.+++..+..++.+......
T Consensus       249 ~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  283 (497)
T d1ya0a1         249 FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKEL  283 (497)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            33344455555666677776666666665554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-13  Score=132.13  Aligned_cols=232  Identities=12%  Similarity=0.032  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 008016          221 KSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE  300 (581)
Q Consensus       221 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  300 (581)
                      +|+++|++|+.+..        +.+.++.++|.++..+|++.+|   |++++..        +|.....+...+.+.  .
T Consensus         4 eA~q~~~qA~~l~p--------~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--------dp~~a~~~~~e~~Lw--~   62 (497)
T d1ya0a1           4 QSAQYLRQAEVLKA--------DMTDSKLGPAEVWTSRQALQDL---YQKMLVT--------DLEYALDKKVEQDLW--N   62 (497)
T ss_dssp             HHHHHHHHHHHHHG--------GGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--------CHHHHHHHTHHHHHH--H
T ss_pred             HHHHHHHHHHHcCC--------CCHHHHhhHHHHHHHHchHHHH---HHHHHHc--------ChhhHHHHhHHHHHH--H
Confidence            78999999998753        3356778899999999999876   7888766        555555543333222  1


Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHH
Q 008016          301 GKAVDAESVFSRILKIYTKVYGENDGR-VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDL  379 (581)
Q Consensus       301 g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l  379 (581)
                      ..+..+++.+++..+.      ...+. .......++.++...+.|+.|+..+.+++.+       .   +.....+.++
T Consensus        63 ~~y~~~ie~~r~~~k~------~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-------~---~~~~~~~~~l  126 (497)
T d1ya0a1          63 HAFKNQITTLQGQAKN------RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-------D---LPCRVKSSQL  126 (497)
T ss_dssp             HHTHHHHHHHHHHHSC------SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred             HHHHHHHHHHHHhccc------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C---hhhHHHHHHh
Confidence            1234445555444321      11111 1111122344444445555555555554443       1   2224456889


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q 008016          380 AELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFP  459 (581)
Q Consensus       380 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  459 (581)
                      |..+...|+.++|...+++++...          ...++.++|.++..+|++++|+.+|++|+++        .|+...+
T Consensus       127 g~~~~~~~~~~~A~~~~~~al~~~----------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--------~P~~~~~  188 (497)
T d1ya0a1         127 GIISNKQTHTSAIVKPQSSSCSYI----------CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQP  188 (497)
T ss_dssp             ----------------CCHHHHHH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCchHH
Confidence            999999999999999999988653          2357889999999999999999999999996        6788889


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCC
Q 008016          460 MLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGED  515 (581)
Q Consensus       460 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  515 (581)
                      +++||.++...|++.+|+.+|.+++...        +....++.+|+.++.+..+.
T Consensus       189 ~~~Lg~~~~~~~~~~~A~~~y~ral~~~--------~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         189 YNQLAILASSKGDHLTTIFYYCRSIAVK--------FPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHSSS--------BCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999998643        33457888898888766543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.1e-12  Score=103.71  Aligned_cols=135  Identities=16%  Similarity=0.126  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC
Q 008016          289 PLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD  368 (581)
Q Consensus       289 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  368 (581)
                      .+.+.|..+...|++++|++.|.++.        +   ....+++++|.+|..+|++++|+..|++++++       .| 
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i~--------~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-------dp-   67 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAVQ--------D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-------DK-   67 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS--------S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CT-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcC--------C---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-------hh-
Confidence            34467999999999999999887531        1   22467899999999999999999999999997       23 


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-------cCC-CChHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKY-------KGK-EHPSFVTHLLNLAASYSRSKNFVEAERLLRI  440 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (581)
                        ....++.++|.++..+|++++|+..|++++...+..       .+. .......+++++|.++...|++++|++.+++
T Consensus        68 --~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~  145 (192)
T d1hh8a_          68 --HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  145 (192)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              335678999999999999999999999998753211       010 1223457889999999999999999999999


Q ss_pred             HHHH
Q 008016          441 CLDI  444 (581)
Q Consensus       441 al~~  444 (581)
                      ++.+
T Consensus       146 A~~~  149 (192)
T d1hh8a_         146 ATSM  149 (192)
T ss_dssp             HHTT
T ss_pred             HHhc
Confidence            8874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.3e-12  Score=105.44  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          206 LLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESAD  285 (581)
Q Consensus       206 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  285 (581)
                      ++..|..+...|++++|+..|.++.        +.+   ..+++++|.+|...|++++|+..|++++++        +|.
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~i~--------~~~---~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~   68 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSAVQ--------DPH---SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKH   68 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--------SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhcC--------CCC---HHHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhh
Confidence            4567999999999999999987531        222   457899999999999999999999999998        677


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-------cC-CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 008016          286 LVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV-------YG-ENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALR  357 (581)
Q Consensus       286 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  357 (581)
                      .+.++.++|.++..+|++++|+..|++++...+..       .+ ........++.++|.++...|++++|.+.+.+++.
T Consensus        69 ~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_          69 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            78999999999999999999999999998753211       00 01123467889999999999999999999999887


Q ss_pred             H
Q 008016          358 V  358 (581)
Q Consensus       358 ~  358 (581)
                      +
T Consensus       149 ~  149 (192)
T d1hh8a_         149 M  149 (192)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.3e-11  Score=96.22  Aligned_cols=98  Identities=14%  Similarity=0.114  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      +..+...|..|+..|+|++|+..|++++++        +|....++.++|.++...|++++|+..|++++++        
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--------   73 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------   73 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--------
Confidence            455677899999999999999999999998        6778899999999999999999999999999987        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +|....++..+|.++...|++++|+..+++++.+
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~  107 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  107 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            4667788999999999999999999999999987

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.9e-11  Score=92.13  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCc
Q 008016          247 SLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDG  326 (581)
Q Consensus       247 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  326 (581)
                      -+...|..+...|++++|+..|.++++.        .|....++..+|.+|...|++++|+..+.+++++        .|
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p   68 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KP   68 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhcccccccccccccccchhhhhHHHh--------cc
Confidence            3566799999999999999999999998        6777889999999999999999999999999987        45


Q ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          327 RVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       327 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      ....++.++|.++...|++++|+..|+++++.
T Consensus        69 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          69 DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            66788999999999999999999999999975

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-11  Score=92.67  Aligned_cols=98  Identities=13%  Similarity=0.114  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      +..+...|..++..|++++|+..|+++++.          .|..+.++..+|.+|...|++++|+..+.+++.+.     
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----   67 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKL----------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----   67 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCcchhhhhcccccccccccccccchhhhhHHHhc-----
Confidence            456888999999999999999999999987          88889999999999999999999999999998875     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                        |....+++.+|.++...|++++|+..|++++++
T Consensus        68 --p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~  100 (117)
T d1elwa_          68 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH  100 (117)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence              445567899999999999999999999999975

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.32  E-value=1.2e-10  Score=92.95  Aligned_cols=118  Identities=19%  Similarity=0.088  Sum_probs=96.5

Q ss_pred             HHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 008016          245 VTSLLGM--AKVLGSIGRAKKAVEIYHRVITILELNRGTE----SADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       245 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  318 (581)
                      +.++..+  |..+...|+|++|+..|++++++.+......    .+..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4445444  7788899999999999999999976643211    233567899999999999999999999999999988


Q ss_pred             HHcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 008016          319 KVYGEN---DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       319 ~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +.....   .+....+++++|.+|...|++++|+..|++++++.++.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            764322   23456678999999999999999999999999998874

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.31  E-value=7.5e-11  Score=94.26  Aligned_cols=139  Identities=20%  Similarity=0.188  Sum_probs=104.8

Q ss_pred             HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 008016          287 VLPLFSL--GSLFIKEGKAVDAESVFSRILKIYTKVYGEN----DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIK  360 (581)
Q Consensus       287 ~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  360 (581)
                      ..++..+  |..+...|+|++|+..|++++++.+......    .+..+.++.++|.+|..+|++++|+..+++++.+..
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4445544  8888999999999999999999876542211    123567899999999999999999999999999987


Q ss_pred             hhccCCCC-ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 008016          361 DSNYMSLD-DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYS  426 (581)
Q Consensus       361 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  426 (581)
                      +.....++ .+....+++++|.+|..+|++++|+..|++++++..+..+ ..+........++..+.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~-~~~~~~~~~~~~~~~l~  152 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG-ETPGKERMMEVAIDRIA  152 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS-CCTTHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc-hHHHHHHHHHHHHHHHH
Confidence            65222222 3455667899999999999999999999999999877643 33444444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.1e-11  Score=95.41  Aligned_cols=130  Identities=17%  Similarity=0.200  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTS-------ILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      +..+...|..++..|+|++|+..|++++...........       +....++.++|.+|...|++++|+.++++++.+ 
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence            455678999999999999999999999988544322222       234567888999999999999999999999998 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEA  348 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  348 (581)
                             +|..+.++..+|.+|..+|++++|+..|++++++        +|....+...++.+....+...+.
T Consensus        92 -------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          92 -------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHH
Confidence                   6777889999999999999999999999999987        333445566677766655554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.4e-11  Score=94.78  Aligned_cols=131  Identities=9%  Similarity=0.052  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhc
Q 008016          116 RQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSL  195 (581)
Q Consensus       116 ~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  195 (581)
                      .....+...|..+++.|+|++|+..|+++++.          .|..+.++..+|.++...|++++|+..+++++++.   
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---   74 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---   74 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc---
Confidence            45566889999999999999999999999998          88899999999999999999999999999998875   


Q ss_pred             CCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 008016          196 KDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKV--LGSIGRAKKAVEIYHRV  271 (581)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~a  271 (581)
                          |....++..+|.++...|++++|+..+++++.+     .++++   .++..++.+  ....+.+++|+......
T Consensus        75 ----p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~a~~~~~~~  140 (159)
T d1a17a_          75 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDK---DAKMKYQECNKIVKQKAFERAIAGDEHK  140 (159)
T ss_dssp             ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence                556677899999999999999999999999986     23333   333334433  33445566665544433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.4e-10  Score=88.82  Aligned_cols=105  Identities=13%  Similarity=0.141  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      .......|..++..|+|++|+..|+++++.          .|..+.++.++|.+|..+|++++|+..+++++.+......
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL----------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            345678899999999999999999999988          7888899999999999999999999999999999877777


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINV  232 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  232 (581)
                      .....+.++..+|.++...+++++|+.+|++++..
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            77778889999999999999999999999999874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-10  Score=88.77  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS  366 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  366 (581)
                      +..+..+|..++..|+|++|+.+|.+++++        +|....++.++|.+|..+|++++|+..+++++++....   .
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~---~   72 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN---R   72 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS---T
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc---H
Confidence            345678999999999999999999999987        45567889999999999999999999999999987763   3


Q ss_pred             CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          367 LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       367 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      ........++..+|.++...+++++|+.+|++++..
T Consensus        73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            344566778899999999999999999999999875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.28  E-value=1.8e-09  Score=95.16  Aligned_cols=226  Identities=14%  Similarity=0.035  Sum_probs=165.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhh
Q 008016          287 VLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDS  362 (581)
Q Consensus       287 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  362 (581)
                      +.+++.||..+...+++.+|+++|+++.+.          ....++..||.+|..    ..++..|..+++.+...    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            457889999999999999999999999763          234678899999987    67899999999987763    


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHH
Q 008016          363 NYMSLDDSIMENMRIDLAELLHI----VGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEA  434 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  434 (581)
                           ..+   .....+|.++..    .++.+.|...++++...       ..   ..+...++..+..    ......|
T Consensus        68 -----~~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~---~~a~~~l~~~~~~~~~~~~~~~~a  129 (265)
T d1ouva_          68 -----NYS---NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY---AEGCASLGGIYHDGKVVTRDFKKA  129 (265)
T ss_dssp             -----TCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             -----ccc---chhhccccccccccccchhhHHHHHHHhhhhhh-------hh---hhHHHhhcccccCCCcccchhHHH
Confidence                 122   234667777765    45778899888887653       11   2344556666654    4567777


Q ss_pred             HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHH
Q 008016          435 ERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYH----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQT  510 (581)
Q Consensus       435 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  510 (581)
                      ...+.+...          +.....+..||..+..    ..+...+..+++.+.+       ..+   ..+...+|.++.
T Consensus       130 ~~~~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-------~g~---~~A~~~lg~~y~  189 (265)
T d1ouva_         130 VEYFTKACD----------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-------LKD---SPGCFNAGNMYH  189 (265)
T ss_dssp             HHHHHHHHH----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHH
T ss_pred             HHHhhhhhc----------ccccchhhhhhhhhccCCCcccccccchhhhhcccc-------ccc---cccccchhhhcc
Confidence            777776655          2234567889999986    4566677777777654       233   367889999888


Q ss_pred             H----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHHHH
Q 008016          511 R----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       511 ~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      .    ..+.+ +|+.+|+++.+.       ++   ..+.+.||.+|..    ..++++|.++|+++...+.+.
T Consensus       190 ~g~~~~~d~~-~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         190 HGEGATKNFK-EALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HTCSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             cCcccccchh-hhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            7    45566 899999998762       33   4578899999986    348999999999998886543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-10  Score=93.64  Aligned_cols=132  Identities=12%  Similarity=0.063  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCC-----ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLD-----DSIMENMRIDLAELLHIVGRGQEGRELLEECLLI  402 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  402 (581)
                      .+..+...|..++..|++++|+..|++++............     ......++.++|.+|...|++++|+.++++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            35667789999999999999999999999986542111110     1233456677888888888888888888888877


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016          403 TEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (581)
                              +|....++..+|.+|..+|++++|+..|++++++        +|....+...++.+....+...+
T Consensus        92 --------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          92 --------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                    3555667888888888888888888888888885        34445556666666665554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.23  E-value=6.5e-09  Score=91.46  Aligned_cols=222  Identities=16%  Similarity=0.132  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHH
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK----EGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~  320 (581)
                      +.+++.+|..+...+++.+|+++|+++.+.          ....+...||.+|..    ..++..|..+++.+...    
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~----------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~----   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc----
Confidence            357889999999999999999999999764          125678899999987    67899999999887753    


Q ss_pred             cCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHH----cCChHHH
Q 008016          321 YGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHI----VGRGQEG  392 (581)
Q Consensus       321 ~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A  392 (581)
                            ....+...+|.++..    .++.+.|...++++...       +.     ......++..+..    ......|
T Consensus        68 ------~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-------g~-----~~a~~~l~~~~~~~~~~~~~~~~a  129 (265)
T d1ouva_          68 ------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY-----AEGCASLGGIYHDGKVVTRDFKKA  129 (265)
T ss_dssp             ------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC-----HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             ------cccchhhccccccccccccchhhHHHHHHHhhhhhh-------hh-----hhHHHhhcccccCCCcccchhHHH
Confidence                  223455677777765    46789999999988763       11     1233556666665    3345566


Q ss_pred             HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 008016          393 RELLEECLLITEKYKGKEHPSFVTHLLNLAASYSR----SKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLY  468 (581)
Q Consensus       393 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  468 (581)
                      ...+.+....          .....+..||.++..    ..+...+..+++.+.+.          ....+..++|.+|.
T Consensus       130 ~~~~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----------g~~~A~~~lg~~y~  189 (265)
T d1ouva_         130 VEYFTKACDL----------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----------KDSPGCFNAGNMYH  189 (265)
T ss_dssp             HHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHH
T ss_pred             HHHhhhhhcc----------cccchhhhhhhhhccCCCcccccccchhhhhccccc----------cccccccchhhhcc
Confidence            6666554332          123467788888886    45677888888887652          23467889999998


Q ss_pred             H----cCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHH
Q 008016          469 H----LNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTR----LGEDDTKLLELLKRVLRI  529 (581)
Q Consensus       469 ~----~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~~A~~~~~~a~~~  529 (581)
                      .    ..++++|+.+|+++.+.       .++   .++..||.+|..    ..+.. +|+++|+++...
T Consensus       190 ~g~~~~~d~~~A~~~~~~aa~~-------g~~---~a~~~LG~~y~~G~g~~~n~~-~A~~~~~kAa~~  247 (265)
T d1ouva_         190 HGEGATKNFKEALARYSKACEL-------ENG---GGCFNLGAMQYNGEGVTRNEK-QAIENFKKGCKL  247 (265)
T ss_dssp             HTCSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHTTSSSSCCST-THHHHHHHHHHH
T ss_pred             cCcccccchhhhhhhHhhhhcc-------cCH---HHHHHHHHHHHcCCCCccCHH-HHHHHHHHHHHC
Confidence            7    67899999999999762       333   678999999985    33677 999999999874

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.7e-11  Score=88.59  Aligned_cols=93  Identities=15%  Similarity=0.042  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch
Q 008016          248 LLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR  327 (581)
Q Consensus       248 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  327 (581)
                      .+.+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            567899999999999999999999988        6677899999999999999999999999999987        566


Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 008016          328 VGMAMCSLAHAKCANGNAEEAVELYKKAL  356 (581)
Q Consensus       328 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  356 (581)
                      ...++..+|.+|...|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            77899999999999999999999999875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.22  E-value=3.1e-10  Score=91.80  Aligned_cols=139  Identities=18%  Similarity=0.296  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT-------SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      +..+...|..++..|+|.+|+..|.+++.+........       .+....++.++|.+|...|++++|+..+++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            45577899999999999999999999998764432221       1235567889999999999999999999999998 


Q ss_pred             HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHHH-HHHHHHH
Q 008016          276 ELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAEE-AVELYKK  354 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~  354 (581)
                             +|....+++.+|.++..+|++++|+..|.+++.+        +|....+...++.+....+.+.+ ....+.+
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQIFMCQKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   6777899999999999999999999999999975        34445566677777665554433 3444444


Q ss_pred             HHH
Q 008016          355 ALR  357 (581)
Q Consensus       355 al~  357 (581)
                      +.+
T Consensus       159 ~f~  161 (168)
T d1kt1a1         159 MFK  161 (168)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=6.2e-11  Score=99.92  Aligned_cols=101  Identities=19%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      +..+...|..++..|+|++|+..|++++++        .|..+.++.++|.+|...|++++|+..|++++++        
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--------   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--------
Confidence            345678899999999999999999999998        5677899999999999999999999999999875        


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKD  361 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  361 (581)
                      +|....++.++|.+|..+|++++|+..|++++.+...
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            5677889999999999999999999999999998654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.20  E-value=1.4e-10  Score=92.12  Aligned_cols=122  Identities=12%  Similarity=0.111  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSI--------LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       203 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      +..+...|..++..|+|.+|+..|++++.+..........        ....++.++|.+|..+|++++|+..+++++++
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            3456778999999999999999999999875443222222        23467889999999999999999999999998


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKC  340 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  340 (581)
                              +|....+++.+|.++..+|++++|+..|++++++        +|....+...++.+..
T Consensus        97 --------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          97 --------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVN  146 (153)
T ss_dssp             --------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHH
T ss_pred             --------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHH
Confidence                    6777899999999999999999999999999987        3343444555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.19  E-value=1.1e-10  Score=87.06  Aligned_cols=93  Identities=11%  Similarity=-0.063  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc
Q 008016          376 RIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS  455 (581)
Q Consensus       376 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  455 (581)
                      ...+|..+...|++++|+..+++++..        .|....++..+|.++...|++++|+..|++++++        +|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--------ccc
Confidence            367899999999999999999999987        3555689999999999999999999999999996        577


Q ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          456 ISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (581)
Q Consensus       456 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (581)
                      ...++..+|.+|..+|++++|++.+++.+
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            78899999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.18  E-value=2.8e-10  Score=92.33  Aligned_cols=126  Identities=13%  Similarity=0.133  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYG--------KTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILE  276 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  276 (581)
                      .+...|..++..|+|.+|+..|.+++........        ...|....++.++|.++...|++++|+..+.+++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            3466788899999999999999999987543211        123567788999999999999999999999999987  


Q ss_pred             HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHCCCHH
Q 008016          277 LNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCANGNAE  346 (581)
Q Consensus       277 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  346 (581)
                            +|..+.++..+|.+|..+|++++|+..|++++++        .|....+...++.+........
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHH
Confidence                  6777899999999999999999999999999997        2333445556666655444333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.18  E-value=3.6e-10  Score=91.39  Aligned_cols=128  Identities=14%  Similarity=0.102  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          373 ENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE-------HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       373 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      +..+...|..+...|++.+|+..|++++..........       .+....++.++|.+|..+|++++|+..+++++.+ 
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence            34457789999999999999999999998764432211       1234567889999999999999999999999986 


Q ss_pred             HHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCCh
Q 008016          446 TKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDD  516 (581)
Q Consensus       446 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  516 (581)
                             +|....+++.+|.++..+|++++|+..|++++.+.     |+++   .+...++.+....+...
T Consensus        94 -------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-----P~n~---~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          94 -------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-----PQNK---AARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH---HHHHHHHHHHHHHHHHH
T ss_pred             -------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHHhHH
Confidence                   57778899999999999999999999999998753     4444   55666676665555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=1.2e-09  Score=98.66  Aligned_cols=193  Identities=10%  Similarity=0.022  Sum_probs=142.0

Q ss_pred             ChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 008016          177 DLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG  256 (581)
Q Consensus       177 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  256 (581)
                      ..++|..++++++...      .|.....+...+.+....|++++|...|++++...     +.+  ...++...+....
T Consensus        79 ~~~~a~~i~~ral~~~------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~~--~~~~w~~~~~~~~  145 (308)
T d2onda1          79 FSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DID--PTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSC--THHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----cCC--hHHHHHHHHHHHH
Confidence            3456666666665432      13334467788899999999999999999988641     222  2345777888899


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 008016          257 SIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF-IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSL  335 (581)
Q Consensus       257 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  335 (581)
                      ..|+++.|...|+++++.        .|.....+...+... ...|+.+.|..+|++++...        |.....+...
T Consensus       146 ~~~~~~~ar~i~~~al~~--------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--------p~~~~~w~~y  209 (308)
T d2onda1         146 RAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAY  209 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--------hhhHHHHHHH
Confidence            999999999999998865        333345566666654 44689999999999999863        3345667778


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          336 AHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       336 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      +......|++++|..+|++++...      +.++.....++..........|+.+.+..+++++.+.+.
T Consensus       210 ~~~~~~~g~~~~aR~~fe~ai~~~------~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         210 IDYLSHLNEDNNTRVLFERVLTSG------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSS------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            888999999999999999998752      122222334556667777788999999999999887764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=6e-11  Score=100.00  Aligned_cols=101  Identities=11%  Similarity=0.035  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCC
Q 008016          118 LLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKD  197 (581)
Q Consensus       118 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  197 (581)
                      +..+...|..+++.|+|++|+..|+++++.          .|..+.++.++|.+|...|++++|+..+++++.+.     
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-----   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-----   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-----
Confidence            456889999999999999999999999998          78889999999999999999999999999987653     


Q ss_pred             CcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Q 008016          198 DEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLES  235 (581)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  235 (581)
                        |....++..+|.+|...|++++|+..|++++.+...
T Consensus        69 --p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          69 --GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence              666778999999999999999999999999998654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=4.8e-09  Score=94.49  Aligned_cols=191  Identities=13%  Similarity=0.101  Sum_probs=140.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 008016          218 NYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLF  297 (581)
Q Consensus       218 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  297 (581)
                      ..++|...|++++..       ..|.....+...+..+...|++++|...|++++...       ......++...+...
T Consensus        79 ~~~~a~~i~~ral~~-------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-------~~~~~~~w~~~~~~~  144 (308)
T d2onda1          79 FSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFA  144 (308)
T ss_dssp             HHHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHH
Confidence            345566666666542       122334567888999999999999999999988641       222345677888999


Q ss_pred             HHcCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHH
Q 008016          298 IKEGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAK-CANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMR  376 (581)
Q Consensus       298 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  376 (581)
                      ...|+++.|...|+++++.        .|.....+...+... ...|+.+.|..+|++++...       |+.   ...+
T Consensus       145 ~~~~~~~~ar~i~~~al~~--------~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------p~~---~~~w  206 (308)
T d2onda1         145 RRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDI---PEYV  206 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTS--------TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTC---HHHH
T ss_pred             HHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------hhh---HHHH
Confidence            9999999999999998864        233334555666654 44689999999999999873       233   3455


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 008016          377 IDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHP-SFVTHLLNLAASYSRSKNFVEAERLLRICLDIM  445 (581)
Q Consensus       377 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (581)
                      ...+..+...|+++.|..+|++++...     +.+| .....+..........|+.+.+..+++++.+.+
T Consensus       207 ~~y~~~~~~~g~~~~aR~~fe~ai~~~-----~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         207 LAYIDYLSHLNEDNNTRVLFERVLTSG-----SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSS-----SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            778889999999999999999998753     2233 234466667777788899999999999988864

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.13  E-value=6.4e-10  Score=88.20  Aligned_cols=123  Identities=10%  Similarity=-0.000  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcch---------HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPL---------LDAILLHMGSMYSTLENYEKSMLVYQRVIN  231 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  231 (581)
                      .+..+...|..++..|+|.+|+..|++++............         ...++.++|.+|..+|++++|+..+++++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            34556778999999999999999999999876543322221         235678899999999999999999999998


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 008016          232 VLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIK  299 (581)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  299 (581)
                      +        +|....+++.+|.++...|++++|+..|++++++        .|....+...++.+...
T Consensus        96 ~--------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          96 I--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             H--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHH
T ss_pred             c--------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            6        2344789999999999999999999999999998        45555666666665443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.12  E-value=7e-10  Score=89.92  Aligned_cols=129  Identities=17%  Similarity=0.125  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCC------CCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          331 AMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMS------LDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+...|..+...|++++|+..|.+++..........      ...+....++.++|.++..+|++++|+..+++++++  
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--  106 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--  106 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--
Confidence            355678889999999999999999998754321111      113455667899999999999999999999999876  


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKE  475 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  475 (581)
                            .|....++..+|.+|...|++++|+..|++++++        .|....+...++.+........+
T Consensus       107 ------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         107 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------APEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  4566788999999999999999999999999996        34444566666766655444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.4e-10  Score=83.24  Aligned_cols=96  Identities=10%  Similarity=0.025  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHcCCCC
Q 008016          249 LGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKA---VDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       249 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      ..++..+...+++++|++.|++++.+        .|....+++++|.++...++.   ++|+..+++++..      ...
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~   68 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCC
Confidence            35677888899999999999999998        677788999999999875554   5688888877653      122


Q ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 008016          326 GRVGMAMCSLAHAKCANGNAEEAVELYKKALRV  358 (581)
Q Consensus       326 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  358 (581)
                      +....+++++|.+|...|++++|+.+|++++++
T Consensus        69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344678999999999999999999999999997

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.3e-10  Score=83.65  Aligned_cols=112  Identities=6%  Similarity=-0.034  Sum_probs=87.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHcCCCCH
Q 008016          166 DIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSI  242 (581)
Q Consensus       166 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~  242 (581)
                      ..++..+...+++++|++.|++++.+.       |....+++++|.++...   +++++|+..+++++..      ...+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-------p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~------~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc------cCCc
Confidence            356677888999999999999998875       45556789999999864   5556788888887753      1234


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 008016          243 LLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFI  298 (581)
Q Consensus       243 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  298 (581)
                      ....+++++|.+|...|++++|+.+|++++++        .|....+...++.+..
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--------~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------EPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHH
Confidence            55678999999999999999999999999998        5655666666655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.8e-09  Score=75.52  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESA  284 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  284 (581)
                      -++.+|.+++..|+|++|+.+|++|+++..... ...+..+.++.++|.++...|++++|+.++++++++        +|
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~P   77 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------Cc
Confidence            468899999999999999999999999876542 223456789999999999999999999999999998        56


Q ss_pred             hhHHHHHHHHHHHH
Q 008016          285 DLVLPLFSLGSLFI  298 (581)
Q Consensus       285 ~~~~~~~~la~~~~  298 (581)
                      ....++.+++.+..
T Consensus        78 ~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          78 EHQRANGNLKYFEY   91 (95)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            66778888876544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=9.5e-09  Score=73.38  Aligned_cols=85  Identities=14%  Similarity=0.023  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCc
Q 008016          375 MRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQ  454 (581)
Q Consensus       375 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  454 (581)
                      -.+.+|.++...|++++|+.+|++|+++.... ....+....++.++|.++.+.|++++|+.++++++++        +|
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------~P   77 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEG-EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP   77 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-hccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------Cc
Confidence            34789999999999999999999999987654 2334567789999999999999999999999999996        46


Q ss_pred             chHHHHHHHHHHHH
Q 008016          455 SISFPMLHLGITLY  468 (581)
Q Consensus       455 ~~~~~~~~la~~~~  468 (581)
                      ....++.+++.+..
T Consensus        78 ~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          78 EHQRANGNLKYFEY   91 (95)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            66678888776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=1.5e-08  Score=78.94  Aligned_cols=104  Identities=14%  Similarity=0.013  Sum_probs=78.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHHHHHhcCC
Q 008016          382 LLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRS----------KNFVEAERLLRICLDIMTKTVGP  451 (581)
Q Consensus       382 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  451 (581)
                      .+.+.+.+++|+..|++++++        .|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            355677899999999999987        466678899999998754          4567899999999886       


Q ss_pred             CCcchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHH
Q 008016          452 DDQSISFPMLHLGITLYHLNR-----------DKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQ  509 (581)
Q Consensus       452 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  509 (581)
                       +|....+++++|.+|..+|+           +++|.++|++++++.     |++   ...+..|+...
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~-----P~~---~~~~~~L~~~~  130 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ-----PDN---THYLKSLEMTA  130 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC-----CCH---HHHHHHHHHHH
Confidence             57778899999999988754           566777777777653     343   35556666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=8.3e-09  Score=80.48  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=71.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHHcCC
Q 008016          254 VLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKE----------GKAVDAESVFSRILKIYTKVYGE  323 (581)
Q Consensus       254 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~  323 (581)
                      .+.+.+.|++|+..|++++++        +|..+.++.++|.++...          +.+++|+..|++++++       
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-------   70 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-------   70 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-------
Confidence            355677899999999999998        788889999999999865          4457788888888876       


Q ss_pred             CCchHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHH
Q 008016          324 NDGRVGMAMCSLAHAKCANGN-----------AEEAVELYKKALRV  358 (581)
Q Consensus       324 ~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~  358 (581)
                       +|....++.++|.+|..+|+           +++|.++|++++++
T Consensus        71 -~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          71 -DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence             56777889999999987653           56777777777765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=5.5e-07  Score=72.48  Aligned_cols=116  Identities=10%  Similarity=-0.016  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC--------------CHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 008016          202 LDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT--------------SILLVTSLLGMAKVLGSIGRAKKAVEI  267 (581)
Q Consensus       202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~  267 (581)
                      ....+...|......|++++|...|.+++.+++...-.+              .+....++..++.++...|++++|+..
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            345678889999999999999999999998753211100              123557789999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC
Q 008016          268 YHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEND  325 (581)
Q Consensus       268 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  325 (581)
                      +++++..        +|....++..++.++...|++.+|+..|+++.....+.+|.+.
T Consensus        90 ~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          90 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999998        7778899999999999999999999999999998877666543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=6.2e-07  Score=72.18  Aligned_cols=115  Identities=11%  Similarity=-0.129  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC--------------ChHHHHHHHHHHHHHHHccCHHHHHHH
Q 008016          372 MENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKE--------------HPSFVTHLLNLAASYSRSKNFVEAERL  437 (581)
Q Consensus       372 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (581)
                      ....+...|......|++++|...|.+++.+....+..+              .+....++..++.++...|++++|+..
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            345667889999999999999999999998753211000              123446788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCC
Q 008016          438 LRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKD  494 (581)
Q Consensus       438 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  494 (581)
                      +++++.+        +|....++..++.++...|++.+|+..|+++.....+.+|.+
T Consensus        90 ~~~al~~--------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~  138 (179)
T d2ff4a2          90 LEALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID  138 (179)
T ss_dssp             HHHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999996        677888999999999999999999999999998887776655

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.43  E-value=1e-06  Score=75.79  Aligned_cols=128  Identities=9%  Similarity=-0.078  Sum_probs=97.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHH
Q 008016          424 SYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALD  503 (581)
Q Consensus       424 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  503 (581)
                      -....|++++|+..++++++        .+|.....+..++.++...|++++|...+++++++.        |.......
T Consensus         5 ~aL~~G~l~eAl~~l~~al~--------~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--------P~~~~~~~   68 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIK--------ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--------PEYLPGAS   68 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------GGGHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCcHHHHH
Confidence            35678999999999999998        378888899999999999999999999999998864        55556667


Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH
Q 008016          504 CLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKY  575 (581)
Q Consensus       504 ~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~  575 (581)
                      .++.++...+...        .+............|+....+...+.++...|++++|.+.++++.++.+..
T Consensus        69 ~l~~ll~a~~~~~--------~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          69 QLRHLVKAAQARK--------DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             HHHHHHHHHHHHH--------HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHhccccH--------HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            7777764443332        222211111122345666777788999999999999999999998876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.36  E-value=2.8e-07  Score=79.36  Aligned_cols=127  Identities=10%  Similarity=-0.020  Sum_probs=98.5

Q ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHH
Q 008016          125 VKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDA  204 (581)
Q Consensus       125 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  204 (581)
                      ++..++.|++++|+..++++++.          .|.++..+..++.++...|++++|+..++++.+..       |....
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~----------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-------P~~~~   65 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-------PEYLP   65 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------GGGHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHH
Confidence            45677899999999999999987          89999999999999999999999999999998875       55555


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008016          205 ILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITIL  275 (581)
Q Consensus       205 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  275 (581)
                      .+..++.++...+..+++...+.+..       ....+.....+...+..+...|++++|...++++.+..
T Consensus        66 ~~~~l~~ll~a~~~~~~a~~~~~~~~-------~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDFAQGAATAK-------VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCEE-------CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccHHHHHHhhhhh-------cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            66677777665555444333222111       11234455667778999999999999999999998874

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00011  Score=55.50  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=84.0

Q ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 008016          217 ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSL  296 (581)
Q Consensus       217 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  296 (581)
                      .++++|+.+|+++.+.       .+   ..++..++.  ....+.++|+.+++++.+.          ....+.+.||.+
T Consensus         7 kd~~~A~~~~~kaa~~-------g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~----------g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-------NE---MFGCLSLVS--NSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-------TC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-------CC---hhhhhhhcc--ccccCHHHHHHHHhhhhcc----------cchhhhhhHHHh
Confidence            4788999999998763       11   234455553  4567899999999988764          235678889999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 008016          297 FIK----EGKAVDAESVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA----NGNAEEAVELYKKALRV  358 (581)
Q Consensus       297 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  358 (581)
                      |..    ..++.+|..+|+++.+.          ....+...||.+|..    ..++++|..+|+++.+.
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~----------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhccccchhhHHHHHHHhhhhcc----------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            986    56789999999999763          234677889999987    56899999999999875

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=0.00012  Score=55.34  Aligned_cols=113  Identities=9%  Similarity=-0.010  Sum_probs=82.9

Q ss_pred             cCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 008016          429 KNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSI  508 (581)
Q Consensus       429 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~  508 (581)
                      .++++|+.+|+++.+.       .++   .+...|+.  ....+.++|+.+++++.+       .+++   .+...||.+
T Consensus         7 kd~~~A~~~~~kaa~~-------g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~-------~g~~---~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL-------NEM---FGCLSLVS--NSQINKQKLFQYLSKACE-------LNSG---NGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT-------TCT---THHHHHHT--CTTSCHHHHHHHHHHHHH-------TTCH---HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC-------CCh---hhhhhhcc--ccccCHHHHHHHHhhhhc-------ccch---hhhhhHHHh
Confidence            4788999999999763       222   24455553  345788999999998866       2344   678889999


Q ss_pred             HHH----cCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCChhhhHHHHHHHHHHHHH
Q 008016          509 QTR----LGEDDTKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDK----LGRKEEKFPLKKRLSNLRMK  574 (581)
Q Consensus       509 ~~~----~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~l~~~  574 (581)
                      |..    ..+.. +|+.+|+++.+.       .+   ..+...||.+|..    ..+.++|..+|+++.+.+..
T Consensus        65 y~~g~~~~~d~~-~A~~~~~~aa~~-------g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          65 YENGKYVKKDLR-KAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHCSSSCCCHH-HHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             hhhccccchhhH-HHHHHHhhhhcc-------Cc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            875    23345 899999988762       33   4567889999987    46899999999999877543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=7.9e-05  Score=53.74  Aligned_cols=74  Identities=11%  Similarity=-0.091  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHh
Q 008016          499 GEALDCLVSIQTRLGEDD--TKLLELLKRVLRIQEREFGSESEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLSNLRMKYK  576 (581)
Q Consensus       499 ~~~~~~la~~~~~~g~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~l~~~~~  576 (581)
                      ..+.++.|.++.+..+..  .+++.++++++.       .+.....++++.||..|.+.|++++|..++++++++.|.+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~-------~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-------EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-------HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-------cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            467888899988876554  255555555543       23234568999999999999999999999999999998877


Q ss_pred             hhh
Q 008016          577 QKV  579 (581)
Q Consensus       577 ~~~  579 (581)
                      ++.
T Consensus       108 qA~  110 (124)
T d2pqrb1         108 QVG  110 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=0.00095  Score=47.97  Aligned_cols=65  Identities=5%  Similarity=-0.104  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008016          203 DAILLHMGSMYSTL---ENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       203 ~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  274 (581)
                      ..+.+..|+++...   .+.++|+.++++++..       ++.....+++.+|..|.+.|+|++|..++++++++
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            45678888888755   5566888888877653       22234689999999999999999999999999998

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=1.2  Score=40.63  Aligned_cols=379  Identities=9%  Similarity=-0.001  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCC
Q 008016          119 LELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDD  198 (581)
Q Consensus       119 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  198 (581)
                      +..+..+...+..|++.++..+..+.           .+.|-.+.+.+.-...........+...++++        .++
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-----------~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~--------~p~   67 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-----------KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA--------NPT   67 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-----------TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH--------CTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-----------cCCCCHHHHHHHHHHhccccCCHHHHHHHHHH--------CCC
Confidence            45677888888999988877655442           12343333332222222233444444444433        245


Q ss_pred             cchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008016          199 EPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELN  278 (581)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  278 (581)
                      .|....+....-..+...+++...+.++.            ..|.........+.+....|+.++|......+...    
T Consensus        68 ~P~~~~lr~~~l~~L~~~~~w~~~~~~~~------------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~----  131 (450)
T d1qsaa1          68 LPPARTLQSRFVNELARREDWRGLLAFSP------------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT----  131 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHCC------------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC----
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHhcc------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            45544443333344455666554333221            22222344445666777788888777665443211    


Q ss_pred             cCCCChh---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHH--------cCCC
Q 008016          279 RGTESAD---------------LVLPLFSLGSLFIKEGKAVDAESVFSRI-----------LKIYTKV--------YGEN  324 (581)
Q Consensus       279 ~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~~~--------~~~~  324 (581)
                       +...|.               ....+..........|++..|.......           +.+....        ..+.
T Consensus       132 -~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~  210 (450)
T d1qsaa1         132 -GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGA  210 (450)
T ss_dssp             -SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCC
T ss_pred             -CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCC
Confidence             111111               1112223344455556666555443321           1111000        0111


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGRELLEECLLITE  404 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  404 (581)
                      .+ ........+..-....+.+.|...+......      ..............++..+...+..+.+..++......  
T Consensus       211 ~~-~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~--  281 (450)
T d1qsaa1         211 TD-FTRQMAAVAFASVARQDAENARLMIPSLAQA------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--  281 (450)
T ss_dssp             CH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--
T ss_pred             Ch-hhhHHHHHHHHHHhccChhHHHHHHHhhhhc------ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc--
Confidence            11 1111222333333445777777777665443      12223333333344444445566777777766654322  


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008016          405 KYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEAL  484 (581)
Q Consensus       405 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  484 (581)
                          ........  ..++ .....+++..+...+...        ...........+-+|..+...|+.++|..+|..+.
T Consensus       282 ----~~~~~~~~--w~~~-~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         282 ----SQSTSLIE--RRVR-MALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             ----CCCHHHHH--HHHH-HHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----ccchHHHH--HHHH-HHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence                22222222  2233 345568888888776643        22334456677899999999999999999999865


Q ss_pred             HH-------HHHHcCCCC----------hh---HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 008016          485 YI-------REIAFGKDS----------LP---VGEALDCLVSIQTRLGEDDTKLLELLKRVLRIQEREFGSESEEVMLT  544 (581)
Q Consensus       485 ~~-------~~~~~~~~~----------~~---~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  544 (581)
                      .-       ....+|...          +.   ....-...+..+...|+.. .|...+..++.       ..++.   -
T Consensus       347 ~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~-~A~~e~~~l~~-------~~~~~---~  415 (450)
T d1qsaa1         347 QQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDN-TARSEWANLVK-------SKSKT---E  415 (450)
T ss_dssp             TSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHH-HHHHHHHHHHT-------TCCHH---H
T ss_pred             cCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCch-HHHHHHHHHHh-------CCCHH---H
Confidence            41       111122110          00   1111223466677888888 77776665543       22333   3


Q ss_pred             HHHHHHHHHHcCChhhhHHHHHHH
Q 008016          545 LKKVVSYLDKLGRKEEKFPLKKRL  568 (581)
Q Consensus       545 ~~~la~~~~~~g~~~~A~~~~~~a  568 (581)
                      ...++.+..+.|.++.|+....++
T Consensus       416 ~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         416 QAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCChhHHHHHHHHH
Confidence            456788999999999999876654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.21  E-value=3.1  Score=35.65  Aligned_cols=173  Identities=12%  Similarity=0.011  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHH
Q 008016          165 LDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILL  244 (581)
Q Consensus       165 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  244 (581)
                      ...+|..+...|.|+.|..+|.....               +..+..++...+++..|.....++-          .   
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d---------------~~rl~~~~v~l~~~~~avd~~~k~~----------~---   68 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSN---------------FGRLASTLVHLGEYQAAVDGARKAN----------S---   68 (336)
T ss_dssp             ------------CTTTHHHHHHHTTC---------------HHHHHHHHHTTTCHHHHHHHHHHHT----------C---
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC---------------HHHHHHHHHhhccHHHHHHHHHHcC----------C---
Confidence            34567788888999999888876311               2334566778888888887766541          1   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          245 VTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGEN  324 (581)
Q Consensus       245 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  324 (581)
                      ..+|..+...+.......-|.-     ...    ....+++   -...+...|...|.+++...+++.++..       +
T Consensus        69 ~~~~k~~~~~l~~~~e~~la~i-----~~~----~~~~~~d---~l~~~v~~ye~~~~~e~Li~~Le~~~~~-------~  129 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLAQM-----CGL----HIVVHAD---ELEELINYYQDRGYFEELITMLEAALGL-------E  129 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-----TTT----TTTTCHH---HHHHHHHHHHHTTCHHHHHHHHHHHTTS-------T
T ss_pred             HHHHHHHHHHHHhCcHHHHHHH-----HHH----HhhcCHH---HHHHHHHHHHHcCChHHHHHHHHHHHcC-------C
Confidence            3355555666665555433211     000    0011222   2344667778888888888888876532       1


Q ss_pred             CchHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHhhccCCCCChHHHHHHHHHHHHHHHcCChHHHHHH
Q 008016          325 DGRVGMAMCSLAHAKCANGNAEEAVELYKK---------ALRVIKDSNYMSLDDSIMENMRIDLAELLHIVGRGQEGREL  395 (581)
Q Consensus       325 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  395 (581)
                      . .....+..++.+|.+.+ .++-.++++.         ++..+++.           ..+..+..+|.+.|++++|...
T Consensus       130 ~-~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~  196 (336)
T d1b89a_         130 R-AHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIIT  196 (336)
T ss_dssp             T-CCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHH
T ss_pred             c-cchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHc-----------CChHHHHHHHHhcCCHHHHHHH
Confidence            1 22234566777776643 3443443332         22222210           1123455677778888877765


Q ss_pred             HH
Q 008016          396 LE  397 (581)
Q Consensus       396 ~~  397 (581)
                      +-
T Consensus       197 ~i  198 (336)
T d1b89a_         197 MM  198 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.20  E-value=3.1  Score=35.64  Aligned_cols=175  Identities=7%  Similarity=-0.049  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEP  200 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  200 (581)
                      .-..|..+.+.|.|+.|..+|...-.                  +..+..++...+++..|.+.+.+..           
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d------------------~~rl~~~~v~l~~~~~avd~~~k~~-----------   67 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSN------------------FGRLASTLVHLGEYQAAVDGARKAN-----------   67 (336)
T ss_dssp             ------------CTTTHHHHHHHTTC------------------HHHHHHHHHTTTCHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCC------------------HHHHHHHHHhhccHHHHHHHHHHcC-----------
Confidence            44556677888999999988875311                  2334567778899999888876631           


Q ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 008016          201 LLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG  280 (581)
Q Consensus       201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  280 (581)
                       ...+|..+...+....+..-+...     ..    ....++..   ...+...|...|.+++.+.+++.++..      
T Consensus        68 -~~~~~k~~~~~l~~~~e~~la~i~-----~~----~~~~~~d~---l~~~v~~ye~~~~~e~Li~~Le~~~~~------  128 (336)
T d1b89a_          68 -STRTWKEVCFACVDGKEFRLAQMC-----GL----HIVVHADE---LEELINYYQDRGYFEELITMLEAALGL------  128 (336)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHT-----TT----TTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred             -CHHHHHHHHHHHHhCcHHHHHHHH-----HH----HhhcCHHH---HHHHHHHHHHcCChHHHHHHHHHHHcC------
Confidence             112455566666665555433111     00    01122222   234567778889999998888876543      


Q ss_pred             CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCch-HH------HHHHHHHHHHHHCCCHHHHHHHHH
Q 008016          281 TESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKVYGENDGR-VG------MAMCSLAHAKCANGNAEEAVELYK  353 (581)
Q Consensus       281 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~------~~~~~la~~~~~~g~~~~A~~~~~  353 (581)
                        .+.....++.++.+|.+.+ .++-.+++...       ....++. ..      ..+..+..+|.+.|++++|+...-
T Consensus       129 --~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~-------s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i  198 (336)
T d1b89a_         129 --ERAHMGMFTELAILYSKFK-PQKMREHLELF-------WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  198 (336)
T ss_dssp             --TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH-------STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             --CccchHHHHHHHHHHHHhC-hHHHHHHHHhc-------cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH
Confidence              1223446677888777654 33433333321       0111111 11      113456677788888888876553

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=1.6  Score=27.69  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChh
Q 008016          117 QLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIE  160 (581)
Q Consensus       117 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  160 (581)
                      ....+...|...-..|+|++|+.+|.++++.+...+...++++.
T Consensus        10 ~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~   53 (77)
T d1wr0a1          10 KAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDK   53 (77)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            44568888999999999999999999999988776544433443

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=87.22  E-value=5.6  Score=31.25  Aligned_cols=186  Identities=13%  Similarity=0.028  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccCCCCChHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcCCC
Q 008016          332 MCSLAHAKCANGNAEEAVELYKKALRVIKDSNYMSLDDSIMENMRIDLAELLH-IVGRGQEGRELLEECLLITEKYKGKE  410 (581)
Q Consensus       332 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  410 (581)
                      ...+|.+..+.|+|++..+..++++++....   +++-  ...=.+.+..+|- ..|....+...+....   .+.  ..
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~---n~eL--t~eERnLLsvayKn~i~~~R~s~R~i~~ie---~k~--~~   76 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFE---NSEF--DDEERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQ--LN   76 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHS--CS
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhccc---CccC--CHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---Hhh--cc
Confidence            3457889999999999999999999885421   1111  0111122333332 2233444444433211   111  11


Q ss_pred             ChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHHH-----HcCChHHHHHHHHHHH
Q 008016          411 HPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKTVGPDDQS-ISFPMLHLGITLY-----HLNRDKEAEKLVLEAL  484 (581)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~-----~~g~~~~A~~~~~~a~  484 (581)
                      ......    +..-|. ..--.+-...+...+.+....+.+. +. .+..+...|..|.     ..|.-++|...|++|.
T Consensus        77 ~~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~-~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~  150 (220)
T d2o8pa1          77 NDELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKS-FFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAF  150 (220)
T ss_dssp             CHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCS-HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             chhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            221111    111111 1122344555666666666655443 32 2222222343332     4688899999999999


Q ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHhc
Q 008016          485 YIREIAFGKDSLPVGEALDCLVSIQTR-LGEDDTKLLELLKRVLRIQEREF  534 (581)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~~A~~~~~~a~~~~~~~~  534 (581)
                      ++....+.|.||.......+.+..+.. .++.+ +|.++.++|.+.+...+
T Consensus       151 ~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~-~A~~lAk~A~~~fdeai  200 (220)
T d2o8pa1         151 TLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKK-QVFNMLNSLGKILELQI  200 (220)
T ss_dssp             HHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHH
Confidence            999888888888777666676666655 56666 99999888865544443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.11  E-value=2.5  Score=27.96  Aligned_cols=57  Identities=11%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 008016          115 ERQLLELFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGY  172 (581)
Q Consensus       115 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (581)
                      ......++..|..+-..|+|++|+.+|.++++.+...+.. ..++.....+.....-|
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~-e~~~~~k~~l~~k~~eY   68 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKG-TKESSKRCVLRTKISGY   68 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHH
Confidence            3445568999999999999999999999999988877643 33444444554444444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=87.07  E-value=10  Score=33.98  Aligned_cols=352  Identities=9%  Similarity=-0.060  Sum_probs=182.0

Q ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          161 EVAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       161 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      .....+..+.-....|++.++..+...+        .+.|....+.+.............+...++++         .++
T Consensus         5 ~~r~~y~~a~~a~~~~~~~~~~~~~~~L--------~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~---------~p~   67 (450)
T d1qsaa1           5 EQRSRYAQIKQAWDNRQMDVVEQMMPGL--------KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRA---------NPT   67 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHSGGG--------TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHH---------CTT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHhhh--------cCCCCHHHHHHHHHHhccccCCHHHHHHHHHH---------CCC
Confidence            3445556667777888888776655542        34454332211111111122333333333221         356


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRGTESADLVLPLFSLGSLFIKEGKAVDAESVFSRILKIYTKV  320 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  320 (581)
                      .|.........-..+...+++..-+.++            +..|......+..+......|+..+|...+..+...    
T Consensus        68 ~P~~~~lr~~~l~~L~~~~~w~~~~~~~------------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~----  131 (450)
T d1qsaa1          68 LPPARTLQSRFVNELARREDWRGLLAFS------------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT----  131 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHC------------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC----
T ss_pred             ChhHHHHHHHHHHHHHhccCHHHHHHhc------------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Confidence            6655555555555666677776543322            234555666677788889999999988776655321    


Q ss_pred             cCCCCchH---------------HHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHhh------ccCCCC
Q 008016          321 YGENDGRV---------------GMAMCSLAHAKCANGNAEEAVELYKK-----------ALRVIKDS------NYMSLD  368 (581)
Q Consensus       321 ~~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~-----------al~~~~~~------~~~~~~  368 (581)
                       +...|..               ...+..........|++..|......           .+.+....      ....+.
T Consensus       132 -~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~  210 (450)
T d1qsaa1         132 -GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGA  210 (450)
T ss_dssp             -SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCC
T ss_pred             -CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCC
Confidence             1111111               11122334455566777666554432           11111100      000111


Q ss_pred             ChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Q 008016          369 DSIMENMRIDLAELLHIVGRGQEGRELLEECLLITEKYKGKEHPSFVTHLLNLAASYSRSKNFVEAERLLRICLDIMTKT  448 (581)
Q Consensus       369 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  448 (581)
                      .+.. ......+..-....+.+.|...+......    ..............++......+..+.+...+......    
T Consensus       211 ~~~~-~~~~~~~l~rla~~d~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~----  281 (450)
T d1qsaa1         211 TDFT-RQMAAVAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----  281 (450)
T ss_dssp             CHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----
T ss_pred             Chhh-hHHHHHHHHHHhccChhHHHHHHHhhhhc----ccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc----
Confidence            1111 11122333333445677777666554332    11222233333444444455566777777776665431    


Q ss_pred             cCCCCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008016          449 VGPDDQSISFPMLHLGITLYHLNRDKEAEKLVLEALYIREIAFGKDSLPVGEALDCLVSIQTRLGEDDTKLLELLKRVLR  528 (581)
Q Consensus       449 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~~A~~~~~~a~~  528 (581)
                        .....   ....++......+++..+...+...        .+.........+.+|..+...|+.+ +|...|..+..
T Consensus       282 --~~~~~---~~~w~~~~al~~~~~~~~~~~~~~l--------~~~~~~~~r~~YW~gRa~~~~G~~~-~A~~~~~~~a~  347 (450)
T d1qsaa1         282 --SQSTS---LIERRVRMALGTGDRRGLNTWLARL--------PMEAKEKDEWRYWQADLLLERGREA-EAKEILHQLMQ  347 (450)
T ss_dssp             --CCCHH---HHHHHHHHHHHHTCHHHHHHHHHHS--------CTTGGGSHHHHHHHHHHHHHTTCHH-HHHHHHHHHHT
T ss_pred             --ccchH---HHHHHHHHHHHcCChHHHHHHHHhc--------CcccccHHHHHHHHHHHHHHcCChh-hHHHHHHHHhc
Confidence              11222   2222333455678988887776643        2333445678899999999999998 99999988653


Q ss_pred             H-------HHHhcCCC-------------CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH
Q 008016          529 I-------QEREFGSE-------------SEEVMLTLKKVVSYLDKLGRKEEKFPLKKRLS  569 (581)
Q Consensus       529 ~-------~~~~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  569 (581)
                      -       ....+|..             ..-........+..+...|+..+|...+..++
T Consensus       348 ~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~  408 (450)
T d1qsaa1         348 QRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLV  408 (450)
T ss_dssp             SCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            1       11112211             01111223345677889999999999887665

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=86.40  E-value=6.3  Score=30.97  Aligned_cols=184  Identities=11%  Similarity=0.011  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ..-.|+..-+.|+|++.++..++++++....     +..-...-.+.+..+|-. .|....+...+.....   . ....
T Consensus         7 ~~y~Akl~eqa~ryddm~~~mK~~v~~~~~~-----n~eLt~eERnLLsvayKn~i~~~R~s~R~i~~ie~---k-~~~~   77 (220)
T d2o8pa1           7 QKYRAQVFEWGGCFDKMFEALKSLIYLSEFE-----NSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQT---K-QLNN   77 (220)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-SCSC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHhhhccc-----CccCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---h-hccc
Confidence            4456778889999999999999988764321     011112223334444422 2334444444433221   1 1111


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRYGKTSILLVTSLLGMAKVLG-----SIGRAKKAVEIYHRVITI  274 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~  274 (581)
                      .....    +..-|. ..--.+-...+...+.+......++....+..+-..|..|.     ..|..++|...|++|..+
T Consensus        78 ~~~~~----~~~~y~-~~i~~el~~~c~~i~~lid~~L~~~~eskVFY~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~i  152 (220)
T d2o8pa1          78 DELVK----ICSEYV-FSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL  152 (220)
T ss_dssp             HHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             hhHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            11111    111111 11223344556666666655554443333333444454443     468889999999999999


Q ss_pred             HHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH
Q 008016          275 LELNRGTESADLVLPLFSLGSLFI-KEGKAVDAESVFSRILKIYT  318 (581)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~  318 (581)
                      ....+.+.+|.......+.+..++ -.++.++|.+..+.|.+.+.
T Consensus       153 a~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fd  197 (220)
T d2o8pa1         153 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILE  197 (220)
T ss_dssp             HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            887777777877776666666554 57999999998888855443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=85.24  E-value=7.7  Score=30.92  Aligned_cols=183  Identities=8%  Similarity=0.036  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHhhcCCCc
Q 008016          121 LFNEVKSMIMMGNKNDAIDLLQANYEAVKEQINAGNKGIEEVAILDIIALGYVY-IGDLKFVQSLLDMMSGIVDSLKDDE  199 (581)
Q Consensus       121 l~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~  199 (581)
                      ++.+|+..-+.++|++.+.+..++++.       ..+..-...-.+.+..+|-. .|....+...+.......+.  ...
T Consensus         7 lv~~AklaeqaeRy~dm~~~mk~v~~~-------~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~--~~~   77 (236)
T d1o9da_           7 NVYMAKLAEQAERYEEMVEFMEKVSNS-------LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEES--RGN   77 (236)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT-------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-------cCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHc--cCC
Confidence            667777788889999999999888754       11111122223344444432 24444555555443332211  111


Q ss_pred             chHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHhc-----C-----CHHHHHH
Q 008016          200 PLLDAILLHMGSMYSTLENYEKSMLVYQRVINVLESRY---GKTSILLVTSLLGMAKVLGSI-----G-----RAKKAVE  266 (581)
Q Consensus       200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~  266 (581)
                      +....    +..-| +..=-++=...+..++++.....   ..+....+..+...|..|...     |     -.++|..
T Consensus        78 ~~~~~----~i~~y-k~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~  152 (236)
T d1o9da_          78 EEHVN----SIREY-RSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLT  152 (236)
T ss_dssp             HHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHH
Confidence            11111    11111 11111223334444554443221   112223333344445544322     2     2467889


Q ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 008016          267 IYHRVITILELNRGTESADLVLPLFSLGSLFIK-EGKAVDAESVFSRILKIY  317 (581)
Q Consensus       267 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  317 (581)
                      .|++|.++....+.+.+|.......+.+..|+. .|+.++|....++++...
T Consensus       153 aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         153 AYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999998887788888887777777777765 599999998888777643

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.25  E-value=8.5  Score=30.63  Aligned_cols=186  Identities=12%  Similarity=0.018  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHcCCC
Q 008016          162 VAILDIIALGYVYIGDLKFVQSLLDMMSGIVDSLKDDEPLLDAILLHMGSMYS-TLENYEKSMLVYQRVINVLESRYGKT  240 (581)
Q Consensus       162 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~  240 (581)
                      ..-+..++.+..+.++|++...+..++......  +.-.  ..=.+.+..+|- ..|....+...+........   ...
T Consensus         4 Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~--~~Ls--~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~---~~~   76 (236)
T d1o9da_           4 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGS--EELT--VEERNLLSVAYKNVIGARRASWRIISSIEQKEE---SRG   76 (236)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSS--SCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC--CCCC--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH---ccC
Confidence            344667888888899999999999888765210  1101  111123333332 23444445544443222111   111


Q ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCChhh-HHHHHHHHHHHHHc-----CC-----HHHHH
Q 008016          241 SILLVTSLLGMAKVLGSIGRAKKAVEIYHRVITILELNRG--TESADL-VLPLFSLGSLFIKE-----GK-----AVDAE  307 (581)
Q Consensus       241 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~-~~~~~~la~~~~~~-----g~-----~~~A~  307 (581)
                      .+.....    ..-|. ..--++=...+..++++....+-  ..++.. +..+...|..|...     |+     .+.|.
T Consensus        77 ~~~~~~~----i~~yk-~kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~  151 (236)
T d1o9da_          77 NEEHVNS----IREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL  151 (236)
T ss_dssp             CHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             ChHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHH
Confidence            2211111    11111 01112223344555554433211  122222 22333445554432     22     45788


Q ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 008016          308 SVFSRILKIYTKVYGENDGRVGMAMCSLAHAKCA-NGNAEEAVELYKKALRVI  359 (581)
Q Consensus       308 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~  359 (581)
                      ..|++|.++....+.+.+|.......|.+..|+. .|+.++|..+.+++++..
T Consensus       152 ~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a  204 (236)
T d1o9da_         152 TAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA  204 (236)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999888888888877777777766665 699999999888887653