Citrus Sinensis ID: 008020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEKL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGEMVSWTVADAvdykgfpadrsktggwvpaALSLGIEICERLSTMGIAVNLVTYLggtmhlpsatsaniVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAistkqpqlrpppcqatditkcqhasgiQMGVLYISLYLIALGtgglkssvsgfgtdqfdekdeKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEvgrswgygicSICMFTAILIFLSgtrryrykkcsgspivHICQVVVAARKKRkvelpsstaslyedypeesriqhtyqfrcldkasvvtntdysedgafvsnpwtlcpvtrVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRsignfkipaasLTVFFVAAILITLGAYDRLIIPLlkkrkgkpgfsnLQLIAIGLFLSALGMASASVVEVKRLAVAKangttgttlpISVFYLIpqfflvgsgegfmytgqldffitqspkgmktmSTGLFLTTLSLGFFFSSLLVSIVKAatgsngkhgwvgeninkgrLDCFYGLLAALSFINFGLFLLCASWYkrkkakqvpemEIIVKgssveekl
Flexible Loop (DISEMBL)
MGEMVSWTVADAVDYKgfpadrsktggwvPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKcsgspivhICQVVVAARkkrkvelpsstaslyedypeesrIQHTYQFRCLDKASVVTNTDysedgafvsnpwtlcpVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKAngttgttlpisVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAatgsngkhgwvgeNINKGRLDCFYGLLAALSFINFGLFLLCASWYkrkkakqvpemeiivkgssveekl
Low Complexity Region (SEG)
MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQvvvaarkkrkvELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMstglflttlslgfffssllVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEKL
Disordered region (IsUnstruct)
****VSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQ******PCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGF**************QMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKR**********LYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK******I***********
Disordered Region (DISOPRED)
*****SW*VADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC************GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKD***KTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTAS******************CL***********************LCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK***********************
Disordered Region (DISEMBL)
MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEKL
Disordered Region (DISPRO)
**********DAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKA*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
Q9SZY4	577	Nitrate transporter 1.4 O	yes	no	0.979	0.986	0.697	0.0
Q05085	590	Nitrate transporter 1.1 O	no	no	0.955	0.940	0.545	1e-173
Q9LVE0	590	Nitrate transporter 1.3 O	no	no	0.924	0.910	0.492	1e-140
Q9M390	570	Peptide transporter PTR1	no	no	0.956	0.975	0.434	1e-130
Q9LFB8	570	Peptide transporter PTR5	no	no	0.932	0.950	0.433	1e-128
P46032	585	Peptide transporter PTR2	no	no	0.939	0.933	0.428	1e-125
Q93Z20	590	Probable peptide/nitrate	no	no	0.934	0.920	0.406	1e-119
Q8GXN2	589	Nitrate transporter 1.8 O	no	no	0.948	0.935	0.391	1e-109
Q9LQL2	614	Nitrate transporter 1.5 O	no	no	0.956	0.905	0.377	1e-108
Q93VV5	591	Probable peptide/nitrate	no	no	0.929	0.913	0.381	1e-105

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/576 (69%), Positives = 469/576 (81%), Gaps = 7/576 (1%)

Query: 6   SWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSA 65
           SWTVADAVDYKG PAD+SKTGGW+ AAL LGIE+ ERLSTMGIAVNLVTYL  TMHLPS+
Sbjct: 6   SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query: 66  TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPP 125
           TSANIVTDFMGTSFLLCLLGGFLADSFLGR++TI IF+T+Q  GTG LA++TK P+LRPP
Sbjct: 66  TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query: 126 PCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185
            C   +   C  A+  QM +LY+SLYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct: 126 TCHHGE--ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query: 186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCS 245
           FF+RFFF IS GTL+AVTVLVY+QDEVGRSW YGIC++ M  AI+IFL GT+RYRYKK  
Sbjct: 184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query: 246 GSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYS 305
           GSP+V I QV+ AA +KRK+ELP S   LYED PE  RI+HT QF  LDKA++V   D+ 
Sbjct: 244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query: 306 E--DGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRS 363
           +  DG  + NPW L  VT+VEEVKM++RLLPIWATTI+FW+TYAQMITFSVEQA+TM+R+
Sbjct: 304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query: 364 IGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM 423
           IG+FKIPA SLTVFFVAAILITL  YDR I+P  KK KGKPGFS+LQ IAIGL LS  GM
Sbjct: 364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query: 424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG 483
           A+A++VE KRL+VAK+  ++  TLPISVF L+PQFFLVG+GE F+YTGQLDFFITQSPKG
Sbjct: 424 AAAALVEQKRLSVAKS--SSQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query: 484 MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALS 543
           MKTMSTGLFLTTLSLGFF SS LVSIVK  T ++   GW+ +NIN GRLD FY LL  LS
Sbjct: 482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query: 544 FINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEE 579
            INF ++++CA W+K  K K   E E   KG SVE+
Sbjct: 542 GINFVVYIICALWFKPTKGKDSVEKE-NGKGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  607 bits (1566), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 311/570 (54%), Positives = 411/570 (72%), Gaps = 15/570 (2%)

Query: 11  DAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI 70
           DA D++G PADRSKTGGW  AA+ L IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct: 14  DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query: 71  VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130
           VT+F+GTSF+LCLLGGF+AD+FLGRY TIAIFA +Q  G  +L +ST  P LRPP C  T
Sbjct: 74  VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query: 131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190
             + C+ ASGIQ+ VLY++LYL ALGTGG+K+SVSGFG+DQFDE + KE+++M YFF+RF
Sbjct: 134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query: 191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIV 250
           FF I+ G+L+AVTVLVY+QD+VGR WGYGIC+  +  A+ +FL+GT RYR+KK  GSP+ 
Sbjct: 194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query: 251 HICQVVVAARKKRKVELPSSTASLYE---------DYPEESRIQHTYQFRCLDKASVVTN 301
            +  V+VAA + RK+ELP+  + LY+             + ++ HT QFR LDKA++   
Sbjct: 254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQ 313

Query: 302 TDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQ 361
                   F  N WTL  +T VEEVK ++R+LPIWAT ILFW+ +AQ+ T SV Q+ T+ 
Sbjct: 314 EAGVTSNVF--NKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLD 371

Query: 362 RSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSA 420
           RSIG+F+IP AS+ VF+V  +L+T   YDR+ I L KK    P G   LQ I +GLF  +
Sbjct: 372 RSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGS 431

Query: 421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS 480
           + MA A++VE+KRL  A A+G T  TLP+  + LIPQ+ +VG GE  +YTGQLDFF+ + 
Sbjct: 432 MAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLREC 491

Query: 481 PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLA 540
           PKGMK MSTGL L+TL+LGFFFSS+LV+IV+  TG    H W+ +++NKGRL  FY L+A
Sbjct: 492 PKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGK--AHPWIADDLNKGRLYNFYWLVA 549

Query: 541 ALSFINFGLFLLCASWYKRKKAKQVPEMEI 570
            L  +NF +FL+ + WY  K+ K++ E+ I
Sbjct: 550 VLVALNFLIFLVFSKWYVYKE-KRLAEVGI 578

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  499 bits (1284), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 274/556 (49%), Positives = 369/556 (66%), Gaps = 19/556 (3%)

Query: 11  DAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI 70
           +A DY+G P D+SKTGGW+ A L LG E+ ER+  MGI++NLVTYL G +H+ SA SA I
Sbjct: 16  EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query: 71  VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130
           VT+FMGT  LL LLGGFLAD+ LGRY+ +AI A+V   G  LL ++T    +RPP C   
Sbjct: 76  VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICD-- 133

Query: 131 DITKCQH----ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186
           D  +  H    A+G Q+ +LY++LY IALG GG+KS+VSGFG+DQFD  D KE+ QM +F
Sbjct: 134 DFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFF 193

Query: 187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG 246
           F+RF+F IS G+L AV  LVY+QD VGR WGYGI +  M  A ++ L GT+RYR+KK  G
Sbjct: 194 FNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKG 253

Query: 247 SPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSE 306
           SP   I +V   A KKRK   P+   SL   Y + + + HT   +CLDKA++  N     
Sbjct: 254 SPFTTIWRVGFLAWKKRKESYPAH-PSLLNGY-DNTTVPHTEMLKCLDKAAISKNESSPS 311

Query: 307 DGAFVS-NPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG 365
              F   +PW +  VT+VEEVK+V++L+PIWAT ILFW+ Y+QM TF+VEQAT M R +G
Sbjct: 312 SKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLG 371

Query: 366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSALGMA 424
           +F +PA S + F +  IL+     +R+ +PL ++   KP G ++LQ I +GL  S   MA
Sbjct: 372 SFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMA 431

Query: 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484
            A+V+E  R   A  N        IS F+L+PQ+FLVG+GE F Y GQL+FFI ++P+ M
Sbjct: 432 VAAVIENARREAAVNNDKK-----ISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERM 486

Query: 485 KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544
           K+MSTGLFL+T+S+GFF SSLLVS+V   T  +    W+  N+NK RL+ FY LL  L  
Sbjct: 487 KSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKS----WLRSNLNKARLNYFYWLLVVLGA 542

Query: 545 INFGLFLLCASWYKRK 560
           +NF +F++ A  ++ K
Sbjct: 543 LNFLIFIVFAMKHQYK 558

Low-affinity nitrate transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  467 bits (1201), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/571 (43%), Positives = 356/571 (62%), Gaps = 15/571 (2%)

Query: 1   MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM 60
           M E   +T    VD    PA++ KTG W      LG E CERL+  G+  NLV YL   +
Sbjct: 1   MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query: 61  HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120
           +  +AT+AN VT++ GT ++  L+G F+AD++LGRY TIA F  +   G  LL +S   P
Sbjct: 61  NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query: 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180
            L+P  C A     C H +  Q  V +++LY+IALGTGG+K  VS FG DQFDE DE EK
Sbjct: 121 GLKPGNCNAD---TC-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query: 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYR 240
            + + FF+ F+F I+ G L+A TVLV+IQ  VG  WG+G+ ++ M  A+  F  G+R YR
Sbjct: 177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query: 241 YKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQ------HTYQFRCLD 294
            ++  GSP+  I QV+VAA +K  V++P   + L+E   +ES I+      HT   +  D
Sbjct: 237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFD 296

Query: 295 KASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSV 354
           KA+V + +D  +DG    NPW LC VT+VEE+K +I LLP+WAT I+F + Y+QM T  V
Sbjct: 297 KAAVESQSDSIKDGEV--NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFV 354

Query: 355 EQATTMQRSIG-NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKK-RKGKPGFSNLQLI 412
            Q  TM + +G NF+IP+ASL++F   ++L     YD+ IIPL +K  + + GF+ LQ +
Sbjct: 355 LQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRM 414

Query: 413 AIGLFLSALGMASASVVEVKRLAVAKA-NGTTGTTLPISVFYLIPQFFLVGSGEGFMYTG 471
            IGL +S   M +A V+EV RL   K  N      + +S+F+ IPQ+ L+G  E F + G
Sbjct: 415 GIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIG 474

Query: 472 QLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGR 531
           QL+FF  Q+P  M+++ + L LTT++LG + S++LV++V   T  NGK GW+ +N+N+G 
Sbjct: 475 QLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGH 534

Query: 532 LDCFYGLLAALSFINFGLFLLCASWYKRKKA 562
           LD F+ LLA LSF+NF ++L  +  YK KKA
Sbjct: 535 LDYFFYLLATLSFLNFLVYLWISKRYKYKKA 565

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/558 (43%), Positives = 350/558 (62%), Gaps = 16/558 (2%)

Query: 13  VDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVT 72
           +D    PA+++KTG W      LG E CERL+  G++ NL+ YL   M++ + +++  V+
Sbjct: 14  LDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVS 73

Query: 73  DFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDI 132
           ++ GT +   L+G F+AD++LGRY TIA F  +   G  LL IS   P L P     T  
Sbjct: 74  NWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET-- 131

Query: 133 TKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192
             C HA+  Q  + +I+LYLIALGTGG+K  VS FG DQFD+ DEKEK   + FF+ F+F
Sbjct: 132 --C-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHI 252
           VI+ G ++A +VLV+IQ  VG  WG G+ ++ M  A++ F +G+  YR +K  GSP+  +
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 253 CQVVVAARKKRKVELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVTNTDYSE 306
            QV+VA+ +K KV++P   + LYE+   ES      +++HT      DKA+V T +D   
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESD--N 306

Query: 307 DGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG- 365
            GA  S+ W LC VT+VEE+K +IRLLPIWAT I+F S Y+QM T  V Q  T+ + +G 
Sbjct: 307 KGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGP 366

Query: 366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSALGMA 424
           NFKIP+ASL++F   ++L     YD+LI+P  +K  G   GF+ LQ I IGL +S   M 
Sbjct: 367 NFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMV 426

Query: 425 SASVVEVKRLA-VAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG 483
           SA ++EV RL  V   N     T+P+++F+ +PQ+FLVG  E F + GQL+FF  Q+P  
Sbjct: 427 SAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDA 486

Query: 484 MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALS 543
           M+++ + L LT ++ G + S+ LV++V   T S G+ GW+ +N+N G LD F+ LLA LS
Sbjct: 487 MRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLS 546

Query: 544 FINFGLFLLCASWYKRKK 561
           F+NF ++L  A WY  KK
Sbjct: 547 FLNFLVYLWIAKWYTYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/560 (42%), Positives = 351/560 (62%), Gaps = 14/560 (2%)

Query: 12  AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV 71
           +VD+ G P  + KTG W      LG E CERL+  GIA NL+TYL   +H  + ++A  V
Sbjct: 29  SVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 72  TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131
           T + GT +L  L+G  LAD++ GRY TIA F+ +   G   L +S   P L+P  C    
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD- 147

Query: 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191
              C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A FF+ F+
Sbjct: 148 --FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFY 205

Query: 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVH 251
           F I+ G L++ ++LV+IQ+  G   G+GI ++ M  AI  F  GT  YR++K  GSPI  
Sbjct: 206 FSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITR 265

Query: 252 ICQVVVAARKKRKVELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVTNTDYS 305
           I QVVVA+ +K  V++P     LYE   + S      +I+HT   + LDKA+V++  + S
Sbjct: 266 ISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEE-S 324

Query: 306 EDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG 365
           + G + SN W LC VT+VEE+K++IR+ PIWA+ I+F + YAQM T  V+Q   M   IG
Sbjct: 325 KSGDY-SNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG 383

Query: 366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG-KPGFSNLQLIAIGLFLSALGMA 424
           +F++P A+L  F  A+++I +  YDR I+PL +K  G   GF+ +Q + IGLF+S L MA
Sbjct: 384 SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMA 443

Query: 425 SASVVEVKRLAVAKANG--TTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK 482
           +A++VE+ RL +A   G   +G  +PISV + IPQ+F++G+ E F + GQL+FF  QSP 
Sbjct: 444 AAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPD 503

Query: 483 GMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAAL 542
            M+++ + L L T +LG + SSL++++V   T  NG+ GW+ +N+N G LD F+ LLA L
Sbjct: 504 AMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGL 563

Query: 543 SFINFGLFLLCASWYKRKKA 562
           S +N  ++   A+ YK+KKA
Sbjct: 564 SLVNMAVYFFSAARYKQKKA 583

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 346/558 (62%), Gaps = 15/558 (2%)

Query: 12  AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV 71
           ++D  G P  + KTG W      LG E CERL+  GIA NL+TY    +H  + ++A+ V
Sbjct: 40  SIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDV 99

Query: 72  TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131
             + GT ++  L+G  +ADS+ GRY TIA F+ +   G  LL +S   P L+P  C    
Sbjct: 100 MIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVA 159

Query: 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191
              C  A+ +Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A FF+ F+
Sbjct: 160 AALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFY 219

Query: 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVH 251
           F I+ G+ ++ T+LV++Q+ VG   G+ I ++ M  +I  F  GT  YR++K  GSPI  
Sbjct: 220 FSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITR 279

Query: 252 ICQVVVAARKKRKVELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVTNTDYS 305
           +CQV+VAA +K K+ LP   + LYE   + S      +IQHT  ++ LDKA+V++  + S
Sbjct: 280 VCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYE-S 338

Query: 306 EDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG 365
           + GAF SNPW LC VT+VEEVK +IR+ PIWA+ I++   Y+Q+ T  V+Q  +M R I 
Sbjct: 339 KSGAF-SNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIR 397

Query: 366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSALGMA 424
           +F+IP AS  VF    +LI++  YDR ++P +++  G P G ++LQ + IGLFLS L +A
Sbjct: 398 SFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIA 457

Query: 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484
           +A++VE  RL +A+        + +S+F+ IPQ+ L+G  E F + G+++FF  +SP  M
Sbjct: 458 AAAIVETVRLQLAQ------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAM 511

Query: 485 KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544
           +++ + L L   ++G + SSL++++V   T   GK GWV +++NKG LD F+ LL +L  
Sbjct: 512 RSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGL 571

Query: 545 INFGLFLLCASWYKRKKA 562
           +N  ++ L    + +KKA
Sbjct: 572 VNIPVYALICVKHTKKKA 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXN2|PTR47_ARATH Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/562 (39%), Positives = 336/562 (59%), Gaps = 11/562 (1%)

Query: 12  AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV 71
           +VD  G PA R+ TG W+ A L L  +    L+  G+ VNLV +L   M   +A +AN V
Sbjct: 16  SVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNV 75

Query: 72  TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131
           + + GT ++  LLG FL+DS+ GRY+T AIF      G  +L++ST    L P  C   D
Sbjct: 76  SKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVED 135

Query: 132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191
            + C+  S  +  + Y+S+YLIALG GG + +++ FG DQFD +D  E      FFS F+
Sbjct: 136 -SPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFY 194

Query: 192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVH 251
             ++ G+L + TVL Y +D+     G+   +   F  +++FL GT +YR+     SP   
Sbjct: 195 LALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSR 254

Query: 252 ICQVVVAARKKRKVELPSSTASLYE---DYPEESRIQHTYQFRCLDKASVVTNTDYSE-- 306
            CQV+VAA +K K+++     +LY+    Y  + +I HT  FR LD+A++VT  D +E  
Sbjct: 255 FCQVLVAATRKAKIDVHHEELNLYDSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKV 314

Query: 307 DGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN 366
           +     +PW LC VT+VEEVK V+RLLPIW  TIL+   + QM +  V Q   M+ +I N
Sbjct: 315 ESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKN 374

Query: 367 FKIPAASLTVFFVAAILITLGAYDRLIIPL---LKKRKGKPGFSNLQLIAIGLFLSALGM 423
           F+IPA+S++ F + ++   + AY R + PL   L K +   G + LQ + IGL ++ + M
Sbjct: 375 FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAM 434

Query: 424 ASASVVEVKRLAVAKANGTTGTTLPISV--FYLIPQFFLVGSGEGFMYTGQLDFFITQSP 481
            SA +VE+ RL   +    T  +   ++  F+ +PQ+ L+G+ E FMY GQL+FF +Q+P
Sbjct: 435 ISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAP 494

Query: 482 KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAA 541
            G+K+ ++ L + ++SLG + SSLLVSIV   + ++  HGW+ EN+NKG L+ FY LLA 
Sbjct: 495 TGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAG 554

Query: 542 LSFINFGLFLLCASWYKRKKAK 563
           L+  +F ++L+CA WYK  K++
Sbjct: 555 LTAADFVVYLICAKWYKYIKSE 576

Low-affinity nitrate transporter. Involved in nitrate removal from xylem sap. Not involved in oligopeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 333/569 (58%), Gaps = 13/569 (2%)

Query: 13  VDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVT 72
           VDY G P+ RS +G WV   + L  +    L+  G+ VNLV +L   +   +A +AN V+
Sbjct: 26  VDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVS 85

Query: 73  DFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDI 132
            + GT ++  L+G FL+DS+ GRY+T AIF  +   G   L++S+    +RP  C   ++
Sbjct: 86  KWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGC-GDEV 144

Query: 133 TKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192
           T C   S +++ + Y S+YLIALG GG + +++  G DQFDE+  KE      FFS F+ 
Sbjct: 145 TPCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYL 204

Query: 193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHI 252
            ++ G+L + T+L Y +DE   + G+   +      +++FL GT RYRY K +G+P+   
Sbjct: 205 ALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRF 264

Query: 253 CQVVVAARKKRKVELP-SSTASLYEDYPEES--------RIQHTYQFRCLDKASVVTNTD 303
           CQV+VAA KK  VE P      +Y+   E          RI HT +F+ LDKA+ +T  D
Sbjct: 265 CQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARD 324

Query: 304 YSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRS 363
             +      NPW LCPVT+VEEVK ++RL+PIW  TI++   + QM +  VEQ   M  S
Sbjct: 325 LDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTS 384

Query: 364 IGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLK--KRKGKPGFSNLQLIAIGLFLSAL 421
           + +FKIP AS++ F + ++ + +  Y R++ P+    K+ G  G + L  + IGL ++ +
Sbjct: 385 VSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVI 444

Query: 422 GMASASVVEVKRLAVAKANGT-TGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS 480
            M +A +VE  RL  A  + T    +  +S+F+  PQ+ L+G+ E FMY GQL+FF  Q+
Sbjct: 445 AMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQT 504

Query: 481 PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLA 540
           P G+K+  + L + ++S+G F SSLLV++V   +  +   GW+  N+NKG LD FY LLA
Sbjct: 505 PDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLA 564

Query: 541 ALSFINFGLFLLCASWYKRKKAKQVPEME 569
           AL+ I+  +++ CA WYK  + +   EM+
Sbjct: 565 ALTSIDLVVYIACAKWYKPIQLEGKDEMQ 593

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 329/564 (58%), Gaps = 24/564 (4%)

Query: 6   SWTVAD--AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP 63
           +W +A+  +VD++G P++ +K GG   A   LG++  E +    +  NL+TY+   MH P
Sbjct: 21  NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query: 64  SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123
            + +ANIVT+F+GT F+  LLGG+L+D+FLG + TI IF  V+  G  LL++    PQL+
Sbjct: 81  LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query: 124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183
           PP C       C+ A G +  + +++LYL+ALG+G +K ++   G DQF +   K+  ++
Sbjct: 141 PPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRL 200

Query: 184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKK 243
           + +F+  +F  S G L+A+T+LV++Q   G   G+G+ +  M   I+  +SGT  +R K+
Sbjct: 201 SSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKR 260

Query: 244 CSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYP------EESRIQHTYQFRCLDKAS 297
              S    I  V+VAA  KRK+  PS    L+ D+         S + HT +FR LDKA 
Sbjct: 261 PRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKAC 320

Query: 298 V-VTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQ 356
           + + +T+  E      +PW LC VT+VE+VK +I L+PI+A+TI+F +  AQ+ TFSV+Q
Sbjct: 321 IKIQDTNTKE------SPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQ 374

Query: 357 ATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG-KPGFSNLQLIAI 414
            ++M   + N F IP ASL       ++  +  YD  ++P  +K  G   G   L  I I
Sbjct: 375 GSSMNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGI 434

Query: 415 GLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLD 474
           GLFLS   M SA+++E KR   +  +G       +S+F++ PQF + G  E F   G ++
Sbjct: 435 GLFLSTFSMVSAAMLEKKRRDSSVLDGRI-----LSIFWITPQFLIFGISEMFTAVGLIE 489

Query: 475 FFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSN-GKHGWVGEN-INKGRL 532
           FF  QS KGM++    L   + S GF+FSS+LVS+V   T ++    GW+GEN +NK RL
Sbjct: 490 FFYKQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRL 549

Query: 533 DCFYGLLAALSFINFGLFLLCASW 556
           D FY LLA LS +NF  +L  + W
Sbjct: 550 DLFYWLLAVLSLLNFLSYLFWSRW 573

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
449493693	623	PREDICTED: nitrate transporter 1.4-like	0.986	0.919	0.724	0.0
449443301	623	PREDICTED: nitrate transporter 1.4-like	0.986	0.919	0.724	0.0
402810586	581	nitrate transporter [Cucumis sativus]	0.986	0.986	0.724	0.0
225445474	580	PREDICTED: nitrate transporter 1.4-like	0.989	0.991	0.743	0.0
297738942	576	unnamed protein product [Vitis vinifera]	0.989	0.998	0.743	0.0
255566995	581	oligopeptide transporter, putative [Rici	0.993	0.993	0.744	0.0
356563024	581	PREDICTED: nitrate transporter 1.4-like	0.989	0.989	0.714	0.0
356548591	581	PREDICTED: nitrate transporter 1.4-like	0.977	0.977	0.724	0.0
357478055	577	Nitrate transporter [Medicago truncatula	0.987	0.994	0.730	0.0
449466528	599	PREDICTED: nitrate transporter 1.4-like	0.989	0.959	0.729	0.0

>gi|449493693|ref|XP_004159415.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/573 (72%), Positives = 475/573 (82%)

Query: 8   TVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATS 67
           TVADAVDYKG PA+RSKTGGWVPAAL +GIE+CERLSTMGIAVNLVTYL GT+HLPSA S
Sbjct: 50  TVADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANS 109

Query: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC 127
           ANIVTDFMGT FLL +LGGFLADSFLGRY+TIAIFA++QT GTG LA+ TK PQL PPPC
Sbjct: 110 ANIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPC 169

Query: 128 QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187
                  C+ A+G QMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF
Sbjct: 170 HPIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFF 229

Query: 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS 247
           +RFF  +S+GTL+AVTVLVY+QDEVGRSW YGICS+ MFTAILIFL GT+RYRYK   GS
Sbjct: 230 NRFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGS 289

Query: 248 PIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSED 307
           PIVHI QV+VAA  KRK+EL  +   LYED    SRI HT QF+ LDKA++V + D+ + 
Sbjct: 290 PIVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKS 349

Query: 308 GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNF 367
            +   NPW LC VTRVEEVKM++RLLPIWATTI+FW+TYAQMITFSV QA+TM+RS+GNF
Sbjct: 350 VSSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNF 409

Query: 368 KIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS 427
           KIPA SL VFFVAAILITL  YDRLI+PL KK KG+PGF+NLQ IAIGL LS  GMA+A+
Sbjct: 410 KIPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAA 469

Query: 428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTM 487
           +VE+KRL+VAKA G +  TLP+SVF LIPQFFLVGSGE F+YTGQLDFFITQSPKGMKTM
Sbjct: 470 LVEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTM 529

Query: 488 STGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINF 547
           STGLFLTTLSLGFF SS LV++VK+ TGS    GW+ +NIN  RLDCFYGLL  LS INF
Sbjct: 530 STGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINF 589

Query: 548 GLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
             FL+CA WYK +K KQ+ EME    G S  EK
Sbjct: 590 VAFLVCAIWYKPQKPKQLLEMETSTNGGSGAEK 622

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443301|ref|XP_004139418.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/573 (72%), Positives = 475/573 (82%)

Query: 8   TVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATS 67
           TVADAVDYKG PA+RSKTGGWVPAAL +GIE+CERLSTMGIAVNLVTYL GT+HLPSA S
Sbjct: 50  TVADAVDYKGCPANRSKTGGWVPAALVVGIELCERLSTMGIAVNLVTYLVGTLHLPSANS 109

Query: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC 127
           ANIVTDFMGT FLL +LGGFLADSFLGRY+TIAIFA++QT GTG LA+ TK PQL PPPC
Sbjct: 110 ANIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPC 169

Query: 128 QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187
                  C+ A+G QMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF
Sbjct: 170 HPIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFF 229

Query: 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS 247
           +RFF  +S+GTL+AVTVLVY+QDEVGRSW YGICS+ MFTAILIFL GT+RYRYK   GS
Sbjct: 230 NRFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGS 289

Query: 248 PIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSED 307
           PIVHI QV+VAA  KRK+EL  +   LYED    SRI HT QF+ LDKA++V + D+ + 
Sbjct: 290 PIVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKS 349

Query: 308 GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNF 367
            +   NPW LC VTRVEEVKM++RLLPIWATTI+FW+TYAQMITFSV QA+TM+RS+GNF
Sbjct: 350 VSSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNF 409

Query: 368 KIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS 427
           KIPA SL VFFVAAILITL  YDRLI+PL KK KG+PGF+NLQ IAIGL LS  GMA+A+
Sbjct: 410 KIPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAA 469

Query: 428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTM 487
           +VE+KRL+VAKA G +  TLP+SVF LIPQFFLVGSGE F+YTGQLDFFITQSPKGMKTM
Sbjct: 470 LVEMKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTM 529

Query: 488 STGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINF 547
           STGLFLTTLSLGFF SS LV++VK+ TGS    GW+ +NIN  RLDCFYGLL  LS INF
Sbjct: 530 STGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSTINF 589

Query: 548 GLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
             FL+CA WYK +K KQ+ EME    G S  EK
Sbjct: 590 VAFLVCAIWYKPQKPKQLLEMETSTNGGSGAEK 622

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810586|gb|AFR11354.1| nitrate transporter [Cucumis sativus]

 Score =  852 bits (2200), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/573 (72%), Positives = 475/573 (82%)

Query: 8   TVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATS 67
           TVADAVDYKG PA+RSKTGGWVPAAL +GIE+CERLSTMGIAVNLVTYL GT+HLPSA S
Sbjct: 8   TVADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANS 67

Query: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC 127
           ANIVTDFMGT FLL +LGGFLADSFLGRY+TIAIFA++QT GTG LA+ TK PQL PPPC
Sbjct: 68  ANIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPC 127

Query: 128 QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF 187
                  C+ A+G QMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF
Sbjct: 128 HPIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFF 187

Query: 188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS 247
           +RFF  +S+GTL+AVTVLVY+QDEVGRSW YGICS+ MFTAILIFL GT+RYRYK   GS
Sbjct: 188 NRFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGS 247

Query: 248 PIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSED 307
           PIVHI QV+VAA  KRK+EL  +   LYED    SRI HT QF+ LDKA++V + D+ + 
Sbjct: 248 PIVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKS 307

Query: 308 GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNF 367
            +   NPW LC VTRVEEVKM++RLLPIWATTI+FW+TYAQMITFSV QA+TM+RS+GNF
Sbjct: 308 VSSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNF 367

Query: 368 KIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS 427
           KIPA SL VFFVAAILITL  YDRLI+PL KK KG+PGF+NLQ IAIGL LS  GMA+A+
Sbjct: 368 KIPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAA 427

Query: 428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTM 487
           +VE+KRL+VAKA G +  TLP+SVF LIPQFFLVGSGE F+YTGQLDFFITQSPKGMKTM
Sbjct: 428 LVEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTM 487

Query: 488 STGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINF 547
           STGLFLTTLSLGFF SS LV++VK+ TGS    GW+ +NIN  RLDCFYGLL  LS INF
Sbjct: 488 STGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINF 547

Query: 548 GLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
             FL+CA WYK +K KQ+ EME    G S  EK
Sbjct: 548 VAFLVCAIWYKPQKPKQLLEMETSTNGGSGAEK 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445474|ref|XP_002281975.1| PREDICTED: nitrate transporter 1.4-like [Vitis vinifera]

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/576 (74%), Positives = 486/576 (84%), Gaps = 1/576 (0%)

Query: 5   VSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPS 64
           +SWTVADAVDYKGFPADRSKTGGWVPAAL LGIEICERLSTMGIAVNLVTYL  TMHLPS
Sbjct: 5   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 64

Query: 65  ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124
           ATSAN VTDFMGTSFLLCLLGGFLADSFLGR+RTIAIFATVQ  GTG+LAI T+ PQL+P
Sbjct: 65  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 124

Query: 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184
           PPC+ T    C+ A+G QMG+LY++LYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 125 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 184

Query: 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKC 244
           YFFSRFFF ISTGTLMAVTVLVYIQDEV RS GYGIC + M  AIL++ SGT+RYRYKK 
Sbjct: 185 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 244

Query: 245 SGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDY 304
            GSPIVHI QV+VAA +KRK++LP + + LYED  E SRIQHT QFRCLDKA+++   ++
Sbjct: 245 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAG-EF 303

Query: 305 SEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSI 364
            +  +   NPW LC VTRVEEVKM+ RLLPIWATTI+FW+TYAQMITFSVEQA+TM+RSI
Sbjct: 304 DKTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSI 363

Query: 365 GNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424
           GNF+IPA SLTVFFVAAILITL  YDR I+P+ KK +GKPGFS+LQ IA+GL LS +GM 
Sbjct: 364 GNFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMT 423

Query: 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484
           +A++ E +RL+VAKA G    TLPISVF LIPQFFLVGSGE F+YTGQLDFFITQSPKGM
Sbjct: 424 AAALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGM 483

Query: 485 KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544
           KTMSTGLFL+TLSLGFF SS LVS+VK  TGS    GW+ +NIN GRLDCFYGLLA LSF
Sbjct: 484 KTMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSF 543

Query: 545 INFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
           INF +FL+CA WYK +K     +ME +  GS  EEK
Sbjct: 544 INFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEK 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738942|emb|CBI28187.3| unnamed protein product [Vitis vinifera]

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/576 (74%), Positives = 486/576 (84%), Gaps = 1/576 (0%)

Query: 5   VSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPS 64
           +SWTVADAVDYKGFPADRSKTGGWVPAAL LGIEICERLSTMGIAVNLVTYL  TMHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 60

Query: 65  ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124
           ATSAN VTDFMGTSFLLCLLGGFLADSFLGR+RTIAIFATVQ  GTG+LAI T+ PQL+P
Sbjct: 61  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 120

Query: 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184
           PPC+ T    C+ A+G QMG+LY++LYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 121 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 180

Query: 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKC 244
           YFFSRFFF ISTGTLMAVTVLVYIQDEV RS GYGIC + M  AIL++ SGT+RYRYKK 
Sbjct: 181 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 240

Query: 245 SGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDY 304
            GSPIVHI QV+VAA +KRK++LP + + LYED  E SRIQHT QFRCLDKA+++   ++
Sbjct: 241 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAG-EF 299

Query: 305 SEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSI 364
            +  +   NPW LC VTRVEEVKM+ RLLPIWATTI+FW+TYAQMITFSVEQA+TM+RSI
Sbjct: 300 DKTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSI 359

Query: 365 GNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA 424
           GNF+IPA SLTVFFVAAILITL  YDR I+P+ KK +GKPGFS+LQ IA+GL LS +GM 
Sbjct: 360 GNFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMT 419

Query: 425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484
           +A++ E +RL+VAKA G    TLPISVF LIPQFFLVGSGE F+YTGQLDFFITQSPKGM
Sbjct: 420 AAALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGM 479

Query: 485 KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544
           KTMSTGLFL+TLSLGFF SS LVS+VK  TGS    GW+ +NIN GRLDCFYGLLA LSF
Sbjct: 480 KTMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSF 539

Query: 545 INFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
           INF +FL+CA WYK +K     +ME +  GS  EEK
Sbjct: 540 INFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEK 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566995|ref|XP_002524480.1| oligopeptide transporter, putative [Ricinus communis] gi|223536268|gb|EEF37920.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/583 (74%), Positives = 489/583 (83%), Gaps = 6/583 (1%)

Query: 1   MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM 60
           M   +SW VADAVDYKGFPADRSKTGGW+PAAL LGIE+CERLSTMGI VNLVTYL GTM
Sbjct: 1   MDGKMSWAVADAVDYKGFPADRSKTGGWLPAALVLGIEVCERLSTMGIGVNLVTYLIGTM 60

Query: 61  HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120
           HLPSATSAN+VTDFMGTSFLLCLLGGFLADSFLGRY+TIAIFA VQT GTG+LA  TK P
Sbjct: 61  HLPSATSANVVTDFMGTSFLLCLLGGFLADSFLGRYKTIAIFALVQTLGTGMLAAITKIP 120

Query: 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180
           QLRPPPC   +   C  A+G QMG+LY++LYLIALGTGGLKSSVSGFGTDQFDEKDEKEK
Sbjct: 121 QLRPPPCNTNN--SCVQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 178

Query: 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYR 240
           +QM YFF RFFF IS GTLMAVTVLVY+QDEVGRSWGYGICS+ MF AILIFLSGT+RYR
Sbjct: 179 SQMNYFFHRFFFFISIGTLMAVTVLVYVQDEVGRSWGYGICSVSMFVAILIFLSGTKRYR 238

Query: 241 YKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVT 300
           YKK SGSPIVHI QV+ AA KKR ++LP + + LYE+  E +RIQHT QF  LDKA++V 
Sbjct: 239 YKKSSGSPIVHIFQVIAAAVKKRHMDLPYNVSLLYENTLEAARIQHTDQFHFLDKAAIVA 298

Query: 301 NTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTM 360
             D++ +G    NPW LCPVTRVEEVKM++ +LPIWATTILFW+TYAQMITFSVEQA+TM
Sbjct: 299 EGDFA-NGGTTPNPWKLCPVTRVEEVKMMVSMLPIWATTILFWTTYAQMITFSVEQASTM 357

Query: 361 QRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSA 420
           +RSIG+F+IPA SLTVFFVAAILI+L AYDR+I+PL K  KGKPGF+NLQ I+IGL LS 
Sbjct: 358 ERSIGSFQIPAGSLTVFFVAAILISLAAYDRIIMPLWKTWKGKPGFTNLQRISIGLVLST 417

Query: 421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS 480
           LGMA+A++VE KRL+VAKA G    TLPISVF LIPQFFLVG+GE F+YTGQLDFFITQS
Sbjct: 418 LGMAAAALVERKRLSVAKAVGGDTLTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITQS 477

Query: 481 PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSN-GKHGWVGENINKGRLDCFYGLL 539
           PKGMKTMSTGLFLTTLSLGFF SS LV +VK  TGSN G  GW+ +NIN GRLDCFYGLL
Sbjct: 478 PKGMKTMSTGLFLTTLSLGFFVSSFLVMVVKRVTGSNGGGQGWLADNINYGRLDCFYGLL 537

Query: 540 AALSFINFGLFLLCASWYK-RKKAKQVP-EMEIIVKGSSVEEK 580
           A L  +NF ++L+CA WYK R  AK    +ME +  GS  EEK
Sbjct: 538 AVLGVVNFVVYLICALWYKPRNSAKSAALQMENVGNGSLAEEK 580

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563024|ref|XP_003549766.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/581 (71%), Positives = 478/581 (82%), Gaps = 6/581 (1%)

Query: 5   VSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPS 64
           +SWTVADAVDYKGFPADRSKTGGWVPAAL LGIEI ERLSTMGIAVNLVTY+   MHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPS 60

Query: 65  ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP 124
           +T+AN VTDFMGTSFLLCLLGGFLADSFLGRY+TI IFA++QT GT  LAISTK P LRP
Sbjct: 61  STAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRP 120

Query: 125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 184
           PPC A     C+ A+G QMG+LY+SLYLIALGTGGLKSSVSGFG+DQFDEKDEKEK+QMA
Sbjct: 121 PPCHANS-DSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMA 179

Query: 185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKC 244
           YFF+RFFF IS GTL AVTVLVY+QDEV RS  YGICS+ M  AI++FLSGT+RYRYK+ 
Sbjct: 180 YFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRS 239

Query: 245 SGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDY 304
            GSPIVHI QV+ A+ KKRK++LP +  SLYED PE SRI+HT QFR L+KA++V   D+
Sbjct: 240 LGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDF 299

Query: 305 SED-GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRS 363
             +      NPW LC +TRVEEVKM++RLLP+WATTI+FW+ YAQ+ITFSVEQA+TM+R+
Sbjct: 300 ETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERN 359

Query: 364 IGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM 423
           IG+F+IPA S+TVFFVAAILITL  YDRLI+PL KK  GKPGF++LQ IAIGL  S  GM
Sbjct: 360 IGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGM 419

Query: 424 ASASVVEVKRLAVAKA---NGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS 480
           A+ASV E KRL+VAK+        TTLPISVF LIPQFFLVGSGE F+YTGQLDFFIT+S
Sbjct: 420 AAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRS 479

Query: 481 PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLA 540
           PKGMKTMSTGLFLTTLSLGFFFSS LVS+VK  TG+    GW+ ++INKGRLD FY LL 
Sbjct: 480 PKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLT 539

Query: 541 ALSFINFGLFLLCASWYKRKKAKQVPEMEI-IVKGSSVEEK 580
            LSF+NF  F +CA W+K KK KQ   M++  V GS+ EEK
Sbjct: 540 ILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGPVNGSTAEEK 580

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548591|ref|XP_003542684.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/573 (72%), Positives = 473/573 (82%), Gaps = 5/573 (0%)

Query: 1   MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM 60
           M E +SWTVADAV+YKGFPADRSKTGGWVPAAL LGIEI ERLSTMGIAVNLVTY+   M
Sbjct: 1   MEEKMSWTVADAVNYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIM 60

Query: 61  HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120
           HLPS+T+AN VTDFMGTSFLLCLLGGFLADSFLGRY+TI IFA++QT GT  LAISTK P
Sbjct: 61  HLPSSTAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLP 120

Query: 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180
            LRPPPC A     C+ A+G QMG+LY+SLYLIALGTGGLKSSVSGFG+DQFDEKDEKEK
Sbjct: 121 GLRPPPCHANS-DSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEK 179

Query: 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYR 240
           +QMAYFF+RFFF IS GTL AVTVLVY+QDEV RS  YGICS+ M  AI++FLSGT+RYR
Sbjct: 180 SQMAYFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYR 239

Query: 241 YKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVT 300
           YK+  GSPIVHI QV+ A+ KKRK +LP +  SLYED PE SRI+HT QFR L+KA++V 
Sbjct: 240 YKRSLGSPIVHIFQVIAASIKKRKRQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVA 299

Query: 301 NTDYSED-GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATT 359
             D+  +     SNPW LC +TRVEEVKM++RLLP+WATTI+FW+ YAQMITFSVEQA+T
Sbjct: 300 EGDFETNVCGSESNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQMITFSVEQAST 359

Query: 360 MQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLS 419
           M+R+IG+F+IPA SLTVFFVAAILITL  YDRLI+PL KK  GKPGF++LQ IAIGL  S
Sbjct: 360 MERNIGSFQIPAGSLTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFS 419

Query: 420 ALGMASASVVEVKRLAVAK--ANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFI 477
             GMA+ASV E KRL+ AK  + G   TTLPISVF LIPQFFLVGSGE F+YTGQLDFFI
Sbjct: 420 IFGMAAASVCERKRLSAAKSVSGGNQATTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFI 479

Query: 478 TQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYG 537
           T+SPKGMKTMSTGLFLTTLSLGFF SS LVS+VK  TG+    GW+ +NINKGRLD FY 
Sbjct: 480 TRSPKGMKTMSTGLFLTTLSLGFFISSFLVSVVKKVTGTRDGQGWLADNINKGRLDLFYA 539

Query: 538 LLAALSFINFGLFLLCASWYKRKKAKQVPEMEI 570
           LL  LSFINF  F +CA W+K KK KQ P M++
Sbjct: 540 LLTILSFINFVAFAVCALWFKPKKPKQ-PAMQM 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478055|ref|XP_003609313.1| Nitrate transporter [Medicago truncatula] gi|355510368|gb|AES91510.1| Nitrate transporter [Medicago truncatula]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/582 (73%), Positives = 484/582 (83%), Gaps = 8/582 (1%)

Query: 1   MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM 60
           M + +SWTV DAVDYKGFPADRSKTGGWVPAAL LGIEI ERLSTMGIAVNLVTYL G M
Sbjct: 1   MEKKMSWTVGDAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYLMGVM 60

Query: 61  HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120
           H+PS+T+AN VTDFMGTSFLLCLLGGFLADSFLGRY+TI IF+ +QT GT  LAISTK P
Sbjct: 61  HMPSSTAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFSAIQTLGTAALAISTKLP 120

Query: 121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180
            LRPPPC A +   C+ A+GIQMGVLY++LYLIALGTGGLKSS+SGFG+DQFDEKDEKEK
Sbjct: 121 SLRPPPCHAGE--SCKPANGIQMGVLYLALYLIALGTGGLKSSISGFGSDQFDEKDEKEK 178

Query: 181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYR 240
           +QM +FF+RFFF IS GTL AVT+LVYIQDE+ RSW YGICSI M  AILIFLSGT RYR
Sbjct: 179 SQMTFFFNRFFFFISLGTLAAVTILVYIQDEISRSWAYGICSISMVIAILIFLSGTTRYR 238

Query: 241 YKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVT 300
           YKK  GSPIVHI QV+VA+ KKRK+ELP +  SLYED PE+SRI+ + QFR L+KA++V 
Sbjct: 239 YKKSLGSPIVHIFQVIVASIKKRKMELPYNVGSLYEDTPEDSRIEQSEQFRFLEKAAIVV 298

Query: 301 NTDYSED--GAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQAT 358
             D+ +D  G+   NPW LC +TRVEEVKM++RLLPIWATTI+FW+TYAQMITFSVEQA 
Sbjct: 299 EGDFDKDLYGSG-PNPWKLCSLTRVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQAA 357

Query: 359 TMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL 418
           TM+R++GNF+IPA SLTVFFV AIL+TL   DR+I+PL KK  GKPGFSNLQ IAIGL L
Sbjct: 358 TMERNVGNFQIPAGSLTVFFVVAILLTLAVNDRIIMPLWKKLNGKPGFSNLQRIAIGLLL 417

Query: 419 SALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFIT 478
           S +GMA+AS++EVKRL+VAK      TTLPISVF L+PQFFLVGSGE F+YTGQLDFFIT
Sbjct: 418 STIGMAAASLIEVKRLSVAKGVKGNQTTLPISVFLLVPQFFLVGSGEAFIYTGQLDFFIT 477

Query: 479 QSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGL 538
           QSPKGMKTMSTGLFLTTLSLGFF SS LVS+VK  TG+    GW+ ++INKGRLD FY L
Sbjct: 478 QSPKGMKTMSTGLFLTTLSLGFFVSSFLVSVVKKVTGTRDGQGWLADHINKGRLDLFYAL 537

Query: 539 LAALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
           L  LSFINF  FL+CA WYK KK K  P M+ I   SSVEEK
Sbjct: 538 LTILSFINFVAFLVCAFWYKPKKPK--PSMQ-INGSSSVEEK 576

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466528|ref|XP_004150978.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus] gi|449522758|ref|XP_004168393.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/581 (72%), Positives = 485/581 (83%), Gaps = 6/581 (1%)

Query: 2   GEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH 61
           G+ +SWTVADAVDYKGFPAD+SKTGGW+PAAL LGIEICERLSTMGIAVNLVTYLGG MH
Sbjct: 22  GKKLSWTVADAVDYKGFPADKSKTGGWIPAALILGIEICERLSTMGIAVNLVTYLGGVMH 81

Query: 62  LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQ 121
           LPSA SANIVTDFMGT FLLCLLGGFLADSFLGRY TI I A +QT GT  LA+STK PQ
Sbjct: 82  LPSAASANIVTDFMGTCFLLCLLGGFLADSFLGRYYTILISALIQTLGTAALAVSTKLPQ 141

Query: 122 LRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT 181
           LRPPPC  T    C+ A+G QMG+LY++LYLIALGTGGLKSS+SGFGTDQFD+ DEKEK 
Sbjct: 142 LRPPPCDGTK--TCKEANGFQMGILYLALYLIALGTGGLKSSISGFGTDQFDDTDEKEKA 199

Query: 182 QMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRY 241
           +MAYFF+RFFF ISTGTLMAVTVLVYIQDEVGRSW YGICS+ M  AIL+FLSGT+RYRY
Sbjct: 200 KMAYFFNRFFFFISTGTLMAVTVLVYIQDEVGRSWAYGICSVSMLGAILLFLSGTKRYRY 259

Query: 242 KKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEE-SRIQHTYQFRCLDKASVVT 300
           KK  GSP+VHI QV+ AA KKRK+ELP +   LYED P++ SRI+HT QF+ LDKA++V 
Sbjct: 260 KKSMGSPVVHILQVIAAAIKKRKLELPQNVGLLYEDSPDQASRIEHTKQFQFLDKAAIVA 319

Query: 301 NTDYSEDGAFVS-NPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATT 359
             D+ + GA  + NPW L  VTRVEEVKM+ RLLPIWATTI+FW+TYAQMITFSV+QA+T
Sbjct: 320 EGDFEKHGAVSALNPWKLSSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVQQAST 379

Query: 360 MQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLS 419
           M+RSIG+F+IPA SLTVFFVAAILITLG YDRLI+PL KK KGK GF+N+Q +AIGL LS
Sbjct: 380 MERSIGSFQIPAGSLTVFFVAAILITLGVYDRLIMPLWKKWKGKQGFTNIQRMAIGLVLS 439

Query: 420 ALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQ 479
            LGMA+A++ E KRL VAKA G   TTLPISVF LIPQFFLVG+GE F+YTGQLDFFIT+
Sbjct: 440 ILGMAAAALAESKRLGVAKAVGGDTTTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITK 499

Query: 480 SPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLL 539
           SPKGMKTMSTGLFL+TLSLGFF SS LVS+VK  TG++G+ GW+ +N+N GRLDCFYGLL
Sbjct: 500 SPKGMKTMSTGLFLSTLSLGFFISSFLVSVVKRVTGNDGE-GWLADNVNYGRLDCFYGLL 558

Query: 540 AALSFINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEK 580
             LS INF  FL+C  WY  +K K   +   IV G+  EEK
Sbjct: 559 TILSIINFVAFLVCVIWYMPQKRKDF-QKNGIVNGNLAEEK 598

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.979	0.986	0.657	6.1e-197
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.955	0.940	0.514	7.9e-149
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.955	0.940	0.445	1.7e-123
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.956	0.975	0.409	3.3e-111
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.943	0.961	0.406	7.8e-110
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.939	0.933	0.405	6.3e-108
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.943	0.928	0.385	5.3e-104
TAIR|locus:2196739	585	NRT1:2 "AT1G69850" [Arabidopsi	0.406	0.403	0.426	9.9e-95
TAIR|locus:2205769	567	AT1G27040 [Arabidopsis thalian	0.938	0.961	0.373	2.3e-94
TAIR|locus:2119058	589	NRT1.8 "NITRATE TRANSPORTER 1.	0.948	0.935	0.368	2.3e-94

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
 Identities = 379/576 (65%), Positives = 442/576 (76%)

Query:     6 SWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSA 65
             SWTVADAVDYKG PAD+SKTGGW+ AAL LGIE+ ERLSTMGIAVNLVTYL  TMHLPS+
Sbjct:     6 SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query:    66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPP 125
             TSANIVTDFMGTSFLLCLLGGFLADSFLGR++TI IF+T+Q  GTG LA++TK P+LRPP
Sbjct:    66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query:   126 PCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 185
              C   +   C  A+  QM +LY+SLYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct:   126 TCHHGEA--CIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query:   186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCS 245
             FF+RFFF IS GTL+AVTVLVY+QDEVGRSW YGIC++ M  AI+IFL GT+RYRYKK  
Sbjct:   184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query:   246 GSPIVHICQXXXXXXXXXXXELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYS 305
             GSP+V I Q           ELP S   LYED PE  RI+HT QF  LDKA++V   D+ 
Sbjct:   244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query:   306 E--DGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRS 363
             +  DG  + NPW L  VT+VEEVKM++RLLPIWATTI+FW+TYAQMITFSVEQA+TM+R+
Sbjct:   304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query:   364 IGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM 423
             IG+FKIPA SLTVFFVAAILITL  YDR I+P  KK KGKPGFS+LQ IAIGL LS  GM
Sbjct:   364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query:   424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG 483
             A+A++VE KRL+VAK++     TLPISVF L+PQFFLVG+GE F+YTGQLDFFITQSPKG
Sbjct:   424 AAAALVEQKRLSVAKSSSQK--TLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query:   484 MKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALS 543
             MKTM                   VSIVK  T ++   GW+ +NIN GRLD FY LL  LS
Sbjct:   482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query:   544 FINFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEE 579
              INF ++++CA W+K  K K   E E   KG SVE+
Sbjct:   542 GINFVVYIICALWFKPTKGKDSVEKEN-GKGFSVED 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 293/570 (51%), Positives = 386/570 (67%)

Query:    11 DAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI 70
             DA D++G PADRSKTGGW  AA+ L IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct:    14 DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query:    71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130
             VT+F+GTSF+LCLLGGF+AD+FLGRY TIAIFA +Q  G  +L +ST  P LRPP C  T
Sbjct:    74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query:   131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 190
               + C+ ASGIQ+ VLY++LYL ALGTGG+K+SVSGFG+DQFDE + KE+++M YFF+RF
Sbjct:   134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query:   191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIV 250
             FF I+ G+L+AVTVLVY+QD+VGR WGYGIC+  +  A+ +FL+GT RYR+KK  GSP+ 
Sbjct:   194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query:   251 HICQXXXXXXXXXXXELPSSTASLYE--DY--PEES-----RIQHTYQFRCLDKASVVTN 301
              +             ELP+  + LY+  D    E S     ++ HT QFR LDKA++   
Sbjct:   254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAIRDQ 313

Query:   302 TDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQ 361
                     F  N WTL  +T VEEVK ++R+LPIWAT ILFW+ +AQ+ T SV Q+ T+ 
Sbjct:   314 EAGVTSNVF--NKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETLD 371

Query:   362 RSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSA 420
             RSIG+F+IP AS+ VF+V  +L+T   YDR+ I L KK    P G   LQ I +GLF  +
Sbjct:   372 RSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGS 431

Query:   421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS 480
             + MA A++VE+KRL  A A+G T  TLP+  + LIPQ+ +VG GE  +YTGQLDFF+ + 
Sbjct:   432 MAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLREC 491

Query:   481 PKGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLA 540
             PKGMK M                   V+IV+  TG    H W+ +++NKGRL  FY L+A
Sbjct:   492 PKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGK--AHPWIADDLNKGRLYNFYWLVA 549

Query:   541 ALSFINFGLFLLCASWYKRKKAKQVPEMEI 570
              L  +NF +FL+ + WY  K+ K++ E+ I
Sbjct:   550 VLVALNFLIFLVFSKWYVYKE-KRLAEVGI 578

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
 Identities = 257/577 (44%), Positives = 355/577 (61%)

Query:    11 DAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI 70
             +A DY+G P D+SKTGGW+ A L LG E+ ER+  MGI++NLVTYL G +H+ SA SA I
Sbjct:    16 EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query:    71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT 130
             VT+FMGT  LL LLGGFLAD+ LGRY+ +AI A+V   G  LL ++T    +RPP C   
Sbjct:    76 VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICD-- 133

Query:   131 DITKCQH----ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186
             D  +  H    A+G Q+ +LY++LY IALG GG+KS+VSGFG+DQFD  D KE+ QM +F
Sbjct:   134 DFRRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFF 193

Query:   187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG 246
             F+RF+F IS G+L AV  LVY+QD VGR WGYGI +  M  A ++ L GT+RYR+KK  G
Sbjct:   194 FNRFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKG 253

Query:   247 SPIVHICQXXXXXXXXXXXELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSE 306
             SP   I +             P+   SL   Y + + + HT   +CLDKA++  N     
Sbjct:   254 SPFTTIWRVGFLAWKKRKESYPAHP-SLLNGY-DNTTVPHTEMLKCLDKAAISKNESSPS 311

Query:   307 DGAFVS-NPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG 365
                F   +PW +  VT+VEEVK+V++L+PIWAT ILFW+ Y+QM TF+VEQAT M R +G
Sbjct:   312 SKDFEEKDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDRKLG 371

Query:   366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGLFLSALGMA 424
             +F +PA S + F +  IL+     +R+ +PL ++   KP G ++LQ I +GL  S   MA
Sbjct:   372 SFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMAAMA 431

Query:   425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM 484
              A+V+E  R   A  N        IS F+L+PQ+FLVG+GE F Y GQL+FFI ++P+ M
Sbjct:   432 VAAVIENARREAAVNNDKK-----ISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAPERM 486

Query:   485 KTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF 544
             K+M                   VS+V   T  +    W+  N+NK RL+ FY LL  L  
Sbjct:   487 KSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKS----WLRSNLNKARLNYFYWLLVVLGA 542

Query:   545 INFGLFLLCASWYKRKKAKQVPEMEIIVKGSSVEEKL 581
             +NF +F++ A  ++ K A  +    ++    SVE+++
Sbjct:   543 LNFLIFIVFAMKHQYK-ADVITV--VVTDDDSVEKEV 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 234/571 (40%), Positives = 334/571 (58%)

Query:     1 MGEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM 60
             M E   +T    VD    PA++ KTG W      LG E CERL+  G+  NLV YL   +
Sbjct:     1 MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query:    61 HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP 120
             +  +AT+AN VT++ GT ++  L+G F+AD++LGRY TIA F  +   G  LL +S   P
Sbjct:    61 NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query:   121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK 180
              L+P  C A     C H +  Q  V +++LY+IALGTGG+K  VS FG DQFDE DE EK
Sbjct:   121 GLKPGNCNADT---C-HPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYR 240
              + + FF+ F+F I+ G L+A TVLV+IQ  VG  WG+G+ ++ M  A+  F  G+R YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   241 YKKCSGSPIVHICQXXXXXXXXXXXELPSSTASLYEDYPEESRIQ------HTYQFRCLD 294
              ++  GSP+  I Q           ++P   + L+E   +ES I+      HT   +  D
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFD 296

Query:   295 KASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSV 354
             KA+V + +D  +DG    NPW LC VT+VEE+K +I LLP+WAT I+F + Y+QM T  V
Sbjct:   297 KAAVESQSDSIKDGEV--NPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFV 354

Query:   355 EQATTMQRSIG-NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKK-RKGKPGFSNLQLI 412
              Q  TM + +G NF+IP+ASL++F   ++L     YD+ IIPL +K  + + GF+ LQ +
Sbjct:   355 LQGNTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRM 414

Query:   413 AIGLFLSALGMASASVVEVKRLAVAKA-NGTTGTTLPISVFYLIPQFFLVGSGEGFMYTG 471
              IGL +S   M +A V+EV RL   K  N      + +S+F+ IPQ+ L+G  E F + G
Sbjct:   415 GIGLVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIG 474

Query:   472 QLDFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGR 531
             QL+FF  Q+P  M+++                   V++V   T  NGK GW+ +N+N+G 
Sbjct:   475 QLEFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGH 534

Query:   532 LDCFYGLLAALSFINFGLFLLCASWYKRKKA 562
             LD F+ LLA LSF+NF ++L  +  YK KKA
Sbjct:   535 LDYFFYLLATLSFLNFLVYLWISKRYKYKKA 565

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 229/564 (40%), Positives = 333/564 (59%)

Query:     7 WTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT 66
             +T    +D    PA+++KTG W      LG E CERL+  G++ NL+ YL   M++ + +
Sbjct:     8 YTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVS 67

Query:    67 SANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP 126
             ++  V+++ GT +   L+G F+AD++LGRY TIA F  +   G  LL IS   P L P  
Sbjct:    68 ASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT- 126

Query:   127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 186
             C       C HA+  Q  + +I+LYLIALGTGG+K  VS FG DQFD+ DEKEK   + F
Sbjct:   127 CSGET---C-HATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSF 182

Query:   187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG 246
             F+ F+FVI+ G ++A +VLV+IQ  VG  WG G+ ++ M  A++ F +G+  YR +K  G
Sbjct:   183 FNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGG 242

Query:   247 SPIVHICQXXXXXXXXXXXELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVT 300
             SP+  + Q           ++P   + LYE+   ES      +++HT      DKA+V T
Sbjct:   243 SPLTRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query:   301 NTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTM 360
              +D    GA  S+ W LC VT+VEE+K +IRLLPIWAT I+F S Y+QM T  V Q  T+
Sbjct:   303 ESD--NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTL 360

Query:   361 QRSIG-NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG-KPGFSNLQLIAIGLFL 418
              + +G NFKIP+ASL++F   ++L     YD+LI+P  +K  G + GF+ LQ I IGL +
Sbjct:   361 DQHMGPNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVI 420

Query:   419 SALGMASASVVEVKRLAVAKANGTTGT-TLPISVFYLIPQFFLVGSGEGFMYTGQLDFFI 477
             S   M SA ++EV RL   + +      T+P+++F+ +PQ+FLVG  E F + GQL+FF 
Sbjct:   421 SIFSMVSAGILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFY 480

Query:   478 TQSPKGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYG 537
              Q+P  M+++                   V++V   T S G+ GW+ +N+N G LD F+ 
Sbjct:   481 DQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFW 540

Query:   538 LLAALSFINFGLFLLCASWYKRKK 561
             LLA LSF+NF ++L  A WY  KK
Sbjct:   541 LLAGLSFLNFLVYLWIAKWYTYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 227/560 (40%), Positives = 332/560 (59%)

Query:    12 AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV 71
             +VD+ G P  + KTG W      LG E CERL+  GIA NL+TYL   +H  + ++A  V
Sbjct:    29 SVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:    72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131
             T + GT +L  L+G  LAD++ GRY TIA F+ +   G   L +S   P L+P  C   D
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIG-D 147

Query:   132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191
                C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A FF+ F+
Sbjct:   148 F--CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFY 205

Query:   192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVH 251
             F I+ G L++ ++LV+IQ+  G   G+GI ++ M  AI  F  GT  YR++K  GSPI  
Sbjct:   206 FSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITR 265

Query:   252 ICQXXXXXXXXXXXELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVTNTDYS 305
             I Q           ++P     LYE   + S      +I+HT   + LDKA+V++  + S
Sbjct:   266 ISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEE-S 324

Query:   306 EDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIG 365
             + G + SN W LC VT+VEE+K++IR+ PIWA+ I+F + YAQM T  V+Q   M   IG
Sbjct:   325 KSGDY-SNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKIG 383

Query:   366 NFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG-KPGFSNLQLIAIGLFLSALGMA 424
             +F++P A+L  F  A+++I +  YDR I+PL +K  G   GF+ +Q + IGLF+S L MA
Sbjct:   384 SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMA 443

Query:   425 SASVVEVKRLAVAKANGT--TGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK 482
             +A++VE+ RL +A   G   +G  +PISV + IPQ+F++G+ E F + GQL+FF  QSP 
Sbjct:   444 AAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPD 503

Query:   483 GMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAAL 542
              M+++                   +++V   T  NG+ GW+ +N+N G LD F+ LLA L
Sbjct:   504 AMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGL 563

Query:   543 SFINFGLFLLCASWYKRKKA 562
             S +N  ++   A+ YK+KKA
Sbjct:   564 SLVNMAVYFFSAARYKQKKA 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 218/565 (38%), Positives = 330/565 (58%)

Query:     5 VSWTVAD-AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP 63
             +S T  D ++D  G P  + KTG W      LG E CERL+  GIA NL+TY    +H  
Sbjct:    32 LSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHES 91

Query:    64 SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR 123
             + ++A+ V  + GT ++  L+G  +ADS+ GRY TIA F+ +   G  LL +S   P L+
Sbjct:    92 NVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLK 151

Query:   124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 183
             P  C       C  A+ +Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + 
Sbjct:   152 PAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRK 211

Query:   184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKK 243
             A FF+ F+F I+ G+ ++ T+LV++Q+ VG   G+ I ++ M  +I  F  GT  YR++K
Sbjct:   212 ASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQK 271

Query:   244 CSGSPIVHICQXXXXXXXXXXXELPSSTASLYEDYPEES------RIQHTYQFRCLDKAS 297
               GSPI  +CQ            LP   + LYE   + S      +IQHT  ++ LDKA+
Sbjct:   272 PGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAA 331

Query:   298 VVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQA 357
             V++  + S+ GAF SNPW LC VT+VEEVK +IR+ PIWA+ I++   Y+Q+ T  V+Q 
Sbjct:   332 VISEYE-SKSGAF-SNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQG 389

Query:   358 TTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GFSNLQLIAIGL 416
              +M R I +F+IP AS  VF    +LI++  YDR ++P +++  G P G ++LQ + IGL
Sbjct:   390 RSMNRIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGL 449

Query:   417 FLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFF 476
             FLS L +A+A++VE  RL +A+        + +S+F+ IPQ+ L+G  E F + G+++FF
Sbjct:   450 FLSVLSIAAAAIVETVRLQLAQ------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFF 503

Query:   477 ITQSPKGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFY 536
               +SP  M+++                   +++V   T   GK GWV +++NKG LD F+
Sbjct:   504 YDESPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFF 563

Query:   537 GLLAALSFINFGLF-LLCASWYKRK 560
              LL +L  +N  ++ L+C    K+K
Sbjct:   564 WLLVSLGLVNIPVYALICVKHTKKK 588

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2196739 NRT1:2 "AT1G69850" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
 Identities = 102/239 (42%), Positives = 151/239 (63%)

Query:    14 DYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTD 73
             D++   A + + GG + A+  L +EI E L+ +  A NLV YL   MH+  + SAN VT+
Sbjct:    15 DWRNRAAVKGRHGGMLAASFVLVVEILENLAYLANASNLVLYLREYMHMSPSKSANDVTN 74

Query:    74 FMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT 133
             FMGT+FLL LLGGFL+D+F   ++   I A+++  G  +L I  + P L PP C   D  
Sbjct:    75 FMGTAFLLALLGGFLSDAFFSTFQIFLISASIEFLGLIILTIQARTPSLMPPSC---DSP 131

Query:   134 KCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV 193
              C+  SG +  +L++ LYL+ALG GG+K S++  G +QFDE   K + Q + FF+ F F 
Sbjct:   132 TCEEVSGSKAAMLFVGLYLVALGVGGIKGSLASHGAEQFDESTPKGRKQRSTFFNYFVFC 191

Query:   194 ISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHI 252
             ++ G L+AVT +V+++D  G  WG+G+ +I +F +ILIFLSG+R YR K   GSP+  I
Sbjct:   192 LACGALVAVTFVVWLEDNKGWEWGFGVSTIAIFVSILIFLSGSRFYRNKIPCGSPLTTI 250

GO:0005215 "transporter activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009624 "response to nematode" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

GO:0090440 "abscisic acid transporter activity" evidence=IDA

TAIR|locus:2205769 AT1G27040 [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 211/565 (37%), Positives = 316/565 (55%)

Query:     2 GEMVSWTVADAVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH 61
             G++  W      D++   A R + GG + A+  L +EI E L+ +  A NLV YL   MH
Sbjct:     7 GDVSKWE--GYADWRNKAALRGRHGGMLAASFVLAVEILENLAFLANASNLVLYLKNFMH 64

Query:    62 LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQ 121
             +  A S++ VT FM T+FLL LLGGFLAD+F   +    I A+++  G  LL I  ++P 
Sbjct:    65 MSLARSSSEVTTFMATAFLLALLGGFLADAFFSTFVIFLISASIEFLGLILLTIQARRPS 124

Query:   122 LRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT 181
             L PPPC+++   +C+   G +   L++ LYL++LG GG+K S+   G +QFDE   K + 
Sbjct:   125 LMPPPCKSSAALRCEVVGGSKAAFLFVGLYLVSLGIGGIKGSLPSHGAEQFDEGTPKGRK 184

Query:   182 QMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRY 241
             Q + FF+ + F +S G L+AVT +V+I+D  G  WG+G+ +I +F +IL+FL G+R Y+ 
Sbjct:   185 QRSTFFNYYVFCLSCGALVAVTFVVWIEDNKGWEWGFGVSTISIFLSILVFLLGSRFYKN 244

Query:   242 KKCSGSPIVHICQXXXXXXXXXXXELPSS----TASLYEDYPEESRIQH-TYQFRCLDKA 296
             K   GSP+  I +              SS    +  +  ++ E++  Q  T    CL+KA
Sbjct:   245 KIPRGSPLTTIFKVLLAASIVSCSSKTSSNHFTSREVQSEHEEKTPSQSLTNSLTCLNKA 304

Query:   297 SVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQ 356
              +   T +          W  C V +VE+VK+V+++LPI+  TI+     AQ+ T+SV Q
Sbjct:   305 -IEGKTHHI---------WLECTVQQVEDVKIVLKMLPIFGCTIMLNCCLAQLSTYSVHQ 354

Query:   357 ATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKK-RKGKPGFSNLQLIAIG 415
             A TM R I NF +P+ASL VF V  +LI    YD LIIP  +K  K + G ++LQ I +G
Sbjct:   355 AATMNRKIVNFNVPSASLPVFPVVFMLILAPTYDHLIIPFARKVTKSEIGITHLQRIGVG 414

Query:   416 LFLSALGMASASVVEVKRLAVAKANGTTGT--TLPISVFYLIPQFFLVGSGEGFMYTGQL 473
             L LS + MA A++VE+KR  VA+  G   +  TLPI+  ++  Q+  +GS + F   G L
Sbjct:   415 LVLSIVAMAVAALVELKRKQVAREAGLLDSEETLPITFLWIALQYLFLGSADLFTLAGLL 474

Query:   474 DFFITQSPKGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLD 533
             +FF T++P  M+++                   V IV   T S G+  W+GE +N+ RLD
Sbjct:   475 EFFFTEAPSSMRSLATSLSWASLALGYYLSSVMVPIVNRVTKSAGQSPWLGEKLNRNRLD 534

Query:   534 CFYGLLAALSFINFGLFLLCASWYK 558
              FY L+  LS +NF  +L  A  YK
Sbjct:   535 LFYWLMCVLSVVNFLHYLFWAKRYK 559

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2119058 NRT1.8 "NITRATE TRANSPORTER 1.8" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 207/562 (36%), Positives = 315/562 (56%)

Query:    12 AVDYKGFPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV 71
             +VD  G PA R+ TG W+ A L L  +    L+  G+ VNLV +L   M   +A +AN V
Sbjct:    16 SVDRHGNPAIRANTGKWLTAILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNAEAANNV 75

Query:    72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD 131
             + + GT ++  LLG FL+DS+ GRY+T AIF      G  +L++ST    L P  C   D
Sbjct:    76 SKWTGTVYIFSLLGAFLSDSYWGRYKTCAIFQASFVAGLMMLSLSTGALLLEPSGCGVED 135

Query:   132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 191
              + C+  S  +  + Y+S+YLIALG GG + +++ FG DQFD +D  E      FFS F+
Sbjct:   136 -SPCKPHSTFKTVLFYLSVYLIALGYGGYQPNIATFGADQFDAEDSVEGHSKIAFFSYFY 194

Query:   192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVH 251
               ++ G+L + TVL Y +D+     G+   +   F  +++FL GT +YR+     SP   
Sbjct:   195 LALNLGSLFSNTVLGYFEDQGEWPLGFWASAGSAFAGLVLFLIGTPKYRHFTPRESPWSR 254

Query:   252 ICQXXXXXXXXXXXELPSSTASLYED---YPEESRIQHTYQFRCLDKASVVTNTDYSE-- 306
              CQ           ++     +LY+    Y  + +I HT  FR LD+A++VT  D +E  
Sbjct:   255 FCQVLVAATRKAKIDVHHEELNLYDSETQYTGDKKILHTKGFRFLDRAAIVTPDDEAEKV 314

Query:   307 DGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN 366
             +     +PW LC VT+VEEVK V+RLLPIW  TIL+   + QM +  V Q   M+ +I N
Sbjct:   315 ESGSKYDPWRLCSVTQVEEVKCVLRLLPIWLCTILYSVVFTQMASLFVVQGAAMKTNIKN 374

Query:   367 FKIPAASLTVFFVAAILITLGAYDRLIIPL---LKKRKGKPGFSNLQLIAIGLFLSALGM 423
             F+IPA+S++ F + ++   + AY R + PL   L K +   G + LQ + IGL ++ + M
Sbjct:   375 FRIPASSMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTELQRMGIGLVIAIMAM 434

Query:   424 ASASVVEVKRLAVAKANGTTG--TTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP 481
              SA +VE+ RL   +    T   ++  +S+F+ +PQ+ L+G+ E FMY GQL+FF +Q+P
Sbjct:   435 ISAGIVEIHRLKNKEPESATSISSSSTLSIFWQVPQYMLIGASEVFMYVGQLEFFNSQAP 494

Query:   482 KGMKTMXXXXXXXXXXXXXXXXXXXVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAA 541
              G+K+                    VSIV   + ++  HGW+ EN+NKG L+ FY LLA 
Sbjct:   495 TGLKSFASALCMASISLGNYVSSLLVSIVMKISTTDDVHGWIPENLNKGHLERFYFLLAG 554

Query:   542 LSFINFGLFLLCASWYKRKKAK 563
             L+  +F ++L+CA WYK  K++
Sbjct:   555 LTAADFVVYLICAKWYKYIKSE 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZY4	PTR27_ARATH	No assigned EC number	0.6979	0.9793	0.9861	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016880001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (576 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
pfam00854	372	pfam00854, PTR2, POT family	6e-79
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-25
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-24
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	7e-15
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-08
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-07
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	5e-05
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	1e-04

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  253 bits (648), Expect = 6e-79
 Identities = 131/406 (32%), Positives = 194/406 (47%), Gaps = 41/406 (10%)

Query: 96  YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIAL 155
           ++TI + + +   G  LL +    P L P                +Q+ + YI LYLIAL
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSP----------------VQVALFYIGLYLIAL 44

Query: 156 GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRS 215
           GTGG+K +VS FG DQFDE  +    +   FFS F+F I+ G+L+A  +  Y+Q  VG  
Sbjct: 45  GTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 216 WGYGICSICMFTAILIFLSGTRRYRYKKCSGS--PIVHICQVVVAARKKRKVELPSSTAS 273
            G+G+ ++ M  A+L+FL G+RRY+ K   G     V I  ++ AA K RK++LP  +  
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161

Query: 274 LYEDYPEESRIQHTYQFRCLDKASVVTNTDY-SEDGAFVSNPWTLCPVTRVEEVKMVIRL 332
           LY            Y  R + +  V T               +       V  ++ ++ +
Sbjct: 162 LYW-------ALEKYNKRSISQTKVHTRVAVIFIPLPKFWALF--DQQGSVWLLQAILLM 212

Query: 333 LPIWATTILFWSTYAQMITFSVEQATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDR 391
           LPIWA  IL    + Q+ T  V Q  TM R I   F+IP AS   F   A+LI L   D 
Sbjct: 213 LPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDF 272

Query: 392 LIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTT--GTTLPI 449
           L+ PLL   + K G +  Q   +G+F+  +    A++VE KR   A A G T  G T+P+
Sbjct: 273 LVYPLL---RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPL 329

Query: 450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTT 495
            + + +P+ F+ G G      G L+F     P  M ++ T L    
Sbjct: 330 FILWSLPELFISGVGL----AGALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  109 bits (274), Expect = 5e-25
 Identities = 103/389 (26%), Positives = 171/389 (43%), Gaps = 64/389 (16%)

Query: 52  LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG 111
           LV YL   +     T+ NI   F    +L  L+G  +ADS+LG+++TI   + V   G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGHA 69

Query: 112 LLAISTKQ-PQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTD 170
           L   S    P L  P   A  +               + L LIALGTGG+K  VS FG D
Sbjct: 70  L--ASLGAVPSLGHPLHDALSL---------------VGLALIALGTGGIKPCVSAFGGD 112

Query: 171 QFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGR-------SWGYGICSI 223
           QF+E+    + +   FFS F+F I+ G+L +  +   ++ +VG           +G+  I
Sbjct: 113 QFEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGI 169

Query: 224 CMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESR 283
            M  A+++F  G++ Y+ K   G+ +  + + +V A KKR       T S  ED+P    
Sbjct: 170 LMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR-----FRTRS--EDWPRLHW 222

Query: 284 IQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFW 343
           +                   Y                  +   K ++R+L ++    +FW
Sbjct: 223 LDWAAP-------------KYLIR--------------MIRSTKRLLRVLFLFIPLPMFW 255

Query: 344 STYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGK 403
           + + Q  +    QAT M   +G F I    +       +LI +  +D ++ P L   K  
Sbjct: 256 ALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPAL--AKCG 313

Query: 404 PGFSNLQLIAIGLFLSALGMASASVVEVK 432
             F++L+ +A+G+ L+AL  A A++++ K
Sbjct: 314 TRFTSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  105 bits (263), Expect = 7e-24
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 32/224 (14%)

Query: 22  RSKTGGWVPAALSL--GIEICERLSTMGIAVNLVTYL----GGTMHLPSATSANIVTDFM 75
                   P  L L   +E+ ER S  G+   L+ YL    G  +      +  + + + 
Sbjct: 12  LEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYG 71

Query: 76  GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC 135
              +L  ++GG+LAD  LG  RTI + A +   G  +LAIS                   
Sbjct: 72  SLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS------------------- 112

Query: 136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVIS 195
              S    G LYI L LI +GTG  K ++S    + + + D     +    F+ F+  I+
Sbjct: 113 ---SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGIN 165

Query: 196 TGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRY 239
            G+L+A  +   +    G   G+G+ ++ M   ++IFL G R  
Sbjct: 166 IGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV 209

Length = 498

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 76.8 bits (189), Expect = 7e-15
 Identities = 80/473 (16%), Positives = 160/473 (33%), Gaps = 57/473 (12%)

Query: 37  IEICERLSTMGIAVNLVTYL--GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG 94
           +E+ ER S  G+   L  YL     +      +  I   +    +LL  +G +  D   G
Sbjct: 18  VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG 77

Query: 95  RYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIA 154
             +T+ +   V   G  +LA+S                        I   +++  L  IA
Sbjct: 78  TKKTMVLGGIVLMLGHFMLAMS------------------------IYPDLIFYGLGTIA 113

Query: 155 LGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGR 214
           +G+G  K++ S     +  E+ +  +      F+ F+  I+ G+ ++  +   I +  G 
Sbjct: 114 VGSGLFKANPSSM-VGKLYERGDMPRRDGG--FTLFYMSINIGSFISPLLAGVIAENYGY 170

Query: 215 SWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASL 274
             G+ + ++ M   +L F +G    R       P+            K  + L ++ A +
Sbjct: 171 HVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPL----SGQGKTYGKLLLALLAALALV 226

Query: 275 YEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP 334
                        +    +  A+++  T       F         +  V   KM    + 
Sbjct: 227 ---------FFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKM-YAYIV 276

Query: 335 IWATTILFWSTYAQMIT-FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLI 393
           ++   ++FW  YAQM T  +      M   +    +P        +    + +G+    +
Sbjct: 277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQS--LNPFWVVVGSPVLAM 334

Query: 394 IPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFY 453
           I     RKGK   + L+   +G+        +        +  A A    G         
Sbjct: 335 IWTRLGRKGKDPTTPLKF-TLGMLFCGASFLTF----AASIWFADA----GGLTSPWFMV 385

Query: 454 LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL 506
           LI  +     GE  +    L ++   +P+ +     G++    ++G      L
Sbjct: 386 LI--YLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYL 436

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 27/209 (12%)

Query: 35  LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG 94
           + ++I E  S  G+   L+ YL   +      +  + + +    ++  +LGGFLAD  LG
Sbjct: 15  VALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLG 74

Query: 95  RYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIA 154
               + + A +   G  +L  S   P                         LY+SL +I 
Sbjct: 75  NRMAVMLGALLMAIGHVVLGASEIHPSF-----------------------LYLSLAIIV 111

Query: 155 LGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGR 214
            G G  KS+VS    + ++  D +        FS  +   + G+++A     Y Q+E   
Sbjct: 112 CGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSW 167

Query: 215 SWGYGICSICMFTAILIFLSGTRRYRYKK 243
           + G+G+ ++ M   ++IFL G R + + +
Sbjct: 168 AMGFGLAAVGMIAGLVIFLCGNRHFTHTR 196

Length = 493

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 33/186 (17%), Positives = 68/186 (36%), Gaps = 13/186 (6%)

Query: 324 EEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQ-RSIGNFKIPAASLTVFFVAAI 382
           +E + ++  +P++   ++FW+ Y QM +     A     R I  F++P A         I
Sbjct: 278 DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFI 337

Query: 383 LITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT 442
           ++       L   L +  K        Q      F   L +A    + +    +     +
Sbjct: 338 ILFSPILAALWTKLGRGNK--------QPSTPIKFALGLILAGLGFLILLLAGIWFGGPS 389

Query: 443 TGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF 502
                 +SV++L+  + L   GE F+    L      +P  +K+    ++  T++ G   
Sbjct: 390 G----LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL 445

Query: 503 SSLLVS 508
              +  
Sbjct: 446 GGQVAG 451

Length = 498

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 27/153 (17%)

Query: 81  LCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASG 140
           L  +GG++ D  LG  RTI + A V   G  +  +S  +P L                  
Sbjct: 66  LISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDL------------------ 107

Query: 141 IQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM 200
                ++I+L  IA+G G  K++ +   +  +  KD +    +   F+ F+  I+ G+L+
Sbjct: 108 -----IFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLI 158

Query: 201 AVTVLVYIQDEVGRSWGYGICSICMFTAILIFL 233
           ++++   I D+ G S  Y +C   +  A+L++ 
Sbjct: 159 SLSLAPVIADKFGYSVTYNLCGAGLIIALLVYF 191

Length = 489

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 43/201 (21%), Positives = 83/201 (41%), Gaps = 27/201 (13%)

Query: 33  LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF 92
           L   IE+ ER    G+   +  YL   + +  A S  + + F    + L  +GG+L D  
Sbjct: 25  LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV 84

Query: 93  LGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYL 152
           LG  R I + A V   G  L+A                        SG   G++Y+ +  
Sbjct: 85  LGTKRVIMLGAIVLAIGYALVA-----------------------WSGHDAGIVYMGMAT 121

Query: 153 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV 212
           IA+G G  K++ S   +  +++ D     ++   F+ ++  I+ G+  ++    ++  + 
Sbjct: 122 IAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY 177

Query: 213 GRSWGYGICSICMFTAILIFL 233
           G S  + +  + M   ++ F 
Sbjct: 178 GWSVAFALSVVGMLITVVNFA 198

Length = 500

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.94
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.93
PRK11663	434	regulatory protein UhpC; Provisional	99.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
TIGR00898	505	2A0119 cation transport protein.	99.9
PRK03699	394	putative transporter; Provisional	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
KOG0569	485	consensus Permease of the major facilitator superf	99.9
PRK03633	381	putative MFS family transporter protein; Provision	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.9
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.89
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.89
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
PRK11043	401	putative transporter; Provisional	99.88
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.87
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
KOG0254	513	consensus Predicted transporter (major facilitator	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.86
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.85
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.85
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.85
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.84
PRK11010	491	ampG muropeptide transporter; Validated	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
TIGR00901	356	2A0125 AmpG-related permease.	99.81
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.81
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.79
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.77
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.76
PRK09848	448	glucuronide transporter; Provisional	99.76
PRK09669	444	putative symporter YagG; Provisional	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.75
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.73
TIGR00805	633	oat sodium-independent organic anion transporter.	99.73
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.72
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.72
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.71
PTZ00207	591	hypothetical protein; Provisional	99.71
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.71
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.7
PF13347	428	MFS_2: MFS/sugar transport protein	99.68
PRK11462	460	putative transporter; Provisional	99.65
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.64
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.63
KOG2533	495	consensus Permease of the major facilitator superf	99.63
COG2211	467	MelB Na+/melibiose symporter and related transport	99.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.55
PRK10642	490	proline/glycine betaine transporter; Provisional	99.5
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.46
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.43
PRK09952	438	shikimate transporter; Provisional	99.43
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.41
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.41
KOG2563	480	consensus Permease of the major facilitator superf	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.38
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.38
PRK03699	394	putative transporter; Provisional	99.37
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.35
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.35
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.35
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.34
PRK09705	393	cynX putative cyanate transporter; Provisional	99.32
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.32
PRK03545	390	putative arabinose transporter; Provisional	99.3
PRK09874	408	drug efflux system protein MdtG; Provisional	99.3
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.29
PRK12382	392	putative transporter; Provisional	99.29
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.28
PRK03633	381	putative MFS family transporter protein; Provision	99.27
PRK10489	417	enterobactin exporter EntS; Provisional	99.27
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.27
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
TIGR00893	399	2A0114 d-galactonate transporter.	99.26
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
PRK03893	496	putative sialic acid transporter; Provisional	99.24
PRK15075	434	citrate-proton symporter; Provisional	99.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.24
PRK09528	420	lacY galactoside permease; Reviewed	99.23
PRK11663	434	regulatory protein UhpC; Provisional	99.23
TIGR00891	405	2A0112 putative sialic acid transporter.	99.22
PRK11010	491	ampG muropeptide transporter; Validated	99.21
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.16
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.16
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.15
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.14
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.14
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.12
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.12
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.12
PRK10504	471	putative transporter; Provisional	99.11
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.1
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.1
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.1
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.08
KOG3626	735	consensus Organic anion transporter [Secondary met	99.08
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.08
TIGR00900	365	2A0121 H+ Antiporter protein.	99.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.06
PRK11902	402	ampG muropeptide transporter; Reviewed	99.05
PRK12307	426	putative sialic acid transporter; Provisional	99.02
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.02
PLN00028	476	nitrate transmembrane transporter; Provisional	99.01
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.01
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.0
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.0
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.99
PRK10091	382	MFS transport protein AraJ; Provisional	98.99
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.98
TIGR00895	398	2A0115 benzoate transport.	98.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.96
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.91
PRK10133	438	L-fucose transporter; Provisional	98.9
PRK10054	395	putative transporter; Provisional	98.9
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.89
PRK09848	448	glucuronide transporter; Provisional	98.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.87
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.85
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.81
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.8
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.79
KOG3762	618	consensus Predicted transporter [General function	98.77
TIGR00901	356	2A0125 AmpG-related permease.	98.76
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.74
PRK10429	473	melibiose:sodium symporter; Provisional	98.74
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.73
PRK11043	401	putative transporter; Provisional	98.73
KOG2532	466	consensus Permease of the major facilitator superf	98.72
TIGR00898	505	2A0119 cation transport protein.	98.71
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.68
PRK09669	444	putative symporter YagG; Provisional	98.64
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.61
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.6
KOG0569	485	consensus Permease of the major facilitator superf	98.6
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.58
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.57
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.57
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.51
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.5
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.49
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.35
PRK11462	460	putative transporter; Provisional	98.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.32
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.31
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.3
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.3
COG0477	338	ProP Permeases of the major facilitator superfamil	98.29
COG2211	467	MelB Na+/melibiose symporter and related transport	98.22
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.16
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.15
PF12832	77	MFS_1_like: MFS_1 like family	98.06
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.06
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.04
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.03
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.02
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.0
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.98
TIGR00805	633	oat sodium-independent organic anion transporter.	97.94
KOG2533	495	consensus Permease of the major facilitator superf	97.94
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.94
KOG3762	618	consensus Predicted transporter [General function	97.85
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.8
KOG0637	498	consensus Sucrose transporter and related proteins	97.77
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.7
PTZ00207	591	hypothetical protein; Provisional	97.58
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.46
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.39
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.31
KOG2615	451	consensus Permease of the major facilitator superf	97.2
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.19
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.14
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.09
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.86
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.85
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.78
KOG2563	480	consensus Permease of the major facilitator superf	96.72
PRK03612	521	spermidine synthase; Provisional	96.35
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.25
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.87
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.67
COG3202	509	ATP/ADP translocase [Energy production and convers	95.62
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.54
KOG3626	735	consensus Organic anion transporter [Secondary met	95.42
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.85
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.69
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.19
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.58
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.85
KOG3098	461	consensus Uncharacterized conserved protein [Funct	91.01
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.26
KOG0637	498	consensus Sucrose transporter and related proteins	89.78
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.75
KOG3810	433	consensus Micronutrient transporters (folate trans	89.18
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	89.1
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.06
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	88.95
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.93
KOG3880	409	consensus Predicted small molecule transporter inv	87.33
KOG3097	390	consensus Predicted membrane protein [Function unk	86.92
COG0477	338	ProP Permeases of the major facilitator superfamil	84.91
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	84.58

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-44  Score=388.92  Aligned_cols=545  Identities=50%  Similarity=0.777  Sum_probs=479.2

Q ss_pred             cccCCCCcccc---ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008020           13 VDYKGFPADRS---KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLA   89 (581)
Q Consensus        13 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~la   89 (581)
                      .++...+..+.   +++.|++...++..+.++++++|++..++..|+++.+|.+..++...+..+.......++++++++
T Consensus        18 ~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~la   97 (571)
T KOG1237|consen   18 VDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLA   97 (571)
T ss_pred             eeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            33444444443   678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-CCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhc
Q 008020           90 DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC-QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFG  168 (581)
Q Consensus        90 D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~  168 (581)
                      |.++||.+++.++.++..+|..++.++...+.+.|++| ...+...|+..+..+...++.++.+.++|.|+..|+..++.
T Consensus        98 D~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG  177 (571)
T KOG1237|consen   98 DSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG  177 (571)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence            99999999999999999999998888888899888887 33444578888888999999999999999999999999999


Q ss_pred             ccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCCh
Q 008020          169 TDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSP  248 (581)
Q Consensus       169 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (581)
                      +|++++..+.++..+...++|+++..++|..++..+..+++++.||.+.|.++.++.++++++++...+.++++++.+++
T Consensus       178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp  257 (571)
T KOG1237|consen  178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSP  257 (571)
T ss_pred             ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCc
Confidence            99999766655666779999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             hHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHH
Q 008020          249 IVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKM  328 (581)
Q Consensus       249 ~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (581)
                      ...+.+++..+.++++...|.++.............++.++.+++|++.+..+.+.  ......++|+.|..+.+|+.|.
T Consensus       258 ~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~  335 (571)
T KOG1237|consen  258 KTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKA  335 (571)
T ss_pred             hhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhh
Confidence            99999999999999888877664443111222233445677889999887765433  1222668899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccceeeeecccccccccc-ccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCC-CC
Q 008020          329 VIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP-GF  406 (581)
Q Consensus       329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~-~~  406 (581)
                      +++.+++|.....++..+.|+.++++.|+..+++..++ +.+|+..+..+..+..++..|+.+++..|+.||..+++ ..
T Consensus       336 ~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~  415 (571)
T KOG1237|consen  336 VLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGI  415 (571)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCC
Confidence            99999999999999999999999999999999999987 99999999999999999999999999999999998866 78


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhH
Q 008020          407 SNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKT  486 (581)
Q Consensus       407 ~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg  486 (581)
                      +.++++.+|+.+..+++...+..+.++.+....+  .+.+.+++.+|++++|+++|++|.+...+..++..+++|++||+
T Consensus       416 t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~--~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS  493 (571)
T KOG1237|consen  416 TPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL--LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS  493 (571)
T ss_pred             ChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc--cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH
Confidence            8999999999999999999999988876665431  12234789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 008020          487 MSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK  563 (581)
Q Consensus       487 ~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  563 (581)
                      .+++++.+...+|+.++..++..+...+++  ..+|++ +++|.+++..+||+++....+....+.++.++++.++.+
T Consensus       494 ~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  494 VATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            999999999999999999999988876654  468999 899999999999999999999999999998888776553

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-39  Score=328.83  Aligned_cols=462  Identities=23%  Similarity=0.306  Sum_probs=352.5

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH
Q 008020           23 SKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH----LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT   98 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~   98 (581)
                      ..-+|||.++.++..++||+++||++...+..|+..+++    ++.+++..+.+.|.....+.++++||+|||++|+|++
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            445789999999999999999999999999999998887    9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020           99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK  178 (581)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +..+.++.++|.++++.+.                      ......++++..++.+|.|+..|++.++++|++|+++++
T Consensus        95 I~lGail~~iGh~~L~~~~----------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          95 IVLGAILMAIGHLVLAISS----------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             HHHHHHHHHHHHHHHhccc----------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            9999999999999998762                      012667999999999999999999999999999999987


Q ss_pred             HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCC--hhH------
Q 008020          179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS--PIV------  250 (581)
Q Consensus       179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------  250 (581)
                          |..+++++|.+.|+|++++|++.+++.+++||+..|.++++....+++.++++++.........+  +..      
T Consensus       153 ----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~  228 (498)
T COG3104         153 ----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP  228 (498)
T ss_pred             ----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence                99999999999999999999999999999999999999999999999999988876654432221  110      


Q ss_pred             HHHHHHHHHHhhcccccCCCccccccCCccccccccCcccch-hccccccccCCCCCCCCccCCCCcccCcchhHhHHHH
Q 008020          251 HICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRC-LDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMV  329 (581)
Q Consensus       251 ~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (581)
                      .....+...+...-       ..+.          ..+.... .....+..+..+.    .....+   ++.. +++|++
T Consensus       229 ~~~~~~~~~~~~~~-------~~~l----------~~~~~~~~~~~~~i~~~~~~~----~~~~~~---~~~~-~er~r~  283 (498)
T COG3104         229 VLGGLVVMILAALL-------TLLL----------NQNTFSGVLLVISILIAIIYF----AEAFRS---PKVF-DERRRL  283 (498)
T ss_pred             hHHHHHHHHHHHHH-------HHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHhcc---CccH-HHHHHH
Confidence            00011111110000       0000          0000000 0000000000000    000111   2223 778899


Q ss_pred             HHHHHHHHHHHHHHhhhccccceeeeec-cccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCCh
Q 008020          330 IRLLPIWATTILFWSTYAQMITFSVEQA-TTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSN  408 (581)
Q Consensus       330 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~  408 (581)
                      +..+.+++..++||+.+.|+++.+..+. +..+++..|+.+++++++++|.+.+++++|+.++++.|+.++..   .++.
T Consensus       284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~---~ps~  360 (498)
T COG3104         284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK---QPST  360 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC---CCCc
Confidence            9999999999999999999998665554 44556656689999999999999999999999999999877763   5888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHH
Q 008020          409 LQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMS  488 (581)
Q Consensus       409 ~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~  488 (581)
                      +.++.+|+.+++.+++++........         ++....+.+|+++.|+++++||.+.+|+..+++.+.+|+++.+..
T Consensus       361 ~~KFalGl~l~g~~fl~l~~~~~~~~---------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~  431 (498)
T COG3104         361 PIKFALGLILAGLGFLILLLAGIWFG---------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFI  431 (498)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHH
Confidence            89999999999999988876632210         112257889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020          489 TGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY  557 (581)
Q Consensus       489 ~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~  557 (581)
                      ++++.+.+..+..++..+++.... +         .+..+......+|+..+...++..+......++.
T Consensus       432 ma~wfLt~a~~~~l~g~va~~~~~-~---------~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~  490 (498)
T COG3104         432 MAMWFLTVAAGQTLGGQVAGLTAV-T---------DPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKL  490 (498)
T ss_pred             HHHHHHHHHHHHHhhceecccccc-c---------chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999998888762110 0         0001222234567777777776666666555543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=4.7e-35  Score=315.18  Aligned_cols=462  Identities=18%  Similarity=0.259  Sum_probs=328.5

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      ++|||.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ++.++.++++++.+                       ....++++|.++++|.|+..|+..++++|++|+++++    |+
T Consensus        90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~  142 (489)
T PRK10207         90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD  142 (489)
T ss_pred             HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence            99999999887622                       1234668999999999999999999999999987632    68


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc--CCCCChhH--HHHHHH----
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK--KCSGSPIV--HICQVV----  256 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~l----  256 (581)
                      +++++++++.|+|..+||.+++++.++.||++.|+++.+..+++++.+...++.+++.  ++++++.+  ......    
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~  222 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV  222 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence            8999999999999999999999999999999999998776666666665555444332  12121111  110000    


Q ss_pred             --HHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH
Q 008020          257 --VAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP  334 (581)
Q Consensus       257 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  334 (581)
                        .......... .........      .........++..                     ..+.++ ..+++.+....
T Consensus       223 ~~~~~~~~~~~~-~~~~~~~~~------~~~~i~~~~f~~~---------------------~~~~~~-~~r~r~~~~~~  273 (489)
T PRK10207        223 VMIFVCAWLMHN-VEVANLVLI------VLSIVVTIIFFRE---------------------AFKLDK-TGRNKMFVAFV  273 (489)
T ss_pred             HHHHHHHHHHhh-hhHHHHHHH------HHHHHHHHHHHHH---------------------HhcCCH-HHHHHHHHHHH
Confidence              0000000000 000000000      0000000000000                     001112 23445555666


Q ss_pred             HHHHHHHHHhhhccccceeeeecc-ccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHH
Q 008020          335 IWATTILFWSTYAQMITFSVEQAT-TMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIA  413 (581)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~  413 (581)
                      ++....++|..+.|....+..+.. ..+....|+.++++.++++|.+.+++..|+.+++.+|+.+|..   .+++..++.
T Consensus       274 l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~---~~~~~~k~~  350 (489)
T PRK10207        274 LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK---DLSMPMKFT  350 (489)
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC---CCCcHHHHH
Confidence            677788889999888665444332 3455555778888899999999999999999988777765543   467888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH
Q 008020          414 IGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL  493 (581)
Q Consensus       414 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~  493 (581)
                      +|+++.+++++.+.......   ...+      ...+.+++++.+++.++||.+..|+.++++.+.+|++++|.++|+++
T Consensus       351 ~G~~l~~~~~~~~~~~~~~~---~~~~------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~  421 (489)
T PRK10207        351 LGMFLCSLGFLTAAAAGMWF---ADAQ------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF  421 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---cCCC------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99999988877654332110   0001      13567888899999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          494 TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       494 ~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                      +.+.+|+.+|..++..... . ....++.    .....+.++|...++.+++..+++++..++.++.
T Consensus       422 l~~~ig~~lg~~l~~~~~~-~-~~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        422 LTQAAAFLLGGYVATFTAV-P-DNITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHHHhcc-c-cccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765421 0 0000010    0112346778888888888877777776655544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=3.4e-34  Score=308.30  Aligned_cols=452  Identities=15%  Similarity=0.229  Sum_probs=325.9

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIF  102 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~  102 (581)
                      .+++|.++.+++.++++++++|++.++++.|++++  +|++..+++.+.+.+.++..++++++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            46788999999999999999999999999999887  9999999999999999999999999999999933999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020          103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (581)
                      .++.+++.++++++.                        +...++++|.+.++|.|+..|+..++++|++|+++..   +
T Consensus        86 ~~~~~~g~~~~~~~~------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~  138 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---R  138 (475)
T ss_pred             HHHHHHHHHHHHhcc------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---c
Confidence            999999998887652                        2566888999999999999999999999999875411   2


Q ss_pred             HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhH----HH-HH--H
Q 008020          183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIV----HI-CQ--V  255 (581)
Q Consensus       183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~  255 (581)
                      |++++++++.+.|+|..+||.+++++.++.||++.|.++++..+++++.+...++.+++.++++++.+    +. .+  .
T Consensus       139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (475)
T TIGR00924       139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA  218 (475)
T ss_pred             ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence            88899999999999999999999999998999999998887766666666555544433222111110    00 00  0


Q ss_pred             ----HHHHHhhcccccCCCccccccCCccccccccCccc-chhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHH
Q 008020          256 ----VVAARKKRKVELPSSTASLYEDYPEESRIQHTYQF-RCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVI  330 (581)
Q Consensus       256 ----l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  330 (581)
                          +....+..... .+....       + ........ .+......            ...+    ..+. .++++..
T Consensus       219 ~~~~~~~~~~~~~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~------------~~~~----~~~~-~~~~~~~  272 (475)
T TIGR00924       219 LLAALALVFFCAWLM-HHVVIA-------N-ILLMTVTLAVIIFFFRL------------AFKP----RLDA-VARNKMY  272 (475)
T ss_pred             HHHHHHHHHHHHHHH-hccHHH-------H-HHHHHHHHHHHHHHHHH------------HHhc----cCCH-HHHhHHH
Confidence                00000000000 000000       0 00000000 00000000            0000    0111 2234444


Q ss_pred             HHHHHHHHHHHHHhhhccccceee-eeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChh
Q 008020          331 RLLPIWATTILFWSTYAQMITFSV-EQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNL  409 (581)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~  409 (581)
                      ..+.++....++|..+.|..+.+. ++....+.+.+++.++++++.++|.+.+++.+|+.+++..++.+|..   .++..
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~---~~~~~  349 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK---DPTTP  349 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC---CCCcH
Confidence            567778888899999999887443 33344566667788999999999999999999999977656655422   35666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHH
Q 008020          410 QLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMST  489 (581)
Q Consensus       410 ~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~  489 (581)
                      .++.+|+++.+++++.+++....    .+      .+...+++++++.+++.++||.+..|..++++.+.+|+++||+++
T Consensus       350 ~k~~~G~~l~~~~~~~~~~~~~~----~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       350 LKFTLGMLFCGASFLTFAASIWF----AD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----cC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence            77899999999998887765211    11      112468889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020          490 GLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK  558 (581)
Q Consensus       490 gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~  558 (581)
                      |++.....+|..+++.+......                ..+..++|...++.+++..+++++..+..+
T Consensus       420 g~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       420 GMWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888765421                112345677777777777777776655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=4.9e-34  Score=302.93  Aligned_cols=417  Identities=18%  Similarity=0.241  Sum_probs=308.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +|+|.++.++..++++++++|++..+++.|+++.+|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++.....                       ....++++..+..+|.|...++.+++++|++|+++++    |.+
T Consensus        86 ~~lg~lll~~~~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~s  138 (493)
T PRK15462         86 MAIGHVVLGASEI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDG  138 (493)
T ss_pred             HHHHHHHHHHhhc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccc
Confidence            9998876654311                       1233555666677888888899999999999987433    999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCC-CCChh--HHHHHHH-----H
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKC-SGSPI--VHICQVV-----V  257 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l-----~  257 (581)
                      ++++++...|+|+.++|.+++++.+..||++.|.++++..+++++.+...++.+.+... .+++.  ++.....     .
T Consensus       139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (493)
T PRK15462        139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV  218 (493)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887777777766665544432211 11111  1100000     0


Q ss_pred             H-----HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH
Q 008020          258 A-----ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL  332 (581)
Q Consensus       258 ~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  332 (581)
                      .     ........   +                .......-...+....        ........+ .+.+++|++..+
T Consensus       219 ~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~er~r~~~~  270 (493)
T PRK15462        219 LLVATPALITVLFW---K----------------EWSVYALIVATIIGLG--------VLAKIYRKA-ENQKQRKELGLI  270 (493)
T ss_pred             HHHHHHHHHHHHHH---H----------------HHHHHHHHHHHHHHHH--------HHHHHHHhc-CCHHHHhhHHHH
Confidence            0     00000000   0                0000000000000000        000000001 223567888888


Q ss_pred             HHHHHHHHHHHhhhccccceeeee-ccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHH
Q 008020          333 LPIWATTILFWSTYAQMITFSVEQ-ATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQL  411 (581)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~  411 (581)
                      +.++....+||+.+.|.++.+... .++.+++++|+.+|+++++++|.+.+++++|+..++..++.+|..   .++...|
T Consensus       271 ~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~---~~s~~~K  347 (493)
T PRK15462        271 VTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR---TVRIWGK  347 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHH
Confidence            889999999999999988754333 367888888999999999999999999999999998877654322   4688889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH
Q 008020          412 IAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL  491 (581)
Q Consensus       412 l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi  491 (581)
                      +.+|+++++++++++.+.....    +.++      ..+.+|++..++++++||.+..|...+.+.+.+|++.||+.||+
T Consensus       348 fa~g~~~~g~~f~~l~~~~~~~----~~~~------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~  417 (493)
T PRK15462        348 FALGLGLMSAGFCILTLSARWS----AMYG------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGI  417 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc----CCCC------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHH
Confidence            9999999999998887653221    1111      46788899999999999999999999999999999999999999


Q ss_pred             HHHHH-hHHHHHHHHHHHHH
Q 008020          492 FLTTL-SLGFFFSSLLVSIV  510 (581)
Q Consensus       492 ~~~~~-~lg~~~g~~~~~~i  510 (581)
                      +.... .+|+.++..+....
T Consensus       418 w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        418 YMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            98744 68877777766644

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.1e-32  Score=298.17  Aligned_cols=458  Identities=18%  Similarity=0.223  Sum_probs=321.5

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      .+++|.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+.......++++|+++||++|||+++.++.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999988888777777788999999994499999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..++.++++++..                       ....+++++.++++|.|...++..++++|++|+++.+    |+
T Consensus        97 ~~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~  149 (500)
T PRK09584         97 VLAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LD  149 (500)
T ss_pred             HHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hh
Confidence            99999888876521                       1455778899999999999999999999999876533    66


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc--CCCCChhH--HHH----HHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK--KCSGSPIV--HIC----QVV  256 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~----~~l  256 (581)
                      +++++++++.++|..+||.+++++.++.||++.|++..+..+++++.+.+..+..++.  ++..++.+  ...    ...
T Consensus       150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (500)
T PRK09584        150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV  229 (500)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence            7889999999999999999999999999999999988876666665554444333222  11111111  100    000


Q ss_pred             HHH-HhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHHHHH
Q 008020          257 VAA-RKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIRLLP  334 (581)
Q Consensus       257 ~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~  334 (581)
                      ... ......+.++.....               . .........          .  .++ ....++ .++++.+..+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~----------~--~~~~~~~~~~-~~~~~~~~~~~  280 (500)
T PRK09584        230 ALIAIATWLLHNQEIARMA---------------L-GVVALGIVV----------I--FGKEAFAMKG-AARRKMIVAFI  280 (500)
T ss_pred             HHHHHHHHHHhcchHHHHH---------------H-HHHHHHHHH----------H--HHHHHhhcCH-HHHHHHHHHHH
Confidence            000 000000000000000               0 000000000          0  000 001122 34455556666


Q ss_pred             HHHHHHHHHhhhccccceeeeec-cccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHH
Q 008020          335 IWATTILFWSTYAQMITFSVEQA-TTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIA  413 (581)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~  413 (581)
                      +++...++|+.+.|.++.+..+. ...+.+..++.+++++++++|.+.+++.+|+.+++..|+.+|      .+..+++.
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------~~~~~~~~  354 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------LPMPHKFA  354 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------CCcHHHHH
Confidence            77888899999999988766544 234555667788899999999999999999998876544433      44677899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH
Q 008020          414 IGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL  493 (581)
Q Consensus       414 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~  493 (581)
                      +|+++.+++++.+......    .+.      ....+.+++++.+++.++||.+..|...+++.+.+|+++||+++|++.
T Consensus       355 ~G~~l~~l~f~~l~~~~~~----~~~------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        355 IGMVLCSGAFLVLPLGAKF----AND------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHh----cCC------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999999887765321    011      114667789999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          494 TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       494 ~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                      +...+|+.++..+...+..  .....++.    ...+++.++|...++++++..++.+...++.++.
T Consensus       425 l~~a~g~~~~g~~~~~~~~--~~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        425 LTTAGAALIAGYVANLMAV--PDNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHHHHHHHHHHHhcc--ccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888877754310  00000000    1112356778888877776666666666655543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=4.3e-24  Score=225.54  Aligned_cols=376  Identities=12%  Similarity=0.034  Sum_probs=248.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +.+|.+..+.+..+...++.....+.++.|+++++|.+..+.+++.+++.++..+++++.|+++||+ ||||++..+.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence            3355778888899999999998999999999999999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+.+.++...++                ....+...+++.|+++|++.+...+...+++.|.+|+++      |++
T Consensus        91 ~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (399)
T PRK05122         91 CALSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR  148 (399)
T ss_pred             HHHHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence            8887766554421110                001236678999999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      ++++.....++|..+||.+++++.+..||+..+++..+..++.....   .+ .+..++++++.                
T Consensus       149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~----------------  208 (399)
T PRK05122        149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGER----------------  208 (399)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCccc----------------
Confidence            99999888999999999999999888999998876655433322221   11 11000000000                


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWS  344 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~  344 (581)
                                                                     .++       .+..|+...... .......+..
T Consensus       209 -----------------------------------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~  234 (399)
T PRK05122        209 -----------------------------------------------LPF-------RRVLGRVWPYGMGLALASIGFGT  234 (399)
T ss_pred             -----------------------------------------------hhH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                           000       000011111000 0011111111


Q ss_pred             hhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020          345 TYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA  424 (581)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~  424 (581)
                      .....+.++..+  +.  .      ..........++.++..++.+++.+|..+|          +.+..+..+.+++++
T Consensus       235 ~~~~~~~~~~~~--~~--~------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~~~~~~~~~~~  294 (399)
T PRK05122        235 IATFITLYYAAR--GW--D------GAALALTLFGVAFVGARLLFGNLINRLGGL----------RVAIVSLLVEILGLL  294 (399)
T ss_pred             HHHHHHHHHHHc--cc--c------cchHHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHH
Confidence            111111111110  00  0      111222233444455555556655443332          225555666666655


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHH
Q 008020          425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSS  504 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~  504 (581)
                      .+...                   .+.+.+++..++.|++.+...|.......+..|++.||+++|+++....+|..+++
T Consensus       295 ~~~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~  355 (399)
T PRK05122        295 LLWLA-------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITG  355 (399)
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44432                   12334455667889998888888888888999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020          505 LLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLC  553 (581)
Q Consensus       505 ~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~  553 (581)
                      .+.+.+.+.                .+++..|++.+++.++++++.++.
T Consensus       356 ~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        356 PLAGLVASW----------------FGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence            888876531                123566777777777766655544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=4.6e-24  Score=224.67  Aligned_cols=372  Identities=14%  Similarity=0.067  Sum_probs=241.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |..++.+.+..++.....+...+.+ +.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            3345555665555555555433334 456779999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.+++.++.                        +.+.+++.|+++|++.+...+...+++.|++|+++      |++++
T Consensus        86 ~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~  135 (390)
T PRK03545         86 ASHVLSALAW------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQAL  135 (390)
T ss_pred             HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHH
Confidence            9998888772                        38889999999999999888999999999999988      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL  267 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  267 (581)
                      +++....++|..++|.+++.+.+..|||+.|++.++..++.........++.+++  ++++.+.    .           
T Consensus       136 g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~----~-----------  198 (390)
T PRK03545        136 SLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE--HSGSLKS----L-----------  198 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CcchHHH----H-----------
Confidence            9999999999999999999998889999999988776555544433322221110  0000000    0           


Q ss_pred             CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH-HHHHHHHHHHHhhh
Q 008020          268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL-LPIWATTILFWSTY  346 (581)
Q Consensus       268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~  346 (581)
                                                                           .+..+.+.+... ..........+...
T Consensus       199 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (390)
T PRK03545        199 -----------------------------------------------------PLLFRRPALVSLYLLTVVVVTAHFTAY  225 (390)
T ss_pred             -----------------------------------------------------HHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence                                                                 000000111111 11111111112222


Q ss_pred             ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020          347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~  426 (581)
                      ...+.++ ....+.+..      ..+.+.....+..++...+.+++.+|..+|           .+..+..+..++...+
T Consensus       226 ~~~~~~l-~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~-----------~~~~~~~~~~~~~~~l  287 (390)
T PRK03545        226 SYIEPFV-QQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRLGNRHPSG-----------FLLIAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHH-HHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHHhhccchh-----------HHHHHHHHHHHHHHHH
Confidence            1111111 110111111      122233334445555555555554332211           1344444444443333


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020          427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL  506 (581)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~  506 (581)
                      ...                  ..+.+.+++..++.|++.+...+.....+.+..| +.|++++|+++....+|..+|+.+
T Consensus       288 ~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~  348 (390)
T PRK03545        288 LPA------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALL  348 (390)
T ss_pred             HHH------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            222                  1123445556677888887777888888888877 588999999999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020          507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA  554 (581)
Q Consensus       507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~  554 (581)
                      .|.+.+.                .++...|+..+.+.++++++.++..
T Consensus       349 ~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        349 GNQVSLH----------------LGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHhc----------------cChhHHHHHHHHHHHHHHHHHHHHc
Confidence            9877531                2235667777888888777776664

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=1e-23  Score=222.07  Aligned_cols=374  Identities=9%  Similarity=0.027  Sum_probs=244.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .+.++.+.+..++..++.....+.+|.|+.+++|+|..+.+++.+.+.++..++++++|+++||+ ||||++..+.+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG   92 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence            34677777888888888888889999999999999999999999999999999999999999998 99999999988777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.+........+.                ....+.+.++++|+++|++.+...+...+++.|.+|+++      |++++
T Consensus        93 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~  150 (392)
T PRK12382         93 LAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVM  150 (392)
T ss_pred             HHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhh
Confidence            66543322211110                011347789999999999999888888899999999988      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL  267 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  267 (581)
                      ++...+.++|..++|.+++++.+..||++.+.+..+..++...   +.. +.++.+++++...                 
T Consensus       151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~-----------------  209 (392)
T PRK12382        151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWA---FNG-TVRKVPAHAGERP-----------------  209 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH---HHH-hccCCCCCcccCc-----------------
Confidence            9999999999999999999998888999876655433222221   111 1111000000000                 


Q ss_pred             CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHH-HHHHHHHHHHHhhh
Q 008020          268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRL-LPIWATTILFWSTY  346 (581)
Q Consensus       268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~  346 (581)
                                                                    ++   +    +..|..... .........+....
T Consensus       210 ----------------------------------------------~~---~----~~~~~~~~~~~~~~l~~~~~~~~~  236 (392)
T PRK12382        210 ----------------------------------------------SL---W----SVVGLIWKPGLGLALQGVGFAVIG  236 (392)
T ss_pred             ----------------------------------------------hH---H----HHHHHHHHhHHHHHHHHHHHhHHH
Confidence                                                          00   0    000000000 00000111111111


Q ss_pred             ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020          347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~  426 (581)
                      ...+.++ .+ .+.       . ..........++.++..++.+++.+|..+|+.          +..+..+.+++++.+
T Consensus       237 ~~~~~~~-~~-~~~-------~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----------~~~~~~~~~~~~~~~  296 (392)
T PRK12382        237 TFVSLYF-AS-KGW-------A-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV----------AIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHHHHH-Hh-cCC-------c-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCee----------hHHHHHHHHHHHHHH
Confidence            1111111 10 000       0 11122223344455666667777655544321          455666666665544


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020          427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL  506 (581)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~  506 (581)
                      ...                   .+.+...+..++.+++.+...|.......+.+|++.||+++|+++....+|..+++.+
T Consensus       297 ~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~  357 (392)
T PRK12382        297 WLA-------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPL  357 (392)
T ss_pred             HHc-------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432                   1223445566778888888888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020          507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLC  553 (581)
Q Consensus       507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~  553 (581)
                      .+.+.+..                ++...|.+.+++.+++.++.++.
T Consensus       358 ~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        358 AGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence            98775421                23556777777777776666544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.94  E-value=4.4e-24  Score=237.26  Aligned_cols=156  Identities=15%  Similarity=0.107  Sum_probs=132.5

Q ss_pred             HHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008020           49 AVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQ  128 (581)
Q Consensus        49 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      ...+.+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.++++++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            34455567778999999999999999999999999999999998 999999999999888888887762           


Q ss_pred             CCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          129 ATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                                   +.+.++++|++.|+|.|+..+...++++|.+|++.      |++.+++......+|.++++.++..+
T Consensus       254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         37889999999999999999999999999999988      99999999999999999998877655


Q ss_pred             hcc-------------cchhhHHHHHHHHHHHHHHHHHHc
Q 008020          209 QDE-------------VGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       209 ~~~-------------~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      ...             .+||+.|++.++..++.++..++.
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence            432             368898888777666655554444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=7.5e-24  Score=223.68  Aligned_cols=348  Identities=14%  Similarity=0.083  Sum_probs=232.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      +.++...++..++.+.+.+.++.|+++++|++..+.+.+.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999999999999999999999999999999999998 999999999999999888


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      ++....                        +.+.+++.|++.|++.+...|...+++.|.+|+++      |++++++.+
T Consensus        92 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~  141 (400)
T PRK11646         92 TMAIAH------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM  141 (400)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence            887652                        27778999999999998888999999999999888      999999999


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST  271 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  271 (581)
                      ...++|..+||.+++++. .+||++.|++.++..++..++.....++.+. ++..++..                     
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~---------------------  198 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRTPVR---------------------  198 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccchhhH---------------------
Confidence            999999999999999998 6799999998776555443332222221100 00000000                     


Q ss_pred             cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMIT  351 (581)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  351 (581)
                                                               ..+   + ....+ +.++....................+
T Consensus       199 -----------------------------------------~~~---~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p  232 (400)
T PRK11646        199 -----------------------------------------EGM---T-RVLRD-KRFVTYVLTLTGYYMLAVQVMLMLP  232 (400)
T ss_pred             -----------------------------------------HHH---H-HHHcC-chHHHHHHHHHHHHHHHHHHHHhhh
Confidence                                                     000   0 00001 1111111111111100000111111


Q ss_pred             eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020          352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV  431 (581)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~  431 (581)
                      .+.....+ .      ....+.+.....+..+......++..    +|+     .+..+.+..+.++.++++..++... 
T Consensus       233 ~~~~~~~~-~------~~~~g~l~~~~~~~~~~~~~~~~~~~----~~r-----~~~~~~~~~~~~~~~~~~~~l~~~~-  295 (400)
T PRK11646        233 IMVNDIAG-S------PSAVKWMYAIEACLSLTLLYPIARWS----EKR-----FRLEHRLMAGLLIMSLSMFPIGMVS-  295 (400)
T ss_pred             hhHHhhcC-C------chHHHHHHHHHHHHHHHHHHHHHHHH----HHh-----cchhHHHHHHHHHHHHHHHHHHHhh-
Confidence            11111000 0      11112222223332222222223332    221     1122335566666666665554331 


Q ss_pred             HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020          432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~  511 (581)
                                        +.+.++...++.+++.+...|...+++.+.+|++.||+++|++++...+|..+|+.+.|.+.
T Consensus       296 ------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        296 ------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence                              22334444566788888888999999999999999999999999999999999999999887


Q ss_pred             hhh
Q 008020          512 AAT  514 (581)
Q Consensus       512 ~~~  514 (581)
                      +.+
T Consensus       358 ~~~  360 (400)
T PRK11646        358 DLG  360 (400)
T ss_pred             HHH
Confidence            543

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=2.9e-24  Score=226.47  Aligned_cols=175  Identities=13%  Similarity=0.135  Sum_probs=153.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +.+|+++.+.+..++...+.+.+.++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+++.++.+.
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            3466788999999999999999999999999999999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.++..+++                        +.+.+++.+.+.+.+.+...++..++..|.+|+++      |++
T Consensus        83 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (395)
T PRK10054         83 FASGFIAIPLVN------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK  132 (395)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence            888887777662                        26667778888888877778889999999999888      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      ++++.+...++|..++|.+++++.+ .+|+.+|++.+++.++.++..
T Consensus       133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998875 689999998777666654433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.6e-23  Score=211.51  Aligned_cols=379  Identities=15%  Similarity=0.109  Sum_probs=265.6

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +..+..++.+.+..|+...+=+.....+|. +.+++|.|..++|++++.|.++..++.|+...++||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            344667888999999999888888877765 6779999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +++++.++++++   |+                     ++.++++|++.|+..|.+++...++..++.|+++      |+
T Consensus        87 lFi~~n~l~alA---p~---------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~  136 (394)
T COG2814          87 LFIVSNLLSALA---PS---------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG  136 (394)
T ss_pred             HHHHHHHHHHHh---cc---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence            999999999999   33                     9999999999999999999999999999999999      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCC-CChhHHHHHHHHHHHhhc
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCS-GSPIVHICQVVVAARKKR  263 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~  263 (581)
                      +++++...+..++..+|..++.++.+.+|||..|++..++.+++++..+...| .+..+++ +.+.++..+         
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~---------  206 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLR---------  206 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHH---------
Confidence            99999999999999999999999999999999999888777777766665544 0011110 011110000         


Q ss_pred             ccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHH-HHHHHHHHHHHHH
Q 008020          264 KVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMV-IRLLPIWATTILF  342 (581)
Q Consensus       264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~  342 (581)
                                                                                 ..+++++ ..+....+.....
T Consensus       207 -----------------------------------------------------------~l~~p~v~~~l~~t~l~~~g~  227 (394)
T COG2814         207 -----------------------------------------------------------LLRRPGVLLGLLATFLFMTGH  227 (394)
T ss_pred             -----------------------------------------------------------HhcCchHHHHHHHHHHHHcch
Confidence                                                                       0011111 1222223333334


Q ss_pred             HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020          343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG  422 (581)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~  422 (581)
                      +..|.+..+++... .+.+      ....++.....+++.++...+.+++.|| ..|          +.+.....++.+.
T Consensus       228 F~~ftYi~P~L~~v-~g~s------~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~----------~~l~~~~~l~a~~  289 (394)
T COG2814         228 FALYTYIRPFLESV-AGFS------VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR----------RALIAALLLLALA  289 (394)
T ss_pred             hhhHHhHHHHHHHc-cCCC------HhHHHHHHHHHHHHHHHHHHHHhhhccc-cch----------hHHHHHHHHHHHH
Confidence            44444433322211 1111      1112334455666777777777777654 221          2245555666666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020          423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF  502 (581)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~  502 (581)
                      ++.+.+..                  .+.+..+...++.++.........+....+.. ++.++.+++++..+.++|..+
T Consensus       290 ~l~l~~~~------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         290 LLALTFTG------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             HHHHHHhc------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHH
Confidence            65555442                  22233444445566655544455555555422 588999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020          503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY  557 (581)
Q Consensus       503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~  557 (581)
                      |..+.|.+.+.                .++....++.+.+.+++.++.+...++.
T Consensus       351 GA~lGG~v~~~----------------~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         351 GAALGGLVLDA----------------LGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHHHHHHHHHh----------------hchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988642                3345567777777777777776665443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=6.2e-24  Score=225.77  Aligned_cols=395  Identities=13%  Similarity=0.045  Sum_probs=246.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .+..++...++..++.......+|.+.+ +++.+..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         18 AFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLG   95 (417)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHH
Confidence            3445555666777766666666776654 5677999999999999999999999999999999 9999999888777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++.........                   .+.+.+++.|++.|++.+...+...+++.|.+|+++      |+++.++
T Consensus        96 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  150 (417)
T PRK10489         96 FIGLALNAFLPE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAI  150 (417)
T ss_pred             HHHHHHHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHH
Confidence            665543211011                   236778889999999988888888999999999887      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCC
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPS  269 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  269 (581)
                      .+...++|..+||.+++.+.+..+|++.|++..+..+++.+.....++..++++++.++.....                
T Consensus       151 ~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------  214 (417)
T PRK10489        151 TMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLL----------------  214 (417)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHH----------------
Confidence            9999999999999999999888899999988776665554443332211000000000000000                


Q ss_pred             CccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccc
Q 008020          270 STASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQM  349 (581)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  349 (581)
                                                                 ..+     +...+.+.+.......+............
T Consensus       215 -------------------------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (417)
T PRK10489        215 -------------------------------------------AGF-----RFLLASPVVGGIALLGGLLTMASAVRVLY  246 (417)
T ss_pred             -------------------------------------------HHH-----HHHHcChHHHHHHHHHHHHHHHHhHHHhh
Confidence                                                       000     00000011111111111111111111111


Q ss_pred             cceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 008020          350 ITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVV  429 (581)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~  429 (581)
                      +. +..+..+.+      ....+.+.....++.++...+.+++.    +|..      ..+.+..+.++.+++++.+...
T Consensus       247 p~-~~~~~~g~~------~~~~g~~~~~~~~g~~ig~~~~~~l~----~~~~------~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        247 PA-LADEVWQMG------AAQIGLLYAAVPLGAALGALTSGWLA----HSAR------PGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             HH-HHHhccCCC------hhHhHHHHHHHHHHHHHHHHHHHHhh----hccC------cchHHHHHHHHHHHHHHHHHcc
Confidence            11 111101111      11122333444455555555555443    2211      1122555666666665544322


Q ss_pred             HHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020          430 EVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI  509 (581)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~  509 (581)
                                         .+++......++.|++.+...+..++++.+..|++.||+++|+++..+.+|..+|+.+.|.
T Consensus       310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence                               1233445566677888888778888999999999999999999999999999999999998


Q ss_pred             HHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCchh
Q 008020          510 VKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPE  567 (581)
Q Consensus       510 i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  567 (581)
                      +.+..+                ....++..++..++..++.+...+++|++++||.++
T Consensus       371 l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        371 LGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            764221                133455566666665666666667888887777654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=2.6e-23  Score=220.09  Aligned_cols=356  Identities=13%  Similarity=0.064  Sum_probs=229.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      .+|..+.+.....+++.+..+..-...| .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            4455666666677777776666555555 45668999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++.++.                        +.+.+++.|++.|++.+...+...+++.|.+|+++      |++
T Consensus        90 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  139 (406)
T PRK11551         90 FGLFSLATAQAW------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT  139 (406)
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            888887776662                        27788999999999999999999999999999888      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      ++++.+...++|..+++.+++.+.+..+|++.|++..++.++.........++.++..++.....               
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------  204 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------------
Confidence            99999999999999999999888888899999988766544444333332222111000000000               


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWS  344 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~  344 (581)
                          +                .  ....+.  .                +   +..  + .++....... +......+.
T Consensus       205 ----~----------------~--~~~~~~--~----------------~---~~~--~-~~~~~~~~~~~~~~~~~~~~  238 (406)
T PRK11551        205 ----Q----------------R--APVLRA--L----------------F---GEG--R-ATATLLLWISYFFTLIVLYF  238 (406)
T ss_pred             ----h----------------h--hhhHHH--H----------------h---hhh--h-hhHHHHHHHHHHHHHHHHHH
Confidence                0                0  000000  0                0   000  0 0111111111 111111222


Q ss_pred             hhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020          345 TYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA  424 (581)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~  424 (581)
                      ...+.+.+...  .+.+      ....+.......++.++...+.+++.+|+.+|+          .+..+.+...++++
T Consensus       239 ~~~~~p~~~~~--~g~s------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~~~  300 (406)
T PRK11551        239 LLNWLPSLLVG--QGLS------RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR----------VVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHh--CCCC------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHH
Confidence            21111111111  1111      111233344445555666666666666554432          13334444444433


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHH
Q 008020          425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSS  504 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~  504 (581)
                      .+...                   .+.+.+....++.+++.....+..+++..|.+|++.||+++|+.+....++..+++
T Consensus       301 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~  361 (406)
T PRK11551        301 ALAAA-------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGP  361 (406)
T ss_pred             HHHhc-------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHh
Confidence            33322                   12233444556677777777888899999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 008020          505 LLVSIVK  511 (581)
Q Consensus       505 ~~~~~i~  511 (581)
                      .+.|.+.
T Consensus       362 ~~~g~l~  368 (406)
T PRK11551        362 LLAGQLL  368 (406)
T ss_pred             hhHhhhh
Confidence            9998764

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=4.6e-23  Score=222.60  Aligned_cols=407  Identities=10%  Similarity=0.005  Sum_probs=243.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .+.+|.+....++..+..+.+.+.+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            446788888899999888888888888775 6999999999999999999999999999999999 99999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.+++.++.                        +.+.++++|+++|++.+...|...+++.|.+|+++      |++++
T Consensus        87 ~~~~~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  136 (471)
T PRK10504         87 LGSLFCALSG------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM  136 (471)
T ss_pred             HHHHHHHHhC------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            8887776652                        27778999999999999999999999999999887      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL  267 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  267 (581)
                      ++.+...++|..+||.+++++.++.||++.|++......+..+......++.+.++.+.+.................  .
T Consensus       137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~--~  214 (471)
T PRK10504        137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLA--L  214 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHH--H
Confidence            99999999999999999999999999999999877665555544444333322221111111111100000000000  0


Q ss_pred             CCCccccccCCccccccccCcccc-hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh
Q 008020          268 PSSTASLYEDYPEESRIQHTYQFR-CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY  346 (581)
Q Consensus       268 p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  346 (581)
                      .+.....+.  .  ......-... ..-.....+++...    ....+.      +..+.|.+...+...+.........
T Consensus       215 ~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~l~~~~~~~~~l~~~~~~~~~~~~~  280 (471)
T PRK10504        215 DGSKGLGLS--P--LAIAGLVAVGVVALLLYLLHARNNN----RALFSL------KLFRTRTFSLGLAGSFAGRIGSGML  280 (471)
T ss_pred             hcCCcCCcc--h--HHHHHHHHHHHHHHHHHHHHHhcCC----CCccCH------HHhcccchHHHHHHHHHHHHHHHHH
Confidence            000000000  0  0000000000 00000000000000    000011      1111122222211111111111111


Q ss_pred             ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020          347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~  426 (581)
                      ....+++.....+.+      ....+.......+..+...++.+++.+|+.+|          +.+..+..+..+....+
T Consensus       281 ~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~~  344 (471)
T PRK10504        281 PFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----------RVLVATTLGLALVSLLF  344 (471)
T ss_pred             HHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHHHHHHHH
Confidence            111111111100111      11122223333344444445566665444333          22555666555554444


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020          427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL  506 (581)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~  506 (581)
                      .....                ..+.+.+...+++.|++.+...+..+..+.+.+|++.+|+++|++++.+.+|..+|+.+
T Consensus       345 ~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i  408 (471)
T PRK10504        345 MLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI  408 (471)
T ss_pred             Hhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence            43210                11222333456677888888899999999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 008020          507 VSIVKAAT  514 (581)
Q Consensus       507 ~~~i~~~~  514 (581)
                      .+.+.+..
T Consensus       409 ~g~ll~~~  416 (471)
T PRK10504        409 AGLLLGLF  416 (471)
T ss_pred             HHHHHHHh
Confidence            99876554

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.93  E-value=2.4e-23  Score=225.19  Aligned_cols=407  Identities=11%  Similarity=0.048  Sum_probs=231.8

Q ss_pred             cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCc
Q 008020           60 MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHAS  139 (581)
Q Consensus        60 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (581)
                      ++++..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.+++++....-.            .....+
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~------------~~~~~~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT------------SIGPDN  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc------------cccccc
Confidence            488999999999999999999999999999998 9999999999998888877765311000            000011


Q ss_pred             hhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cc
Q 008020          140 GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DE  211 (581)
Q Consensus       140 ~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~  211 (581)
                      ......++++|+++|++.|+..+...++++|++|+++      |++++++......+|..+++.+++.+.        +.
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            1235678899999999999999999999999999998      999999999999999999987766543        35


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc
Q 008020          212 VGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR  291 (581)
Q Consensus       212 ~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  291 (581)
                      .|||++|++.++..++..+..++..+..+....+++ .++..+.....     .+ ++...         +..  .+..+
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~-----~~-~~~~~---------~~~--~~~~~  252 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGK-QEQAEGILRKI-----MG-NTLAT---------QAL--QEIKH  252 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHH-----cC-ChhHH---------HHH--HHHHH
Confidence            689999998776665554443333221111100111 11100000000     00 00000         000  00000


Q ss_pred             hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccce---eeeecccccccccccc
Q 008020          292 CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITF---SVEQATTMQRSIGNFK  368 (581)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  368 (581)
                      ..      .+.                    .+..+..+...............+.+....   ..... ...... +.+
T Consensus       253 ~~------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~-g~~  304 (479)
T PRK10077        253 SL------DHG--------------------RKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAP-EIFKTL-GAS  304 (479)
T ss_pred             HH------HHh--------------------hhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHc-CCC
Confidence            00      000                    000000000000000000000011111000   00000 000000 011


Q ss_pred             c-cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 008020          369 I-PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTL  447 (581)
Q Consensus       369 ~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (581)
                      . ..........+..++..++..++.+|+.+|          ..+..+.++++++++.+......               
T Consensus       305 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r----------~~~i~~~~~~~v~~~~l~~~~~~---------------  359 (479)
T PRK10077        305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------  359 (479)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----------HHHHHhHHHHHHHHHHHHHHHhc---------------
Confidence            1 112222334444555666666666555444          22666777777776665543210               


Q ss_pred             eeeehhhHHHHHHHHHHHHHH-hhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCC
Q 008020          448 PISVFYLIPQFFLVGSGEGFM-YTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGEN  526 (581)
Q Consensus       448 ~~~~~~li~~~~l~g~~~~~~-~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~  526 (581)
                      .....+.+...++.+++.+.. .|..+.++.|.+|++.|++++|+.+..+.+++.+++.+.+.+..       .+|..+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~-------~~~~~~~  432 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDK-------NSWLVAH  432 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-------ccchhhh
Confidence            112223333344445554433 37788999999999999999999999999999999988876531       1333221


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCch
Q 008020          527 INKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVP  566 (581)
Q Consensus       527 ~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  566 (581)
                      .   +....|++.+++++++.++.+++.++.|+++.||.+
T Consensus       433 ~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  469 (479)
T PRK10077        433 F---HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME  469 (479)
T ss_pred             c---cCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHH
Confidence            1   123456777777777777777777887777665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.93  E-value=3e-23  Score=221.60  Aligned_cols=167  Identities=13%  Similarity=0.024  Sum_probs=142.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+..++..++..+..+.+...+|.+. +++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            444555555666555556666666554 57999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++++++.                        +.+.+++.|++.|++.|...+...+++.|++|+++      |++++++
T Consensus       102 ~~~~~~~~------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~  151 (434)
T PRK11663        102 NILFGFSS------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI  151 (434)
T ss_pred             HHHHHHHh------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence            88887762                        37788889999999999988999999999999888      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTA  228 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~  228 (581)
                      ++...++|..++|.+++++.+.+|||+.|++.++..++.
T Consensus       152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            999999999999999999998899999998776654433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.93  E-value=9.5e-24  Score=231.84  Aligned_cols=334  Identities=28%  Similarity=0.494  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008020           43 LSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQL  122 (581)
Q Consensus        43 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~  122 (581)
                      +++|++...+..|+.+.+|++.+++..+...+.....+.++++|+++|+++||++.+.++.++..+|..+++++.. +..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccc
Confidence            4689999999999999999999999999999999999999999999999999999999999999999988876532 110


Q ss_pred             CCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHH
Q 008020          123 RPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAV  202 (581)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~  202 (581)
                                     .+..+...++++..+.++|.|+..|+..++.+|++++++.   ++|.+++.++++++|+|+++++
T Consensus        80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHH
Confidence                           0012245578899999999999999999999999986532   2388999999999999999999


Q ss_pred             HHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccc
Q 008020          203 TVLVYIQDEV-------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLY  275 (581)
Q Consensus       203 ~~~~~l~~~~-------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~  275 (581)
                      .+.+++.+..       +|..+|.+++++.+++++++....++++++++.+++...+.+++..++++++...++.     
T Consensus       142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~-----  216 (654)
T TIGR00926       142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH-----  216 (654)
T ss_pred             HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence            9999997443       6999999999999999988888887777766766666666777766665432211110     


Q ss_pred             cCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeee
Q 008020          276 EDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVE  355 (581)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  355 (581)
                                  ...++.|.....               +   ..+.++++|++++++.++....++|..+.|..+.+..
T Consensus       217 ------------~~~~~ld~a~~~---------------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~  266 (654)
T TIGR00926       217 ------------WPLHWLDYAKDK---------------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTL  266 (654)
T ss_pred             ------------cchhHHHHhccc---------------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence                        001222222100               0   2235778899999999999999999999999988888


Q ss_pred             eccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 008020          356 QATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVK  432 (581)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~  432 (581)
                      |...++.+++++.+++..++.++.+.++++.|+.++.+.+..+|+..  .+++..++.+|+++.+++++++...+..
T Consensus       267 qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~--~ls~l~k~~iG~~la~la~~va~~ve~~  341 (654)
T TIGR00926       267 QATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT--RFTSLRKMAVGGLLAALSFFVAALVQLK  341 (654)
T ss_pred             HHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777888999999999999999999999887777776543  4778899999999999999888877654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=4.7e-23  Score=213.88  Aligned_cols=358  Identities=12%  Similarity=0.091  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020           33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL  112 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~  112 (581)
                      .++...++..++.......+|.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            4566777777777777777888776 5799999999999999999999999999999999 9999999999888887777


Q ss_pred             HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020          113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (581)
                      ..+....+                   +.+.+.++++|++.|++.+...+...+++.|.+|+++      |++++++.+.
T Consensus        81 ~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  135 (365)
T TIGR00900        81 LPFVALLG-------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQA  135 (365)
T ss_pred             HHHHHHcC-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHH
Confidence            66653111                   0247889999999999999999999999999999888      9999999999


Q ss_pred             HHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCcc
Q 008020          193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTA  272 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~  272 (581)
                      ..++|..++|.+++++.+..||++.|++..+..+++.+..+..+.+.++++++.+...+..+.                 
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  198 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRD-----------------  198 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHH-----------------
Confidence            999999999999999998899999998877666555444433322111100000000000000                 


Q ss_pred             ccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccc
Q 008020          273 SLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMIT  351 (581)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~  351 (581)
                                         .                   ...+     +...+.+.+...... ...............+
T Consensus       199 -------------------~-------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (365)
T TIGR00900       199 -------------------T-------------------REGI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFP  235 (365)
T ss_pred             -------------------H-------------------HhHH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                               0                   0000     000001111111111 1111111111111111


Q ss_pred             eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020          352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV  431 (581)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~  431 (581)
                      .+..+..+.+      ....+.+.....++.++...+.+++.++..+          .+.+..+..+.++++....+.. 
T Consensus       236 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-  298 (365)
T TIGR00900       236 YVQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLLGRYFKR----------MALMTGAIFVIGLAILVVGLTP-  298 (365)
T ss_pred             HHHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----------hHHHHHHHHHHHHHHHHHHhhc-
Confidence            1111100111      1112233334444455555555544332222          2224445555555554444331 


Q ss_pred             HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020          432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~  511 (581)
                                      . +.+.+.+..++.+++.+...+...+++.|.+|++.||+++|+.+....++..+++.+.|.+.
T Consensus       299 ----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~  361 (365)
T TIGR00900       299 ----------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA  361 (365)
T ss_pred             ----------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            1 23445566778899999999999999999999999999999999999999999999998765

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=3.5e-23  Score=224.70  Aligned_cols=401  Identities=12%  Similarity=0.049  Sum_probs=243.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |..+..+.+..++..+....+..-+|.. .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            3455666666777766666666656654 668999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCC-CCCChHHHhHHhhH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYF  186 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~  186 (581)
                      ++.++++++.                        +.+.++++|+++|+|.++..|.....+.+.+ |+++      |+++
T Consensus        83 ~~~~~~~~a~------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~  132 (495)
T PRK14995         83 LASLAAAFSP------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMA  132 (495)
T ss_pred             HHHHHHHHcC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHH
Confidence            9999998873                        2888999999999999998888887777766 5566      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChh-HHHHHH-----HHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPI-VHICQV-----VVAAR  260 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----l~~~~  260 (581)
                      ++++....++|..+||.+++++.++.|||+.|++...+.++.+++.....++.+.++.++.+. ..+...     +....
T Consensus       133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~  212 (495)
T PRK14995        133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSA  212 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887666665554444333322211111111 111000     01111


Q ss_pred             hhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHH
Q 008020          261 KKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTI  340 (581)
Q Consensus       261 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  340 (581)
                      ++.... ..+.......    -.....-...+...     +..       .+.|..  + ...-+.|.+.......+...
T Consensus       213 ~~~~~~-~~~~~~~~~~----~~~~~~~l~~f~~~-----e~~-------~~~p~~--~-~~lf~~~~~~~~~~~~~~~~  272 (495)
T PRK14995        213 KTALKG-FLSLWVTSLT----LLTGALLLGLFIRT-----QLA-------ASRPMI--D-MRLFTHRIILSGVVMAMTAM  272 (495)
T ss_pred             Hhcccc-CCchHHHHHH----HHHHHHHHHHHHHH-----Hhc-------CCCCCc--C-HHHhCCcccHHHHHHHHHHH
Confidence            110000 0000000000    00000000000000     000       011110  0 00111111111111111111


Q ss_pred             HHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHH
Q 008020          341 LFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSA  420 (581)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~  420 (581)
                      ..+..+..+.+.+.+...+.+      ....+.......+...+..++.+++.+|..+|          +.+..|.++.+
T Consensus       273 ~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~g~~~~~  336 (495)
T PRK14995        273 ITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR----------LVATGGMALSA  336 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----------HHHHHHHHHHH
Confidence            111111111111111101111      11223334444566666777777776554433          22556777766


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020          421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF  500 (581)
Q Consensus       421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~  500 (581)
                      +++..+.....                ..+.+......++.|++.+...+.....+.+.+|++.+|.+++++++.+.+|+
T Consensus       337 ~~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~  400 (495)
T PRK14995        337 LSFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGA  400 (495)
T ss_pred             HHHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHH
Confidence            66655543311                12333445567788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 008020          501 FFSSLLVSIVKA  512 (581)
Q Consensus       501 ~~g~~~~~~i~~  512 (581)
                      .+|+.+.+.+..
T Consensus       401 ~~G~ai~g~i~~  412 (495)
T PRK14995        401 GLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997754

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=6.1e-23  Score=217.16  Aligned_cols=379  Identities=14%  Similarity=0.085  Sum_probs=241.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhh-----hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-----SANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA  103 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~  103 (581)
                      |.+..+.+..++...+.....+.+|.|.+ ++|++..+     .+.+.+++.+...++.++.|+++||+ |||+++..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            45667778888888888888899999886 58888655     37888899999999999999999998 9999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++..++.+++....                        +.+.+++.|++.|++.+ ..+...+++.|.+|+++      |
T Consensus        92 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~  140 (408)
T PRK09874         92 LGMGIVMVLMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------S  140 (408)
T ss_pred             HHHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------h
Confidence            88888887776652                        37788999999999865 45777788899999888      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhc
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKR  263 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  263 (581)
                      +++.++.+...++|..++|.+++.+.+..+|++.|++..+..++..+......++.++..++++ ..+..          
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------  209 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-MLHMR----------  209 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-hhHHH----------
Confidence            9999999999999999999999999888999999988777655554443332222110000000 00000          


Q ss_pred             ccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHH
Q 008020          264 KVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILF  342 (581)
Q Consensus       264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~  342 (581)
                                                    +.....                   +     +.+........ .......
T Consensus       210 ------------------------------~~~~~~-------------------~-----~~~~~~~~~~~~~~~~~~~  235 (408)
T PRK09874        210 ------------------------------EVVTSL-------------------K-----NPKLVLSLFVTTLIIQVAT  235 (408)
T ss_pred             ------------------------------HHHHhC-------------------c-----CCchHHHHHHHHHHHHHHH
Confidence                                          000000                   0     00111111110 1111110


Q ss_pred             HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020          343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG  422 (581)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~  422 (581)
                      ......++.+..... . +..  ......+.+..+..+..++..+..+++.+|+.+|+          .+..+..+..++
T Consensus       236 ~~~~~~~~~~~~~~~-~-~~~--~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~----------~~~~~~~~~~~~  301 (408)
T PRK09874        236 GSIAPILTLYVRELA-G-NVS--NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK----------ILITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHh-c-cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch----------hHHHHHHHHHHH
Confidence            000000000000000 0 000  00000112223334445555666666665544432          244455544444


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020          423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF  502 (581)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~  502 (581)
                      ++.....                   .+.+.+.+..++.|++.+...|...+.+.+..|++.||+.+++++....+|..+
T Consensus       302 ~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~  362 (408)
T PRK09874        302 LIPMSFV-------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVT  362 (408)
T ss_pred             HHHHHHh-------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHh
Confidence            4333322                   123344556677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020          503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA  554 (581)
Q Consensus       503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~  554 (581)
                      |+.+.+.+.+.                .++...|++.+++.+++.+..++..
T Consensus       363 gp~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        363 GPLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             hHHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999876421                1235677888888777776665543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1e-22  Score=221.53  Aligned_cols=183  Identities=16%  Similarity=0.096  Sum_probs=137.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGG----TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA  103 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~  103 (581)
                      ++.+.+..+..++..+....+...++..-.+    +.+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.
T Consensus        15 ~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~   93 (502)
T TIGR00887        15 FRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence            3444455555555555554444434432221    2345666778999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++..++.++++++.+..                  ...+...++++|++.|++.|+..+....+++|.+|+++      |
T Consensus        94 ~~~~v~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------R  149 (502)
T TIGR00887        94 IIMIIATVASGLSPGSS------------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------R  149 (502)
T ss_pred             HHHHHHHHHHHHccCcc------------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------H
Confidence            99999888877652100                  01125789999999999999999999999999999999      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhc-----------------------ccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQD-----------------------EVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~-----------------------~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      +++.++.+....+|..+++.++..+..                       .++||+.|.+..+..++..+..++.
T Consensus       150 g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l  224 (502)
T TIGR00887       150 GAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI  224 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999888765421                       2479999987776666555444443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=9.5e-23  Score=213.41  Aligned_cols=153  Identities=20%  Similarity=0.228  Sum_probs=135.5

Q ss_pred             HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ...+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++++++.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            334457889999999999999999999999999999999998 999999999999999888887773             


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                                 +.+.++++|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.+++.+.+
T Consensus        81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence                       27889999999999999999999999999999888      9999999999999999999999999888


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          211 EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       211 ~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ..+|++.|++.++..++..+...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       144 HFSWQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             hCCchHHHHHHHHHHHHHHHHhhh
Confidence            899999999877665555444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.92  E-value=5.2e-23  Score=221.31  Aligned_cols=146  Identities=21%  Similarity=0.258  Sum_probs=125.0

Q ss_pred             CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchh
Q 008020           62 LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGI  141 (581)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (581)
                      .+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.+++.+.....                     
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~---------------------  125 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFAL---------------------  125 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcccc---------------------
Confidence            4489999999999999999999999999998 999999999999999888886653211                     


Q ss_pred             hHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH---HHhhcccchhhHH
Q 008020          142 QMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL---VYIQDEVGRSWGY  218 (581)
Q Consensus       142 ~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~---~~l~~~~g~~~~f  218 (581)
                      +.+.++++|++.|+|.+...+...++++|.+|+++      |++++++++.+.++|..+++.++   +...+..+||+.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            25678999999999999999999999999999998      99999999999999999999998   6666778999999


Q ss_pred             HHHHHHHHHHHHHHHHc
Q 008020          219 GICSICMFTAILIFLSG  235 (581)
Q Consensus       219 ~i~~~~~~~~~~~~~~~  235 (581)
                      ++..+..++.++..++.
T Consensus       200 ~~~~~~~~~~~~~~~~l  216 (481)
T TIGR00879       200 GLQLIPAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            98666555554444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.92  E-value=3.5e-22  Score=213.29  Aligned_cols=174  Identities=16%  Similarity=0.160  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CChhhhhh---HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMH---LPSATSAN---IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~---~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +....+..+++.+..+. .++..+++.++++   .+..+.+.   +.+..+++..++++++|+++||+ |||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence            33444456666666655 4556667777774   45554333   34444555559999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ++.+++++++++.+...                ........+++.|+++|+|.|+..|...++++|.+|+++      |+
T Consensus       102 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg  159 (432)
T PRK10406        102 MMCFGSLVIACLPGYET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KG  159 (432)
T ss_pred             HHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------cc
Confidence            99999999887632110                001124578999999999999999999999999999998      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFTA  228 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~~  228 (581)
                      ++.++.+...+.|..+++.+...+.        ..+|||++|++.++..++.
T Consensus       160 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        160 FYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            9999888888888888887665543        2579999999877655443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=4.8e-22  Score=209.51  Aligned_cols=174  Identities=13%  Similarity=0.145  Sum_probs=150.5

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020           24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~  103 (581)
                      .|..|+..+.+....++.....|...+.+|.+ .+++|+++.+.++..+.+.++..+++++.|+++||+ |||+++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~   92 (394)
T PRK10213         15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFA   92 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHH
Confidence            34567766666666666666666666666664 568999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++..++.+++.++.                        +.+.+++.|+++|++.+...+...+++.|.+|+++      |
T Consensus        93 ~~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~  142 (394)
T PRK10213         93 VLLTLSCLLVSFAN------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------V  142 (394)
T ss_pred             HHHHHHHHHHHHHC------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------H
Confidence            99999888887762                        38889999999999999999999999999999888      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~  229 (581)
                      +++.++.....++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998766554443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=7e-22  Score=209.20  Aligned_cols=158  Identities=11%  Similarity=0.057  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020           44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR  123 (581)
Q Consensus        44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      +...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||++.++.++..++.+++..+.      
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------   99 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------   99 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            44445555554 4578999999999999999999999999999999999 999999999988888888777662      


Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020          124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~  203 (581)
                                        +.+.+++.|++.|++.+...+...+.+.|.+|+++      |.++.++......+|..++|.
T Consensus       100 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~  155 (406)
T PRK15402        100 ------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPL  155 (406)
T ss_pred             ------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              27778899999999999888888999999999888      888888888778889999999


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          204 VLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       204 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +++++.+..+|++.|++.+++.++..+...
T Consensus       156 i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        156 VGAALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            999998888999999887766665554433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=5.3e-22  Score=206.65  Aligned_cols=159  Identities=14%  Similarity=0.072  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008020           42 RLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQ  121 (581)
Q Consensus        42 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~  121 (581)
                      +..+..+.+.+| .+++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++..+......+.+.....   + 
T Consensus         4 ~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~---~-   77 (368)
T TIGR00903         4 QAIWVTFSPVLS-LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDP---F-   77 (368)
T ss_pred             hHHHHHHHhhHH-HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHh---c-
Confidence            334444444444 55779999999999999999999999999999999999 99998766655554443322211   1 


Q ss_pred             CCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHH
Q 008020          122 LRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMA  201 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~  201 (581)
                                          +...++++|+++|+|.+.. +.....++|.+|+++      |++++++.+....+|..++
T Consensus        78 --------------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~  130 (368)
T TIGR00903        78 --------------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFA  130 (368)
T ss_pred             --------------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHH
Confidence                                2788999999999999864 555566789999888      9999999999999999999


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          202 VTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       202 ~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +.+++++.+.+|||+.|.+.+++.++..++.+
T Consensus       131 ~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903       131 LAAGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999886655544444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=9.9e-23  Score=210.47  Aligned_cols=166  Identities=21%  Similarity=0.326  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLA  114 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~  114 (581)
                      ++..++..+......+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4566777777777777777688899999999999999999999999999999999998 999999999999999866555


Q ss_pred             HhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHH
Q 008020          115 ISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVI  194 (581)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  194 (581)
                      ++   ++                     .+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+...
T Consensus        81 ~~---~~---------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~  130 (352)
T PF07690_consen   81 FA---SN---------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGF  130 (352)
T ss_dssp             HH---CC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHH
T ss_pred             hh---hh---------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchh
Confidence            54   22                     5589999999999999999999999999999998      999999999999


Q ss_pred             HhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          195 STGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       195 ~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      ++|..++|.+++++.+..+|++.|++.++..++..++
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999999998899999999888877776554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.91  E-value=1.1e-21  Score=212.63  Aligned_cols=177  Identities=15%  Similarity=0.053  Sum_probs=131.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhh-hhh-----HHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-SAN-----IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI  101 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~  101 (581)
                      ++.++...+..+++.+.+..+ .+..+++.++++.+..+ ..+     +.++..++..++++++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            445666667777777766654 34455777777644322 122     24667788999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020          102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~  181 (581)
                      +.+++.+++++++++.+...                ........++++|+++|+|.|+..+...++++|++|+++     
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~----------------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-----  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYAT----------------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-----  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHH----------------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence            99999999999988732100                000001248999999999999999999999999999999     


Q ss_pred             HHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHHH
Q 008020          182 QMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFTA  228 (581)
Q Consensus       182 ~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~~  228 (581)
                       |+++.++...+..+|..+|+.+...+.        ..+|||++|++.++..+++
T Consensus       152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence             999999988877888887776554432        2579999999876554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=4.2e-22  Score=210.00  Aligned_cols=174  Identities=14%  Similarity=0.189  Sum_probs=150.9

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020           24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA  103 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~  103 (581)
                      .+.+|+.+....+..++..+..+......+ .+++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            346677778888888888888877766665 56778999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++..++.+++.++.                        +++.+++.|++.|++.+...+...+++.|.+|+++      |
T Consensus        85 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~  134 (405)
T TIGR00891        85 VLFSAGTLACGFAP------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------R  134 (405)
T ss_pred             HHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------h
Confidence            99888888887762                        27888999999999999999999999999999988      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHH
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG--RSWGYGICSICMFTAI  229 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~  229 (581)
                      +++.++.+...++|..+++.+++.+.+..+  |++.|++..+..++.+
T Consensus       135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998887666  9999987665544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=6e-22  Score=206.95  Aligned_cols=169  Identities=10%  Similarity=0.030  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH-HHHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI-FATVQTFGTGLL  113 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~-~~~~~~~~~~~~  113 (581)
                      ++..++..++.....+.++.|+++++|.+..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.+...++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4567888888888999999999999999999999999999999999999999999998 99887654 555555566666


Q ss_pred             HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH--HHHHH
Q 008020          114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--FSRFF  191 (581)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~  191 (581)
                      +++.                        +++.+++.|++.+.+.+...|...++..|..|+++      |.+.  .+...
T Consensus        82 ~~~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~  131 (375)
T TIGR00899        82 AWNR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMR  131 (375)
T ss_pred             Hhcc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHH
Confidence            6552                        26778888888888777778888888888877665      5543  56777


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ...++|..++|.+++++.+..|||+.|++.+++.++..+..++
T Consensus       132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999998899999999887765555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.9e-22  Score=214.89  Aligned_cols=167  Identities=15%  Similarity=0.142  Sum_probs=144.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      .+++.+....+..+...+..+.... +.+++++++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFY-IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            3445566666777777766665544 44567789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.++++++.                        +.+.++++|++.|+|.|...+....++.|.+|+++      |++
T Consensus        93 ~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~  142 (426)
T PRK12307         93 YSVGTGLSGLAS------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSK  142 (426)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhH
Confidence            999998888773                        37889999999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSIC  224 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~  224 (581)
                      +.++...+..+|..+++.+.+.+.+..+||+.|++..+.
T Consensus       143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            999999999999999999999998889999999876543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=8.5e-22  Score=207.60  Aligned_cols=358  Identities=13%  Similarity=0.058  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020           45 TMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP  124 (581)
Q Consensus        45 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ++.+.+.+| .+++++|+|.++.+++.+.+.++..+++++.|+++||+ |||+++..+..+.+++.++++++++      
T Consensus        25 ~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~------   96 (393)
T PRK09705         25 LTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ------   96 (393)
T ss_pred             hhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc------
Confidence            344555555 56789999999999999999999999999999999999 9999999999999999999998832      


Q ss_pred             CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020          125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  204 (581)
                                        +..++++|+++|+|.+...+....++.|.+| ++      |+++++.+..+.+.|..+++.+
T Consensus        97 ------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~  151 (393)
T PRK09705         97 ------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAI  151 (393)
T ss_pred             ------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHH
Confidence                              7778999999999999999999999999986 66      8999999999999999999999


Q ss_pred             HHHhhccc-chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccc
Q 008020          205 LVYIQDEV-GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESR  283 (581)
Q Consensus       205 ~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~  283 (581)
                      ++++.++. +||..+.+..+..++.+...+...++.++    .++                     ++           +
T Consensus       152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------~~-----------~  195 (393)
T PRK09705        152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA----SSH---------------------KT-----------T  195 (393)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccc---------------------CC-----------C
Confidence            99888775 79988765544433333322222111100    000                     00           0


Q ss_pred             cccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHH-HHHHHHHHHHhhhccccceeeeecccccc
Q 008020          284 IQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLL-PIWATTILFWSTYAQMITFSVEQATTMQR  362 (581)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (581)
                         .                         .+.   +  ...+ ++.+... ...+....++......+.++..  .+.+ 
T Consensus       196 ---~-------------------------~~~---~--~l~~-~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s-  238 (393)
T PRK09705        196 ---T-------------------------TPV---R--VVFT-PRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS-  238 (393)
T ss_pred             ---c-------------------------CCc---c--cccC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-
Confidence               0                         000   0  0001 1111111 1112222222222222222211  1111 


Q ss_pred             ccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020          363 SIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~  442 (581)
                           ....+.......++.++...+.+++.+|..+|          +.+..++.+..++++.+....            
T Consensus       239 -----~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~----------~~~~~~~~l~~~~~~~~~~~~------------  291 (393)
T PRK09705        239 -----AQYSGSLLALMTLGQAAGALLMPAMARHQDRR----------KLLMLALVLQLVGFCGFIWLP------------  291 (393)
T ss_pred             -----hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch----------HHHHHHHHHHHHHHHHHHHcc------------
Confidence                 11122333444555566666665554333222          224556666555554443221            


Q ss_pred             CCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCC
Q 008020          443 TGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHG  521 (581)
Q Consensus       443 ~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~  521 (581)
                            .+...+  ...+.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+.++      
T Consensus       292 ------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g------  357 (393)
T PRK09705        292 ------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG------  357 (393)
T ss_pred             ------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------
Confidence                  111111  2234577777777877777677774 6899999999999999999999999998765432      


Q ss_pred             CcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020          522 WVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK  558 (581)
Q Consensus       522 w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~  558 (581)
                               .+...|.+.++.+++..++.+...++++
T Consensus       358 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        358 ---------NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             ---------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                     1234466666666666666666655544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=5.8e-22  Score=210.14  Aligned_cols=176  Identities=14%  Similarity=0.080  Sum_probs=148.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +|+.++.+.+..+++......+.. ..+.+++++|++..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            456666666666666666655544 44588999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++.++++++.+                        .+.++++|++.|++.+...|....++.|.+|+++      |+++
T Consensus        84 ~~~~~~~~~~~~------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~  133 (412)
T TIGR02332        84 GIASTATMFATG------------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARA  133 (412)
T ss_pred             HHHHHHHHHhcC------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHH
Confidence            999998887732                        7789999999999999999999999999999888      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQD------EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +++++...++|..+++.+++++.+      ..|||+.|++.++..++..++.++
T Consensus       134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~  187 (412)
T TIGR02332       134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF  187 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988863      369999999877665544433333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=3.1e-22  Score=216.80  Aligned_cols=400  Identities=14%  Similarity=0.117  Sum_probs=241.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .+..+.+..+...+........+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            344555566666666555555555 55678999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++++.+.                        +...++++|+++|++.+...+...+++.|.+|+++      |++++++
T Consensus        81 ~~~~~~~~------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  130 (485)
T TIGR00711        81 SLLCGVAP------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAI  130 (485)
T ss_pred             HHHHhCcC------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence            98887762                        27789999999999999999999999999999888      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCC-ChhHHHHHHH-----HHHHhhc
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG-SPIVHICQVV-----VAARKKR  263 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-----~~~~~~~  263 (581)
                      +.....+|..+||.+++++.++.+|++.|++..+..++..++..+..++.++++.++ +.........     .....+.
T Consensus       131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~  210 (485)
T TIGR00711       131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEG  210 (485)
T ss_pred             HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999877665555544443333221111111 1111100000     0000000


Q ss_pred             ccccCCCccccccCCccccccccCcccchhc-cccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHH
Q 008020          264 KVELPSSTASLYEDYPEESRIQHTYQFRCLD-KASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILF  342 (581)
Q Consensus       264 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  342 (581)
                          ++. .+.  .++   .+...-...... ......+..       .+.+..  ..+..++++........+.....+
T Consensus       211 ----~~~-~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  271 (485)
T TIGR00711       211 ----PER-GWF--DSN---EILILSITGLVAIIAFVVWELT-------DDNPLV--DLRLFKYRNFTIGCVYMSLLGLGL  271 (485)
T ss_pred             ----CCC-CCC--Cch---HHHHHHHHHHHHHHHHHHHHHc-------CCCCcc--CHHHHcCCChHHHHHHHHHHHHHH
Confidence                000 000  000   000000000000 000000000       001110  000011111111111111222222


Q ss_pred             HhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHH
Q 008020          343 WSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALG  422 (581)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~  422 (581)
                      +......+.++ ....+.+      ....+.......++.++..++.+++.+|..+|          +.+..+..+.+++
T Consensus       272 ~~~~~~~p~~~-~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----------~~~~~g~~~~~~~  334 (485)
T TIGR00711       272 YGSFYLLPLYL-QQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----------KLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHHHHH-HHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----------HHHHHHHHHHHHH
Confidence            22211111111 1100111      11123344445566667777777766544333          2356677666666


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHH
Q 008020          423 MASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFF  502 (581)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~  502 (581)
                      ...+.+...               ...+.+.++...++.|++.+...+.......+..|++.||+++|+.++.+.+|+.+
T Consensus       335 ~~~~~~~~~---------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  399 (485)
T TIGR00711       335 FYWRAFTFT---------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI  399 (485)
T ss_pred             HHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH
Confidence            655542110               02233445556778899999988888888889999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 008020          503 SSLLVSIVKA  512 (581)
Q Consensus       503 g~~~~~~i~~  512 (581)
                      |+.+.+.+..
T Consensus       400 g~~i~g~~~~  409 (485)
T TIGR00711       400 GTALITTILT  409 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999987653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=1e-21  Score=212.10  Aligned_cols=177  Identities=12%  Similarity=0.014  Sum_probs=135.8

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +++++.++......++.....+.+.+.++ ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~  109 (476)
T PLN00028         32 RPHMRAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLM  109 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            34445666666666666666666655444 66789999999999999999999999999999999998 99999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..++.++++++.                        +...+++.|++.|++.+...+ ...+++|++|+++      |+
T Consensus       110 ~~~~~~~~~~~~~------------------------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg  158 (476)
T PLN00028        110 LTAPAVFCMSLVS------------------------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VG  158 (476)
T ss_pred             HHHHHHHHHHHhc------------------------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------ee
Confidence            8888888777662                        267788899999999886543 4567899999988      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhh----c-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQ----D-----EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~----~-----~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +++++.+...++|..+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       159 ~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        159 TANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999988777778877766655442    2     258999999877766554444333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=2.4e-22  Score=209.42  Aligned_cols=353  Identities=12%  Similarity=0.015  Sum_probs=219.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |+.........+... ..|.+ ..+.+++.+++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~   79 (377)
T TIGR00890         3 WYVLVGTVIMCFTSG-YVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG   79 (377)
T ss_pred             EEEeHHHHHHHHHhh-HHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence            333333333333333 34444 4455677889999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.++++++.                        +.+.++++|.+.|++.+...+.....+.+.+| ++      |+++.
T Consensus        80 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~  128 (377)
T TIGR00890        80 LGFTFYAIAD------------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLAS  128 (377)
T ss_pred             HHHHHHHHHH------------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHH
Confidence            9998888773                        37889999999999999888888888888886 45      89999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL  267 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  267 (581)
                      ++.....++|..+++.+.+.+.+..|||+.|++.++..++..+..+...++.++++.+++.                   
T Consensus       129 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  189 (377)
T TIGR00890       129 GIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-------------------  189 (377)
T ss_pred             HHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-------------------
Confidence            9999998999887666666666778999999987776555544433322211110000000                   


Q ss_pred             CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhc
Q 008020          268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYA  347 (581)
Q Consensus       268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  347 (581)
                       +.                .+      +               ....      .+..+.+.........+..........
T Consensus       190 -~~----------------~~------~---------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (377)
T TIGR00890       190 -EV----------------SV------K---------------DYTV------WEMLRTPQFWVLYLSFFLNAVSGLLLI  225 (377)
T ss_pred             -cc----------------ch------h---------------hhhH------HHHHcCccHHHHHHHHHHHhHHHHHHH
Confidence             00                00      0               0000      000000111111111111111111111


Q ss_pred             cccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008020          348 QMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS  427 (581)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~  427 (581)
                      .....+. +....+      ......+.....+..++..++.+++.+|+.+|+.          +..+.++..++.+.+.
T Consensus       226 ~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------~~~~~~~~~~~~~~~~  288 (377)
T TIGR00890       226 GLYKPYG-QSLGLS------DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT----------MSIVFGISAVGMAAML  288 (377)
T ss_pred             HHHHHHH-HHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hhHHHHHHHHHHHHHH
Confidence            1001010 000000      1112234445556666777777777766654421          4556666666655444


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020          428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV  507 (581)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~  507 (581)
                      ...                 ..+....+...++.+++.+...+....++.|.+|++.|++.+|+.+....+|..+++.+.
T Consensus       289 ~~~-----------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~  351 (377)
T TIGR00890       289 FIP-----------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIA  351 (377)
T ss_pred             Hcc-----------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence            321                 111122333345566666666677778899999999999999999999999999999999


Q ss_pred             HHHH
Q 008020          508 SIVK  511 (581)
Q Consensus       508 ~~i~  511 (581)
                      +.+.
T Consensus       352 g~l~  355 (377)
T TIGR00890       352 SHAL  355 (377)
T ss_pred             HHHH
Confidence            8775

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=1.2e-21  Score=201.82  Aligned_cols=348  Identities=22%  Similarity=0.282  Sum_probs=253.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      +.+....++..+..+...+.++.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            44566777888888888888888775 6799999999999999999999999999999998 999999999999999988


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      +.....                        +.+.++++|++.|++.+...+...+++.|.+|+++      |++.+++.+
T Consensus        80 ~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  129 (352)
T cd06174          80 LLAFAS------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFS  129 (352)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHH
Confidence            887762                        27889999999999999999999999999999988      999999999


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST  271 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  271 (581)
                      ...++|..++|.+++.+.+..+|++.|++..+..++..+...+..             +                     
T Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~---------------------  175 (352)
T cd06174         130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------------R---------------------  175 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------H---------------------
Confidence            999999999999999999988999999887776665554433321             0                     


Q ss_pred             cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMIT  351 (581)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  351 (581)
                                                                              .........+........+....+
T Consensus       176 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  199 (352)
T cd06174         176 --------------------------------------------------------LLLLLALAFFLLSFGYYGLLTYLP  199 (352)
T ss_pred             --------------------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHH
Confidence                                                                    000001011111111111111111


Q ss_pred             eeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 008020          352 FSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV  431 (581)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~  431 (581)
                      .+..+..+.+      ....+.......+..++..++.+++.+|..+|+.         .+..+..+..++.......  
T Consensus       200 ~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~--  262 (352)
T cd06174         200 LYLQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---------LLLIGLLLAALGLLLLALA--  262 (352)
T ss_pred             HHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHh--
Confidence            1111000111      1123344555666677777777777665544420         2666777777776655543  


Q ss_pred             HHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020          432 KRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~  511 (581)
                                       .+.+......++.+++.+...+....++.|..|++.|++.+|+.+..+.++..+++.+.+.+.
T Consensus       263 -----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         263 -----------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                             124556677888999999999999999999999999999999999999999999999998774


Q ss_pred             hhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 008020          512 AATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFL  551 (581)
Q Consensus       512 ~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~  551 (581)
                      +                ..++...+++.+++.+++.++.+
T Consensus       326 ~----------------~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         326 D----------------TGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             c----------------ccCcchHHHHHHHHHHHHHHHhe
Confidence            2                11224556777777777666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=1.9e-21  Score=207.81  Aligned_cols=178  Identities=11%  Similarity=0.083  Sum_probs=132.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChhhhhhHH-----HHHHHHHHHHHHHHHHHhhhcccchHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM--HLPSATSANIV-----TDFMGTSFLLCLLGGFLADSFLGRYRT   98 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~~~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Grr~~   98 (581)
                      .++|.++...+..+++.+....+....+.+..+++  +.++.+ +.+.     ++..++..++.++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            34566677777778877777665555555555544  566653 4433     234556678889999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020           99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK  178 (581)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +..+.++..+++++++++.+...                ........+++.|+++|++.|+..+....++.|.+|+++  
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~--  158 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFST----------------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK--  158 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHH----------------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC--
Confidence            99999999999999888732110                000012258889999999999999999999999999998  


Q ss_pred             HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh--------cccchhhHHHHHHHHHHH
Q 008020          179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ--------DEVGRSWGYGICSICMFT  227 (581)
Q Consensus       179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~f~i~~~~~~~  227 (581)
                          |++..+....+..+|..++..+...+.        ..+|||++|++.++..++
T Consensus       159 ----rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        159 ----KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             ----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence                999998888888888888876666554        257999999987765443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.91  E-value=3.8e-21  Score=201.57  Aligned_cols=176  Identities=15%  Similarity=0.105  Sum_probs=147.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +++..+.+....+...++.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            3445555555556666666666665654 5678999999999999999999999999999999998 9999999999998


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++.+++..+.                        +.+.+++.|++.|++.+...+...+++.|.+|+++      |+++
T Consensus        81 ~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  130 (385)
T TIGR00710        81 ALSSLGLALSN------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRI  130 (385)
T ss_pred             HHHHHHHHHHc------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHH
Confidence            88888887762                        27788999999999999999999999999999888      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +++.+...++|..++|.+++++.+..+|++.|++..+..++..+....
T Consensus       131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998899999998777665555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=2.5e-22  Score=216.55  Aligned_cols=150  Identities=13%  Similarity=-0.020  Sum_probs=123.9

Q ss_pred             HHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcc
Q 008020           53 VTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDI  132 (581)
Q Consensus        53 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (581)
                      .+.+.+++|++.++.+++.+.+.+++.++++++|+++||+ |||+++..+.++..++..+.+.....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            4467789999999999999999999999999999999999 99999988887777766655442000             


Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 008020          133 TKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV  212 (581)
Q Consensus       133 ~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  212 (581)
                            ...+.+.+++.|++.|++.+...|....+++|++|+++      |+++++++..+.++|..+++.+..++.+..
T Consensus       118 ------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~  185 (467)
T PRK09556        118 ------GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYF  185 (467)
T ss_pred             ------ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhh
Confidence                  00248889999999999999999999999999999999      999999999999999999998887665543


Q ss_pred             ---chhhHHHHHHHHHHHH
Q 008020          213 ---GRSWGYGICSICMFTA  228 (581)
Q Consensus       213 ---g~~~~f~i~~~~~~~~  228 (581)
                         +|+..|.+.++..++.
T Consensus       186 ~~~~~~~~f~~~g~~~~~~  204 (467)
T PRK09556        186 FDGHVIGMFIFPSIIALII  204 (467)
T ss_pred             ccCcchhHHHHHHHHHHHH
Confidence               5888887766554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=2.2e-21  Score=203.66  Aligned_cols=172  Identities=7%  Similarity=0.094  Sum_probs=150.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++.++.+.+..++.....+...+.+|. +++++|++.++.+++.+.+.++..++++++|+++||+ |||+++..+.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            356778888888888888877777765 5678999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.++++++.                        +.+.+++.|++.|++.+...+....++.|.+++++      |++++
T Consensus        80 ~~~~l~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  129 (382)
T PRK10091         80 IGNAMFTLSS------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV  129 (382)
T ss_pred             HHHHHHHHhC------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence            9998888772                        28889999999999999988888888999998887      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +....+..+|..++|.+++++.+..+||++|++.++..++..+.
T Consensus       130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            99988999999999999999988899999999877665554443

>TIGR00898 2A0119 cation transport protein

Probab=99.90  E-value=1.8e-21  Score=212.02  Aligned_cols=387  Identities=18%  Similarity=0.149  Sum_probs=229.2

Q ss_pred             HHhccccCCC---hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           54 TYLGGTMHLP---SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        54 ~yl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ..+.++++++   ..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++.+++   +          
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---~----------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---P----------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---c----------
Confidence            3467789998   89999999999999999999999999998 99999999999999888888776   2          


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                                 +++.+++.|++.|++.++..+...+++.|.+|+++      |+++.++......+|.+++|.+++.+.+
T Consensus       179 -----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       179 -----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             -----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                       28889999999999999999999999999999998      9999999988899999999988876653


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCccc
Q 008020          211 EVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQF  290 (581)
Q Consensus       211 ~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  290 (581)
                         ||+.|++.++..++..+..++..+..+....+++ ..+..+.+....+..+.+.++..   .+.         ..  
T Consensus       242 ---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~---~~~---------~~--  303 (505)
T TIGR00898       242 ---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKINGKKLPAEV---LSL---------SL--  303 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHH---Hhh---------hh--
Confidence               9999988777666555544443322111111111 11112222222111111111000   000         00  


Q ss_pred             chhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccc
Q 008020          291 RCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKI  369 (581)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (581)
                         ++. ...++        ....++ .++.+  ..++..+.....++...   ..+... ..+..   ..       +.
T Consensus       304 ---~~~-~~~~~--------~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~---~~-------~~  355 (505)
T TIGR00898       304 ---EKD-LSSSK--------KQYSFLDLFRTP--NLRKTTLCLMMLWFTTA---FSYYGL-VLDLG---NL-------GG  355 (505)
T ss_pred             ---hhh-hhhcc--------CCCcHHHHhCCh--HHHHHHHHHHHHHHHHH---HHHHHH-hcccc---cc-------CC
Confidence               000 00000        000000 00000  00111111111111111   111111 00100   00       11


Q ss_pred             cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee
Q 008020          370 PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPI  449 (581)
Q Consensus       370 ~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (581)
                      +.........+..+....+..++.+|+.||.          .+.++.++.+++++.+.+..                 ..
T Consensus       356 ~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~----------~~~~~~~~~~~~~l~~~~~~-----------------~~  408 (505)
T TIGR00898       356 NIYLDLFISGLVELPAKLITLLLIDRLGRRY----------TMAASLLLAGVALLLLLFVP-----------------VD  408 (505)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHcC-----------------CC
Confidence            1111122233333444444555555554442          25556666666655554431                 11


Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK  529 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~  529 (581)
                      ..+..+...++.+++....++..+.+..|.+|++.|++++|+.+....+|+.++|.+.+ +...                
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~----------------  471 (505)
T TIGR00898       409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK----------------  471 (505)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH----------------
Confidence            12333444455667777778889999999999999999999999999999999999887 3211                


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhccccccccC
Q 008020          530 GRLDCFYGLLAALSFINFGLFLLCASWYKRKKAK  563 (581)
Q Consensus       530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  563 (581)
                       +....+++++++.+++.++.+ +.+++++++++
T Consensus       472 -~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~  503 (505)
T TIGR00898       472 -WLFLPLVLFGGLALLAGILTL-FLPETKGVPLP  503 (505)
T ss_pred             -HHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCC
Confidence             112345666666666655544 44666665543

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=3.1e-21  Score=203.41  Aligned_cols=173  Identities=11%  Similarity=0.109  Sum_probs=144.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +++|..+...+..++.....+..-..+|. +.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            45667777777777777776666665655 5678999999999999999999999999999999999 999999999998


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++.++.                        +.+.+++.|+++|++.|...+...+++.|.+|+++      |++
T Consensus        82 ~~i~~~l~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~  131 (394)
T PRK03699         82 MILAVAGLMFSH------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS  131 (394)
T ss_pred             HHHHHHHHHHcc------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence            888888887762                        37788999999999999988999999999999888      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhh-cccchhhHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQ-DEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~-~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      +++..+...++|+.++|.+.+++. +..|||++|.+.++..++..+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            998888888899999998888765 457999999876665554443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=4.6e-21  Score=201.99  Aligned_cols=166  Identities=14%  Similarity=0.166  Sum_probs=137.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++.++...++..++...+...++.. .+++|.+..+.+++.+.+.+...++.+++|+++||+ |||+++.++.++..+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            456777888888887665555555544 568899999999999999999999999999999999 999999999999988


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.+++.++.                        +   .++.|+++|++.++..|+..+++.|.+|+++      |+++.+
T Consensus        81 ~~~~~~~~~------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~  127 (393)
T PRK11195         81 GCLLMLFGI------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANG  127 (393)
T ss_pred             HHHHHHHHH------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            887766541                        1   2678999999999999999999999999988      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      +.....++|..+||.++|++.+. .|+..+.+...+.+++.+
T Consensus       128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~  168 (393)
T PRK11195        128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL  168 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875 477776665554444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=5.3e-22  Score=213.09  Aligned_cols=150  Identities=11%  Similarity=0.032  Sum_probs=125.2

Q ss_pred             HHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccc
Q 008020           54 TYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT  133 (581)
Q Consensus        54 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (581)
                      +.+.+++|++.++.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++++.+               
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~---------------  106 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN---------------  106 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh---------------
Confidence            455679999999999999999999999999999999998 9999999999888888888877622               


Q ss_pred             cccCCchhhHHHHHH-HHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc
Q 008020          134 KCQHASGIQMGVLYI-SLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV  212 (581)
Q Consensus       134 ~~~~~~~~~~~~l~~-~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  212 (581)
                               .+.+++ .|++.|++.+...+...+++.+.++ ++      |+++.++.+.+.++|..++|.+++.+.+.+
T Consensus       107 ---------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       107 ---------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             ---------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence                     454544 5688899998776666778888885 56      999999999999999999999999999989


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHc
Q 008020          213 GRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       213 g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      |||++|++.+++.+++.+..++.
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998887766555444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.90  E-value=2.3e-22  Score=201.93  Aligned_cols=175  Identities=14%  Similarity=-0.016  Sum_probs=153.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVN---LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      |-.+-+++..++...++|.+.-+   ..+++.++.++|.+|.|.+.+++++++.++-.+.|.++||. +.|+.+-+++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLil  103 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHH
Confidence            33455666677777777766644   45688899999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      .++..+++.++.                        +...+.+...+.|..+|.-.|.+...++.++++++      ||+
T Consensus       104 sai~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~  153 (448)
T COG2271         104 SAIVNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGT  153 (448)
T ss_pred             HHHHHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCc
Confidence            999999999883                        38888999999999999999999999999999999      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHH--HHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVL--VYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~--~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ..++++.+-|+|+.+.|.+.  +++..+.+||..|++++++.++..++.++
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999  89998889999999999876655444433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.90  E-value=2.3e-21  Score=208.20  Aligned_cols=151  Identities=9%  Similarity=-0.023  Sum_probs=122.3

Q ss_pred             HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ...+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++.++++++....          
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~----------  117 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----------  117 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc----------
Confidence            344577777 99999999999999999999999999999999 999999999998888888777652100          


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhH-HHHHHHHHHhh
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGT-LMAVTVLVYIQ  209 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~i~~~~~~~l~  209 (581)
                                .+...+++.|++.|++.|...+.....+.|++|+++      |++++++++.+.++|+ .++|+++..+.
T Consensus       118 ----------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~  181 (452)
T PRK11273        118 ----------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMA  181 (452)
T ss_pred             ----------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                      136678889999999999988888888999999888      9999999999989886 45665543343


Q ss_pred             cccchhhHHHHHHHHHHHHH
Q 008020          210 DEVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       210 ~~~g~~~~f~i~~~~~~~~~  229 (581)
                      ...+||+.|++.+++.++..
T Consensus       182 ~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        182 WFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HhccHHHHHHHHHHHHHHHH
Confidence            34589999998776555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=5.2e-21  Score=206.25  Aligned_cols=147  Identities=10%  Similarity=0.108  Sum_probs=128.3

Q ss_pred             ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC
Q 008020           59 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA  138 (581)
Q Consensus        59 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (581)
                      +++++..+.+.+.+.+.++..++++++|+++||+ |||+++.++.++..++.+++.++..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999888888777654421                    


Q ss_pred             chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc-chhhH
Q 008020          139 SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV-GRSWG  217 (581)
Q Consensus       139 ~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~  217 (581)
                        .+...+++.|+++|++.+...|....++.|++|+++      |++++++.+.+.++|..++|.+++++.+.. ||++.
T Consensus       129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence              125678999999999999999999999999999998      999999999999999999999999998884 99999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008020          218 YGICSICMFTAILIFLS  234 (581)
Q Consensus       218 f~i~~~~~~~~~~~~~~  234 (581)
                      |++.++..++..++.+.
T Consensus       201 f~i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99887766555444443

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=1.4e-20  Score=199.05  Aligned_cols=171  Identities=13%  Similarity=0.036  Sum_probs=141.7

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      .+.||.+....++.++...+.+....++++++ +++|++..+.+.+.+.+.++..++.+++|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            35577888889999998888888888888888 57899999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..++.+++.......                    .+.+.+++.|.+.|+|.+...+...+.+.+.+|+++      |+
T Consensus        87 ~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g  140 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGH--------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS  140 (402)
T ss_pred             HHHHHHHHHHHHhccC--------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence            8888776553211100                    126777889999999988877777888889999888      99


Q ss_pred             hHHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHHHHH
Q 008020          185 YFFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGICSI  223 (581)
Q Consensus       185 ~~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i~~~  223 (581)
                      +++++.+...++|. .++|.+++++.+..||+..++....
T Consensus       141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            99999999999996 6899999998888887666554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.90  E-value=8.5e-22  Score=206.41  Aligned_cols=397  Identities=13%  Similarity=0.053  Sum_probs=239.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHH
Q 008020           68 ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLY  147 (581)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  147 (581)
                      +.+++++.++++++..+.|+++||+ |||..+.++.++..++.++..++...+.                     ..++.
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------------------~e~li  120 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPS---------------------FEMLI  120 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh---------------------HHHHH
Confidence            4567889999999999999999999 9999999999999998888877754443                     88999


Q ss_pred             HHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH--HhhcccchhhHHHHHHHHH
Q 008020          148 ISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV--YIQDEVGRSWGYGICSICM  225 (581)
Q Consensus       148 ~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~--~l~~~~g~~~~f~i~~~~~  225 (581)
                      ++|++.|+..|......+-++.|..|++.      ||..-.+...+.++|..++..++.  .+...-.|++.+.+..+..
T Consensus       121 ~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~  194 (485)
T KOG0569|consen  121 LGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA  194 (485)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999      999999999999999999966652  3334456999888888877


Q ss_pred             HHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCC
Q 008020          226 FTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYS  305 (581)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (581)
                      ++.++...++.+..+..-.++++..+..+.+..               ++..+++++.++..  .+..+..+..+++   
T Consensus       195 ~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~---------------y~G~~~~~~~~e~~--~~e~~~~~~~~~~---  254 (485)
T KOG0569|consen  195 LLQLALLPFLPESPKYLLIKKGDEEEARKALKF---------------YRGKEDVEAEIEEM--LREIEEEELEKKK---  254 (485)
T ss_pred             HHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHH---------------HhCCCcchhHHHHH--HHHHHHhcccccc---
Confidence            777766666543332211111111111111111               01111100000000  0000000000000   


Q ss_pred             CCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccc---hhhhhhhHHHH
Q 008020          306 EDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPA---ASLTVFFVAAI  382 (581)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  382 (581)
                           ....++.++++.  .|+.+...+.+.+.        +|+.+...... +...-+...+++.   .+.+....+..
T Consensus       255 -----~~sl~~~~~~~~--lR~~~~i~~~v~~~--------qq~sGi~ai~~-Yst~i~~~aG~~~~~a~~an~~~g~v~  318 (485)
T KOG0569|consen  255 -----QISLRQLLKNPT--LRRPLLIGIVVSFA--------QQFSGINAIFF-YSTSIFKTAGFTPEEAQYANLGIGIVN  318 (485)
T ss_pred             -----CCcHHHHhcCcc--hhHHHHHHHHHHHH--------HHhcCcceeHH-HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 011111112111  11222222212111        12211111100 0000000112222   23333334444


Q ss_pred             HHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee-hh-hHHHHHH
Q 008020          383 LITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISV-FY-LIPQFFL  460 (581)
Q Consensus       383 i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-li~~~~l  460 (581)
                      ++.......++++++||.          .++.+..++.+..+++..........           . +| .+ .+...++
T Consensus       319 ~~~t~~~~~lid~~gRRp----------Lll~~~~~~~~~~~~~~~~~~l~~~~-----------~-~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  319 LLSTLVSPFLIDRLGRRP----------LLLISLSLMAVALLLMSIALFLSNSF-----------G-SWLSYLCIAAIFL  376 (485)
T ss_pred             HHHHHHHHHHHHhcCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHh-----------h-hHHHHHHHHHHHH
Confidence            555555556666666552          25666666666665554432211000           1 11 12 2333344


Q ss_pred             HHHHHH-HHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHH
Q 008020          461 VGSGEG-FMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLL  539 (581)
Q Consensus       461 ~g~~~~-~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~  539 (581)
                      +.+++. ...|..+-+.+|.+|++.|+.++++..+++++.+++.....+.+.+..+                 ..+|+++
T Consensus       377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF  439 (485)
T KOG0569|consen  377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILF  439 (485)
T ss_pred             HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHH
Confidence            444444 4469999999999999999999999999999999999999988765442                 2468888


Q ss_pred             HHHHHHHHHHHHhhhccccccccCCchh
Q 008020          540 AALSFINFGLFLLCASWYKRKKAKQVPE  567 (581)
Q Consensus       540 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~  567 (581)
                      ++.+++..+..+++.||+|+|+.+++.+
T Consensus       440 ~i~~~~~~i~~~~~lPETkgr~~~eI~~  467 (485)
T KOG0569|consen  440 VIPLAIFLIYLYRYLPETKGRTPYEIIE  467 (485)
T ss_pred             HHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence            9999999999999999999998877654

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.90  E-value=4.3e-21  Score=201.46  Aligned_cols=157  Identities=13%  Similarity=0.159  Sum_probs=138.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .|.++.++...++..+....+.+.+|.|+. ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            457888999999999999888899998877 6799999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++..+++++.                        +.+.++++|++.|++.+...+...+.+.+..++++      |++++
T Consensus        83 ~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  132 (381)
T PRK03633         83 AGCAGLGLMV------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLL  132 (381)
T ss_pred             HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            8888877762                        37889999999999999988888888888888877      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhh
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSW  216 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~  216 (581)
                      +++....++|..+||.+++.+.+...+..
T Consensus       133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  161 (381)
T PRK03633        133 AAYMMVYYLGTVLGQLLVSKVSTELMSVL  161 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccchH
Confidence            99999999999999999999876543333

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=2.4e-21  Score=203.54  Aligned_cols=171  Identities=17%  Similarity=0.153  Sum_probs=141.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +++......+..++.....+... ...+++.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            34444545555555555554444 344566678999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++.+++.++.                        +.+.+++.+++.|++.+...+...+++.|.+|+++      |+++
T Consensus        93 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~  142 (398)
T TIGR00895        93 SVFTLLCALAT------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA  142 (398)
T ss_pred             HHHHHHHHHcc------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence            88887776652                        26778899999999999999999999999999888      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~  229 (581)
                      +++.....++|..+++.+++++.+..||++.|++.++..++..
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  185 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLL  185 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHH
Confidence            9999999999999999999999998999999988754444333

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.90  E-value=1.5e-20  Score=199.38  Aligned_cols=148  Identities=12%  Similarity=0.082  Sum_probs=130.2

Q ss_pred             hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 008020           56 LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC  135 (581)
Q Consensus        56 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (581)
                      +.+++|.+..+.++..+.+.++..++++++|+++||+ |||+++..+.++..++.+++.++.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999998 999999999999999988888762                  


Q ss_pred             cCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchh
Q 008020          136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRS  215 (581)
Q Consensus       136 ~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~  215 (581)
                            +.+.++++|+++|++.+...+....++.|.+++++      |++.+++.....++|..+||.+++++.++.|||
T Consensus       103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403        103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence                  27889999999999988766777788899999888      999999999999999999999999998888999


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 008020          216 WGYGICSICMFTAILIFLS  234 (581)
Q Consensus       216 ~~f~i~~~~~~~~~~~~~~  234 (581)
                      +.|++.++..+++.+..++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999887766665544333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=3.1e-21  Score=209.68  Aligned_cols=168  Identities=17%  Similarity=0.187  Sum_probs=145.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      .+++.+..+.+..+...+........+ +++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            445666677777777777666555545 456778999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++.++.                        +.+.++++|++.|++.++..+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  144 (496)
T PRK03893         95 FSVGTLACGFAP------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNK  144 (496)
T ss_pred             HHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            999888887762                        37889999999999999999999999999999988      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICM  225 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~  225 (581)
                      ++++.....++|..++|.+.+++.+.++|++.|++..+..
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998754443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1.5e-20  Score=198.11  Aligned_cols=173  Identities=11%  Similarity=0.074  Sum_probs=126.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH-HHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIA-IFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~  106 (581)
                      ...+..++..++..++...+.+.++.|+++++|++.++.+.+.+...+ +..++++++|+ +||+ ||||.++ .+.+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~   92 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG   92 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence            456778888999999999999999999999999999999999876655 55555655555 9999 9988754 555555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH--h
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM--A  184 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r--~  184 (581)
                      .++..+.+++.                        +.+.+++.+.+.+...+...|....+..|..+++.      |  +
T Consensus        93 ~~~~~~~~~~~------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  142 (393)
T PRK15011         93 VLACTLFAWNR------------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAV  142 (393)
T ss_pred             HHHHHHHHHhh------------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHH
Confidence            55555555552                        25555444444433344567777787888766554      4  3


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ...++.+...++|..+||.+++++.++.|||..|++.++..++..+...
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~  191 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW  191 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            4456788889999999999999999889999999887765555444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.89  E-value=1.7e-20  Score=197.79  Aligned_cols=172  Identities=14%  Similarity=0.081  Sum_probs=144.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +.+|..+.......+..+......+.+|.+ .+++|++..+.+++.+.+.++..++.+++|+++||+ |||+.+.++.+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            345666767777777777666666666554 568999999999999999999999999999999999 999999999998


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++..+.                        +.+.+++.|++.|++.+...+....+..|.+++++      +++
T Consensus        83 ~~~~~~~~~~~~------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (394)
T PRK11652         83 FILGTLVALFAH------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH  132 (394)
T ss_pred             HHHHHHHHHHHc------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence            888888777662                        27788999999999998888888888899888877      899


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~  229 (581)
                      +.++.+.+..+|..++|.+++++.+..||++.|++..+..++..
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~  176 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888899999988766544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=5.1e-21  Score=203.56  Aligned_cols=393  Identities=10%  Similarity=0.000  Sum_probs=226.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++.+|.+....++..+++..+.++++.|+++++|++..+.+.+.+.+.++..+++++.|+++||+ |||+++.++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            35678888899999998988999999999999999999999999999999999999999999998 99999988766555


Q ss_pred             HHHHHHHH-hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          108 FGTGLLAI-STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       108 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      ++...... ... +.                    .......+..+.++..+...+...+.+.++.++..    .+++..
T Consensus        88 ~~~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~  142 (420)
T PRK09528         88 VLFGPFFIYVFA-PL--------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFE  142 (420)
T ss_pred             HHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcccc
Confidence            44332211 100 00                    00011122222233333333333333333332111    116667


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVE  266 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (581)
                      ++......++|..++|.+++.+.+ .+|+.+|++.++..+++++..+...++.++++...++                  
T Consensus       143 ~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  203 (420)
T PRK09528        143 YGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA------------------  203 (420)
T ss_pred             chhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc------------------
Confidence            778788889999999999999876 5899999887766665555544433221111000000                  


Q ss_pred             cCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHH-HHHHHHHhh
Q 008020          267 LPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIW-ATTILFWST  345 (581)
Q Consensus       267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~  345 (581)
                       ++.               .++.....+....                         .+.+.++...... .....+...
T Consensus       204 -~~~---------------~~~~~~~~~~~~~-------------------------l~~~~~~~l~l~~~~~~~~~~~~  242 (420)
T PRK09528        204 -LGA---------------NASAVSLKDALAL-------------------------LKLPKFWFLVLYVIGVACFYDVF  242 (420)
T ss_pred             -hhc---------------ccccccHHHHHHH-------------------------ccCCCeEeehHHHHHHHHHHHHH
Confidence             000               0000000000000                         0001111111111 111111111


Q ss_pred             hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020          346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS  425 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~  425 (581)
                      ..+.+.++....  .+....  ....+.+..+..+...+..++.+++.+|+.+|+.          +..+.++.+++.+.
T Consensus       243 ~~~~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~----------~~~~~~l~~~~~~l  308 (420)
T PRK09528        243 DQQFPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA----------LLLAGTIMAVRIIG  308 (420)
T ss_pred             HHHHHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh----------hHHHHHHHHHHHHH
Confidence            112222111110  000000  0012233444555556667777777766655421          55666666666655


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHHHH
Q 008020          426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFFSS  504 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~g~  504 (581)
                      +++.                   .+.+.++...++.+++.+...+....++.+..|++.+++..++ +++...+|..+++
T Consensus       309 ~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~  369 (420)
T PRK09528        309 SGFA-------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS  369 (420)
T ss_pred             HHhc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence            5543                   1334556667778888888888888999999999999988766 6778889999999


Q ss_pred             HHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020          505 LLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       505 ~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  555 (581)
                      .+.|.+.+..                ++...|.+.+++.++..++.++..+
T Consensus       370 ~~~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        370 TLAGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence            9998775421                2355677777777666665555544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.89  E-value=2.6e-20  Score=198.95  Aligned_cols=172  Identities=13%  Similarity=0.046  Sum_probs=127.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHH-HHH-----HHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIV-TDF-----MGTSFLLCLLGGFLADSFLGRYRTIAI  101 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~-~~~-----~~~~~~~~~~~G~laD~~~Grr~~l~~  101 (581)
                      ++....+++..+++.+....+.. ..+.+.++++.+..+.+... +..     .+...+++++.|+++||+ |||+++..
T Consensus        14 ~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   91 (434)
T PRK15075         14 ARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIV   91 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHH
Confidence            44556666666777666665544 44577888998877755433 222     222246789999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020          102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~  181 (581)
                      +.++..++.++++++.+...                ........++++|+++|++.|...+....+++|.+|+++     
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~-----  150 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYAT----------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR-----  150 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHH----------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc-----
Confidence            99999999998887732110                000001257899999999999999999999999999999     


Q ss_pred             HHhhHHHHHHHHHHhhHHHHHHHHHHh--------hcccchhhHHHHHHH
Q 008020          182 QMAYFFSRFFFVISTGTLMAVTVLVYI--------QDEVGRSWGYGICSI  223 (581)
Q Consensus       182 ~r~~~~~~~~~~~~~g~~i~~~~~~~l--------~~~~g~~~~f~i~~~  223 (581)
                       |++++++.....++|..+++.+++.+        .+.+|||++|++..+
T Consensus       151 -rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 -KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence             99999998888888888887777665        246799999987543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=7.2e-20  Score=192.22  Aligned_cols=366  Identities=10%  Similarity=-0.010  Sum_probs=227.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH-HHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT-VQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~-~~~~  108 (581)
                      ..+.+....++...++-...+++|.|++ ++|++.++.+++.+.+.+...++++++|.++||+ ||++....... ...+
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l   82 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI   82 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence            3455667777777777778899999986 6899999999999999999999999999999998 98543322211 1111


Q ss_pred             HHH-HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          109 GTG-LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ..+ .+..+                        ++.+.+++.|.+++.+.+...|...++..+.  +++      |++.+
T Consensus        83 ~~~~~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~  130 (382)
T TIGR00902        83 FAAAFSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDY  130 (382)
T ss_pred             HHHHHHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCc
Confidence            111 22222                        2378888999999999888888888876543  344      88899


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVEL  267 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  267 (581)
                      +......++|..++|.+++++.+++||+..|++..+...+.++ .....++.+++++ +++ .                 
T Consensus       131 g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~-----------------  190 (382)
T TIGR00902       131 GKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDA-IPE-D-----------------  190 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCcc-ccc-c-----------------
Confidence            9999999999999999999999999999998876544332222 2222221100000 000 0                 


Q ss_pred             CCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhh
Q 008020          268 PSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTY  346 (581)
Q Consensus       268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~  346 (581)
                                    +    .                         ...+  ...+..+.|+++.... .++........+
T Consensus       191 --------------~----~-------------------------~~~~--~~~~~l~~~~~~~~l~~~~l~~~~~~~~~  225 (382)
T TIGR00902       191 --------------E----S-------------------------QGDS--AFIALLKNPMNLRFLAAVCLIQGAHAAYY  225 (382)
T ss_pred             --------------c----c-------------------------ccch--hHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence                          0    0                         0000  0001111122222221 122222222222


Q ss_pred             ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHH
Q 008020          347 AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASA  426 (581)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~  426 (581)
                      ...+ .+... .+.+      ....+.+..+..+..++...+.+++.    +|      .+.++.+.++.++..+....+
T Consensus       226 ~~~~-~~l~~-~g~s------~~~~g~l~~~~~~~~i~~~~~~~~l~----~r------~g~~~~l~~~~~~~~~~~~~~  287 (382)
T TIGR00902       226 GFSA-IYWQA-AGIS------ASATGLLWGIGVLAEIIIFAFSNKLF----QN------CSARDLLLISAIACVGRWAII  287 (382)
T ss_pred             HHHH-HHHHH-CCCC------HhHHHHHHHHHHHHHHHHHHHhHHHH----hh------CCHHHHHHHHHHHHHHHHHHH
Confidence            2211 11111 1111      11122333344444555555555444    33      234445777888888777666


Q ss_pred             HHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHH
Q 008020          427 SVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSL  505 (581)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~  505 (581)
                      +..+                   +.+.++...++.++.++...+....++.+. |++.|++++++++ ....+|..+++.
T Consensus       288 ~~~~-------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~  347 (382)
T TIGR00902       288 GAIE-------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTA  347 (382)
T ss_pred             HhHh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432                   335566667899999999999999999988 9999999999987 577899999999


Q ss_pred             HHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHH
Q 008020          506 LVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGL  549 (581)
Q Consensus       506 ~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~  549 (581)
                      +.|.+.+..                + ...|++.+++.++++++
T Consensus       348 ~~G~l~~~~----------------g-~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       348 FAGFIYPTL----------------G-AGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHhc----------------c-HHHHHHHHHHHHHHHHH
Confidence            998875321                1 23466777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=1.1e-19  Score=192.11  Aligned_cols=162  Identities=14%  Similarity=0.133  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      ..++...+.+.++. +++++|.+.++.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++.++.   
T Consensus        18 ~~~~~~~~~p~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---   92 (401)
T PRK11043         18 GFLATDMYLPAFKA-IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE---   92 (401)
T ss_pred             HHHHHHHHHhhHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc---
Confidence            33334334443433 5678999999999999999999999999999999998 999999999988888888777662   


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i  200 (581)
                                           +.+.+++.|++.|++.+...+...+++.|.+++++      +++.++..+...++|..+
T Consensus        93 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  145 (401)
T PRK11043         93 ---------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPAL  145 (401)
T ss_pred             ---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence                                 27788999999999988877888889999999887      888888888888899999


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          201 AVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +|.+++++.+..||++.|++..+..++..+..+.
T Consensus       146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999899999998777666555444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.88  E-value=1.2e-19  Score=189.91  Aligned_cols=157  Identities=14%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020           44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR  123 (581)
Q Consensus        44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      +...+.+.+|.+.+ ++|++..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++..+.      
T Consensus         6 ~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~------   77 (377)
T PRK11102          6 AIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ------   77 (377)
T ss_pred             HHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            33445577777664 6899999999999999999999999999999998 999999999999999888887762      


Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020          124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~  203 (581)
                                        +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++|.
T Consensus        78 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~  133 (377)
T PRK11102         78 ------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI  133 (377)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              27778999999999999999999999999999888      999999999999999999999


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          204 VLVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       204 ~~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      +++.+.+..+|++.|++..+..++..+..
T Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        134 IGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999988899999987766655544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.87  E-value=2.2e-20  Score=199.77  Aligned_cols=175  Identities=9%  Similarity=-0.026  Sum_probs=134.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++...+...+.......+...+ +++++ +|++.++.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAM-PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhh-HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHH
Confidence            33444444444433333334333 46665 599999999999999999999999999999999 9999999998888888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+++....+..                    .+...+++.|++.|++.|...+.....+.|.+|+++      |++++++
T Consensus       105 ~~~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~  158 (438)
T TIGR00712       105 MLLMGFVPWAT--------------------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSI  158 (438)
T ss_pred             HHHHhcccccc--------------------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHH
Confidence            87765542110                    135667888999999999988888899999999999      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHH-hhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVY-IQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~-l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ++...++|+.+++.+.+. +.+..+||..|++.++..++..+..+
T Consensus       159 ~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~  203 (438)
T TIGR00712       159 WNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAF  203 (438)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877665 44456899999987776655443333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=1.6e-19  Score=194.62  Aligned_cols=359  Identities=14%  Similarity=0.119  Sum_probs=235.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+..+.+..+..+++......-++-++. ++.-|+...+.+..+..+...+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            35566667777777777666655655554 4456888999999999999999999999999999 999999999887776


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ..+.+++......                   .+.+.+++..++.|++.+...|+.++++.|.+|+++      ..++.+
T Consensus        88 ~~~~L~~l~~~~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a  142 (524)
T PF05977_consen   88 VALLLAVLAFFGL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA  142 (524)
T ss_pred             HHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence            6554443322222                   247888999999999999999999999999999998      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccC
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELP  268 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  268 (581)
                      +.....|+...+||.++|.+....|-.++|.+.+++.++.+..+...+++.+.+   ..+.+...+.+...++       
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~---~~~~e~~~~~l~~G~r-------  212 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPS---SLPRERFFSALREGLR-------  212 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc---ccchhhhhhhHHHHHH-------
Confidence            999999999999999999998888999999998888777665554443321111   1111111100000000       


Q ss_pred             CCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          269 SSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQ  348 (581)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  348 (581)
                                             +                         ....  ...+..+.   ..+....+...+..
T Consensus       213 -----------------------y-------------------------v~~~--~~l~~~l~---~~~~~~l~~~a~~a  239 (524)
T PF05977_consen  213 -----------------------Y-------------------------VRSS--PPLRSVLL---RSFLFNLFASAVWA  239 (524)
T ss_pred             -----------------------H-------------------------Hhcc--hHHHHHHH---HHHHHHHhhhHHHH
Confidence                                   0                         0000  01111111   11111111111111


Q ss_pred             ccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008020          349 MITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV  428 (581)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~  428 (581)
                      ....+..+  ..+..    ....+.+....+++.++.+.+..++     +++     .+..+.+..+.++.+++++.+++
T Consensus       240 LlPl~a~~--~l~~~----a~~yGll~a~~gvGai~Gal~~~~l-----~~~-----~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  240 LLPLFARD--VLGGG----ASGYGLLLAAFGVGAILGALLLPRL-----RRR-----LSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             hhhHHHHH--HhCCc----HHHHHHHHHHHHHHHHHHHHHHHHh-----hcc-----cCcchhhHHHHHHHHHHHHHHhc
Confidence            11111111  11111    1112334444555555555544433     221     22223355666666666666655


Q ss_pred             HHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHH
Q 008020          429 VEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVS  508 (581)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~  508 (581)
                      .                   .+.+..++.+++.|++.....+..++.+++.+|+++||+.++++++....+..+|..+.|
T Consensus       304 ~-------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G  364 (524)
T PF05977_consen  304 S-------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG  364 (524)
T ss_pred             c-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4                   233455667788899999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 008020          509 IVKA  512 (581)
Q Consensus       509 ~i~~  512 (581)
                      .+.+
T Consensus       365 ~la~  368 (524)
T PF05977_consen  365 FLAD  368 (524)
T ss_pred             HHHH
Confidence            8754

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.87  E-value=2.6e-22  Score=209.76  Aligned_cols=365  Identities=36%  Similarity=0.563  Sum_probs=233.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020           96 YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK  175 (581)
Q Consensus        96 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~  175 (581)
                      .|+++++.+++++|.+++.++...+.               .+++.+...++++..++++|.|+..|++.++++|+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~---------------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPS---------------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSS---------------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcch---------------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            37889999999999999777744222               123345678999999999999999999999999999987


Q ss_pred             -ChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccccccc-CCCCChhHH-H
Q 008020          176 -DEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYK-KCSGSPIVH-I  252 (581)
Q Consensus       176 -~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~  252 (581)
                       +++    |.+++++++++.|+|..+++.+.++++++.||.+.|.++.+..+++++.++..+++++++ ++.+++... .
T Consensus        66 ~~~~----~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~  141 (372)
T PF00854_consen   66 DDSR----RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI  141 (372)
T ss_dssp             TTTH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred             chhh----hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence             433    999999999999999999999999999999999999999999999999999998888776 555555554 3


Q ss_pred             HHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCc-ccCcchhHhHHHHHH
Q 008020          253 CQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWT-LCPVTRVEEVKMVIR  331 (581)
Q Consensus       253 ~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  331 (581)
                      ..++....+++....|....++...................+ .......        ....|+ .++.+++++.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~k~~~~  212 (372)
T PF00854_consen  142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIR-AAVIFFP--------EIFFWALFCQVQRVEELKALIR  212 (372)
T ss_dssp             HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHHCC--------CHHHHTTTSSTTTHHHCCHHHC
T ss_pred             HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhcc-chhhhhh--------hhhhcccCCccceeeeeeeeee
Confidence            444444455444444432222211100000000000000000 0000000        000010 013344555666666


Q ss_pred             HHHHHHHHHHHHhhhccccceeeeecccccccccc-ccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhH
Q 008020          332 LLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN-FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQ  410 (581)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~  410 (581)
                      .+..+.+...++..+.+...+...+....+....+ +.+|+..+++++.+.++++.|+.+++++|+.++..   .++...
T Consensus       213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~---~~~~~~  289 (372)
T PF00854_consen  213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI---QPSPPQ  289 (372)
T ss_dssp             HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---------HH
T ss_pred             ccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc---cchhhh
Confidence            66666667777777777666666666666666667 89999999999999999999999999999988322   578888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHH
Q 008020          411 LIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTG  490 (581)
Q Consensus       411 ~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g  490 (581)
                      ++.+|+++..++++.....+..+......++      ..+.++.+..+++..+++-+..+...+...|.+|++..+..+|
T Consensus       290 k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~  363 (372)
T PF00854_consen  290 KFGIGMVFAILAMFVAAIVEIRRLCYAQPCG------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMG  363 (372)
T ss_dssp             HHHHH-HHHHHHHHTTTHHHH---HH----T------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhcccccC------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHH
Confidence            9999999999998887777654433333322      3444677799999999999999999998888888888888888


Q ss_pred             HHHHHHh
Q 008020          491 LFLTTLS  497 (581)
Q Consensus       491 i~~~~~~  497 (581)
                      +++....
T Consensus       364 ~~~~~~~  370 (372)
T PF00854_consen  364 IWFALSA  370 (372)
T ss_dssp             HHHHHH-
T ss_pred             HHHHHhc
Confidence            7776543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=9e-21  Score=197.65  Aligned_cols=149  Identities=15%  Similarity=0.080  Sum_probs=131.4

Q ss_pred             HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020           52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD  131 (581)
Q Consensus        52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (581)
                      ..+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.              
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------   81 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------------   81 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence            34467889999999999999999999999999999999999 999999999999999998888772              


Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHH-HHHHHhhc
Q 008020          132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAV-TVLVYIQD  210 (581)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~-~~~~~l~~  210 (581)
                                +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+...++|..++| ++++.+.+
T Consensus        82 ----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  145 (379)
T TIGR00881        82 ----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAE  145 (379)
T ss_pred             ----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHh
Confidence                      37889999999999999999999999999999988      99999999999999999999 57777777


Q ss_pred             ccchhhHHHHHHHHHHHHHHH
Q 008020          211 EVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       211 ~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      ..+|++.|++.+++.++..+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~  166 (379)
T TIGR00881       146 LYSWHWVFIVPGIIAIIVSLI  166 (379)
T ss_pred             cCCchhHHHHHHHHHHHHHHH
Confidence            889999998777655544333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=3.1e-19  Score=188.09  Aligned_cols=169  Identities=13%  Similarity=0.072  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~  110 (581)
                      +.+.....+....+.....+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          5 LLCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence            344555555566666666666655 4567999999999999999999999999999999998 99999999999988888


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      +++..+.                        +.+.+++.|+++|++.+...+...+++.|.+|+++      |+++.++.
T Consensus        83 ~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~  132 (392)
T PRK10473         83 LLCSLAE------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLL  132 (392)
T ss_pred             HHHHHhC------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence            8877652                        26778899999999999988999999999999988      99999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +...++|..++|.+++.+.+..||++.|++..+..++..+.
T Consensus       133 ~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        133 NGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888889999998777655544443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=6.8e-20  Score=199.73  Aligned_cols=405  Identities=14%  Similarity=0.107  Sum_probs=235.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHH
Q 008020           66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGV  145 (581)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (581)
                      +.+++.+...++..++.+++|+++|++ |||++++++.+.+.+|.++++++.                        +...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~~  144 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWYQ  144 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHHH
Confidence            458999999999999999999999998 999999999999999999999983                        3889


Q ss_pred             HHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHH
Q 008020          146 LYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSIC  224 (581)
Q Consensus       146 l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~  224 (581)
                      ++++|++.|+|.|+....++.+++|..|++.      |+...+..+...++|..++..++....+. .+||..+.+..+.
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999998      99999999999999999996555444332 4899888877776


Q ss_pred             HHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCC
Q 008020          225 MFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDY  304 (581)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (581)
                      .++..+..++..+..+..-..+ ...+..+.+.......    +++....               ..... .....+...
T Consensus       219 ~~~~~~~~~~~pesp~~L~~~g-~~~~a~~~l~~l~g~~----~~~~~~~---------------~~~~~-~~~~~~~~~  277 (513)
T KOG0254|consen  219 AVILALGMLFLPESPRWLIEKG-RLEEAKRSLKRLRGLS----PEDVEVE---------------LELLK-IKLLVEAEV  277 (513)
T ss_pred             HHHHHHHHHhCCCChHHHHHcC-ChHHHHHHHHHHhCCC----CcchHHH---------------HHHHH-HHHHHhhhc
Confidence            6655555333222111111111 1111111221111100    0000000               00000 000000000


Q ss_pred             CCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHH
Q 008020          305 SEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILI  384 (581)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  384 (581)
                      .+    ....|+.+..  ...+|+......+..++..     ........+. ... .+..+...+......+..+..++
T Consensus       278 ~~----~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~-----tG~~~~~~Y~-~~i-f~~~g~~~~~~~~~~~~~~v~~~  344 (513)
T KOG0254|consen  278 AE----GKASWGELFS--PKVRKRLIIGLLLQLFQQL-----TGINYVFYYS-TTI-FKSAGLKSDTFLASIILGVVNFL  344 (513)
T ss_pred             cc----ccccHHHhcC--cchHHHHHHHHHHHHHHHH-----hCCceEEeeh-HHH-HHhcCCCCchHHHHHHHHHHHHH
Confidence            00    0001111111  1122222222211111111     1111111111 111 01011111112222222333333


Q ss_pred             HHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHH
Q 008020          385 TLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSG  464 (581)
Q Consensus       385 ~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~  464 (581)
                      ...+...++||++||.          .+..|...+.+++++++.......+...      ......+..++..+++....
T Consensus       345 ~t~~~~~lvd~~gRr~----------lll~s~~~m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~f  408 (513)
T KOG0254|consen  345 GTLVATYLVDRFGRRK----------LLLFGAAGMSICLVILAVVGVFALYYPN------SSKGAGWLAIVFLCLFIFSF  408 (513)
T ss_pred             HHHHHHHHHHHhccHH----------HHHHhHHHHHHHHHHHHHHHHHhccCCC------cccchhHHHHHHHHHHHHHH
Confidence            3333345666665553          3778888888888877765332100000      00012223333344445555


Q ss_pred             HHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHH
Q 008020          465 EGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSF  544 (581)
Q Consensus       465 ~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~  544 (581)
                      .....|..|.+..|.+|.+.|+++.++....+++.+.+-......+....                +....|+.+++.+.
T Consensus       409 ~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  409 AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYFGGICL  472 (513)
T ss_pred             hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHHHHHHH
Confidence            55666888999999999999999999999999998888776666543211                01234666667777


Q ss_pred             HHHH-HHHhhhccccccccCCchh
Q 008020          545 INFG-LFLLCASWYKRKKAKQVPE  567 (581)
Q Consensus       545 i~~~-~~~~~~~~~~~~~~~~~~~  567 (581)
                      +... +.+++.+|+|+++.|+.++
T Consensus       473 ~~~~~fv~~~~pETkg~sleei~~  496 (513)
T KOG0254|consen  473 LSLIIFVFFFVPETKGLTLEEINE  496 (513)
T ss_pred             HHHHHHheEEcccCCCCcHHHHHH
Confidence            7766 7889999999999988765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=2.8e-19  Score=191.08  Aligned_cols=355  Identities=13%  Similarity=0.082  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHHHHHHHH
Q 008020           38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYR-TIAIFATVQTFGTGLL  113 (581)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~l~~~~~~~~~~~~~~  113 (581)
                      .+..+.....+..+++.|+++++|+++.+.+.+.++..+...+..|+.|+++||.   +|||| .++++.....++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3455666667778899999999999999999999999999999999999999983   28755 5667777777777766


Q ss_pred             HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHHHHHH
Q 008020          114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~  192 (581)
                      ......+                  .......+++.+++.+++.+...+...++..|..++ ++      |+++.++.+.
T Consensus        88 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~  143 (437)
T TIGR00792        88 FTTPDFS------------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRF  143 (437)
T ss_pred             HhCCCCC------------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHH
Confidence            6542111                  112345667777888888888888888999998754 44      8999999888


Q ss_pred             HHHhhHHHHHHHHHHhh-------cccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          193 VISTGTLMAVTVLVYIQ-------DEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~-------~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      ..++|..+++.+.+.+.       +..+|++.+.+.+++.++..++.+...++.+.+.+..++                 
T Consensus       144 ~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-----------------  206 (437)
T TIGR00792       144 GATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-----------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-----------------
Confidence            88888877766655443       245899888777666555444433322211100000000                 


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST  345 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  345 (581)
                                            +.....+                   .+     +...+.|.+.......+.....+..
T Consensus       207 ----------------------~~~~~~~-------------------~~-----~~l~~~~~~~~~~~~~~~~~~~~~~  240 (437)
T TIGR00792       207 ----------------------KKLSLKQ-------------------IF-----KALFKNDQLLILCLAYLFYNLAFNI  240 (437)
T ss_pred             ----------------------cCCCHHH-------------------HH-----HHHhCCHHHHHHHHHHHHHHHHHHH
Confidence                                  0000000                   00     0001112222222221111111112


Q ss_pred             hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020          346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS  425 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~  425 (581)
                      ......++...... +      ....+.+.....+..++..++.+++.+|+.+|          +.+..+.++.+++++.
T Consensus       241 ~~~~~~~~~~~~~~-~------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~----------~~~~~~~~~~~~~~~~  303 (437)
T TIGR00792       241 KNGVQVYYFTYVLG-D------PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK----------ILFAGGILLMVLGYLI  303 (437)
T ss_pred             HcchhheeEeeecC-C------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHH
Confidence            22122222221111 0      11122333444566667777777776554433          2255666666666554


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHHHHhH
Q 008020          426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLTTLSL  498 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~l  498 (581)
                      +.+..                  .+.+.+++..++.+++.+...+..++++.|..|       ++.+|.++|++++...+
T Consensus       304 ~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~  365 (437)
T TIGR00792       304 FFFAG------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKL  365 (437)
T ss_pred             HHHcc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHH
Confidence            44321                  122334555677888888888999999888865       56789999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 008020          499 GFFFSSLLVSIVKAAT  514 (581)
Q Consensus       499 g~~~g~~~~~~i~~~~  514 (581)
                      |..+++.+.+.+.+..
T Consensus       366 g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       366 GQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999887654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=1.9e-19  Score=189.91  Aligned_cols=389  Identities=9%  Similarity=0.022  Sum_probs=230.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+|......++...++..+.++++.|+++++|++..+.+++.+.+.+...+++++.|+++||+ |||+.++.+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4578888889999999999999999999999999999999999999999999999999999999 999999887766555


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..........+.                ........+++.+++.+++.+...+....+..|..+  +      ++..++
T Consensus        81 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g  136 (396)
T TIGR00882        81 LFAPFFIYVFGPL----------------LQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYG  136 (396)
T ss_pred             HHHHHHHHHhhhH----------------HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccc
Confidence            4433211100000                000113345667888888888888888777766432  2      334566


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccC
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELP  268 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  268 (581)
                      ......++|..+||.+++.+.+ .+|+.+|++.+++.++..+..+...++.+++    +....          .  .+ +
T Consensus       137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------~--~~-~  198 (396)
T TIGR00882       137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS----ATVAN----------A--LG-A  198 (396)
T ss_pred             hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh----hhhhc----------c--cc-c
Confidence            6677788999999999998865 5999999987766665544433322221110    00000          0  00 0


Q ss_pred             CCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh-c
Q 008020          269 SSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY-A  347 (581)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~  347 (581)
                      +                 .+..+.                    .+.     .+..+.|.++......+.....+... .
T Consensus       199 ~-----------------~~~~~~--------------------~~~-----~~~l~~~~~~~~~l~~~~~~~~~~~~~~  236 (396)
T TIGR00882       199 N-----------------ASAFSL--------------------KLA-----LELFRQRKFWMFVLYVVGVACVYDVFDQ  236 (396)
T ss_pred             c-----------------cCCCCH--------------------HHH-----HHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            0                 000000                    000     00000111212211111111111111 1


Q ss_pred             cccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH
Q 008020          348 QMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS  427 (581)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~  427 (581)
                      +.+.++..........    ....+....+..+...+.....+++.+|..+|+          .+.++.++.+++.....
T Consensus       237 ~~~~y~~~~~~~~~~~----~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~----------~l~~~~~l~~l~~~~~~  302 (396)
T TIGR00882       237 QFANFFTSFFATPQQG----TRVFGYVTTMGELLNALIMFCAPLIINRIGAKN----------ALLIAGTIMSVRIIGSS  302 (396)
T ss_pred             HHHHHHHHhccccccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------hHHHHHHHHHHHHHHHH
Confidence            1111111100000000    001122334444445555555566655544442          25566666666554433


Q ss_pred             HHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHHHHHH
Q 008020          428 VVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFFSSLL  506 (581)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~g~~~  506 (581)
                      ..                   .+.+++++..++.+++..........+..+..|++.+++..+. ++....+|+.+++.+
T Consensus       303 ~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l  363 (396)
T TIGR00882       303 FA-------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTL  363 (396)
T ss_pred             hc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHh
Confidence            22                   2344555667778888777777777888889999999987776 678899999999999


Q ss_pred             HHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 008020          507 VSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFL  551 (581)
Q Consensus       507 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~  551 (581)
                      .|.+.+..                ++...|.+.+++.++..++..
T Consensus       364 ~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       364 AGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            98775321                235667777777666655443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=2.8e-19  Score=189.81  Aligned_cols=389  Identities=12%  Similarity=0.060  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-hHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR-YRTIAIFATVQTFGT  110 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-r~~l~~~~~~~~~~~  110 (581)
                      ..+.+..++...++-.+.++++.|+++++|++..|.|++.+.+.++..++++++|+++||+ || |+++.++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3456667777777777889999999999999999999999999999999999999999998 65 778888877776766


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcc--------cCCCCCChHHHhH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGT--------DQFDEKDEKEKTQ  182 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~--------~~~~~~~~~~~~~  182 (581)
                      .+..+..                        +.+.+++.|++.+++.+...+...+...        |......      
T Consensus        84 ~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------  133 (418)
T TIGR00889        84 FFAAQVT------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------  133 (418)
T ss_pred             HHHHHhc------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------
Confidence            6666552                        2666778888888887766666555432        2222223      


Q ss_pred             HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCC-ChhHHHHHHHHHHHh
Q 008020          183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSG-SPIVHICQVVVAARK  261 (581)
Q Consensus       183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  261 (581)
                      |.+.++      .+|..+||.+++.+.....|. +|++.++..++..++.+. .++.++.++++ ......         
T Consensus       134 ~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~---------  196 (418)
T TIGR00889       134 PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAKMSIKVM---------  196 (418)
T ss_pred             Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccccCHHHH---------
Confidence            445444      468888998888874433344 455555444444433222 22211100000 000000         


Q ss_pred             hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHH
Q 008020          262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTI  340 (581)
Q Consensus       262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~  340 (581)
                                                ...+.   ....                        ++ +++...... ++...
T Consensus       197 --------------------------~~~~~---~~~~------------------------k~-~~~~~~~~~~~~~~~  222 (418)
T TIGR00889       197 --------------------------LGLDA---FILF------------------------KN-KRMAIFFFFSMLLGA  222 (418)
T ss_pred             --------------------------hhhhH---HHHh------------------------cC-CCeeeHHHHHHHHHh
Confidence                                      00000   0000                        00 111111111 11111


Q ss_pred             HHHhhhccccceeeeeccccccccc-ccc-ccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH
Q 008020          341 LFWSTYAQMITFSVEQATTMQRSIG-NFK-IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL  418 (581)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l  418 (581)
                      .....+... ..+... .+.+.... ++. -..+....+..+..++...+.+++.+|+.+|          +.+..+.++
T Consensus       223 ~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r----------~~l~~~~~~  290 (418)
T TIGR00889       223 PLQITNIFG-NGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK----------KVMLLSLVA  290 (418)
T ss_pred             HHHHHHHhH-HHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHH
Confidence            111111111 111110 00000000 000 0123344455556666666666666555444          236667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHh
Q 008020          419 SALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLS  497 (581)
Q Consensus       419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~  497 (581)
                      .++++..+......               ..+.+.+++..++.+++++...+....++.|.+|++.||+++|+.+ ..+.
T Consensus       291 ~~v~~~l~~~~~~~---------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~  355 (418)
T TIGR00889       291 WALRFGFFAYGDPE---------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNG  355 (418)
T ss_pred             HHHHHHHHHHcCcc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence            66665555432100               0112334556678889998888999999999999999999999997 6788


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          498 LGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR  559 (581)
Q Consensus       498 lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~  559 (581)
                      +|..+|+.+.|.+.+..+...          ..++...|++.+++.++..+.++++.++.++
T Consensus       356 lg~~iGp~l~G~l~~~~g~~~----------~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       356 FGSLLGYILSGVMVEKMFAYG----------TFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             hHHHHHHHHHHHHHHHhcccc----------CCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999998765432110          0123567777888877877777777665433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=4.7e-19  Score=189.11  Aligned_cols=154  Identities=17%  Similarity=0.139  Sum_probs=126.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +...+..+.+..+...+........+|. +++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            3445666666667777776666665655 5889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      +++.+++..+...+                     ++..++++|+++|+|.|...+..++++.|..++++      |.+.
T Consensus       102 ~~~~~l~~~~~~a~---------------------~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~  154 (438)
T PRK10133        102 ALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR  154 (438)
T ss_pred             HHHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHH
Confidence            99998764221112                     37889999999999999999999999998766655      6667


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhh
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQ  209 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~  209 (581)
                      ++.......+|..+||.+++.+.
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999998876543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=2.5e-19  Score=188.67  Aligned_cols=178  Identities=12%  Similarity=0.010  Sum_probs=129.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhc-cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLG-GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |.++...+..+.. +......+.+...+. +++|+|.+|.+++.+++.+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~s~~~f~~~-F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLA-FCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            5555554444444 444444444555554 48999999999999999999999999999999999 99999999999988


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      +.+++.+++...                   ..+++..+++.|++.|++ |...+.....+++++|+++      ||+++
T Consensus       112 i~~~~~~~a~~~-------------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~  165 (462)
T PRK15034        112 IPCVWLGIAVQN-------------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL  165 (462)
T ss_pred             HHHHHHHHHHcc-------------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence            888877765110                   012488899999999998 6678889999999999999      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhh-----c-------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQ-----D-------------EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~-----~-------------~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ++.....++|..+++.+.+.+.     .             ..+|+.++++-.+..+++.++.++
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987666777766555543322     1             234666666555555454444444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.86  E-value=5.1e-19  Score=211.59  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=124.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +.+...+++.++..+...+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            455556666666666665555555556655555544  3468888999999999999999999999 9999999988776


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      +++.++..++...+                     +.+.++++|+++|++.+...+...+++.|.+|+++      |+++
T Consensus        88 ~~~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  140 (1146)
T PRK08633         88 VGLTLLIVLAYYLG---------------------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRA  140 (1146)
T ss_pred             HHHHHHHHHHHHHc---------------------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhh
Confidence            66665544432212                     27889999999999999999999999999999998      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDE  211 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~  211 (581)
                      +++...+.++|.++|+.+++++.+.
T Consensus       141 ~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        141 NGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999998765

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.86  E-value=5.7e-20  Score=191.44  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=135.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++...+..+......+...+.+|.++++++|++..+.+++.+.+.++..++++++|+++||+ |||+.+.++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456777788888888888888888889999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++++++..                       +.+.+++.|+++|++.+. .+...++++|.+|+++      |+++.++
T Consensus        81 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~  130 (366)
T TIGR00886        81 CLWAGLAVQ-----------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGL  130 (366)
T ss_pred             HHHHHHHhh-----------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHH
Confidence            888877720                       378889999999999664 4567889999999988      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhc----------ccchhhHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQD----------EVGRSWGYG  219 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~----------~~g~~~~f~  219 (581)
                      .....++|..+++.+++.+..          ..+|++.|+
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~  170 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV  170 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence            888888888888777766543          347999984

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=6.7e-20  Score=194.23  Aligned_cols=376  Identities=15%  Similarity=0.124  Sum_probs=240.3

Q ss_pred             ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC
Q 008020           59 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA  138 (581)
Q Consensus        59 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (581)
                      .++++..+.+++.+.+..+..++++++|+++||+ |-|+++..+.++.++++++..++....                  
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~------------------  127 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG------------------  127 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            5889999999999999999999999999999999 999999999999999999998885422                  


Q ss_pred             chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc-cchhhH
Q 008020          139 SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE-VGRSWG  217 (581)
Q Consensus       139 ~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~  217 (581)
                          .+.+++.|+++|++.|...|+...+.+++.|+++      |+++.++...+..+|.+++..++|++.+. .||+.+
T Consensus       128 ----~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  128 ----FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             ----chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence                4478999999999999999999999999999999      99999999999999999999999999988 999999


Q ss_pred             HHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhcccc
Q 008020          218 YGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKAS  297 (581)
Q Consensus       218 f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (581)
                      |++.++..++..++++....+.+.+++.-++.+  .+.+                                     ++..
T Consensus       198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~E--l~~I-------------------------------------~~~k  238 (466)
T KOG2532|consen  198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISEKE--LKYI-------------------------------------EKGK  238 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHH--HHHH-------------------------------------Hhcc
Confidence            998887766665554443332222222111100  0000                                     0000


Q ss_pred             ccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccceeeeeccccccccccccccchhhhh
Q 008020          298 VVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTV  376 (581)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (581)
                      ...+..     .....||+..     ...+.++..+.. +.....++....+.++++ .+..+.+..      ..+.+.+
T Consensus       239 ~~~~~~-----~~~~vP~~~i-----~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~-~~VL~f~v~------~~G~~sa  301 (466)
T KOG2532|consen  239 SEAHVK-----KKPPVPYKAI-----LTSPPVWAIWISAFGGNWGFYLLLTYLPTYL-KEVLGFDVR------ETGFLSA  301 (466)
T ss_pred             cccccC-----CCCCCCHHHH-----HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhCCChh------hhhHHHH
Confidence            000000     0023455211     111222222211 122222233333333332 211222222      3456677


Q ss_pred             hhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhh
Q 008020          377 FFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLI--AIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYL  454 (581)
Q Consensus       377 ~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  454 (581)
                      +..+...+...+.+.+.|++.+| ..  .....+++  .++....++.++.+++...                 .+.+..
T Consensus       302 lP~l~~~~~k~~~g~lsD~l~~~-~l--s~t~~rkifn~i~~~~~ai~l~~l~~~~~-----------------~~~~~a  361 (466)
T KOG2532|consen  302 LPFLAMAIVKFVAGQLSDRLTFR-IL--SETTVRKIFNTIAFGGPAVFLLVLAFTSD-----------------EHRLLA  361 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-cC--chHhHHHHHHhHHHHHHHHHHHeeeecCC-----------------CcchHH
Confidence            77777777777778887777665 22  23344444  4455555555555554421                 111112


Q ss_pred             HHHHHHHHHHHHHHh-hhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhh
Q 008020          455 IPQFFLVGSGEGFMY-TGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLD  533 (581)
Q Consensus       455 i~~~~l~g~~~~~~~-~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~  533 (581)
                      ++. ...+.+..... +..+.-..+.+ ++..+..+|+.++...+.++++|.+++.+..            ++ +...+.
T Consensus       362 ~~~-l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~------------~~-t~~eW~  426 (466)
T KOG2532|consen  362 VIL-LTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT------------DN-TREEWR  426 (466)
T ss_pred             HHH-HHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC------------CC-CHHHHH
Confidence            222 22223333223 33333333324 5788999999999999999999999986642            01 122336


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 008020          534 CFYGLLAALSFINFGLFLLCA  554 (581)
Q Consensus       534 ~~f~~~~~~~~i~~~~~~~~~  554 (581)
                      .+|++.+++.+++.+++.++.
T Consensus       427 ~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  427 IVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHHHHHHhchheeEee
Confidence            789999999999888777774

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.85  E-value=4.6e-19  Score=178.60  Aligned_cols=391  Identities=16%  Similarity=0.064  Sum_probs=255.8

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +.++|.+++ ....+...+..+.....+.+++.+++|+|+.|.+++.++..+...+..++-|.+.||+ |.|+...++.+
T Consensus        10 ~~~~~~L~~-S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWL-STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            444556554 4444555566666777788889999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..+-.+..+++...++                     ++.+++.+++.|++ |+..+...++++..+|+++      +|
T Consensus        88 l~~IP~~~~~~a~~~~~---------------------~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~------qG  139 (417)
T COG2223          88 LLLIPCLGLAFAVTYPS---------------------TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK------QG  139 (417)
T ss_pred             HHHHHHHHHHHHccCCc---------------------hHHHHHHHHHHhcc-cceehcccccccccCChhh------hh
Confidence            99998888888854343                     57899999999998 4556888899999999999      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHh
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVG---RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARK  261 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (581)
                      .+++++. ..|+|..+...+++.+....|   |+.+-.+..+..++..+..++..++.+..++..++...          
T Consensus       140 ~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~----------  208 (417)
T COG2223         140 LALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP----------  208 (417)
T ss_pred             HHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch----------
Confidence            9999999 899999999999998888888   99888877777666555555544332221111111000          


Q ss_pred             hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH
Q 008020          262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL  341 (581)
Q Consensus       262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  341 (581)
                                                .                              +.+.+...+..+.+..+.+....
T Consensus       209 --------------------------~------------------------------~~~~v~~~~~~W~lsllY~~tFG  232 (417)
T COG2223         209 --------------------------A------------------------------QLKAVFSNKDTWLLSLLYFATFG  232 (417)
T ss_pred             --------------------------h------------------------------HHHHHhcCcchHHHHHHHHHHHH
Confidence                                      0                              00111111223333323223332


Q ss_pred             HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020          342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL  421 (581)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i  421 (581)
                      .++.+..+.+.+..      .+++-.....+.+.....+...+.-|+.+++.||++.++.          +...+..+++
T Consensus       233 ~Fvgfs~~l~~~~~------~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv----------~~~~f~~~~~  296 (417)
T COG2223         233 GFVGFSAYLPMYLV------TQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV----------TLAVFVGMAL  296 (417)
T ss_pred             HHHHHHHHHHHHHH------HhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH----------HHHHHHHHHH
Confidence            23333222221111      1111112223344555566666777888888777766532          5666777777


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHH
Q 008020          422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFF  501 (581)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~  501 (581)
                      +....+...+..            ....+.+..+..++..++..++.+-..+..+...+|+ +-|...|+......+|++
T Consensus       297 ~~~~l~~~~~~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         297 AAALLSLFLTGF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             HHHHHHcccccc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhcccccc
Confidence            766665442110            0012333333334444455555555555566656654 778999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          502 FSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW  556 (581)
Q Consensus       502 ~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~  556 (581)
                      .-|...+...+.++               .....|+++..+.+++.+..+....+
T Consensus       364 ~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         364 FLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             chhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988887765442               23556788888888887777766443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.85  E-value=7.6e-19  Score=184.48  Aligned_cols=338  Identities=10%  Similarity=0.006  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH----HHHHHHHHHHHHHH
Q 008020           36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR----TIAIFATVQTFGTG  111 (581)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~----~l~~~~~~~~~~~~  111 (581)
                      ...++..++...+.+++|.|++ ++|.|..+.|++.+++.+...++++++|.++||+ ||++    .+.+...+.  ...
T Consensus        11 ~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~   86 (382)
T PRK11128         11 LSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVA   86 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHH
Confidence            3356666777778889999996 5799999999999999999999999999999999 9842    222221111  111


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      ....+                        ++.+.+++.|.+.+++.+...|...++..+.  +++      |+++++...
T Consensus        87 ~~~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~  134 (382)
T PRK11128         87 FWFGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVR  134 (382)
T ss_pred             HHHhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHH
Confidence            11111                        2377888899999999998889888877775  334      777788888


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST  271 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  271 (581)
                      ...++|..+||.+++++.+++|||..|++.++..++..+... ..++.   ++++++.+                 +   
T Consensus       135 ~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~-----------------~---  190 (382)
T PRK11128        135 LWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQGESRQ-----------------Q---  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCcccccc-----------------c---
Confidence            888999999999999999999999999877655444433222 22211   11000000                 0   


Q ss_pred             cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhcccc
Q 008020          272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQMI  350 (581)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  350 (581)
                                    ..+                      ....+     .+..+.|.++.... .++........+...+
T Consensus       191 --------------~~~----------------------~~~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~  229 (382)
T PRK11128        191 --------------ESA----------------------GWPAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGFSA  229 (382)
T ss_pred             --------------ccc----------------------ccchH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHHHH
Confidence                          000                      00000     01111122222221 1111111111111111


Q ss_pred             ceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 008020          351 TFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVE  430 (581)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~  430 (581)
                      . +..+ .+.+      ....+.+.....+..++...+.+++.+|..          ..+.+..+.++.+++++.++.. 
T Consensus       230 ~-~~~~-~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~----------~~~~l~~~~~~~~~~~~~~~~~-  290 (382)
T PRK11128        230 I-YWQA-AGYS------ASTIGYLWSLGVVAEVLIFAFSNRLFRRWS----------ARDLLLLSAICGVVRWGLMGST-  290 (382)
T ss_pred             H-HHHH-CCCC------HhHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhh-
Confidence            1 1111 0111      111223333444455555555555543322          3333666777766666555433 


Q ss_pred             HHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHH
Q 008020          431 VKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSI  509 (581)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~  509 (581)
                                        .+.+.+++..++.|++++...+....+..+. |++.+++.+++.+ ..+.+|..+|+.+.|.
T Consensus       291 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        291 ------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              1334556677888999999999999999887 4555688999887 5667788899999987


Q ss_pred             HHh
Q 008020          510 VKA  512 (581)
Q Consensus       510 i~~  512 (581)
                      +.+
T Consensus       352 l~~  354 (382)
T PRK11128        352 LYQ  354 (382)
T ss_pred             HHH
Confidence            753

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.3e-20  Score=191.07  Aligned_cols=178  Identities=15%  Similarity=0.177  Sum_probs=158.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++.+.++..+++.++..-|.+...+ .-.++.+|.+++..|.+.+.+.+...+..|++|+++||+ .||+++.+|..+..
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW~  109 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIWT  109 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHHH
Confidence            4567777788888888888877744 346778999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++++.++++                        .+++.+.+.|.+.|+|.+.+.|.++++++|.+|+.+      |++.+
T Consensus       110 ~Av~~~~fs------------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~  159 (493)
T KOG1330|consen  110 LAVFASGFS------------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVL  159 (493)
T ss_pred             HHHHHHHHH------------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHH
Confidence            999999988                        358999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      +++|++..+|..+|.++++++.+..+ |||+|.+.+++.++..++.++..+
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            99999999999999999999988777 999999888877766655555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=5.7e-19  Score=210.77  Aligned_cols=345  Identities=9%  Similarity=-0.017  Sum_probs=197.8

Q ss_pred             hccccCCCh-hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH---HHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020           56 LGGTMHLPS-ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT---VQTFGTGLLAISTKQPQLRPPPCQATD  131 (581)
Q Consensus        56 l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (581)
                      +.+..+.+. ...++..+++.+...++.+++|+++||+ |||+++.....   +..+..+.....   +           
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---~-----------  106 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---N-----------  106 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---h-----------
Confidence            344443333 4467778889999999999999999999 99998644222   222222222222   1           


Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020          132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE  211 (581)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~  211 (581)
                                +.+.++++|+++|++.++..|+..+++.|++++++      |++++++.+.+.++|.++||.++|++...
T Consensus       107 ----------s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~  170 (1140)
T PRK06814        107 ----------SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATIS  170 (1140)
T ss_pred             ----------hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                      37889999999999999999999999999999998      99999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc
Q 008020          212 VGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR  291 (581)
Q Consensus       212 ~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  291 (581)
                      .+|++.|.+..+..++++++.+...+. +..++.........+.....                                
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------------------------------  217 (1140)
T PRK06814        171 GNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITL--------------------------------  217 (1140)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHH--------------------------------
Confidence            999999855544444444333332221 11000000000000000000                                


Q ss_pred             hhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhccccceeeeecccccccccccccc
Q 008020          292 CLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIP  370 (581)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (581)
                                             +     ..+.+.+.++.... ..+....+.....+++.+. ....+.+      ...
T Consensus       218 -----------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~------~~~  262 (1140)
T PRK06814        218 -----------------------L-----KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLA-KETLGGD------ENV  262 (1140)
T ss_pred             -----------------------H-----HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHcCCc------hHH
Confidence                                   0     00000111111111 1111111112222222111 1100111      111


Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-CCCc
Q 008020          371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT--T-GTTL  447 (581)
Q Consensus       371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~  447 (581)
                      .+.+.....++.++...+.+++..+..++.          .+..+.++.+++.+.+.+.....  .......  - .-..
T Consensus       263 ~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~  330 (1140)
T PRK06814        263 ATLFLAVFSVGVAVGSFLASKLSEGRITLL----------YVPIGALLMGLFGLDLAFASSSV--PAEPAQLKSILVFLS  330 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceeee----------eehHHHHHHHHHHHHHHhccccc--ccccccccchhhhhc
Confidence            233445556666676666666643322221          12333333333332222210000  0000000  0 0000


Q ss_pred             eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020          448 PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       448 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~  511 (581)
                      ..+.+.+++..++.|++.+...+..++++++.+|++.||+++|++++.+.++..+++.+.+.+.
T Consensus       331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233455667778899999999999999999999999999999999999999999999988774

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.84  E-value=1.2e-18  Score=182.70  Aligned_cols=156  Identities=14%  Similarity=0.106  Sum_probs=115.2

Q ss_pred             HHHHhccccC--CChhhhhhHHHH-----HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020           52 LVTYLGGTMH--LPSATSANIVTD-----FMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP  124 (581)
Q Consensus        52 l~~yl~~~l~--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ...++.++..  .+.++.+.+.+.     ..+...+++++.|+++||+ |||+++..+.++..++.++++++.+.+.   
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~---   90 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYAT---   90 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhh---
Confidence            4444444433  445555554432     2333456889999999998 9999999999999999888887633111   


Q ss_pred             CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020          125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  204 (581)
                                   ........++++|+++|++.+...+...+++.|.+++++      |++..++...+..+|..+++.+
T Consensus        91 -------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~  151 (394)
T TIGR00883        91 -------------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALT  151 (394)
T ss_pred             -------------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHH
Confidence                         000112468899999999999999999999999999998      9999999999999999999887


Q ss_pred             HHHhh--------cccchhhHHHHHHHHHHHHHH
Q 008020          205 LVYIQ--------DEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       205 ~~~l~--------~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      ++.+.        +.++||++|.+..+..+++..
T Consensus       152 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       152 VLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            76553        356899999877665554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.83  E-value=1.2e-17  Score=180.90  Aligned_cols=176  Identities=14%  Similarity=0.116  Sum_probs=138.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHH-HHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYRT-IAIF  102 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~-l~~~  102 (581)
                      +|..+.++...+...+..+.....+|.|+++ .|.+.++.+.+. ..... .++.+++|.++||+    +||||. +..+
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~   87 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT   87 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence            4456778888888888888888889999774 588988888862 22222 26889999999995    278875 6677


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020          103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (581)
                      .+...++...+++..  |.                   .+.+.+.+.+++.+++.+...+...++..|.+|+++      
T Consensus        88 ~i~~~~~~~~~a~~~--~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------  140 (491)
T PRK11010         88 QLLLLVAIAAMGFLE--PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------  140 (491)
T ss_pred             HHHHHHHHHHHHHcC--Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------
Confidence            777767766665541  11                   247778888999999999999999999999999888      


Q ss_pred             HhhHHHHHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHHHHHH
Q 008020          183 MAYFFSRFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      |+++.++...+.++|..+++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988 57999999987766655544433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=2.2e-17  Score=174.73  Aligned_cols=171  Identities=13%  Similarity=0.132  Sum_probs=138.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++.+....+...+.. ++...+.+.+++++|++..+.+++.+.+.++..++.++.|++.||+ |||+++.++.++.+++
T Consensus         4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            3455555566666555 3443444566889999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+++..+...+                     +++.+++.|++.|+|.|...+..++++.+..|+++      |++..++
T Consensus        82 ~~l~~~~~~~~---------------------~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (410)
T TIGR00885        82 AFLFWPAAEIM---------------------NYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNL  134 (410)
T ss_pred             HHHHHHHHhhc---------------------cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHH
Confidence            88765442212                     37889999999999999999999999999998888      8889999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhc--------------------------ccchhhHHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQD--------------------------EVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~--------------------------~~g~~~~f~i~~~~~~~~~  229 (581)
                      .+...++|..+||.+++.+..                          ..+||++|++.++..++..
T Consensus       135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~  200 (410)
T TIGR00885       135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA  200 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887632                          2369999986665544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=4.4e-18  Score=176.76  Aligned_cols=324  Identities=13%  Similarity=0.144  Sum_probs=202.5

Q ss_pred             HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCc
Q 008020           52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATD  131 (581)
Q Consensus        52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (581)
                      +.+.+.+++|++.++.+++.+.+.++..++.++.|+++||+ ||||++.++.+...++.+.+ .+   +           
T Consensus        22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~-----------   85 (355)
T TIGR00896        22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P-----------   85 (355)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c-----------
Confidence            34456779999999999999999999999999999999999 99999999988877777665 33   2           


Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc
Q 008020          132 ITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE  211 (581)
Q Consensus       132 ~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~  211 (581)
                                +.+.+++.|++.|+|.+...+..+..+.|.++ ++      |+++++.++...++|..+++.+++.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      26778899999999999888888888888886 46      99999999999999999999998888765


Q ss_pred             c--chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcc
Q 008020          212 V--GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQ  289 (581)
Q Consensus       212 ~--g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  289 (581)
                      .  +||+.|.+..+..++..... .  ++.++++++ +                      .+               .+ 
T Consensus       149 ~~~~w~~~f~~~~~~~~~~~~~~-~--~~~~~~~~~-~----------------------~~---------------~~-  186 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLALLAW-I--PQVRRRVAA-N----------------------QT---------------TT-  186 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-h--hhhccccCC-C----------------------CC---------------CC-
Confidence            4  38988876554433332221 1  111000000 0                      00               00 


Q ss_pred             cchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHHHHhhhccccceeeeecccccccccccc
Q 008020          290 FRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTILFWSTYAQMITFSVEQATTMQRSIGNFK  368 (581)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (581)
                                           ....++.     ..+ +........ .+....++....+.+.++ .. .+.+      .
T Consensus       187 ---------------------~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~-~g~~------~  231 (355)
T TIGR00896       187 ---------------------RLTPVRI-----WRS-PLAWQVTVFFGLQSGLYYSLIGWLPAIL-IS-HGAS------A  231 (355)
T ss_pred             ---------------------CCCCchh-----hcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCC------H
Confidence                                 0000000     011 111111111 111122222222222111 11 1111      1


Q ss_pred             ccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCce
Q 008020          369 IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLP  448 (581)
Q Consensus       369 ~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (581)
                      ...+.......++.++..++.+++.+|..+|         ++.+..+.++.+++.+.+.+...                 
T Consensus       232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-----------------  285 (355)
T TIGR00896       232 ATAGSLLALMQLAQAASALLIPALARRVKDQ---------RGIVAVLAVLQLVGLCGLLFAPM-----------------  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccc---------hHHHHHHHHHHHHHHHHHHHhhh-----------------
Confidence            1123344455666667777777766544222         12245566666666555544311                 


Q ss_pred             eeehhhHHHHHHHHHHHHHHhhhHHHhhhccC-CcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 008020          449 ISVFYLIPQFFLVGSGEGFMYTGQLDFFITQS-PKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAAT  514 (581)
Q Consensus       449 ~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~  514 (581)
                       +..+  ...++.|++.+...|...+.+.+.. +++.++..+++.+....++..+++.+.|.+.+.+
T Consensus       286 -~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       286 -HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             -hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1111  1345678898888888777766544 4678899999999888999999999998876544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=9e-18  Score=174.47  Aligned_cols=154  Identities=12%  Similarity=0.116  Sum_probs=118.1

Q ss_pred             HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020           52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYRTI-AIFATVQTFGTGLLAISTKQPQLRPPP  126 (581)
Q Consensus        52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ..+.+.+++|+|.++.+..... .+...+ .+++|.++||+    +||||.+ +.+.+...+....+++...        
T Consensus        10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--------   79 (356)
T TIGR00901        10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--------   79 (356)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc--------
Confidence            3344455789999999998655 444444 88999999996    4898874 5666666666555554411        


Q ss_pred             CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                                   ..+.+.+....++.+++.+...+...+++.|.+|+++      |+++.++...+.++|..+++.+++
T Consensus        80 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~  140 (356)
T TIGR00901        80 -------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLAL  140 (356)
T ss_pred             -------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHH
Confidence                         1235666667777788888888999999999999888      999999999999999999999999


Q ss_pred             Hhhcccc--------hhhHHHHHHHHHHHHHHHHHH
Q 008020          207 YIQDEVG--------RSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       207 ~l~~~~g--------~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      .+.+..|        ||..|++.+++.+++.+..++
T Consensus       141 ~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       141 VLASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HHhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            9888778        999999888776665555443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.81  E-value=3.4e-23  Score=222.35  Aligned_cols=394  Identities=16%  Similarity=0.113  Sum_probs=222.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHH
Q 008020           66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGV  145 (581)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (581)
                      +.+++.+...++..++.+++|+++||+ |||+.+.++.++..++.++..++...                     .+.+.
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~~  104 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFWM  104 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------ccccc
Confidence            467888999999999999999999999 99999999999999999999887311                     13778


Q ss_pred             HHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---cchhhHHHHHH
Q 008020          146 LYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE---VGRSWGYGICS  222 (581)
Q Consensus       146 l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~i~~  222 (581)
                      +.++|++.|++.|+..+....++.|..|++.      |++..++.+....+|.+++..++..+.+.   .+||..+.++.
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~  178 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGA  178 (451)
T ss_pred             ccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999      99999999998899988887666444332   35999888777


Q ss_pred             HHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccc---hhcccccc
Q 008020          223 ICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFR---CLDKASVV  299 (581)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  299 (581)
                      +..++.++...+                                .||+|+|++.+++.++..+.-++.+   ..+.+ ..
T Consensus       179 ~~~l~~~~~~~~--------------------------------~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-~~  225 (451)
T PF00083_consen  179 IPSLLVLLLRFF--------------------------------LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-IE  225 (451)
T ss_pred             cccccccccccc--------------------------------cccccceeccccccccccccccccccccccccc-cc
Confidence            665544333222                                2334444333222111111000000   00000 00


Q ss_pred             ccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH-HHhhhccccceeeeeccccccccccccccch-hhhhh
Q 008020          300 TNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL-FWSTYAQMITFSVEQATTMQRSIGNFKIPAA-SLTVF  377 (581)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  377 (581)
                      ++.+..+.....+..|+.....+. .+++++..+.+...... .+....++.+.....          .+.+.. .....
T Consensus       226 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~----------~~~~~~~~~~~~  294 (451)
T PF00083_consen  226 EIKAEKKESQESKASWRDLFRNKK-YRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN----------AGISNSFLATLI  294 (451)
T ss_pred             ccccccccccccceeeeecccccc-ccccccccccccccccccccccccccccccccc----------cccccccccccc
Confidence            000000000000011211111111 12222222211111111 001111111111110          011111 11111


Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020          378 FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASAS-VVEVKRLAVAKANGTTGTTLPISVFYLIP  456 (581)
Q Consensus       378 ~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~  456 (581)
                      ..+..++...+...+.++++||..          +..+..+++++.+.++ ......          +.+...+...++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~GRr~~----------~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~i~~  354 (451)
T PF00083_consen  295 LGLVNFLGTLLAIFLIDRFGRRKL----------LIIGLLLMAICSLILGIIFFLGV----------SSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccccccccccccccc----------ccccccccccccccccccccccc----------cccccccccccee
Confidence            222222222223344445555422          4556666665555443 110000          0000012222222


Q ss_pred             HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHH
Q 008020          457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFY  536 (581)
Q Consensus       457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f  536 (581)
                      .............+..+.+..|.+|++.|++++|+....+.+++.+++.+.+.+.+.             .+   ....|
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------------~~---~~~~~  418 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------------LG---GWGVF  418 (451)
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------cc---ccccc
Confidence            222222333345688889999999999999999999999999999988877654311             11   12356


Q ss_pred             HHHHHHHHHHHHHHHhhhccccccccCCchh
Q 008020          537 GLLAALSFINFGLFLLCASWYKRKKAKQVPE  567 (581)
Q Consensus       537 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  567 (581)
                      ++.++++++..++.+++.+|+|+++++|.++
T Consensus       419 ~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~  449 (451)
T PF00083_consen  419 LIFAGVCLIAIIFVYFFLPETKGKTLEEIQE  449 (451)
T ss_pred             hhhHHHHHHHHhheeEEEeeCCCCCHHHHHh
Confidence            7778888888888899999999999988765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=1.4e-16  Score=168.55  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc----ccchH-HHHHHHHHHHH
Q 008020           34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF----LGRYR-TIAIFATVQTF  108 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grr~-~l~~~~~~~~~  108 (581)
                      .+..++.+.+.+.-...-+|.|+++ .|++.++.|.+......  .+..+++|+++||+    +|||| .+.++.+..++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            3455666667777777889999985 59999999998666654  68999999999997    26665 67788887777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..++++...                     ..+.+.+++..++.++..+...+...+++.|.+|+++      |+++.+
T Consensus        81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~  133 (402)
T PRK11902         81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA  133 (402)
T ss_pred             HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence            7776665411                     1235667777777788888888999999999999998      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +...+.++|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888775 59999999877665554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.79  E-value=4.2e-16  Score=165.48  Aligned_cols=441  Identities=14%  Similarity=0.081  Sum_probs=246.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchHHHHHH-HH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYRTIAIF-AT  104 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~l~~~-~~  104 (581)
                      .+..+..+.+..++++-...+++++|+ +++|.+....+.+..+..+...+.+|+.|+++||    + ||||.++++ .+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            456667777778888888888888887 4799999999999999999999999999999995    7 999988875 55


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ..+++.++++++........    . +  ..............++..+..++.....+...++++|++|+++++    ++
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~----~-~--~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~  151 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFG----D-N--LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR  151 (477)
T ss_pred             HHHHHHHHHHhCchhhhhcc----c-c--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence            55556666665522110000    0 0  000000011134455555566677878888899999999988622    46


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHh--hccc-------------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChh
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYI--QDEV-------------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPI  249 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l--~~~~-------------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (581)
                      .+.++.....++|..+|+.++++.  .+..             +.+..|++.+++.++..++..+..++.+..+++.. .
T Consensus       152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~-~  230 (477)
T TIGR01301       152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF-I  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc-h
Confidence            789999999999999999988865  2111             56888998888777766665554433221110000 0


Q ss_pred             HHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHh-HHH
Q 008020          250 VHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEE-VKM  328 (581)
Q Consensus       250 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  328 (581)
                      ++                      -++++   +.  ..                       ....++.+. +...+ -|.
T Consensus       231 ~~----------------------~~~~~---~~--~~-----------------------~~~~~~~i~-~~~~~mP~~  259 (477)
T TIGR01301       231 NS----------------------EAAPP---SK--HG-----------------------EEAFFGELF-GAFKYLPRP  259 (477)
T ss_pred             hh----------------------hcccc---cc--cc-----------------------hhhhHHHHH-HHHHHCCHH
Confidence            00                      00000   00  00                       000000000 00000 122


Q ss_pred             HHHHHHHHHHHHHHHhhhccccceeeeeccc--cccccccc--ccc-chhhhhhhHHHHHHHHHhhhhhhhhccccccCC
Q 008020          329 VIRLLPIWATTILFWSTYAQMITFSVEQATT--MQRSIGNF--KIP-AASLTVFFVAAILITLGAYDRLIIPLLKKRKGK  403 (581)
Q Consensus       329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~  403 (581)
                      +.+++.+-++.-..|..+..+.+-++-+..+  .+..-..|  +.. ..+...++.+...+.+.+..    ++.+|...+
T Consensus       260 m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~----~l~~~~g~~  335 (477)
T TIGR01301       260 VWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME----KLCRGWGAG  335 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccc
Confidence            2223333333333333333333322211100  00000001  000 01111222222223333333    333443210


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCceee-ehhhHHHHHHHHHHHHHHhhhHHHhhhccCC
Q 008020          404 PGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGT-TGTTLPIS-VFYLIPQFFLVGSGEGFMYTGQLDFFITQSP  481 (581)
Q Consensus       404 ~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P  481 (581)
                           ++.-.++.++.+++++...+...-..+..++++. +--+.... .+..+..+.+.|+..+..+...++++++..|
T Consensus       336 -----k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       336 -----KRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence                 1123677778888877766553210000000000 00000111 2456677788999999999999999999999


Q ss_pred             cc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020          482 KG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK  558 (581)
Q Consensus       482 ~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~  558 (581)
                      ++  ..|..+|+.|..--+...+.....|.+....++              +....+.+.++..+++.+..++..|+.+
T Consensus       411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            54  559999999999999999988877775544321              1134567777888888888877766543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.78  E-value=4.3e-16  Score=163.18  Aligned_cols=381  Identities=14%  Similarity=0.113  Sum_probs=213.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Q 008020           34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLL  113 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~  113 (581)
                      +...+++..+.+-...++++.|+++ .|++..|.|.+.+...+...++++++|+++||...+||.+.++.++..+...+.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445555556666677889999985 679999999999999999999999999999998456777777766666554444


Q ss_pred             HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHH
Q 008020          114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV  193 (581)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  193 (581)
                      ...                        .+.+.+++..++..+......|...++..+...+++        .-++-....
T Consensus        86 ~~~------------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~--------~~YG~iRlw  133 (400)
T PF03825_consen   86 AFS------------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG--------KDYGRIRLW  133 (400)
T ss_pred             HHh------------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccc--------CCCCcchhh
Confidence            433                        125566666777777777777888887777666433        223333334


Q ss_pred             HHhhHHHHHHH-HHHhhcccc---hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCC
Q 008020          194 ISTGTLMAVTV-LVYIQDEVG---RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPS  269 (581)
Q Consensus       194 ~~~g~~i~~~~-~~~l~~~~g---~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  269 (581)
                      .++|..++... ++.+....+   ....+++.....++.... .+..|+.+.++..++..++                  
T Consensus       134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~------------------  194 (400)
T PF03825_consen  134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKK------------------  194 (400)
T ss_pred             hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCccc------------------
Confidence            45555555332 222222222   233455554433322221 2222222110000000000                  


Q ss_pred             CccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhcc
Q 008020          270 STASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQ  348 (581)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  348 (581)
                                          ....|.                   +      ++.+.|+.+..+. .++.+... ..++.
T Consensus       195 --------------------~~~~~~-------------------~------~llk~~~~~~Fll~~~l~~~~~-~~~~~  228 (400)
T PF03825_consen  195 --------------------LLGLDA-------------------L------KLLKNPRFLVFLLAAFLIGISH-AAYYT  228 (400)
T ss_pred             --------------------ccchHH-------------------H------HHhcCccHHHHHHHHHHHHHHH-HHHHH
Confidence                                000000                   0      0011112222211 12222222 22222


Q ss_pred             ccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008020          349 MITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV  428 (581)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~  428 (581)
                      +.+.+..+.....      ....+.+.++..+..+..-.+.+++.    +|      .+..+.+.++.+..++-..+++.
T Consensus       229 f~~~yl~~~gg~~------~~~~g~~~~l~~~aEi~~f~~~~~~~----~r------~g~~~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  229 FFSIYLQELGGYS------GSTIGILWALGVVAEIPFFFFSGRFL----KR------FGIKWLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHcccch------hhHHHHHHHHHHHHHHHHHHHHHHHH----Hh------cCHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222111000      01122233344444455444444443    43      34555677888888888777765


Q ss_pred             HHHHHHHHHhhcCCCCCCceeeehh----hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHH-HHhHHHHHH
Q 008020          429 VEVKRLAVAKANGTTGTTLPISVFY----LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLT-TLSLGFFFS  503 (581)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~----li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~~g  503 (581)
                      ..                  .+++.    ..+...++|+.+++..++...|+.+.+|++.|++++|+++. ...+|..+|
T Consensus       293 ~~------------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG  354 (400)
T PF03825_consen  293 FS------------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG  354 (400)
T ss_pred             hc------------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence            52                  12111    22224579999999999999999999999999999999885 678999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW  556 (581)
Q Consensus       504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~  556 (581)
                      ..+.|.+.+..+.+.          ...+..++.+.+++.++..+++++..|+
T Consensus       355 ~~igG~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  355 SLIGGWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999998775433211          1112345666777777777777776554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=4.5e-16  Score=168.07  Aligned_cols=364  Identities=11%  Similarity=0.053  Sum_probs=206.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccc-hHHHHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----SFLGR-YRTIAIFATVQTFG  109 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Gr-r~~l~~~~~~~~~~  109 (581)
                      -+..+..++.+..+..+++.|+++.+|++..+.|.+..+..+...+..|+.|+++|    |+ || |+.++++.+..+++
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~   90 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVV   90 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHH
Confidence            34556667777778889999999999999999999999999999999999999999    66 88 55566677776766


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFS  188 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~  188 (581)
                      ..++...   |..               ........+++..++..++..+......++..|+.++ ++      |.+..+
T Consensus        91 ~~llf~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~~  146 (473)
T PRK10429         91 LFLLFSA---HLF---------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLVP  146 (473)
T ss_pred             HHHHHcC---CCC---------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHHH
Confidence            6555432   210               0111244555666677888888888999999999854 44      899888


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHh
Q 008020          189 RFFFVISTGTLMAVTVLVYIQD-------EVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARK  261 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~-------~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  261 (581)
                      +.....++|+.+.+.+...+..       ..+|+....+.++..++..+..+...++. .+++..++.            
T Consensus       147 ~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~-~~~~~~~~~------------  213 (473)
T PRK10429        147 YPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV-YSSDNQVSA------------  213 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec-CCccccccc------------
Confidence            8777777776666555443322       12455444444433333332222211111 000000000            


Q ss_pred             hcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHH
Q 008020          262 KRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTIL  341 (581)
Q Consensus       262 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  341 (581)
                             +                 ++...+.+.                   +     +.+.+.|.++..+...+....
T Consensus       214 -------~-----------------~~~~~~~~~-------------------~-----~~~~~n~~~~~ll~~~~~~~~  245 (473)
T PRK10429        214 -------E-----------------GSHLTLKDI-------------------V-----ALIYKNDQLSCLLGMALAYNI  245 (473)
T ss_pred             -------c-----------------ccCCCHHHH-------------------H-----HHHhcCHHHHHHHHHHHHHHH
Confidence                   0                 000000000                   0     001011233322222222222


Q ss_pred             HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020          342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL  421 (581)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i  421 (581)
                      ..........++...... + .    . ....+..+..+..++..++.+++.+|+.+|          +.+..+..+..+
T Consensus       246 ~~~~~~~~~~y~~~y~~~-~-~----~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk----------~~~~~~~~~~~~  308 (473)
T PRK10429        246 ASNIINGFAIYYFTYVIG-D-A----D-LFPYYLSYAGAANLVTLILFPRLVKSLSRR----------ILWAGASIFPVL  308 (473)
T ss_pred             HHHHHhhheeeEEEEECC-C-H----H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH----------HHHHHHHHHHHH
Confidence            222222222222221111 1 0    1 112233344455666667776665444433          224445554444


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHH
Q 008020          422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLT  494 (581)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~  494 (581)
                      +.+.+......             + ..+.+.+++..++.+++.+...+..+++..|..+       ++..|...|.+.+
T Consensus       309 ~~~~~~~~~~~-------------~-~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~  374 (473)
T PRK10429        309 SCGVLLLMGLA-------------A-PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTM  374 (473)
T ss_pred             HHHHHHHHhcc-------------C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHH
Confidence            44333221000             0 1123344555677889999999999999999976       4556778999999


Q ss_pred             HHhHHHHHHHHHHHHHHhhhc
Q 008020          495 TLSLGFFFSSLLVSIVKAATG  515 (581)
Q Consensus       495 ~~~lg~~~g~~~~~~i~~~~~  515 (581)
                      ...++..+++.+.+.+.+..+
T Consensus       375 ~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        375 VVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999998876554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.77  E-value=6.2e-18  Score=170.86  Aligned_cols=435  Identities=14%  Similarity=0.099  Sum_probs=234.1

Q ss_pred             CcchhHHHHHH---HHHHHHHHHHHHHHHHHH----hccc---cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 008020           27 GWVPAALSLGI---EICERLSTMGIAVNLVTY----LGGT---MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY   96 (581)
Q Consensus        27 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~y----l~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr   96 (581)
                      .|+.+-.+.++   .+......+.+....+.+    -...   =|+++.-.+.+..+..++.++++++.||++||+ |||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence            45554444443   334444444444443332    2211   236677788899999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCC
Q 008020           97 RTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKD  176 (581)
Q Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~  176 (581)
                      +++...++++++++++++++...+                 .....+..++..|+++|+|.|+-+|+..+..+|..-++.
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~-----------------~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~  177 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTT-----------------SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT  177 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCC-----------------CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc
Confidence            999999999999999776653311                 122457889999999999999999999999999888877


Q ss_pred             hHHHhHHhhHHHHHHHHHHhhH----HHHHHHHHHhhcc-----------cchhhHHHHHHHHHHHHHHHHHHccccccc
Q 008020          177 EKEKTQMAYFFSRFFFVISTGT----LMAVTVLVYIQDE-----------VGRSWGYGICSICMFTAILIFLSGTRRYRY  241 (581)
Q Consensus       177 ~~~~~~r~~~~~~~~~~~~~g~----~i~~~~~~~l~~~-----------~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~  241 (581)
                            ||...+........|.    .++.++.+.+-..           .=||..|.+.++..++.+..-+.+++..++
T Consensus       178 ------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y  251 (538)
T KOG0252|consen  178 ------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARY  251 (538)
T ss_pred             ------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhH
Confidence                  8888776444444444    4443333332111           128888877665544333322222221111


Q ss_pred             cCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcc
Q 008020          242 KKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVT  321 (581)
Q Consensus       242 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (581)
                      +.       ...+-...+..  +.+.+.+.  -.++++      .        ......+         .++.+.++...
T Consensus       252 ~a-------l~~~~~~~a~~--d~~k~~~~--~~~~~~------~--------~~~~~~~---------~~~~~~~F~~~  297 (538)
T KOG0252|consen  252 TA-------LVSKKLKQAAG--DMKKVLSV--DIEAES------T--------AESDVPP---------PSNSFGLFSRL  297 (538)
T ss_pred             HH-------HhhcCHhhhhh--cccccccc--ccchhh------c--------cccCCCC---------cccccchHHHH
Confidence            10       00000111110  11111000  000000      0        0000000         00111001000


Q ss_pred             hhH-hHHHHHHHHHHHHHHHHHHhhhcc-ccceeeeeccccccccccccccch---h----hhhhhHHHHHHHHHhhh--
Q 008020          322 RVE-EVKMVIRLLPIWATTILFWSTYAQ-MITFSVEQATTMQRSIGNFKIPAA---S----LTVFFVAAILITLGAYD--  390 (581)
Q Consensus       322 ~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~i~~~~l~~--  390 (581)
                      ... .-++++...       ..|..+-. +.+.-..+..-.+    ..++.++   .    -.+.....++.++.+-+  
T Consensus       298 f~~~hg~~Llgt~-------~~WFllDiafy~~nL~~s~I~~----~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw  366 (538)
T KOG0252|consen  298 FLRWHGKHLLGTA-------GTWFLLDIAFYGQNLFQSVIFS----AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYW  366 (538)
T ss_pred             HHHHHHHHHHHHH-------HHHHhhhhhhhccccHHHHHHH----hhccCCCcchHHHHHHHHHHHHHHHHHccCCcee
Confidence            000 012222222       22222111 0011111110000    0011110   0    01112222223332222  


Q ss_pred             ---hhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHH-HHHHHH
Q 008020          391 ---RLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFL-VGSGEG  466 (581)
Q Consensus       391 ---~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l-~g~~~~  466 (581)
                         .+++.++||          ...+.|+.++++.+++++...++               ..+-...++.+.+ .-+++.
T Consensus       367 ~tv~~id~iGRk----------~iq~~GF~~~~i~~~~~~~~y~~---------------~~~~~Gf~v~y~l~~ff~NF  421 (538)
T KOG0252|consen  367 FTVYFIDIIGRK----------YIQLMGFFIMTIFFFVIAGPYNQ---------------LENTIGFVVLYSLTFFFGNF  421 (538)
T ss_pred             EEEEEeehhhhH----------HHHHhhHHHHHHHHHHHcCCccc---------------ccccCceeehHHHHHHHHhc
Confidence               223333333          34677888888877777644211               0111122333333 345666


Q ss_pred             HHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHH
Q 008020          467 FMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFIN  546 (581)
Q Consensus       467 ~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~  546 (581)
                      .-+.+...+.+|.+|.+.||+.-|++-.+.-+|+.++.........       +++ |.   ..+..+.+++++++++++
T Consensus       422 GPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~-------~~y-p~---~~g~~~v~~i~~~~~~~g  490 (538)
T KOG0252|consen  422 GPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD-------HNY-PP---NIGVRNVFIILAGCMLLG  490 (538)
T ss_pred             CCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh-------ccC-Cc---cccchHHHHHHHHHHHHh
Confidence            6667888899999999999999999999999999999988765532       222 11   233467789999999998


Q ss_pred             HHHHHhhhccccccccCCchh
Q 008020          547 FGLFLLCASWYKRKKAKQVPE  567 (581)
Q Consensus       547 ~~~~~~~~~~~~~~~~~~~~~  567 (581)
                      .++.+++. |+|+|++|+.+.
T Consensus       491 i~~T~l~p-Etk~~~leei~~  510 (538)
T KOG0252|consen  491 ILFTLLIP-ETKGKSLEEISN  510 (538)
T ss_pred             HheeEEee-cccccCHHHhcC
Confidence            88877775 999999887754

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.76  E-value=1e-15  Score=167.57  Aligned_cols=140  Identities=19%  Similarity=0.105  Sum_probs=124.5

Q ss_pred             cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020           58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH  137 (581)
Q Consensus        58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (581)
                      +..+.+........+++.++..++++++|.++||+ |||++++.++++.+++.++.+++.+                   
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~-------------------  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN-------------------  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence            45667788888999999999999999999999996 9999999999999999999998833                   


Q ss_pred             CchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhH
Q 008020          138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWG  217 (581)
Q Consensus       138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~  217 (581)
                           ++.+++.|++.|++.++...+...+++|.++++.      |+.+..+ ......++.++|..++++..  +||+.
T Consensus       171 -----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  171 -----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             -----HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence                 8999999999999999999999999999999999      9999999 77777888888888888876  89999


Q ss_pred             HHHHHHHHHHHHHH
Q 008020          218 YGICSICMFTAILI  231 (581)
Q Consensus       218 f~i~~~~~~~~~~~  231 (581)
                      +++..+..++.++.
T Consensus       237 ~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  237 FWIISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99877766655554

>PRK09848 glucuronide transporter; Provisional

Probab=99.76  E-value=2e-15  Score=161.98  Aligned_cols=360  Identities=11%  Similarity=0.070  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTI-AIFATVQTFGT  110 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l-~~~~~~~~~~~  110 (581)
                      ....+..+..+..+.++++.|+++.+|++..+.|.+.....+...+..++.|+++||.   .||||.. .++.+...+..
T Consensus        14 g~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~   93 (448)
T PRK09848         14 SLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS   93 (448)
T ss_pred             ccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence            3456666777777778888999999999999999999999999999999999999994   2666644 55555454444


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      .++...   +.              +..........++...+.+++.+...+...++..++.++.++     |.+..++.
T Consensus        94 ~~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~r  151 (448)
T PRK09848         94 VLVFWV---PT--------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAAR  151 (448)
T ss_pred             HHHHhC---cC--------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHHH
Confidence            433211   10              000111234445555677888888888888888877766432     66666554


Q ss_pred             HHH-----HHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          191 FFV-----ISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       191 ~~~-----~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      .++     .+++..++|.+.+.........+..+. .++.+++.++.+......+++.+++.+.....+.          
T Consensus       152 ~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~----------  220 (448)
T PRK09848        152 GIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQPSLKIS----------  220 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHH----------
Confidence            433     345556666666543211111111111 1112222222221111111100000000000000          


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST  345 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  345 (581)
                                                                       +     +.....|.+.......+.....+..
T Consensus       221 -------------------------------------------------~-----~~l~~n~~f~~~~~~~~~~~~~~~~  246 (448)
T PRK09848        221 -------------------------------------------------L-----QTLKRNRPLFMLCIGALCVLISTFA  246 (448)
T ss_pred             -------------------------------------------------H-----HHHhCCchHHHHHHHHHHHHHHHHH
Confidence                                                             0     0000112222221111111111111


Q ss_pred             hccccceeeeeccccccccccccccchhhhhhh-HHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020          346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFF-VAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA  424 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~  424 (581)
                      +.....++.....+.+      .. ...+...+ .+..++..++..++.+|..+|          +.+.+|.++..++.+
T Consensus       247 ~~~~~~~~~~~~~g~~------~~-~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~----------~~~~~g~~~~~i~~~  309 (448)
T PRK09848        247 VSASSLFYVRYVLNDT------GL-FTVLVLVQNLVGTVASAPLVPGMVARIGKK----------NTFLIGALLGTCGYL  309 (448)
T ss_pred             HhhhheeeEeeecCCh------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHH
Confidence            2212222222111111      11 11111222 334455566666665433322          336677777777665


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcc-------hhHHHHHHHHHHHh
Q 008020          425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG-------MKTMSTGLFLTTLS  497 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~-------~rg~~~gi~~~~~~  497 (581)
                      .+.+..                 ..+.+.++...++.++|++...+..++...+..|++       .+|..+|++++.+.
T Consensus       310 ~~~~~~-----------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~k  372 (448)
T PRK09848        310 LFFWVS-----------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRK  372 (448)
T ss_pred             HHHHcC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHH
Confidence            554321                 123344555667889999999999999999988754       56999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 008020          498 LGFFFSSLLVSIVKAATG  515 (581)
Q Consensus       498 lg~~~g~~~~~~i~~~~~  515 (581)
                      +|..+++.+.+.+....+
T Consensus       373 lg~aig~~i~g~~l~~~G  390 (448)
T PRK09848        373 CGQAIGGSIPAFILGLSG  390 (448)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999998776543

>PRK09669 putative symporter YagG; Provisional

Probab=99.75  E-value=1.5e-15  Score=162.87  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchH-HHHHHHHHHHHHH
Q 008020           36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYR-TIAIFATVQTFGT  110 (581)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~-~l~~~~~~~~~~~  110 (581)
                      +..+..+..+..+..+++.|+++.+|++..+++.+..+..+...+..|+.|+++||    + |||| .++.+.+...++.
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~   94 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVC   94 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHH
Confidence            44455666666677889999999999999999999999999999999999999999    5 7754 5556666666665


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      .++...   |..               ........+++..++.+.+..+......++.+|+.++.++     |++..++.
T Consensus        95 ~l~f~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r  151 (444)
T PRK09669         95 LLTFYT---PDF---------------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWR  151 (444)
T ss_pred             HHHHhC---CCC---------------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHH
Confidence            544433   210               0112345566666666777777777788999998865331     88888888


Q ss_pred             HHHHHhhHHHHHHHHHHhhc-------ccchhhHHHHHHHHHHHHH
Q 008020          191 FFVISTGTLMAVTVLVYIQD-------EVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~~-------~~g~~~~f~i~~~~~~~~~  229 (581)
                      ....++|..+++.+...+..       ..||+..+.+.+++.++..
T Consensus       152 ~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~  197 (444)
T PRK09669        152 FALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF  197 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            88888888877765543322       2357766665554444433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=1.1e-16  Score=158.20  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=106.1

Q ss_pred             cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCc
Q 008020           60 MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHAS  139 (581)
Q Consensus        60 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (581)
                      .+-+..-.|.+-+.+++..++.++.+|.++||+ |||++++.|.+..++..++.+.+.+                     
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~---------------------  120 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN---------------------  120 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            334556678999999999999999999999999 9999999999999998888888733                     


Q ss_pred             hhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          140 GIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       140 ~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                         ...+.++|++.|+.-|-. ....++++|.+++++      |+.+++...++..+|.++||.++|++.+
T Consensus       121 ---F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  121 ---FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ---HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence               666777799999998865 667799999999999      9999999999999999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.74  E-value=3.8e-15  Score=160.40  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=120.1

Q ss_pred             HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ....++.+++|-+ ....|+.+...++..+..++.|.++|.+ |||..++.+.++.++|.+.++.+.+            
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~------------  130 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN------------  130 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc------------
Confidence            4456788888864 6677888999999999999999999998 9999999999999999999988743            


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                                  ...++.+..+.|+|.|... .....++|..|.+.      |..+..+.....-....++|.++..+..
T Consensus       131 ------------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~  191 (599)
T PF06609_consen  131 ------------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAA  191 (599)
T ss_pred             ------------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhcc
Confidence                        6779999999999977765 44556899999888      8777766665555555567777766666


Q ss_pred             ccchhhHHHHHHHHHHHHHHHH
Q 008020          211 EVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       211 ~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      +.+|||.|++..+...+++++.
T Consensus       192 ~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  192 HSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             CCCcchHHHHHHHHHHHHHHHH
Confidence            7799999998887766655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=99.73  E-value=6.1e-15  Score=158.61  Aligned_cols=379  Identities=13%  Similarity=0.106  Sum_probs=213.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-----RYRTIAIFAT  104 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~l~~~~~  104 (581)
                      ...++...++...+. +.....++.++++++|++.++.+...+...+...+-.+ +|.++||+ +     ||+.+.++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            344555578888888 77778888999999999999999999999888888666 89999998 7     7777777765


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +.. ...+..++.. +                    .......+.+++.+++.+...++.-++..|..+ ++++   .++
T Consensus       104 l~~-~~~~~~l~~~-~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~  157 (468)
T TIGR00788       104 LGS-AILYGLLPGK-V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP  157 (468)
T ss_pred             HHH-HHHHHhcccc-c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence            542 1122222210 1                    113334447788899999999999999999998 4411   133


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcc
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRK  264 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  264 (581)
                      ...++.+...++|..+|+.++|++.+..+|+..|++.+++.++..+...+.+++.+...++..+..  .           
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~--~-----------  224 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL--E-----------  224 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc--h-----------
Confidence            344555556679999999999999998999999988777666554433333322100011000000  0           


Q ss_pred             cccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHh
Q 008020          265 VELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWS  344 (581)
Q Consensus       265 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  344 (581)
                               .+.     ...........  +..             ....+      ....++.+...+.+   ..+.+.
T Consensus       225 ---------~~~-----~~~~~~~~~~~--~~~-------------~~~l~------~~l~~~~i~~~l~f---ifl~~~  266 (468)
T TIGR00788       225 ---------MNM-----ALLTLGVLANV--KVQ-------------ILGLR------GAIQLLEIAKPLIF---IFLSYA  266 (468)
T ss_pred             ---------hhh-----hhhhhhHHHHH--HHH-------------HHHHH------HHHhcHHHHHHHHH---HHHHHh
Confidence                     000     00000000000  000             00000      00001122211111   111011


Q ss_pred             hhcccc-ceeeeeccccccccccccccc---hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHH
Q 008020          345 TYAQMI-TFSVEQATTMQRSIGNFKIPA---ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSA  420 (581)
Q Consensus       345 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~  420 (581)
                      ...... ..+......       .+.++   +.......++.++...+.+++.    +|      .+.++.+.++.++.+
T Consensus       267 ~~~~~~~~~f~~~~~~-------lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~----~~------~~~r~~l~~~~~l~~  329 (468)
T TIGR00788       267 NLPGASGSVFCATTQC-------LPGGPSFSGMSKVVGNLGSLCGVGGYDRFL----KT------FPYRLLFGVTTLLYT  329 (468)
T ss_pred             hcCCCCceeEEEEccc-------CCCCcchhhhHHHHHHHHHHHHHHHHHHHH----hh------CCHHHHHHHHHHHHH
Confidence            111111 111111111       12222   2233334444555555554442    32      344455566666665


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020          421 LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF  500 (581)
Q Consensus       421 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~  500 (581)
                      ++......... +.+.  ..+      ....+++....++.+++.++...+...++.+.+|++.+|+..|+.+...++|.
T Consensus       330 ~~~~~~~~l~~-~~~~--~~g------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~  400 (468)
T TIGR00788       330 LSSLFDLILVK-RWNL--AFG------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGS  400 (468)
T ss_pred             HHHhCceeeee-cccc--ccC------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHH
Confidence            55433221100 0000  000      01123344455678888888898899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 008020          501 FFSSLLVSIVKAAT  514 (581)
Q Consensus       501 ~~g~~~~~~i~~~~  514 (581)
                      .+++.+++.+.+..
T Consensus       401 ~v~~~~gg~l~~~~  414 (468)
T TIGR00788       401 SVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99998888876543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.73  E-value=1.5e-15  Score=168.66  Aligned_cols=203  Identities=14%  Similarity=0.142  Sum_probs=153.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      ..++.+.+.+....+.+....++.....+.++++++++.++.|++.+.+.++..++.++.|+++||+ ||||.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            3455544444445555556667777777788899999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCC----------------CCCCCCCC---------ccccccCCc--hhhHHHHHHHHHHHHHhcc
Q 008020          106 QTFGTGLLAISTKQPQL----------------RPPPCQAT---------DITKCQHAS--GIQMGVLYISLYLIALGTG  158 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~---------~~~~~~~~~--~~~~~~l~~~~~l~glg~g  158 (581)
                      +.+|.+++++.+.+..-                .+..|...         +...|...+  ......++++|+++|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            99999998876421100                01122110         111233222  1235678899999999999


Q ss_pred             CcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc----------------------chhh
Q 008020          159 GLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV----------------------GRSW  216 (581)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~----------------------g~~~  216 (581)
                      ...+...+++.|.+|+++      |+..+++++....+|..+|+++++++.+.+                      +|+.
T Consensus       188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl  261 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI  261 (633)
T ss_pred             cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence            999999999999999999      999999999999999999999999886532                      2777


Q ss_pred             HHHHHHHHHHHHHHHHHHc
Q 008020          217 GYGICSICMFTAILIFLSG  235 (581)
Q Consensus       217 ~f~i~~~~~~~~~~~~~~~  235 (581)
                      .|++.+++.++..+.+++.
T Consensus       262 ~Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       262 GFLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            7877766655544444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.72  E-value=1.9e-15  Score=156.66  Aligned_cols=156  Identities=10%  Similarity=-0.007  Sum_probs=135.9

Q ss_pred             HHHHHHHHHhccccCCChhh-hhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008020           47 GIAVNLVTYLGGTMHLPSAT-SANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPP  125 (581)
Q Consensus        47 ~~~~~l~~yl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (581)
                      ...++..+|+.+++|++.+| .+.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++..++.        
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~--------  113 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT--------  113 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence            34456677999999999999 99999999999999999999999998 999999999999999998888873        


Q ss_pred             CCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020          126 PCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL  205 (581)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  205 (581)
                                      +...+.+.|++.|++.|... +...++..++|+++      |+++.++.+.+..+|.++++.++
T Consensus       114 ----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~  170 (511)
T TIGR00806       114 ----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLG  170 (511)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            37889999999999999999 99999999999998      99999999999999999999999


Q ss_pred             HHhhcccchhhHHH---HHHHHHHHHHHHHHHc
Q 008020          206 VYIQDEVGRSWGYG---ICSICMFTAILIFLSG  235 (581)
Q Consensus       206 ~~l~~~~g~~~~f~---i~~~~~~~~~~~~~~~  235 (581)
                      +++ ..+||++-+.   ++.....+++++.++.
T Consensus       171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            994 4678887543   5555555565555553

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.72  E-value=2.1e-14  Score=151.21  Aligned_cols=177  Identities=14%  Similarity=0.046  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhH--HHHHHHHHHHHHHHH-HHHhhhcccchHHHHHHHHHH-
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANI--VTDFMGTSFLLCLLG-GFLADSFLGRYRTIAIFATVQ-  106 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grr~~l~~~~~~~-  106 (581)
                      ...+...++.+.+.+....+.+|.|++ +.|.+.++.|.+  ........++.+++. ++.+||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            456677788888888888899999987 559999999997  356677787777777 5579998 9999876554332 


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      ...........  +.                  ......+.....+.++..+...+...++..|..++++      ++..
T Consensus        81 ~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~  134 (390)
T TIGR02718        81 SACLASLALVG--PD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG  134 (390)
T ss_pred             HHHHHHHHcCC--cc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence            21222222110  10                  0112223333444555556666667777777776666      7777


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      .+....+..+|..+|+...+++.++.||+..|++.+++.++..+..++.
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            7778777889999999888899999999999998887766555544443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.72  E-value=4.8e-15  Score=148.71  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      ++++.+.|+..-......-.+.+.+++.++++..|++.+..+++.+++++.++.|++.+|+ |+|+.++.++.++++|..
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            3334333333333344455667788999999999999999999999999999999999998 999999999999999998


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      ++.=++..                     .++..++++.++.+.|.|...+.++++++.+.++++      -.+-+++.+
T Consensus        94 lF~pAa~~---------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q  146 (422)
T COG0738          94 LFWPAASS---------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQ  146 (422)
T ss_pred             HHhhhhhh---------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHH
Confidence            87533221                     348899999999999999999999999999999887      666688888


Q ss_pred             HHHHhhHHHHHHHHHHhhc
Q 008020          192 FVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~  210 (581)
                      ....+|+.++|++++++..
T Consensus       147 ~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         147 AFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            8899999999999988766

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.71  E-value=3.1e-15  Score=147.00  Aligned_cols=422  Identities=13%  Similarity=0.080  Sum_probs=241.4

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      .-.........+.+-+....+.+..|...+.....++..+++..+|.++|++ |||+.+.+..+...+..++-..+   |
T Consensus        89 ad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---p  164 (528)
T KOG0253|consen   89 ADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---P  164 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---C
Confidence            3344445555666667778888999999999999999999999999999998 99999998888777766666655   3


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i  200 (581)
                      +                     +..+++.|.+.++|.|+ .|...++-.|..|...      |..-+-+. ....+|..+
T Consensus       165 n---------------------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~  215 (528)
T KOG0253|consen  165 N---------------------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVF  215 (528)
T ss_pred             C---------------------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHH
Confidence            3                     77899999999999999 8888899999999887      77766555 667889988


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcc
Q 008020          201 AVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPE  280 (581)
Q Consensus       201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~  280 (581)
                      .-.+.-....++||||..........+.....++..+..+..--++++.+. ...+....+.-+.++|......+..++-
T Consensus       216 ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kA-letL~kiArmNg~qlplgvl~~s~~~~~  294 (528)
T KOG0253|consen  216 EALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKA-LETLHKIARMNGKQLPLGVLESSAIDRQ  294 (528)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHH-HHHHHHHHHhcCCCCCcceeeeehhhhh
Confidence            888887778888999976655544444444444433333333334444332 2233333343445555433222211110


Q ss_pred             ccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhcccccee-------
Q 008020          281 ESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFS-------  353 (581)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------  353 (581)
                      +     +|.. .+|+......++       .+.......  .-.-+|+.+..+.+|+.....|.......+-+       
T Consensus       295 e-----~e~~-~~~~~~~~a~ke-------~rg~~~nLl--sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c  359 (528)
T KOG0253|consen  295 E-----QEES-DLDDSKSSAAKE-------VRGGTTNLL--SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDAC  359 (528)
T ss_pred             h-----hhhh-chhhhhhccccc-------cccchHhhc--ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcc
Confidence            0     0001 111111000000       111110000  11223445445555544443322211111100       


Q ss_pred             ----eeeccccccccc-cccccch----hhhhhhH-HHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHH
Q 008020          354 ----VEQATTMQRSIG-NFKIPAA----SLTVFFV-AAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM  423 (581)
Q Consensus       354 ----~~~~~~~~~~~~-~~~~~~~----~~~~~~~-~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~  423 (581)
                          ...+...+.... .+.....    ++.+..- =+.++.+    .++++++||..          |...+++.++..
T Consensus       360 ~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~----~iverlGRKkT----------Mal~l~~f~ifl  425 (528)
T KOG0253|consen  360 PLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITG----VIVERLGRKKT----------MALSLILFGIFL  425 (528)
T ss_pred             ccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHH----HHHHHhcchhH----------HHHHHHHHHHHH
Confidence                000000110000 0000011    1111111 1122333    34445556533          666777776665


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHH
Q 008020          424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFS  503 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g  503 (581)
                      +.+.....                  .....+. .+..-++....+...+.|..|.+|+..|+++.|....++.+|+++.
T Consensus       426 fll~~c~~------------------rn~~tvl-lf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~  486 (528)
T KOG0253|consen  426 FLLTTCKT------------------RNAYTVL-LFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFS  486 (528)
T ss_pred             HHHHHhcC------------------cchhHHH-HHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhh
Confidence            55443321                  1111111 2223344455568889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 008020          504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKA  562 (581)
Q Consensus       504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~  562 (581)
                      |.+. +..+.+               .  ...-.+.+++.+++.+..+++-.++|+|..
T Consensus       487 p~iA-~~~e~s---------------~--sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  487 PVIA-MRAELS---------------T--SLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hHHH-HHhccc---------------e--eehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            9988 332111               0  111246677788888888888778887753

>PTZ00207 hypothetical protein; Provisional

Probab=99.71  E-value=8.6e-14  Score=150.92  Aligned_cols=171  Identities=15%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      ++|..+.+...+..+... .|++. .....+++++|++..+.+++.+.... ..++.+++|+++||+ |||+++.++.++
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~-G~R~vllig~ll  100 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYL-GPRPIFVLSMTV  100 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            334333333333333332 33333 34456788999999999998876443 345677889999998 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.++++++... .                 -..+.+.+++.|++.|+|.+...+.....+.+++| ++      ||+
T Consensus       101 ~~iG~ll~ala~~~-~-----------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~  155 (591)
T PTZ00207        101 FCLGTLLFALTFQE-V-----------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGA  155 (591)
T ss_pred             HHHHHHHHHHHhcc-c-----------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHH
Confidence            99999998886220 0                 01247889999999999999888888888999997 55      999


Q ss_pred             HHHHHHHHHHhhHHH-HHHHHHHhhcccchhhHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLM-AVTVLVYIQDEVGRSWGYGICSICMFT  227 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~  227 (581)
                      +.++.....++|+.+ +++..+++.+  +|+..|++.++..++
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~v  196 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence            999999999999964 6666666653  567766655544333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.71  E-value=2.4e-15  Score=155.12  Aligned_cols=393  Identities=10%  Similarity=0.021  Sum_probs=220.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +..|......++..+++-...++.+.++++..|++.++.|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            4677777888888888878889999999998999999999999999999999999999999998 876655544332222


Q ss_pred             --HHHHH-HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          109 --GTGLL-AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       109 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                        +-... .+.   |.                    -..-++++.++.++..+.......+.. |.+-++.   +++.+-
T Consensus        86 l~~pff~~v~~---pl--------------------l~~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~---sr~~~f  138 (412)
T PF01306_consen   86 LFGPFFIYVFG---PL--------------------LQSNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERV---SRRNGF  138 (412)
T ss_dssp             TCHHHHHHTHH---HH--------------------HHTT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHH---HHHHSS
T ss_pred             HHHHHHHHHHH---HH--------------------HHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHH---HHHhcC
Confidence              22221 111   00                    001123333333444444333333322 3332221   111233


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      -+|-.....++|..++..++|++.+ .+-+..|+++....++..++.+..++..+++.+..+..                
T Consensus       139 eYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------  201 (412)
T PF01306_consen  139 EYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------  201 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS----------------
T ss_pred             CcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc----------------
Confidence            3444556788999999999998876 45567888776655544444444332211110000000                


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST  345 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  345 (581)
                                           +.                      ++.+.+.....++.+.|+++.+..+.......|..
T Consensus       202 ---------------------~~----------------------~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~v  238 (412)
T PF01306_consen  202 ---------------------GA----------------------KKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDV  238 (412)
T ss_dssp             ---------------------SS----------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------cc----------------------CCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence                                 00                      00000000000111223444443333333333333


Q ss_pred             h-ccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHH
Q 008020          346 Y-AQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMA  424 (581)
Q Consensus       346 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~  424 (581)
                      + +|++.++.......+..    ....+.+.++..+..++...+..+++.|.+.|          ..+.++..++++-..
T Consensus       239 fdqqf~~y~~~~f~~~~~g----~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k----------~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  239 FDQQFPIYFASFFQSAGQG----NQMYGYLWSVQVFLEALMMFFSPWLINRIGAK----------NLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHHHHHHTSSSHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccC----hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChH----------hHHHHHHHHHHHHHH
Confidence            3 33332222111000000    00122333444444445444555555444433          447777777888877


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHH-HHHHhHHHHHH
Q 008020          425 SASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLF-LTTLSLGFFFS  503 (581)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~~g  503 (581)
                      ..++.                   .+++++++.-.++++-..+......-|+.+.+|++..++...+. ++..++|..+.
T Consensus       305 ~~~~~-------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~  365 (412)
T PF01306_consen  305 GSGFA-------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL  365 (412)
T ss_dssp             HHHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHhhh-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            77655                   34566777778999999999999999999999999999998885 58899999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Q 008020          504 SLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYK  558 (581)
Q Consensus       504 ~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~  558 (581)
                      +.+.|.+.+.                .+.+..|++.+++.+...++..+..++.+
T Consensus       366 s~~~G~lyd~----------------~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  366 SPLAGYLYDR----------------IGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             hhhHHhhHhh----------------cCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            9999887642                23355688888887777777776655433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=3.1e-16  Score=156.07  Aligned_cols=149  Identities=17%  Similarity=0.110  Sum_probs=135.2

Q ss_pred             cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020           58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH  137 (581)
Q Consensus        58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (581)
                      +.++-.+++.|++.+...+...+..++.|.+.||+ |+|-.+++|+.++..+++++++..                    
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------  157 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------  157 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc--------------------
Confidence            34566788999999999999999999999999998 999999999999999999999883                    


Q ss_pred             CchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhH
Q 008020          138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWG  217 (581)
Q Consensus       138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~  217 (581)
                          +++.++++|.++|+|.++..++..++++|.+|+++.     |++++|..-....+|-.+||.++|.+-+..|.+.+
T Consensus       158 ----sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP  228 (464)
T KOG3764|consen  158 ----SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP  228 (464)
T ss_pred             ----hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence                388999999999999999999999999999998863     89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcc
Q 008020          218 YGICSICMFTAILIFLSGT  236 (581)
Q Consensus       218 f~i~~~~~~~~~~~~~~~~  236 (581)
                      |++.++..++...+.++..
T Consensus       229 FlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  229 FLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHHHhee
Confidence            9998888777666655543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.68  E-value=8.8e-15  Score=156.08  Aligned_cols=358  Identities=16%  Similarity=0.140  Sum_probs=222.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh----hcccchHHH-HHHHHHHHHHHHH
Q 008020           38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----SFLGRYRTI-AIFATVQTFGTGL  112 (581)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grr~~l-~~~~~~~~~~~~~  112 (581)
                      .+..+........+++.|+++.+|+++...+.+..+..+..++..|+.|+++|    |+ ||||.. +++....+++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            34555555566678889999999999999999999999999999999999999    77 876654 5677777777766


Q ss_pred             HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020          113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (581)
                      +....  |.              ..........+.+..++..++.........++..|+.+++++     |.+..++...
T Consensus        89 lf~~~--p~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~  147 (428)
T PF13347_consen   89 LFSPP--PA--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMI  147 (428)
T ss_pred             hhccc--cc--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHH
Confidence            65430  10              000011234457777777999999999999999999986542     8999999888


Q ss_pred             HHHhhHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          193 VISTGTLMAVTVLVYIQDEV-------GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~~~-------g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      ...+|.++...+.+.+.+..       +|++...+.+++.++..++..+..++.+.+.+++++.                
T Consensus       148 ~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~----------------  211 (428)
T PF13347_consen  148 FSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKK----------------  211 (428)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccc----------------
Confidence            88888876666665554322       5777766665555554444444333200000000000                


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST  345 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  345 (581)
                                              ..+                   +..++    .-.++ |.+.......+.....+..
T Consensus       212 ------------------------~~~-------------------~~~~~----~~~~n-r~~~~l~~~~~~~~~~~~~  243 (428)
T PF13347_consen  212 ------------------------ISL-------------------RDSLR----SLFRN-RPFRILLLAFFLQWLAFAL  243 (428)
T ss_pred             ------------------------ccc-------------------ccchh----hhccc-chHHHHHHHHHHHHhhhhh
Confidence                                    000                   00000    00011 1222222221111111111


Q ss_pred             hccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHH
Q 008020          346 YAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMAS  425 (581)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~  425 (581)
                      ......++.......+      . ..+.+.....+..++..++..++.+|+.+|+.          +..+.++.+++.++
T Consensus       244 ~~~~~~y~~~~vl~~~------~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~----------~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  244 MNTFLPYYFTYVLGNE------G-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKV----------YIIGLLLAALGFLL  306 (428)
T ss_pred             hhhHHHHHHHHHhcCc------h-hhHHHHHHHHHHHHHHHHHHHHHHHHccceee----------hhhhHHHHHHHHHH
Confidence            1111111111100100      1 12233445566667777888777766655532          66777777777776


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHHHHHHHhH
Q 008020          426 ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGLFLTTLSL  498 (581)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~l  498 (581)
                      ..+...                 .+.+++.+..++.|++.+..++..+++..|..+       ++..|...|++++...+
T Consensus       307 ~~~~~~-----------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  307 LFFLGP-----------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             HHHHHh-----------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence            665521                 245667778889999999999999999998887       35579999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 008020          499 GFFFSSLLVSIVKAATG  515 (581)
Q Consensus       499 g~~~g~~~~~~i~~~~~  515 (581)
                      +..+++.+.+.+....+
T Consensus       370 ~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999998776554

>PRK11462 putative transporter; Provisional

Probab=99.65  E-value=2.8e-13  Score=145.63  Aligned_cols=152  Identities=13%  Similarity=0.093  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHH-HHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTI-AIFATVQTFGT  110 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l-~~~~~~~~~~~  110 (581)
                      -+..+..+..+..+..++..|.++.+|+++..+|.+..+.-+.-.+..|+.|+++||.   +||||.. +++.+...++.
T Consensus        15 g~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~   94 (460)
T PRK11462         15 GMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVC   94 (460)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHH
Confidence            3455566666667778899999999999999999999999999999999999999972   3887654 45667777766


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      +++...   |..               ........+.+.-++..++..+......++.+|+.++.++     |.+..++.
T Consensus        95 ~llf~~---p~~---------------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r  151 (460)
T PRK11462         95 VLAYST---PDL---------------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWR  151 (460)
T ss_pred             HHHHhC---CCC---------------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHH
Confidence            665433   210               0112244456666667888888888999999999986542     99999999


Q ss_pred             HHHHHhhHHHHHHHHHHhh
Q 008020          191 FFVISTGTLMAVTVLVYIQ  209 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~  209 (581)
                      ....++|..+++.+...+.
T Consensus       152 ~~~~~iG~~~~~~~~~plv  170 (460)
T PRK11462        152 FVLATAGGMLSTVLMMPLV  170 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9888998888877765443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.64  E-value=2.1e-14  Score=154.32  Aligned_cols=420  Identities=15%  Similarity=0.057  Sum_probs=246.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVN---LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      -|++.+..|..+...+++..-   +-..++++++-+..+.+|+.++......+..|+.+.+.||+ |.|.+.+.+.++..
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            477777777777777766533   34566789999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHH-HHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYI-SLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      +|.++.+++.+                        .+.+++ .-++.|+|.|+.+......+..+|+ ++      |+.+
T Consensus       123 ~g~~lssF~~~------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~lA  171 (509)
T KOG2504|consen  123 LGLLLSSFATS------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RALA  171 (509)
T ss_pred             HHHHHHHHHhh------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHHH
Confidence            99999999843                        544444 4456899999988888888886665 44      8999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVE  266 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  266 (581)
                      .++-..+..+|.++=|.+.-++.+.+|||..+++-..+.+-........+|...+..+.+.  .+.        ++....
T Consensus       172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~--~~~--------~~~~~~  241 (509)
T KOG2504|consen  172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE--KDL--------RNSAAS  241 (509)
T ss_pred             HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh--hhh--------cccccc
Confidence            9998888889998888888899999999999987776665555555554443222211100  000        000000


Q ss_pred             cCCCccccccCCccccccccC-----cccchhccccccccCCCCCCCCccCCCCcc-cC--cchhHhHHHHHH-HHHHHH
Q 008020          267 LPSSTASLYEDYPEESRIQHT-----YQFRCLDKASVVTNTDYSEDGAFVSNPWTL-CP--VTRVEEVKMVIR-LLPIWA  337 (581)
Q Consensus       267 ~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~l~-~~~~~~  337 (581)
                      . +....-.+....++.....     +.....+.    .++.       +..+-+. ..  +.++...+.++. .....+
T Consensus       242 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~  309 (509)
T KOG2504|consen  242 V-ESTPKPVELRISERDSGLKKLSLSNLATLKRG----PDKW-------RNSPLQAFLSMLDLSLLKDPKFLLLALSNLF  309 (509)
T ss_pred             c-cccccccccccccCCCCCCcccccchhhhhhC----Cccc-------cccchhhhhhhhhHHHHcCchHHHHHHHHHH
Confidence            0 0000000000000000000     00000000    0000       0000000 00  011111122221 111222


Q ss_pred             HHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHH
Q 008020          338 TTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLF  417 (581)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~  417 (581)
                      ....+...+...+....  ....+      ......+.++..+..++.-++.+.+.++-.        .+......++++
T Consensus       310 ~~~g~~~p~~~l~~~~~--~~g~~------~~~aa~l~Siigi~~i~gRi~~G~laD~~~--------~~~~~~~~~~ll  373 (509)
T KOG2504|consen  310 AYLGFNVPFVYLPSYAK--SLGLS------SNDAAFLLSIIGVSDIIGRIILGLLADKPG--------IRALVLFLLTLL  373 (509)
T ss_pred             HHHHHHHHHHHHHHHHh--hcCCC------hhhhHHHHHHHHHhhhhhhhhhhhhcCccc--------cchHHHHHHHHH
Confidence            22222222222221111  11111      112233444445555555555555544322        122333455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHh
Q 008020          418 LSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLS  497 (581)
Q Consensus       418 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~  497 (581)
                      +.+++.++..+.                   .+++.++...++.|+..+...........+..+.+.-+.+.|+..+.+.
T Consensus       374 ~~gl~~~~~p~~-------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~g  434 (509)
T KOG2504|consen  374 IAGLARLFLPFA-------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQG  434 (509)
T ss_pred             HHHHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhH
Confidence            666665444443                   2445667777888998888888887899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 008020          498 LGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCA  554 (581)
Q Consensus       498 lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~  554 (581)
                      ++..+|+.+.+.+.+.++               .+...|+..++..+++.++.++..
T Consensus       435 i~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  435 IGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999876544331               123345565666666655554443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.63  E-value=2.3e-13  Score=134.68  Aligned_cols=336  Identities=16%  Similarity=0.213  Sum_probs=225.5

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      -+-.+-++ ..+..-+++++|++.++++.+.+...++..+..++..+++.|+ |.++.+..++++.++|.++=...    
T Consensus        24 LR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~----   97 (395)
T COG2807          24 LRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG----   97 (395)
T ss_pred             cchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence            34444433 3445667889999999999999999999999999999999998 99999999999999999876543    


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i  200 (581)
                                           +...++.+-.+.|.|.+......++.+.+.||++       .+..++.|....++|+.+
T Consensus        98 ---------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaL  149 (395)
T COG2807          98 ---------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAAL  149 (395)
T ss_pred             ---------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHH
Confidence                                 2667889999999999999999999999999866       588899999999999999


Q ss_pred             HHHHHHHhhccc-chhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCc
Q 008020          201 AVTVLVYIQDEV-GRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYP  279 (581)
Q Consensus       201 ~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~  279 (581)
                      ++.+...+.++. ||+....+=++..++++++.+....|.+  .++.+...                             
T Consensus       150 aa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~~~~~-----------------------------  198 (395)
T COG2807         150 AAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASIATKL-----------------------------  198 (395)
T ss_pred             HhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccccccc-----------------------------
Confidence            999988887776 7999877666666666665544322111  00000000                             


Q ss_pred             cccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccc
Q 008020          280 EESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATT  359 (581)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (581)
                                           .+        ....|   ++     .......+.+-+....+|..+.+++.++.++...
T Consensus       199 ---------------------~~--------~~~vw---~~-----~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s  241 (395)
T COG2807         199 ---------------------VS--------VRKVW---RS-----PLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS  241 (395)
T ss_pred             ---------------------cc--------ccccc---cC-----chhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence                                 00        11122   11     1122223334566677778877777766554322


Q ss_pred             cccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008020          360 MQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKA  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~  439 (581)
                      ..        ..+.+.++..+..+..+.+...+..    |..+     .+........++.++++.+.+...        
T Consensus       242 a~--------~aG~llsl~~l~~~~~~ll~P~la~----R~~n-----~r~~~~~~~~~~l~G~~G~~~~P~--------  296 (395)
T COG2807         242 AA--------EAGSLLSLMQLAQLPTALLIPLLAR----RSKN-----QRPLVVLALLLMLVGLVGLLLAPG--------  296 (395)
T ss_pred             HH--------HhhhHHHHHHHHHHHHHHHHHHHHH----Hhcc-----cchHHHHHHHHHHHHHHHHHHhhh--------
Confidence            11        2233333334444444444444443    2211     112234445555555554444321        


Q ss_pred             cCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-cchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 008020          440 NGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-KGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATG  515 (581)
Q Consensus       440 ~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~  515 (581)
                              ...++|    .+++|+|.+..+|....++...++ ++..+..+|+.+....+-..+||.++|.+-+.++
T Consensus       297 --------~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         297 --------QLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             --------hHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence                    112222    367899999999888887776665 5677788888888888889999999999877664

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.4e-13  Score=146.66  Aligned_cols=151  Identities=13%  Similarity=0.106  Sum_probs=123.3

Q ss_pred             hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q 008020           56 LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC  135 (581)
Q Consensus        56 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (581)
                      +.+++++...+.+.+.++++++++++.+++|.|.||+ .-.+.+..+.+...+-.++....+                  
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------  132 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------  132 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence            4578889999999999999999999999999999998 866666555554444443333342                  


Q ss_pred             cCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh------h
Q 008020          136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI------Q  209 (581)
Q Consensus       136 ~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l------~  209 (581)
                            +.+.+++.|++.|+.+++..|+...+++.++.+++      |+.-+++++...++|.++|.+++..+      .
T Consensus       133 ------s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  133 ------SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             ------hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence                  37789999999999999999999999999999999      99999999999999999999998775      3


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020          210 DEVGRSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       210 ~~~g~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      ...||||.|.+.+++.++..++.++..|
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEec
Confidence            3568999999998776665544444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.9e-11  Score=127.69  Aligned_cols=363  Identities=15%  Similarity=0.120  Sum_probs=219.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYR-TIAIFATVQT  107 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~-~l~~~~~~~~  107 (581)
                      ..--...+..++.+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||.   .||+| -++++.+..+
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            4444556677777778888999999999999999999999999999999999999999983   26654 5566767778


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      +...++..+...                  ....+....++--.+.+++.........++.+++.++.+     +|.+..
T Consensus        95 i~~~l~F~~p~~------------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~  151 (467)
T COG2211          95 IVAVLLFITPDF------------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLT  151 (467)
T ss_pred             HHHHHHHcCCCc------------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHH
Confidence            777777665210                  011335556677778889999999999999999998755     299999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcc-------cchhhHHHHHHHHHHHHHHHHHH-ccccccccCCCCC-hhHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDE-------VGRSWGYGICSICMFTAILIFLS-GTRRYRYKKCSGS-PIVHICQVVVA  258 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~-------~g~~~~f~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~  258 (581)
                      ++-....++|.++...+.+.+...       .||+..-.+.+++..+.++..++ .++|..+..+.++ ...+....+  
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~--  229 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSF--  229 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHH--
Confidence            999999999987776666555432       34444333333332222222222 1222111110000 000000000  


Q ss_pred             HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHH
Q 008020          259 ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWAT  338 (581)
Q Consensus       259 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  338 (581)
                                                                                    ....+.|.++..+...++
T Consensus       230 --------------------------------------------------------------~~~~~Nrp~~~~l~~~l~  247 (467)
T COG2211         230 --------------------------------------------------------------LLIFKNRPLLLLLLMNLL  247 (467)
T ss_pred             --------------------------------------------------------------HHHHccchHHHHHHHHHH
Confidence                                                                          000111222222222222


Q ss_pred             HHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH
Q 008020          339 TILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL  418 (581)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l  418 (581)
                      ..+..........++....  .+..    ...+...........++..++..++..++++|          +...++.++
T Consensus       248 ~~~~~~i~~s~~~yy~~y~--lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk----------~~~~~~~~~  311 (467)
T COG2211         248 LFIAFNIRGSIMVYYVTYV--LGDP----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK----------KLFLIGLLL  311 (467)
T ss_pred             HHHHHHHHhhhhheeEEEE--cCCh----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH----------HHHHHHHHH
Confidence            2222222221112222221  1111    22222222333333444455555554333333          346777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCC-------cchhHHHHHH
Q 008020          419 SALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP-------KGMKTMSTGL  491 (581)
Q Consensus       419 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi  491 (581)
                      ..++.+.+.+..                 ..+...+++..++.+++.+...+..|+++.|...       .+.-|...+.
T Consensus       312 ~~i~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~  374 (467)
T COG2211         312 LAVGYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSG  374 (467)
T ss_pred             HHHHHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHH
Confidence            777776666552                 1234455556678889999999999999988754       4567888899


Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhh
Q 008020          492 FLTTLSLGFFFSSLLVSIVKAAT  514 (581)
Q Consensus       492 ~~~~~~lg~~~g~~~~~~i~~~~  514 (581)
                      ..+.+-+|..++..+.+.+....
T Consensus       375 ~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         375 MTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999877554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.55  E-value=2e-11  Score=130.65  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchh
Q 008020          453 YLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRL  532 (581)
Q Consensus       453 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~  532 (581)
                      .+.+.-++.|+..+...+..-++..|..|++..+...|++.+....++++||.+.+.+...+++               .
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~  446 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------Q  446 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------c
Confidence            3444556789999999999999999999999999999999999999999999999998876642               1


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 008020          533 DCFYGLLAALSFINFGLFLLC  553 (581)
Q Consensus       533 ~~~f~~~~~~~~i~~~~~~~~  553 (581)
                      ..-++...++.++++++++..
T Consensus       447 r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  447 RYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHhhc
Confidence            233455556666666666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.50  E-value=6.8e-13  Score=144.07  Aligned_cols=180  Identities=11%  Similarity=0.139  Sum_probs=130.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +++.........++....+|++..++|.|+++.+|++..+.........++..++.+++|+++||+ |||+++..+.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            445444444555667788999999999999888999988888888888889999999999999998 9999988877654


Q ss_pred             HHHHHH-HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          107 TFGTGL-LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      .++.+. +..... +                     +...+++++++.+++.+...+....+..+.+|++.      |++
T Consensus       327 ~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~  378 (490)
T PRK10642        327 FVLAIPAFILINS-N---------------------VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS  378 (490)
T ss_pred             HHHHHHHHHHHhC-C---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence            443332 222211 1                     24556778888887777666777788889999999      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      ++++.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++.
T Consensus       379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            9997444456667889999998877544 6666554444444444444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.48  E-value=1.5e-10  Score=117.68  Aligned_cols=348  Identities=14%  Similarity=0.162  Sum_probs=199.2

Q ss_pred             ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-----chHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           57 GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-----RYRTI-AIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        57 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ..+++++..-.+.+++..++.+. ..+..|+.||+. +     ||.-+ ..+..+.+.+..+.+++.-.-.        .
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--------~   76 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--------E   76 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--------c
Confidence            45788888888888887777766 577889999997 6     66444 4556666666655544421110        0


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                      .....+.+.........++-.+.|+|.+...++..++++|..|+++      |+++.++.+...-+|..++..+.+.+.+
T Consensus        77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000111222334455566667899999999999999999999999      9999999999999999999999988776


Q ss_pred             ccchhhH----HHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcccccccc
Q 008020          211 EVGRSWG----YGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQH  286 (581)
Q Consensus       211 ~~g~~~~----f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  286 (581)
                      .+...-.    -..+.+...+.++..+-.+++.++..+..++                                      
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~--------------------------------------  192 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAER--------------------------------------  192 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCC--------------------------------------
Confidence            6552221    1122222333333333322222211100000                                      


Q ss_pred             CcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecccccccccc
Q 008020          287 TYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGN  366 (581)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (581)
                       ++..+.+.                   |+.+..+  .+.++++..+  +.....+.+.-....+        +..+..+
T Consensus       193 -~~~~f~~a-------------------~~~~~~~--~~a~~f~~fl--~l~t~a~~~QD~iLEP--------ygg~Vfg  240 (403)
T PF03209_consen  193 -PRPPFREA-------------------WRQVWAS--PQARRFFVFL--FLGTLAFFMQDVILEP--------YGGEVFG  240 (403)
T ss_pred             -CCccHHHH-------------------HHHHHhC--CChhHHHHHH--HHHHHHHHhhHHHcCC--------chhHHcC
Confidence             00000000                   0000000  0112222221  1122222121111111        1111111


Q ss_pred             cccc-chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020          367 FKIP-AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGT  445 (581)
Q Consensus       367 ~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  445 (581)
                      .++. ...++.....+.++...+.+++..   +|.      ++.+...+|..+..+++..+.....              
T Consensus       241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~------~~~~~a~~G~~~~~~~f~lii~a~~--------------  297 (403)
T PF03209_consen  241 MSVGETTRLTAFWGGGTLLGMLLAGFLLS---RRL------GKKRTAALGCLLGALAFALIILAGP--------------  297 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------CchHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            1221 233455555565665555555543   221      2223345566666666655443321              


Q ss_pred             CceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhc
Q 008020          446 TLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATG  515 (581)
Q Consensus       446 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~  515 (581)
                        .-+.+.+....++.|++.+.......+...+..+++..|..+|.+..++.++..++..+.+.+.+...
T Consensus       298 --~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 --LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             --cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12446677788999999999999999999999999999999999999999999999999888776553

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=2.8e-12  Score=135.28  Aligned_cols=177  Identities=12%  Similarity=0.070  Sum_probs=132.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +++..+..+...+.....++.+..++|.|+++++|++..+.+.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            344444444444444455555667899999999999999999888888888888999999999998 9999887776554


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .+.........                        +.+.+.+.+++.+++.|...+....+..|.+|+ +      |+++
T Consensus       293 ~~~~~~~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~  341 (393)
T PRK15011        293 VCFYAGMLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSA  341 (393)
T ss_pred             HHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchH
Confidence            44433333221                        255566777777777666666667777888874 5      7889


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      .++++...++|..++|.++|++.+..||+..|++..++.+++++..+..
T Consensus       342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            9998888899999999999999998899999988877777766655543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.43  E-value=3.1e-12  Score=138.11  Aligned_cols=177  Identities=15%  Similarity=0.033  Sum_probs=134.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.+|.+.+..++....+++...++|.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+........+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4678888888888888889999999999999999999999999999999999999999999998 999877665444433


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..+..+...                      .+....++.+++.|+..............|.+|++.      |+++.+
T Consensus       337 ~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g  388 (467)
T PRK09556        337 IFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG  388 (467)
T ss_pred             HHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence            3322222210                      114445566666665433333333356679999988      999999


Q ss_pred             HHHHHHHh-hHHHHHHHHHHhhc------------ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          189 RFFFVIST-GTLMAVTVLVYIQD------------EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       189 ~~~~~~~~-g~~i~~~~~~~l~~------------~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +.+...++ |..++|.+.|++.+            ..||+..|++..++.+++.+....
T Consensus       389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            99998886 77999999999998            578999998777766666555443

>PRK09952 shikimate transporter; Provisional

Probab=99.43  E-value=4.6e-12  Score=135.58  Aligned_cols=183  Identities=14%  Similarity=0.038  Sum_probs=132.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      ++++.........++..+.+|....+++.|+++.+|++......+.........++.+++|+++||+ |||+++..+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            4445444445567778888999999999999999999887666666666777788889999999998 999998888766


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+.+.......                    .....+.+..++.+++.+...+..++++.|.+|.+.      |++
T Consensus       326 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~t  379 (438)
T PRK09952        326 GTLSAFPFFMALEAQ--------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYS  379 (438)
T ss_pred             HHHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHH
Confidence            555444333221101                    113334455566678878778888999999999988      998


Q ss_pred             HHHH-HHHHHHhhHHHHHHHHHHhhccc--chhhHHHHHHHHHHHHHHHHHHc
Q 008020          186 FFSR-FFFVISTGTLMAVTVLVYIQDEV--GRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~--g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      +.++ ++....+|+.++|.+.+++.+..  +|..++.+..++.+++.+..+..
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            8888 44445689999999999997744  47777776666666655554443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.7e-13  Score=128.85  Aligned_cols=137  Identities=17%  Similarity=0.281  Sum_probs=113.1

Q ss_pred             HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008020           50 VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQA  129 (581)
Q Consensus        50 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (581)
                      .-+..+.+.+.+.+.++...+.+.++....+.+.++|++.||.+|-|..-++-.....+|-++++...-           
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----------  132 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----------  132 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence            336678888889998999999999999999999999999999989888766666666777776654311           


Q ss_pred             CccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 008020          130 TDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ  209 (581)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~  209 (581)
                                ....|....+|++.|+|.-....+.+.+...++..++      ...+++++.....+|+.+-..+.+++.
T Consensus       133 ----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  133 ----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             ----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHH
Confidence                      1237889999999999988888899999999999999      999999998888899887777777776


Q ss_pred             cccc
Q 008020          210 DEVG  213 (581)
Q Consensus       210 ~~~g  213 (581)
                      +..+
T Consensus       197 ~~~~  200 (459)
T KOG4686|consen  197 DTMG  200 (459)
T ss_pred             HHHH
Confidence            6543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.41  E-value=3.6e-12  Score=132.64  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=136.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+......++..........+.+.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            455555555666666555666677775 46889988999999999999999999999999998 9999999988888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++......                      .....+++..++.+++.+...+..++++.|.+|+++      |++++++
T Consensus       284 ~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~  335 (377)
T TIGR00890       284 MAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGF  335 (377)
T ss_pred             HHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHH
Confidence            776655421                      012334455677788888888888889999999988      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAI  229 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~  229 (581)
                      .+...++|..++|.+.|++.++.||+..|.+.+++.++++
T Consensus       336 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       336 LYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999988776655543

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.39  E-value=2.4e-11  Score=123.74  Aligned_cols=386  Identities=11%  Similarity=-0.022  Sum_probs=213.7

Q ss_pred             HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      .+..|..+.++ +...+.|...+|++.+....+++-|+.||+ |-|..++++.++..+|..+=..+. .|.+.       
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~-------  135 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP-------  135 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc-------
Confidence            35567777778 777788999999999999999999999999 999999999999999998776652 23211       


Q ss_pred             ccccccCCchhhH--HHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          131 DITKCQHASGIQM--GVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       131 ~~~~~~~~~~~~~--~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                                ...  .+.+++..+.+.++-.......-+.+-+|++++      |..+...-.++..+|..+|.++...+
T Consensus       136 ----------~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  136 ----------PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             ----------ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhcccee
Confidence                      122  366778888888777777776777888999998      99888887777777887777776666


Q ss_pred             hccc------chhh--HHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCcc
Q 008020          209 QDEV------GRSW--GYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPE  280 (581)
Q Consensus       209 ~~~~------g~~~--~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~  280 (581)
                      ..+.      .|..  .|+...++..+.+....+..++.++.+|+.+....              +              
T Consensus       200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~--------------~--------------  251 (480)
T KOG2563|consen  200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL--------------Q--------------  251 (480)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh--------------h--------------
Confidence            5433      3433  23322222222222222323222222222111000              0              


Q ss_pred             ccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecccc
Q 008020          281 ESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTM  360 (581)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (581)
                              +.++....                       .+-..+++.++..+........|+..+..+...+...  +.
T Consensus       252 --------~~~f~~si-----------------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s--gY  298 (480)
T KOG2563|consen  252 --------DASFPKSI-----------------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPS--GY  298 (480)
T ss_pred             --------cCcHHHHH-----------------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccc--cC
Confidence                    00000000                       0001122233333333344444444444332111111  11


Q ss_pred             ccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008020          361 QRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKAN  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~  440 (581)
                      .      +...+.......+..++.+.+.+.+.||. |+.        +..+..-.....++...+......        
T Consensus       299 ~------~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~f--------k~~~~v~~~~~~v~~~~l~~~t~~--------  355 (480)
T KOG2563|consen  299 E------GVFAGYIGALMIVAGMLGALASGIIADKT-KKF--------KLTTLVLYLFALVGTLMLLTCTLF--------  355 (480)
T ss_pred             C------ccccchhHHHHHHHHHHHHHHHHhhhhhh-hhH--------HHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence            1      11233344444445555555555555432 111        111222222222221112211110        


Q ss_pred             CCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCC
Q 008020          441 GTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKH  520 (581)
Q Consensus       441 ~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~  520 (581)
                             ....+.+.....+.|++.....|...++..|..=+..-++.+|+.++...+-+.+-.++.+...+       .
T Consensus       356 -------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~-------~  421 (480)
T KOG2563|consen  356 -------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE-------D  421 (480)
T ss_pred             -------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh-------c
Confidence                   11223344455677888888889999999999999999999999987777666665555554432       1


Q ss_pred             CCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccccccCCc
Q 008020          521 GWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQV  565 (581)
Q Consensus       521 ~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  565 (581)
                      .+.+.+.     ...-+..+..+++.+++..++.+.+++++.|+.
T Consensus       422 ~~~~~~~-----~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e~~  461 (480)
T KOG2563|consen  422 LGPPGNT-----FPANIFLTVSALLGAILVAFFRPDYRRLRAEAG  461 (480)
T ss_pred             cCCCCCC-----ccchhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence            1111100     111234455666666777777777777666543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=1.3e-11  Score=130.37  Aligned_cols=173  Identities=13%  Similarity=0.010  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      +.......+..+.+.....+++.|+.+ .|+  .+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~  294 (399)
T PRK05122        219 WPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLL  294 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence            333333444556666777788888764 455  3456666778888889999999999998 999999888887777776


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      +.....                        +.+.+++++++.|++.+...+.......|.+|+++      |+++.++++
T Consensus       295 ~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  344 (399)
T PRK05122        295 LLWLAP------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYS  344 (399)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            665541                        25566778889999998888888888889888887      999999999


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRR  238 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~  238 (581)
                      ...++|..+++.+.|++.+..||+..|++.+++.+++++......++
T Consensus       345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999998999999998877777766665554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.38  E-value=5.9e-12  Score=131.63  Aligned_cols=164  Identities=12%  Similarity=0.115  Sum_probs=132.8

Q ss_pred             CCccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-
Q 008020           18 FPADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR-   95 (581)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-   95 (581)
                      ...++..+.+||++++..+..+.....+..+.+..-+|+++ +.+-+.+..|+++++..++..++.+..|+.+.|. ++ 
T Consensus        23 ~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~  101 (488)
T KOG2325|consen   23 LSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSV  101 (488)
T ss_pred             cccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCc
Confidence            33444557889999999999999999888888888899885 4677888899999999999999999999999998 75 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020           96 YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK  175 (581)
Q Consensus        96 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~  175 (581)
                      |+-++.+.++.++|.++-......|+                   ...++++++|++.|+|.|.. ...-+|+++....+
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~  161 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE  161 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc
Confidence            77888899999999988744433333                   35889999999999998765 56668999988888


Q ss_pred             ChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          176 DEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       176 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                      +      |.++++....+..+|..+||.+...+
T Consensus       162 d------R~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  162 D------RPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             c------hHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            8      88999887777777777777665443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.38  E-value=4.2e-12  Score=132.91  Aligned_cols=172  Identities=18%  Similarity=0.110  Sum_probs=133.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      ++++.++......++.....+....++|.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+.+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~  294 (394)
T TIGR00883       216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL  294 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence            3334567777778888888888889999999889999999999999999999999999999999998 999987765544


Q ss_pred             HHHHH-HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          106 QTFGT-GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       106 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ..+.. .+...... +                    .+.+.+++..++.+++.+...+...+++.|.+|++.      |+
T Consensus       295 ~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~  347 (394)
T TIGR00883       295 AALLAVPLLMALLD-S--------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RY  347 (394)
T ss_pred             HHHHHHHHHHHHhc-C--------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------ee
Confidence            43333 22211110 0                    124556667778888888888999999999999988      99


Q ss_pred             hHHHH-HHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHH
Q 008020          185 YFFSR-FFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICM  225 (581)
Q Consensus       185 ~~~~~-~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~  225 (581)
                      ++++. ++....+|..++|.++|++.++.| |+..++...++.
T Consensus       348 ~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       348 TGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            99987 455667899999999999999888 877766555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=1.3e-11  Score=130.07  Aligned_cols=170  Identities=11%  Similarity=0.095  Sum_probs=133.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.++...+..++.....+++..++|.|+++.+|++..+.+.+.+.+.++..++.+++|+++||+ +||+.+..+..+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4567777777777788888899999999999999999999999999999999999999999998 999988877766555


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ...+....   ++                     .....+..++.|++.+...+...++..+..|++       +++..+
T Consensus       284 ~~~~~~~~---~~---------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g  332 (394)
T PRK03699        284 LMYLFVNT---DD---------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVN  332 (394)
T ss_pred             HHHHHHHc---CC---------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHH
Confidence            54444333   11                     333455566778877777787777777766543       455667


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      +.....++|..++|.+.|++.+..|++..|++..++.+++.+
T Consensus       333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            777788899999999999999999999998877666555544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.36  E-value=7.6e-12  Score=126.55  Aligned_cols=178  Identities=21%  Similarity=0.167  Sum_probs=145.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHH-HHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFL-GRYRTI-AIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~l-~~~~~~~  106 (581)
                      |.+|.+.+.+++....-|++..|.|.|+.|..|++..++++..+.+-.++..+++++||+|||.+ |||... +++++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999988 777644 4555555


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      +++.+....+   |+                   .++.+..+..+++|+-.-+..-.+.....|..|++-      .|++
T Consensus       332 ~~~~~~~w~~---~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA  383 (448)
T COG2271         332 TASLVLYWLA---PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA  383 (448)
T ss_pred             HHHHHHHHcC---CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence            5555555544   22                   235667777777777766666666666789999887      9999


Q ss_pred             HHHHHHHHHh-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVIST-GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       187 ~~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      .|....+..+ |..++....|++.|.+||...|.+..+..+++.+.+..
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            9999998888 88888888899999999999998777766666555444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.35  E-value=2.7e-11  Score=124.52  Aligned_cols=172  Identities=21%  Similarity=0.215  Sum_probs=149.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-TIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~  108 (581)
                      .++......++..........+++.|..+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+..+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            344455556667777777788888999888899999999999999999999999999999998 9999 99999988888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.++.....                        +.+..++..++.+++.+...+...+++.|..|+++      |++.++
T Consensus       255 ~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  304 (352)
T cd06174         255 GLLLLALAP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASG  304 (352)
T ss_pred             HHHHHHHhc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHH
Confidence            888776652                        26678888999999999999999999999999888      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      ..+...++|..++|.+.+.+.+..+|+..|.+..+..+++.+..
T Consensus       305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988999999998887776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.35  E-value=2.2e-11  Score=128.86  Aligned_cols=171  Identities=15%  Similarity=0.015  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~  110 (581)
                      .+.+....++.....+.+..++|.|+.+ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  299 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASL  299 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            3444445555566677777888988875 799999999999999999999999999999998 99999888766655555


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      ++....   +                     +.+.+.+..++.|++.++..+...++..|.+|+++      |+++.++.
T Consensus       300 ~~~~~~---~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  349 (406)
T PRK11551        300 AALAAA---P---------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAA  349 (406)
T ss_pred             HHHHhc---C---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHH
Confidence            544433   1                     14445566667788777778888899999999998      99999999


Q ss_pred             HHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHH
Q 008020          191 FFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +....+|..++|.+.|++.++.+ |...+++...+.+++....+
T Consensus       350 ~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        350 VAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987654 55566655555555444433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.35  E-value=1.6e-11  Score=130.46  Aligned_cols=179  Identities=10%  Similarity=0.018  Sum_probs=135.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--------hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP--------SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAI  101 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~  101 (581)
                      .++..++..++..........+++.|+.+ .|.+        ....+...+...+...++.++.|+++||+ |||+++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~  286 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL  286 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence            34455555555555554555677788764 4433        35668888899999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh
Q 008020          102 FATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  181 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~  181 (581)
                      +.++..++..+......  +                  ....+.+++.+++.|++.+...+....++.|.+|+++     
T Consensus       287 ~~~~~~v~~~l~~~~~~--~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~-----  341 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDP--E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI-----  341 (418)
T ss_pred             HHHHHHHHHHHHHHcCc--c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence            99888877665554311  0                  0124567778899999999888898999999999988     


Q ss_pred             HHhhHHHHHH-HHHHhhHHHHHHHHHHhhcc------cchhhHHHHHHHHHHHHHHHHHHcc
Q 008020          182 QMAYFFSRFF-FVISTGTLMAVTVLVYIQDE------VGRSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       182 ~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~------~g~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                       |++++++.+ ...++|..+||.++|++.++      +||+..|.+.+++.+++.++..+..
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence             999999987 56789999999999999887      4699999877776665554444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.34  E-value=3.2e-11  Score=125.88  Aligned_cols=172  Identities=16%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~  110 (581)
                      .+.+....++...........+|.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.+...+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            33333444444444445566788899889999999999888877777888889999999998 99999888776555444


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      ......                        .+.+.+.+.+.+.+++.|...+....+..|..|+ +      ++++++++
T Consensus       280 ~~~~~~------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~~  328 (375)
T TIGR00899       280 TGLAAD------------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTLY  328 (375)
T ss_pred             HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHHH
Confidence            433333                        1255566777888888888778888888888875 4      66899999


Q ss_pred             HHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          191 FFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +...++|..++|.++|.+.+..||+..|++.+++.+++.+....
T Consensus       329 ~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       329 TNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999899999999888777766655443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.32  E-value=8.5e-11  Score=123.94  Aligned_cols=176  Identities=13%  Similarity=-0.006  Sum_probs=136.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +..|.+....++....++++..++|.|+++ +|++..+.+...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345666677777788888999999999985 799999999999999999999999999999998 999999888877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  187 (581)
                      +.++....   +.                    +...+.  .++.|++.+...+.......+..++ ++      |++.+
T Consensus       283 ~~~~~~~~---~~--------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~  331 (393)
T PRK09705        283 GFCGFIWL---PL--------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLV  331 (393)
T ss_pred             HHHHHHHc---cc--------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHH
Confidence            66554432   11                    111122  2356788888888777777777754 44      89999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      ++.+...+++..++|.+.|++.+..| |...|.+..++.++.+.......+
T Consensus       332 g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T PRK09705        332 AFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP  382 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999876 777787776666665555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.32  E-value=6.2e-11  Score=124.48  Aligned_cols=169  Identities=7%  Similarity=-0.022  Sum_probs=143.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++..++..++.......+..+.+.|+++ +|.+..+.+.+.+...++..+..+++|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            456777777888888888888999999975 899999999999999999999999999999999 999999999999998


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ..++.++.+                        +.+.+++...++|+..|...+....++.+. |+++      |+++.+
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~  331 (382)
T TIGR00902       283 RWAIIGAIE------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQA  331 (382)
T ss_pred             HHHHHHhHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHH
Confidence            888777652                        377788889999999999999999999987 8777      888888


Q ss_pred             HHH-HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          189 RFF-FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       189 ~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +++ ....+|..++|.++|++.++.|+ ..|++.++..++++++
T Consensus       332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            876 46779999999999999999886 5566666555555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.30  E-value=1.4e-10  Score=122.13  Aligned_cols=174  Identities=8%  Similarity=-0.077  Sum_probs=133.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++......++.....++...++++|+.+..|.+..+.+.+.+...++..++.++.|+++||+ |||+.+ .+..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~  283 (390)
T PRK03545        206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVC  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHH
Confidence            345555556666666677777888898888999999999999999999999999999999998 987654 444433333


Q ss_pred             HHHH-HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          110 TGLL-AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      .... ...                        .+...+++..++.|++.+...+...+.+.+..| +.      |+++++
T Consensus       284 ~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g  332 (390)
T PRK03545        284 LLLLLPAA------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA  332 (390)
T ss_pred             HHHHHHHh------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence            3322 222                        125566677778888887777777788888766 46      889999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                      +++...++|..+||.++|++.++.|++..|++.+.+.+++++......
T Consensus       333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            998889999999999999999999999999988877777666655433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.30  E-value=4.2e-11  Score=126.65  Aligned_cols=168  Identities=14%  Similarity=0.015  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChh---hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020           36 GIEICERLSTMGIAVNLVTYLGGTMHLPSA---TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL  112 (581)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~  112 (581)
                      ...++.......+.++++.|+.+..+....   ..+.+.++..++..++.++.|+++||+ |||+.+..+..+..++.++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        226 VTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHH
Confidence            333444445555667778887764432221   234555666778888899999999998 9999999888777766665


Q ss_pred             HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020          113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (581)
                      .....                        +.+.+++.+++.|++.+...+...+++.+..+++.      |++.+++++.
T Consensus       305 ~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  354 (408)
T PRK09874        305 MSFVQ------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS  354 (408)
T ss_pred             HHHhc------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence            55441                        25667788889999999999999999989888888      9999999999


Q ss_pred             HHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ..++|..+||.++|.+.+..||+..|++.+++.+++.+..+.
T Consensus       355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888777766655444

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.29  E-value=1.5e-11  Score=108.46  Aligned_cols=132  Identities=17%  Similarity=0.241  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020           72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY  151 (581)
Q Consensus        72 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (581)
                      +.+.++..++.++.|+++||+ |||+.+..+.....++.++.....                        +.+.+.+.++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~   59 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIARF   59 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHHH
Confidence            445677888999999999998 999999999888888877766552                        2677888899


Q ss_pred             HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +.|++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+.+.+..+|++.|++..+..++..+.
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        60 LQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988      9999999999999999999999999998889999988777665555544


Q ss_pred             HHH
Q 008020          232 FLS  234 (581)
Q Consensus       232 ~~~  234 (581)
                      ...
T Consensus       134 ~~~  136 (141)
T TIGR00880       134 LAF  136 (141)
T ss_pred             Hhh
Confidence            443

>PRK12382 putative transporter; Provisional

Probab=99.29  E-value=7.5e-11  Score=124.22  Aligned_cols=165  Identities=14%  Similarity=0.097  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Q 008020           36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAI  115 (581)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~  115 (581)
                      ...++....+..+..+++.|+++ .|++  +.+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++...
T Consensus       223 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        223 LGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHH
Confidence            33344455666677778888764 4554  345566677778889999999999998 9999999988888887776655


Q ss_pred             hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHH
Q 008020          116 STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVIS  195 (581)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  195 (581)
                      .   ++                     .+.+++..++.|++.+...+...+...|.+|+++      |++++++++...+
T Consensus       299 ~---~~---------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (392)
T PRK12382        299 A---PT---------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD  348 (392)
T ss_pred             c---cc---------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence            4   11                     5556778888899988888888888899999888      9999999999999


Q ss_pred             hhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          196 TGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       196 ~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +|..++|.+.|++.++.||+..|.+.+++.+++.+..+.
T Consensus       349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999888777766655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.28  E-value=7.9e-11  Score=131.82  Aligned_cols=132  Identities=11%  Similarity=0.036  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH
Q 008020           71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL  150 (581)
Q Consensus        71 ~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  150 (581)
                      ..+..++..++.+++|+++||+ |||+++.++.++.+++.++.++..+                        ...+++.+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s------------------------~~~ll~~~  655 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS------------------------ESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc------------------------HHHHHHHH
Confidence            4456688889999999999998 9999999999888888877766521                        44466667


Q ss_pred             HHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020          151 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       151 ~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      ++.+++.++..+...++++|++|.+.      |++++++.+....+|+++||.+++++.+. +...+|++.+++.+++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            77777777788889999999999998      99999999999999999999999987663 456677777666665555


Q ss_pred             HHHH
Q 008020          231 IFLS  234 (581)
Q Consensus       231 ~~~~  234 (581)
                      +..+
T Consensus       729 l~~~  732 (742)
T TIGR01299       729 LALK  732 (742)
T ss_pred             HHHh
Confidence            4443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.27  E-value=1.7e-10  Score=121.06  Aligned_cols=159  Identities=13%  Similarity=0.192  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhc
Q 008020           39 ICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTK  118 (581)
Q Consensus        39 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~  118 (581)
                      +...+.+.....++|.|+++ .|.+..+.+.+.+...++..++.++.|+++||+ |||+++..+..+..++..... .  
T Consensus       210 ~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~--  284 (381)
T PRK03633        210 IISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S--  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h--
Confidence            33334444455678888875 699999999999999999999999999999998 999999888777776654432 1  


Q ss_pred             CCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhH
Q 008020          119 QPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGT  198 (581)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  198 (581)
                                              .......+.+.+++.+...|...+.+.|..|+++      ++...+.++...++|.
T Consensus       285 ------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~  334 (381)
T PRK03633        285 ------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGS  334 (381)
T ss_pred             ------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHH
Confidence                                    1123345566777767778888898999988776      7777778788889999


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          199 LMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       199 ~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      .+||.++|++.+++||++.|.+.+.+.++.....
T Consensus       335 ~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        335 LLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988776665554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.27  E-value=5.6e-11  Score=126.33  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020           45 TMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRP  124 (581)
Q Consensus        45 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  124 (581)
                      ..++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+....+++.++..+.   +    
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~---~----  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM---P----  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc---c----
Confidence            355667889999988999999999999999999999999999999997 88888888877777776665543   1    


Q ss_pred             CCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020          125 PPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV  204 (581)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  204 (581)
                                       +.....++.++.|++.+...+...+++.|..|++.      |++++++++...++|..+||.+
T Consensus       311 -----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l  367 (417)
T PRK10489        311 -----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAAL  367 (417)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHH
Confidence                             25556677778888888777778889999999888      9999999999999999999999


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          205 LVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       205 ~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      .|++.+..|++..+++.+++.++..++.
T Consensus       368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        368 LGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            9999999898888876665544433333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.27  E-value=7.4e-11  Score=126.83  Aligned_cols=176  Identities=16%  Similarity=0.047  Sum_probs=123.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--hHHH-HHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR--YRTI-AIFATV  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~l-~~~~~~  105 (581)
                      +.+|...+..++.....++...++|.|+++..|++..+.+.....+.++..++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4577788888888888888999999999988999999999988888999999999999999997 43  3322 222223


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+.+.+...                      .+.....+..++.|.+..........+..|.+|++.      |++
T Consensus       332 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~  383 (452)
T PRK11273        332 VTIATIVYWLNPA----------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  383 (452)
T ss_pred             HHHHHHHHHHhcc----------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence            3333332222100                      113333344444444333222333455679999988      999


Q ss_pred             HHHHHHHHHHhhHHH-HHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLM-AVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ++++.+...++|+.+ +|.+.|++.++.||+..|++..+..+++++...
T Consensus       384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            999998888888654 799999999999999999877766666554444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.27  E-value=3.8e-09  Score=112.03  Aligned_cols=355  Identities=14%  Similarity=0.099  Sum_probs=202.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhh-hhhHHHHH----HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSAT-SANIVTDF----MGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~~~~~~----~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .+.+.+.....+....+...+...+.+.+... .+......    .+...+..+..|.++||+ |||..+........+.
T Consensus        27 ~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~  105 (463)
T KOG2816|consen   27 LFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILP  105 (463)
T ss_pred             HHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHh
Confidence            33333333333333455555655555443332 22223333    567778888999999999 9999999999888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHH--hccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIAL--GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~gl--g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      .+...+.                          .+++++   +.++  +.+.......++++|...+++      |...+
T Consensus       106 ~~~~~~~--------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~  150 (463)
T KOG2816|consen  106 ALCLLFQ--------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSI  150 (463)
T ss_pred             HHHHHHH--------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHH
Confidence            7766654                          222322   3332  334566788899999999998      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCC-hhHHHHHHHHHHHhhcccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGS-PIVHICQVVVAARKKRKVE  266 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  266 (581)
                      ++.+.....+..++|..++++.+..|...+|.++.+..++..+...+..++...++.+.. +..              ..
T Consensus       151 gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~--------------~~  216 (463)
T KOG2816|consen  151 GLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR--------------EL  216 (463)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc--------------cc
Confidence            999999999999999999999999999999999998888877665554443322221110 000              00


Q ss_pred             cCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhh
Q 008020          267 LPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTY  346 (581)
Q Consensus       267 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  346 (581)
                      .|.+             .+...                      ...+++....  ....|..+.++...  .....--.
T Consensus       217 ~~~~-------------~~~~~----------------------~~~~~~~~~~--~~~~r~~l~l~l~~--~~~~~~~~  257 (463)
T KOG2816|consen  217 TPGS-------------LDSSH----------------------VADAFQSLTK--VGPDRLLLLLLLVA--FLSSLPEA  257 (463)
T ss_pred             CCCc-------------ccchh----------------------hhhhhhhhcc--cCCCccchHHHHHH--HHHHHHHh
Confidence            0000             00000                      0000000000  01112222211111  11111111


Q ss_pred             cccc-ceeeeeccccccccccccccchhhh----hhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHH
Q 008020          347 AQMI-TFSVEQATTMQRSIGNFKIPAASLT----VFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL  421 (581)
Q Consensus       347 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i  421 (581)
                      .... ..+.+    ....++.-....+.+.    ....+..++..|+..+..   ..|          +.+.+|+....+
T Consensus       258 ~~~~~~~~~y----l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l---~~~----------~~i~lGl~~~~~  320 (463)
T KOG2816|consen  258 GGASDVLLLY----LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL---GEK----------RLISLGLLSEFL  320 (463)
T ss_pred             cCceeEEEEE----EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhh----------hHhhHHHHHHHH
Confidence            1111 11111    1111111011112122    222333333333332221   122          237788888888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHH
Q 008020          422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFF  501 (581)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~  501 (581)
                      ..++.++.+                   ..|... .............|...+++...+.++.+|+.+++......+.+.
T Consensus       321 ~~~~~af~~-------------------~~w~~~-~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~  380 (463)
T KOG2816|consen  321 QLLLFAFAT-------------------ETWMMF-AAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV  380 (463)
T ss_pred             HHHHHHHhc-------------------cchhhh-HHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhh
Confidence            888888763                   222222 223344455677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 008020          502 FSSLLVSIVKAATG  515 (581)
Q Consensus       502 ~g~~~~~~i~~~~~  515 (581)
                      +++.+.+.+...+.
T Consensus       381 ~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  381 VSPALYGNIFALTL  394 (463)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999998876664

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=5.9e-10  Score=113.40  Aligned_cols=78  Identities=12%  Similarity=-0.090  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---------
Q 008020          141 IQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE---------  211 (581)
Q Consensus       141 ~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---------  211 (581)
                      .++..++++.++.|.|.+...+..++++++..++++      +.+.+++...+..+|..++|++++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            458889999999999999999999999999999888      99999999999999999999999977631         


Q ss_pred             -------cchhhHHHHHHHH
Q 008020          212 -------VGRSWGYGICSIC  224 (581)
Q Consensus       212 -------~g~~~~f~i~~~~  224 (581)
                             ..|+++|++.++.
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~  101 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGA  101 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHH
Confidence                   3688888844443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.26  E-value=1.5e-10  Score=121.04  Aligned_cols=176  Identities=13%  Similarity=-0.029  Sum_probs=129.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-HHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT-IAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~~  107 (581)
                      |.++...+..++.....+.+..+++.|+++.+|.+..+.+.+.+...++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4567777888888888888999999999999999999999999999999999999999999998 88861 111111111


Q ss_pred             HHH---HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          108 FGT---GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       108 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ++.   .+.....  +.                  ............+.+.+.+ ..+...+++.|.+|+++      |+
T Consensus       294 ~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       294 IAGLVLSLLMFAT--NY------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHHh--cc------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HH
Confidence            111   1111110  00                  0112333333333344434 67899999999999998      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIF  232 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~  232 (581)
                      +++++.+...++|..++|.+.|++.+..| |+..|.+.++..+++.+..
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888 9999887776666555443

>TIGR00897 2A0118 polyol permease family

Probab=99.26  E-value=2.6e-10  Score=120.67  Aligned_cols=177  Identities=14%  Similarity=0.085  Sum_probs=131.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-HHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA-IFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~~  107 (581)
                      |.++...+..++....+++...++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            45667777788888889999999999986 5899999999988999999999999999999998 9888764 3333333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.+.+.......                   ..+.+..++..++.|++.+...+. .+...|.. +++      |++++
T Consensus       300 ~~~~~l~~~~~~~-------------------~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~------~g~~~  352 (402)
T TIGR00897       300 IFTLALYYIPQHF-------------------GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKH------KGAAM  352 (402)
T ss_pred             HHHHHHHHHHHcc-------------------CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cch------hHHHH
Confidence            3333332221000                   012455566777778877765443 45566654 446      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ++.+...++|..++|.+++.+.+..||+..|++.+++.+++.++..+
T Consensus       353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=3.3e-09  Score=107.86  Aligned_cols=129  Identities=15%  Similarity=0.058  Sum_probs=90.3

Q ss_pred             HHHHHHHhccccCC---Ch----hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-HHHHHHHHHHHHHHHHHHhhcCC
Q 008020           49 AVNLVTYLGGTMHL---PS----ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-TIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        49 ~~~l~~yl~~~l~~---~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      ..+.|+|+++..+-   +.    +-.+...++..+...+..|+.|.++|.. |+|| .+....++..+.+.++.+...  
T Consensus        35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            35567777765443   33    2344556677778888889999999998 7655 555566666666666666621  


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i  200 (581)
                                         ++..+...+...+..++..+......+++.|..++++      .++..+.-+....+|+.+
T Consensus       112 -------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i  166 (438)
T COG2270         112 -------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVI  166 (438)
T ss_pred             -------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchH
Confidence                               1236666777778889999999999999999999988      666666655566777766


Q ss_pred             HHHHH
Q 008020          201 AVTVL  205 (581)
Q Consensus       201 ~~~~~  205 (581)
                      .-+++
T Consensus       167 ~li~~  171 (438)
T COG2270         167 LLIFV  171 (438)
T ss_pred             HHHHH
Confidence            65443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.24  E-value=1.9e-10  Score=125.13  Aligned_cols=148  Identities=18%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020           47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP  126 (581)
Q Consensus        47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ....++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..++.++......        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4567899999889999999999999999999999999999999998 9999988877665555443332211        


Q ss_pred             CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                                    ...+...+..++.+....+..+..++++.|.+|++.      |++.+++++...++|..+||.++|
T Consensus       364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence                          113333333444333333345677788899999888      999999999999999999999999


Q ss_pred             HhhcccchhhHHHHHHH
Q 008020          207 YIQDEVGRSWGYGICSI  223 (581)
Q Consensus       207 ~l~~~~g~~~~f~i~~~  223 (581)
                      ++.+.+||+..+.+...
T Consensus       424 ~l~~~~g~~~~~~~~~~  440 (496)
T PRK03893        424 LIAQRLDLGTALASLSF  440 (496)
T ss_pred             HHhccCChHHHHHHHHH
Confidence            99999999887764443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.24  E-value=1.5e-10  Score=123.80  Aligned_cols=153  Identities=15%  Similarity=0.133  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH-HH
Q 008020           35 LGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG-LL  113 (581)
Q Consensus        35 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~-~~  113 (581)
                      ....++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+++..+....++... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444556677888889999999988999999999888888899999999999999998 999988776554333221 11


Q ss_pred             HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH-
Q 008020          114 AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF-  192 (581)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-  192 (581)
                      ......+                     ......+..++.+++.+...+...++..|.+|++.      |++++++.+. 
T Consensus       323 ~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~  375 (434)
T PRK15075        323 SWLVAAP---------------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL  375 (434)
T ss_pred             HHHHcCC---------------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence            1111101                     12223333444556666666667788999999998      9999998544 


Q ss_pred             HHHhhHHHHHHHHHHhhcccchh
Q 008020          193 VISTGTLMAVTVLVYIQDEVGRS  215 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~~~g~~  215 (581)
                      ...+++.++|.+.|++.+..|++
T Consensus       376 ~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        376 ATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHhhhHHHHHHHHHHhcCCc
Confidence            34456778999999999988864

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.24  E-value=2.4e-10  Score=122.12  Aligned_cols=174  Identities=15%  Similarity=0.064  Sum_probs=112.3

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020           32 ALSLGI-EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT  110 (581)
Q Consensus        32 ~~~~~~-~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~  110 (581)
                      +..... .++....+|++..++|.|+.+.+|++..+.+...+...+...++.++.|+++||+ |||+.+.++.++..+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~  323 (432)
T PRK10406        245 FIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFT  323 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            433333 3445778889999999999988999999998888888888888899999999998 99998877655443333


Q ss_pred             HHHHH-hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          111 GLLAI-STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       111 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      ..... .....                     +....+....+...+.+...+....+..|.+|++.      |++++++
T Consensus       324 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~  376 (432)
T PRK10406        324 VPILSALQNVS---------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGL  376 (432)
T ss_pred             HHHHHHHHcCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhH
Confidence            22211 11100                     11211111222223333334556778899999999      9999999


Q ss_pred             HHHHHH-hhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008020          190 FFFVIS-TGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       190 ~~~~~~-~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      .+...+ +++..+|.+.+++. ..| |...+++..+..+++.+..++
T Consensus       377 ~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        377 SYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            665544 33445888888664 345 555555555555555444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.23  E-value=9.2e-11  Score=124.81  Aligned_cols=172  Identities=15%  Similarity=0.035  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGT---MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++.+.+..++....+......++.|+.+.   .+.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~  303 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA  303 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence            34334333344444444444567776543   356667888999999999999999999999998 99999998888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.++..++.                        +.+.+.+.+.+.+++.+...+....++.|.+|++.      |++..
T Consensus       304 ~~~~l~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~  353 (420)
T PRK09528        304 VRIIGSGFAT------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIY  353 (420)
T ss_pred             HHHHHHHhcc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeee
Confidence            8777776552                        25667788888888888877777888899999887      87776


Q ss_pred             HH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          188 SR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       188 ~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +. ++...++|..++|.+.|++.+..||+..|.+.+++.++..++..
T Consensus       354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            65 66778899999999999999999999999976666555444433

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.23  E-value=2.5e-10  Score=122.09  Aligned_cols=177  Identities=14%  Similarity=0.031  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--hHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGR--YRTIAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--r~~l~~~~~~~  106 (581)
                      +.+|.+.+..++....++++..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+.+|  ++......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            3567677777777777778888999999888999999999999999999999999999999997322  22222221111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .+....+...   +.                   .+.....+..++.|++.............|.+|++.      |+++
T Consensus       323 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  374 (434)
T PRK11663        323 LLSVGSLWLM---PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAA  374 (434)
T ss_pred             HHHHHHHHHc---cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhH
Confidence            1111111111   11                   012222233333333322222233455688888887      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      .++.+...++|..++|.+.|++.+..||+..|++.+++.+++.+...
T Consensus       375 ~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        375 TGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877776655544433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.22  E-value=1.5e-10  Score=122.01  Aligned_cols=158  Identities=16%  Similarity=0.094  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020           33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL  112 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~  112 (581)
                      .+.....+.....+....++|.|+.+++|++..+.+.+.+...++..++.++.|+++||+ |||+.+.++..+..+....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  320 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIP  320 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHH
Confidence            334444445555666777889999989999999999999999999999999999999998 9999988887655333222


Q ss_pred             HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020          113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (581)
                      ....   .                    .+.+.+.+..++.++..+...+..++++.|.+|+++      |++++++.+.
T Consensus       321 ~~~~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~  371 (405)
T TIGR00891       321 VFAI---G--------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQ  371 (405)
T ss_pred             HHHh---C--------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHH
Confidence            2111   0                    114445555566666666777888899999999988      9999999999


Q ss_pred             HHHhhHHHHHHHHHHhhcccc-hhhHHHH
Q 008020          193 VISTGTLMAVTVLVYIQDEVG-RSWGYGI  220 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~~~g-~~~~f~i  220 (581)
                      ..++|..++|.+.|++.++.| |+..+..
T Consensus       372 ~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       372 LGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999999988 8776654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.21  E-value=4.7e-10  Score=121.71  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHH-HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVT-DFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .|......++.....+....+.++|+.+.+|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++.+++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444456666666666778888988889999999999874 55689999999999999998 9999887766655554


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+........+                    .+...+.+..++..+..|...+...++..+..+++.      +++.+++
T Consensus       303 ~l~~~~l~~~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl  356 (491)
T PRK11010        303 NAGYWLLSITD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFAL  356 (491)
T ss_pred             HHHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHH
Confidence            43322111101                    113334444555454555555667788888888888      8888999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      .+...++|..+++.+.|++.+..||+..|.+..++.+.+++.....++
T Consensus       357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998899999888889999999999999999888887777766655543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.19  E-value=7.7e-10  Score=118.46  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=151.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY--RTIAIFATV  105 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~~~  105 (581)
                      .|.+..-++..++.+-+..++......|.++++|++..+...+..+..+.+.++++++|++.||+ |.|  +++..++++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~  358 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLIL  358 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence            35677788888888889999999999999999999999999999999999999999999999999 998  888888776


Q ss_pred             HHHHHHHHHH--hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          106 QTFGTGLLAI--STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       106 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ..+..+...+  ....                  ....+.+.+++.-++.|+..|...+..-++.+++.|+++      .
T Consensus       359 ~~~i~~~g~~G~~~~~------------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e  414 (477)
T PF11700_consen  359 WIIIPLYGLFGFWPSF------------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------E  414 (477)
T ss_pred             HHHHHHHHHHHhhhcc------------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------h
Confidence            6443332222  1100                  001236778888889999999999999999999999998      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      +..++++.+.....+.+||++.|.+.+..| .|..+....++.+++++++...
T Consensus       415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999887 7888877776777776666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.16  E-value=3.7e-10  Score=121.43  Aligned_cols=172  Identities=12%  Similarity=0.007  Sum_probs=135.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc-ccchHHHHHHH--HH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF-LGRYRTIAIFA--TV  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grr~~l~~~~--~~  105 (581)
                      |.++..+...++..++++....+++.|+++ +|++..+.+.+.+...++..++.+++|+++||. .++|+...++.  +.
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            456666777777888888888899999864 799999999999999999999999999999984 13444343332  22


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+++...                        .+.+.+++.+++.|++.++..++..+++.|.+|+++      +++
T Consensus       320 ~~l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~  369 (455)
T TIGR00892       320 NGLTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS  369 (455)
T ss_pred             HHHHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence            23333333333                        126667888999999999999999999999999888      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEV-GRSWGYGICSICMFTAILI  231 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~f~i~~~~~~~~~~~  231 (581)
                      .+++++...++|..+||.++|++.+.. +|++.|++.+++.+++.+.
T Consensus       370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999998877 4999999887766655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.16  E-value=2.2e-08  Score=106.57  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             HHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc--cc--chHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 008020           52 LVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF--LG--RYRTIAIFATVQTFGTGLLAISTKQPQLRPPPC  127 (581)
Q Consensus        52 l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (581)
                      ...|+++++|+++++.....+...+...+-+ +.|.++|-+  .|  ||+-++++.++..++.+.++.....        
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~--------   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS--------   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            4467889999999998887777776666554 559999986  23  4445556666665555544443110        


Q ss_pred             CCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH
Q 008020          128 QATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVY  207 (581)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  207 (581)
                                  ..+.....+..++..+|......+.-+++.|...++...    |+...++.+.+..+|++++..++|.
T Consensus        83 ------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~  146 (433)
T PF03092_consen   83 ------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGP  146 (433)
T ss_pred             ------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                        112444556667788999999999999999998766533    7788888888899999999999999


Q ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          208 IQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       208 l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +.+..+++..|.+..++.++..+...+
T Consensus       147 l~~~~~~~~~f~i~~~~~~l~~~~~~~  173 (433)
T PF03092_consen  147 LLDSFGPQGVFLISAALPLLMLIVALF  173 (433)
T ss_pred             hhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence            999999999998887665555444333

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.15  E-value=2.1e-09  Score=110.24  Aligned_cols=177  Identities=14%  Similarity=0.105  Sum_probs=143.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.++...+..++...+.|...+++.+++++..|++....+++...+.++..++.+++|+++||  +.|+.+.....+.++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            467888888999999999999999999999999999999999999999999999999999999  788888888777777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ..+.+.+..+                       +.+...+..++.|++.+........-.++ ..++.      ++.+.+
T Consensus       289 ~~l~l~~~~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~s  338 (394)
T COG2814         289 ALLALTFTGA-----------------------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGS  338 (394)
T ss_pred             HHHHHHHhcc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHH
Confidence            7766655421                       24555555555666655544444444555 22455      888999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccc
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      ++....|+|..+|..++|.+.+++|+....++++++.++++...+...+
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999888888777665443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.14  E-value=1e-09  Score=117.88  Aligned_cols=167  Identities=11%  Similarity=-0.014  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020           47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP  126 (581)
Q Consensus        47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      .+..+.+ +..+++|++..+.+.......++..++.+++|+++||+ |||+.+.++.++..++.++..+......     
T Consensus       302 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  374 (481)
T TIGR00879       302 AIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-----  374 (481)
T ss_pred             ehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence            3344444 44457799998888888899999999999999999998 9999999988877777666653211000     


Q ss_pred             CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                              ...+.......+....++.+.......+....+..|.+|++.      |+++.++.+...++|..++|.+.+
T Consensus       375 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~  440 (481)
T TIGR00879       375 --------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFP  440 (481)
T ss_pred             --------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    000000112222222222222222334667777899999888      999999999999999999999999


Q ss_pred             HhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          207 YIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       207 ~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ++.++.+|++.|++.+++.+++.++..+
T Consensus       441 ~~~~~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       441 TMLESIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             HHHHhcCccceehhHHHHHHHHHHHHhe
Confidence            9988889999988777665655554443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.14  E-value=6.2e-10  Score=119.17  Aligned_cols=176  Identities=15%  Similarity=0.016  Sum_probs=120.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.+|...+..++.....+++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ |+++....+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3566776777777778888999999999988999999999999999999999999999999998 754422233222211


Q ss_pred             ---HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          109 ---GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       109 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                         +.+.+...   +.                   .+.+...+..++.|.+..+..........|.+|++.      |++
T Consensus       330 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       330 VTIAVIVYWMN---PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHHHhc---CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence               11111111   10                   012223333344444332222222345678899888      999


Q ss_pred             HHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       186 ~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +.++.+...++|+ .++|.+.|.+.++.||...|++..+..+++.+..+
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            9999988878775 68999999999999999998876665555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.12  E-value=2.4e-09  Score=112.42  Aligned_cols=169  Identities=8%  Similarity=0.013  Sum_probs=132.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++...+..++...........++.|+. +.|++..+.+.+.+...++..+..++.|++.||+ |+|+++..+.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45676777777777777777788889986 5899999999999988889999999999999998 999999998888887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.++....                        ++.+.+++..++.|++.+...+....+..+. ++++      +++..+
T Consensus       283 ~~~~~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  331 (382)
T PRK11128        283 RWGLMGST------------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA  331 (382)
T ss_pred             HHHHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence            77666544                        2367778889999999888888888887775 4444      677788


Q ss_pred             HHH-HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          189 RFF-FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       189 ~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      .++ ....+|..+||.++|.+.+..|+. .|++.+++.++++.+
T Consensus       332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~~  374 (382)
T PRK11128        332 LYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH
Confidence            765 456678899999999999998874 555555554544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.12  E-value=4.7e-10  Score=116.75  Aligned_cols=162  Identities=14%  Similarity=0.062  Sum_probs=119.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH--HH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT--VQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~--~~  106 (581)
                      +.++.+.+..++.....+.+..+++.|+.+.+|++..+.+...+...++..++.++.|+++||+.+||+.......  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4567777777777888888888999999999999999999999999999999999999999986244443322211  11


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++.......   +.                   .+.....+..++.|+......+....+..|.+|++.      |+++
T Consensus       296 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  347 (379)
T TIGR00881       296 IVSLLVYWLN---PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA  347 (379)
T ss_pred             HHHHHHHhcC---cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence            1121111111   10                   123344555556666555555666778899999998      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGY  218 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f  218 (581)
                      .++.+...++|..++|.+.|++.+..||++.|
T Consensus       348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999998754

>TIGR01272 gluP glucose/galactose transporter

Probab=99.12  E-value=1.9e-09  Score=109.64  Aligned_cols=164  Identities=11%  Similarity=0.074  Sum_probs=125.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      +..+...+..++....--++..+++.|+.+  .+|++..+.+...+.+..+..++.+++++++||+ |+||++.++..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            445555566666655666778899999975  4799999999999999999999999999999998 9999998888777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      +++.++....   +.                     .. ...+..+.|++.+..+|...+...+.+|++.       +++
T Consensus       219 ~~~~~l~~~~---~~---------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~a  266 (310)
T TIGR01272       219 VLLSIGAALT---HG---------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQG  266 (310)
T ss_pred             HHHHHHHHHc---CC---------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhh
Confidence            7766555433   11                     11 2234557899999999999999988887643       233


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMF  226 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~  226 (581)
                      .++. ....+|+.+.|.+.|.+.|..|.+.+|++..++.+
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~  305 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYL  305 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            3443 45679999999999999998998888886655533

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10504 putative transporter; Provisional

Probab=99.11  E-value=1.9e-09  Score=116.48  Aligned_cols=158  Identities=11%  Similarity=0.048  Sum_probs=124.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+...+...++...++.......|.|++..+|.+..+.+.......++..++.++.|+++||+ |||+++..+.++..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3456666667777777666666778888878899999999998888888888889999999999 999999988887777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.++..+...  .                   .....+.+..++.|++.+...+..+.+..+.+|++.      ++.+++
T Consensus       340 ~~~~~~~~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  392 (471)
T PRK10504        340 VSLLFMLVAL--L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS  392 (471)
T ss_pred             HHHHHHhccc--c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence            7665554311  0                   113334455667788888888888899999999888      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      +.+....+|..+|+.++|.+.+..|+
T Consensus       393 ~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        393 LLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988665554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=1.2e-09  Score=104.37  Aligned_cols=160  Identities=15%  Similarity=0.120  Sum_probs=132.7

Q ss_pred             cccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Q 008020           21 DRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA  100 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~  100 (581)
                      ........+.+|.+.++-++.....+=+...-+.+.++.+|+|+.+++.+.+..+..+.+..++.|.++||+ ||+-..+
T Consensus       256 Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv  334 (459)
T KOG4686|consen  256 LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWV  334 (459)
T ss_pred             cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhH
Confidence            334455567899999998888888777777778899999999999999999999999999999999999999 9997776


Q ss_pred             HHHHH-HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH
Q 008020          101 IFATV-QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE  179 (581)
Q Consensus       101 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      .+..+ ...+...+.++                          .+.-+++..++|+.........++.++-..|+++   
T Consensus       335 ~~a~~~tl~~H~~l~Ft--------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q---  385 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFT--------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ---  385 (459)
T ss_pred             HHHHHHHHHHhhhHHhh--------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH---
Confidence            66544 44455555554                          3335677888888888877778899999999998   


Q ss_pred             HhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc
Q 008020          180 KTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG  213 (581)
Q Consensus       180 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g  213 (581)
                         .|++++..+...|+|-.+.|+++|.+.+.-|
T Consensus       386 ---LGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  386 ---LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             ---hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence               9999999999999999999999999988765

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.10  E-value=1.4e-09  Score=115.56  Aligned_cols=165  Identities=10%  Similarity=-0.017  Sum_probs=118.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHH-HHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRT-IAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~  106 (581)
                      +.+|+..+..++....++++..++|.|+++ ..|.+..+++.......++..++.+++|+++||+ +||+. +....+..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            356778888888888999999999999986 3577888899999999999999999999999998 87764 33333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++.. .....  +.                     .....++..+.++|.....+.......|.+|++.      |+++
T Consensus       321 ~~~~~-~~~~~--~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a  370 (412)
T TIGR02332       321 AAGWL-LASAT--DH---------------------NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA  370 (412)
T ss_pred             HHHHH-HHHhc--CC---------------------HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence            33322 22110  11                     1111222223333333333444455567788887      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSIC  224 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~  224 (581)
                      +++.+...++|..++|.+.|.+.+..| |++.|++..++
T Consensus       371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999999999875 99988766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.10  E-value=4.9e-09  Score=111.02  Aligned_cols=172  Identities=11%  Similarity=-0.136  Sum_probs=129.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++...+...+.....+......|.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            455555555566666666667788888888999999999888878888899999999999998 9999999988887777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++.........                   .+...+.++.++.++|.+...+......... ++++      |++..+.
T Consensus       295 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~  348 (406)
T PRK15402        295 LLLAALATVISS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA  348 (406)
T ss_pred             HHHHHHHHHccc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence            776655421110                   1255567788888999888777666655443 3466      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTA  228 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~  228 (581)
                      ++....+|..+|+.+.+.+.+..++....+...+..++.
T Consensus       349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999999999988777666555554444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=2.9e-09  Score=112.09  Aligned_cols=175  Identities=16%  Similarity=0.040  Sum_probs=127.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      ..+..+...++...+......+.+.|+.+ .|++.++.+.+..... ....++.+++|++.||+ |+|+.+..+..+..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            45556666677777777777788889875 7999999999888775 46677889999999998 999999887766533


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  187 (581)
                      ..+..........                  ......++....+.+++.|...+...+...+..++ +.      +++.+
T Consensus       287 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  342 (390)
T TIGR02718       287 LALLWFAQAAFWL------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV  342 (390)
T ss_pred             HHHHHHHHHHccc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence            3332221111000                  01133344444555666677777777777777765 66      89999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      ++.+...++|..+||.++|++.+..||+..|.+..++.+++..
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887766655543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.08  E-value=1.2e-09  Score=116.84  Aligned_cols=161  Identities=15%  Similarity=0.049  Sum_probs=123.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++..++..++.....+......+.|.+..++ +..+.+.+.....++..++.+++|+++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            456667777777777777666666666666666 556677777788899999999999999998 999999999888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH-HhHHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~  187 (581)
                      +.++..+..                       .+.+.+++..++.+++.+...+...++++|..+.++... ...+|.++
T Consensus       300 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  356 (437)
T TIGR00792       300 GYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY  356 (437)
T ss_pred             HHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence            776655431                       124556677778899999888999999999877432111 11278889


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      ++++....+|..+++.+.|++.+..||
T Consensus       357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       357 SVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999998876666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.08  E-value=1.6e-08  Score=110.47  Aligned_cols=206  Identities=13%  Similarity=0.190  Sum_probs=151.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .+.+.+++....+......++.....+-+.+.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-++.+++.
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            34555555555555555558888888889999999999999999999999999999999999996 66677888999999


Q ss_pred             HHHHHHHHhhcCCC------------CC-C-------------CCCCCCccc-cccCCchh-hHHHHHHHHHHHHHhccC
Q 008020          108 FGTGLLAISTKQPQ------------LR-P-------------PPCQATDIT-KCQHASGI-QMGVLYISLYLIALGTGG  159 (581)
Q Consensus       108 ~~~~~~~~~~~~~~------------~~-~-------------~~~~~~~~~-~~~~~~~~-~~~~l~~~~~l~glg~g~  159 (581)
                      +|.+++++-+.+..            .. +             +.|...... ++.+.+.. -..+++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            99998876533210            00 0             011111111 11112222 334789999999999999


Q ss_pred             cccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc------------------cc-chhhHHHH
Q 008020          160 LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD------------------EV-GRSWGYGI  220 (581)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~------------------~~-g~~~~f~i  220 (581)
                      .++.-.+|+-|...+++      -...+++++....+|.++|.++++++..                  +. .|...|++
T Consensus       254 i~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi  327 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI  327 (735)
T ss_pred             CccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence            99999999999999888      8889999999999999999999887632                  12 27778888


Q ss_pred             HHHHHHHHHHHHHHcccccc
Q 008020          221 CSICMFTAILIFLSGTRRYR  240 (581)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~  240 (581)
                      .+.+.++..+.+++..+.++
T Consensus       328 ~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  328 CGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHhCcccCc
Confidence            88777776666666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.08  E-value=2.5e-09  Score=108.65  Aligned_cols=185  Identities=16%  Similarity=0.050  Sum_probs=144.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .+..|.+.+.++..--++-++..++|.|++++++.++.+++.....+.+.+.+..+.+|+|+||+ |.+|++......++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            35679999999999889999999999999999999999999999999999999999999999999 99998888888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++..+.........                 +..+...+....+..++..|.-...+..++...++++       -+...
T Consensus       296 ~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~  351 (417)
T COG2223         296 LAAALLSLFLTGFG-----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT  351 (417)
T ss_pred             HHHHHHHccccccc-----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence            87777765411000                 0112333444344455555555666677777777653       68888


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTR  237 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~  237 (581)
                      ++.....++|++.-|...+...+..| +..+|++...+.+++.+..+....
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888887 888888888777777766555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.07  E-value=1.8e-09  Score=111.72  Aligned_cols=155  Identities=12%  Similarity=0.093  Sum_probs=127.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHH-HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIA-VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |.++......++.....+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            345666666666666666666 6778888777999999999999999999999999999999998 99999888876666


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++..+..+...                       +.+.+++..++.|++.+...+...+++.|.+|+++      |++..
T Consensus       289 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  339 (365)
T TIGR00900       289 LAILVVGLTPP-----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVF  339 (365)
T ss_pred             HHHHHHHhhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            66655554410                       15667788889999999999999999999999888      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVG  213 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g  213 (581)
                      ++.+...++|..++|.++|++.+.+|
T Consensus       340 ~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       340 GAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999987654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.06  E-value=2.1e-11  Score=132.27  Aligned_cols=191  Identities=17%  Similarity=0.208  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      .+....++......-+++.++++.++.|++.+.+-++..+..++..++++|. -|-|.+-++.++..+|.+++++-+.  
T Consensus        14 ~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lPhf--   90 (539)
T PF03137_consen   14 FQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALPHF--   90 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhccHh--
Confidence            3366777777777788999999999999999999999999999999999986 6667778888999999998876433  


Q ss_pred             CCCCCCCCCC-----------ccccc-------------------cCCchhhHHHHHHHHHHHHHhccCcccchhhhccc
Q 008020          121 QLRPPPCQAT-----------DITKC-------------------QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTD  170 (581)
Q Consensus       121 ~~~~~~~~~~-----------~~~~~-------------------~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~  170 (581)
                        .-++|.-.           +..-|                   +........+++++.++.|+|....++...+|+-|
T Consensus        91 --~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   91 --LSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             --hcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence              22222100           00111                   11112245788999999999999999999999999


Q ss_pred             CCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc---------------------ccc-hhhHHHHHHHHHHHH
Q 008020          171 QFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD---------------------EVG-RSWGYGICSICMFTA  228 (581)
Q Consensus       171 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~---------------------~~g-~~~~f~i~~~~~~~~  228 (581)
                      ..++++      -+...|+++....+|..+|.++++.+..                     +.| |...|.+.+++.++.
T Consensus       169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~  242 (539)
T PF03137_consen  169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS  242 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999988      8888999999999999999888876532                     123 777787777666665


Q ss_pred             HHHHHHcccccccc
Q 008020          229 ILIFLSGTRRYRYK  242 (581)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (581)
                      .+.+++..++++..
T Consensus       243 aipl~~FPk~lp~~  256 (539)
T PF03137_consen  243 AIPLFFFPKKLPGT  256 (539)
T ss_dssp             --------------
T ss_pred             HHHHHcCCccCCCc
Confidence            55555555544433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.05  E-value=4e-09  Score=111.53  Aligned_cols=174  Identities=13%  Similarity=0.171  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHH-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDF-MGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      .++..++..++..........+.+.|+.+++|++..+.+.+.... .++..++.+++|++.||+ |||+.+..+.+...+
T Consensus       210 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l  288 (402)
T PRK11902        210 GAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAV  288 (402)
T ss_pred             CHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            344444544554444333334455677778999999999987665 456889999999999998 999988777766655


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH----HHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL----YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      ..+........++                    +.+.+++..    +..+++.+...+....++.+.+|.++      + 
T Consensus       289 ~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~-  341 (402)
T PRK11902        289 SNLGYWVLAVTPK--------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y-  341 (402)
T ss_pred             HHHHHHHHHhcCC--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H-
Confidence            5443322111011                    133344333    34555566667777777777776544      4 


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                         +++....++|..+++.++|.+.+..||+..|.+..++.+++..+...
T Consensus       342 ---~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        342 ---ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               34444456677666668999999999999999888777766555443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.02  E-value=9.5e-09  Score=109.42  Aligned_cols=146  Identities=18%  Similarity=0.100  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020           44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR  123 (581)
Q Consensus        44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      ..+.+..++|.|+.+ .|.+..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++....   +.  
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~--  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ--  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc--
Confidence            344566788888875 599999999988999999999999999999998 99999988887766655444322   11  


Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020          124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~  203 (581)
                                       .....+.+..+..+.+..+..+..+.++.|.+|++.      |++++++.+...++|+.++|.
T Consensus       319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~  375 (426)
T PRK12307        319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSM  375 (426)
T ss_pred             -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHH
Confidence                             011112122222222233344566778899999988      999999998889999999999


Q ss_pred             HHHHhhcccchhhHHH
Q 008020          204 VLVYIQDEVGRSWGYG  219 (581)
Q Consensus       204 ~~~~l~~~~g~~~~f~  219 (581)
                      +.|++.+..|+....+
T Consensus       376 ~~g~l~~~~g~~~~~~  391 (426)
T PRK12307        376 AATWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHHHcccHHHHHH
Confidence            9999999888665433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.02  E-value=9.2e-09  Score=110.98  Aligned_cols=177  Identities=14%  Similarity=0.010  Sum_probs=122.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH--------H
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTI--------A  100 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l--------~  100 (581)
                      +.+|...+..++....++.+..++|.|+.+.+|++..+.+...+...++..++.+++|+++||+ ++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            4678888999999999999999999999999999999999999999999999999999999997 544321        1


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020          101 IFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  180 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~  180 (581)
                      .+......+..+...... .                    .+.....+...+.+.+.++..+.......|..|+ .    
T Consensus       340 ~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~----  393 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F----  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence            111111111111111100 0                    0123333344444555555555555555566553 4    


Q ss_pred             hHHhhHHHHHHHHHHhhHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHHHHHHH
Q 008020          181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDEV---GRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       181 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                        ++.+.++.+...++|+.++|.+.|++.+..   +|+.+|.+.++..+++.+....
T Consensus       394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence              899999999999999999999999887643   3888888777666666554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.01  E-value=6.4e-09  Score=112.49  Aligned_cols=174  Identities=11%  Similarity=0.034  Sum_probs=114.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchH-------HHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYR-------TIAIF  102 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~-------~l~~~  102 (581)
                      .+|.+.+..++.....+.+..++|.|+.+.+|++..+++.+.+.+.++..++.+++|+++||+ |||+       .+.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            346666665555556667778899999888999999999999999999999999999999998 8762       11122


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhH
Q 008020          103 ATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  182 (581)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~  182 (581)
                      .++..+..++....                        .+.....+..++.+++.+...+...++..+..| +.      
T Consensus       332 ~~l~~i~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------  380 (476)
T PLN00028        332 QTLGGVFCIWLGRA------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------  380 (476)
T ss_pred             HHHHHHHHHHhccc------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence            22211111222111                        113334444455555555445555556666544 45      


Q ss_pred             HhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020          183 MAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       183 r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                      |+...++.+...++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            889999987777777777776644 22344699999988877777766655543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.01  E-value=7.7e-09  Score=108.22  Aligned_cols=163  Identities=9%  Similarity=-0.005  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+...+...+....++....+.|.|+++.+|+++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            445555555566666777777788888889999999999999999999999999999999998 9999998887777777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+++......+.                   .....+.+...+.|++.+...+.......|..| ++      |+++.++
T Consensus       286 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  339 (385)
T TIGR00710       286 AVLLEITAILGL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL  339 (385)
T ss_pred             HHHHHHHHHhcc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence            666554421110                   123445556667888888888888888888776 45      8888998


Q ss_pred             HHHHHH-hhHHHHHHHHHHhhcccchhhHHHH
Q 008020          190 FFFVIS-TGTLMAVTVLVYIQDEVGRSWGYGI  220 (581)
Q Consensus       190 ~~~~~~-~g~~i~~~~~~~l~~~~g~~~~f~i  220 (581)
                      .+.... +|...+|.+ +.+.+..+|...+..
T Consensus       340 ~~~~~~~~g~i~~~~~-~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       340 FGTLRLVLGAIVGYLV-SLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHH-HhccccChHHHHHHH
Confidence            777665 455556554 455555555554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.00  E-value=5e-09  Score=113.95  Aligned_cols=154  Identities=9%  Similarity=-0.009  Sum_probs=128.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+.......++....+++...++|.|+++.+|+++.+++.......++..++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4556666777777788888888999999999999999999999999999999999999999998 999999888888777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.+++......                     .+.+...+..++.|+|.|...+.....+.+..|+++      ++.+.+
T Consensus       338 ~~~~l~~~~~~---------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~  390 (495)
T PRK14995        338 SFYGLAMTDFS---------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA  390 (495)
T ss_pred             HHHHHHHhcCC---------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence            77665443110                     124445667788899999988888888889899888      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhc
Q 008020          189 RFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                      +++...++|..+|+.+.+.+.+
T Consensus       391 ~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        391 IETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754

>TIGR00896 CynX cyanate transporter

Probab=99.00  E-value=9.6e-09  Score=106.64  Aligned_cols=154  Identities=15%  Similarity=-0.013  Sum_probs=117.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +..+.+.+...+....++....++|.|+++ .|++..+.+.+.+...++..+++++.|+++||+.+||+.+.++.++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            345666666667777788888899999975 7999999999999999999999999999999983456666777777777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.+.+.+...                        .... ...++.|++.|...|...+.+.+..++++     +++...+
T Consensus       276 ~~~~~~~~~~------------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~  325 (355)
T TIGR00896       276 GLCGLLFAPM------------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSA  325 (355)
T ss_pred             HHHHHHHhhh------------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHH
Confidence            7666554411                        1111 23467799999988887777766555432     1788888


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccc
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVG  213 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g  213 (581)
                      +.+...++|..++|.+.|++.++.|
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888999999999999988776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.99  E-value=7.4e-09  Score=109.24  Aligned_cols=171  Identities=13%  Similarity=0.044  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      .++..+...++....+.....+.+.|+.+.+   +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3444445555555555555556777876654   55666778888888888899999999999998 9999999988887


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++..+...+.                        +.+.+++.+++.+++..........+..+..+++.      +++.
T Consensus       295 ~l~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~  344 (396)
T TIGR00882       295 SVRIIGSSFAT------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI  344 (396)
T ss_pred             HHHHHHHHhcC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence            77776655442                        25556777888888766555555556666667666      6666


Q ss_pred             HHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          187 FSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       187 ~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      .+. ++....+|..+++.++|++.+..||+..|.+.+++.++..++
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            665 667889999999999999999999999998877665554443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.99  E-value=1.6e-08  Score=106.13  Aligned_cols=172  Identities=10%  Similarity=0.006  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+......++.....+....++++|+.+.+|++..+.+.+.+...++..++.++.|+++||+ |+|+.+..+..+..++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~  278 (382)
T PRK10091        200 APWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLA  278 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHH
Confidence            345555555555556666667778888888999999999999999999999999999999998 9999998888777777


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhh-hcccCCCCCChHHHhHHhhHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSG-FGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      .++......                       +.+...+..++.++|.....+.... ...+..+++.      ++.+. 
T Consensus       279 ~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~-  328 (382)
T PRK10091        279 LLMLFFFGG-----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG-  328 (382)
T ss_pred             HHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH-
Confidence            655433211                       1333444455555555444443333 3334333333      44433 


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDE-VGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                       .+...++|..+||.++|++.+. .+|+..+.+..+..++.+....
T Consensus       329 -~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        329 -GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             -HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence             3556789999999999998885 6799998877666555544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.98  E-value=6e-09  Score=112.86  Aligned_cols=156  Identities=12%  Similarity=0.085  Sum_probs=128.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++...+..++..+.+++...++|.|+++.+|++..+.+.......++..++.+++|++.||+ |||+.+.++..+.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3456667777778888888889999999999999999999999999999999999999999998 999999998888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..+..+... +.                   .+.+.+....++.|+|.+...+.......+..|+++      |+++.+
T Consensus       334 ~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~  387 (485)
T TIGR00711       334 GFYWRAFTFT-PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS  387 (485)
T ss_pred             HHHHHhccCC-CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence            7776653211 11                   124556666788899998887777777778888888      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcc
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDE  211 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~  211 (581)
                      +.+...++|+.+|+.+.+.+.++
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=98.98  E-value=5.1e-09  Score=109.79  Aligned_cols=147  Identities=12%  Similarity=-0.019  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+......++....++.+..++| ++.+++|++..+.+...+...++..++.+++|+++||+ |||+.+..........
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            445555666677777777777887 66678899999999999999999999999999999998 9985544443333333


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .++....   .                     +...+++..++.|++.+...+...+++.|.+|++.      |++++++
T Consensus       329 ~~~~~~~---~---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  378 (398)
T TIGR00895       329 VLVGSTL---F---------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW  378 (398)
T ss_pred             HHHHHHh---h---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence            3222212   1                     24556777788899999999999999999999988      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHh
Q 008020          190 FFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l  208 (581)
                      .+...++|..+||.++|++
T Consensus       379 ~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       379 AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999875

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.96  E-value=2.8e-08  Score=107.57  Aligned_cols=157  Identities=11%  Similarity=-0.040  Sum_probs=110.6

Q ss_pred             HHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 008020           50 VNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQA  129 (581)
Q Consensus        50 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (581)
                      .+.|.+ .+++|.+.....+......+...++.+++|+++||+ |||++++.+.++.+++.+++......+.        
T Consensus       292 ~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~--------  361 (479)
T PRK10077        292 YYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA--------  361 (479)
T ss_pred             HHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc--------
Confidence            334443 456888877777777778888899999999999998 9999999999988888777654421010        


Q ss_pred             CccccccCCchhhHHHHHHHHHHHHHhccC-cccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHH-
Q 008020          130 TDITKCQHASGIQMGVLYISLYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVY-  207 (581)
Q Consensus       130 ~~~~~~~~~~~~~~~~l~~~~~l~glg~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~-  207 (581)
                                  .......+.++.+.+.+. ..|+...++.|.+|++.      |++++++.+...++|..+++.+.+. 
T Consensus       362 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        362 ------------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             ------------ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                        011223334444444443 34778899999999888      9999999988888888888655543 


Q ss_pred             -----hhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          208 -----IQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       208 -----l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                           +.+..+|+..|++.++..+++.+..++
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence                 445778888888766655555444443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.96  E-value=1.7e-08  Score=109.45  Aligned_cols=173  Identities=17%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .+..++...++.++....+...+|.+.++.+|.+....|++.+++.++..++.++.+++.+|+ ++++.+..+.+...++
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~  297 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA  297 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence            334444444555555555666788888999999999999999999999999999999999998 9999988888888887


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+.++++.                        +.+..++..++.|++.....+...+.+.+..|++.      |||.+++
T Consensus       298 ~~~lal~~------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si  347 (524)
T PF05977_consen  298 LLLLALSP------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSI  347 (524)
T ss_pred             HHHHhcch------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHH
Confidence            77777662                        26777788888899988888888899999999998      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      +......+..+|.++.|.+.+.+|-+..+.++++..++..++..
T Consensus       348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888877766555544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.96  E-value=5e-07  Score=90.91  Aligned_cols=149  Identities=17%  Similarity=0.140  Sum_probs=102.4

Q ss_pred             cccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccC
Q 008020           58 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQH  137 (581)
Q Consensus        58 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (581)
                      ++.|++..|++.+..+....+.+..++.|.++||+ |||+..+...+++.++.+.-- +   +                 
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~---~-----------------  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S---S-----------------  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c---c-----------------
Confidence            57899999999999999999999999999999998 999998888888887775432 2   2                 


Q ss_pred             CchhhHHHHHHHHHHHHHhccCcccchhhhc-ccCCCCCChHHHhHHhhHHHHHH-HHHHhhHHHHHHHHHHhhcccch-
Q 008020          138 ASGIQMGVLYISLYLIALGTGGLKSSVSGFG-TDQFDEKDEKEKTQMAYFFSRFF-FVISTGTLMAVTVLVYIQDEVGR-  214 (581)
Q Consensus       138 ~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~i~~~~~~~l~~~~g~-  214 (581)
                          ++..++++|++.|++.....++-.+.. .|.-....+.+  -.+.-++... ....+-.+++.+++-++.+..+. 
T Consensus       120 ----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g  193 (354)
T PF05631_consen  120 ----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG  193 (354)
T ss_pred             ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence                388999999999999999988887765 33221111100  0233333222 12223334444455555555554 


Q ss_pred             -hhHHHHHHHHHHHHHHHHHH
Q 008020          215 -SWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       215 -~~~f~i~~~~~~~~~~~~~~  234 (581)
                       ..+|..+.++.+++.++...
T Consensus       194 ~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  194 PVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             CcchHHHHHHHHHHHHHHHHh
Confidence             67888887777766655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.95  E-value=3.2e-08  Score=104.88  Aligned_cols=185  Identities=14%  Similarity=0.060  Sum_probs=127.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..|.+.+.+++..-++.+...++|.|+++.+  +............+...+.++++|+++||+ |+||++.++.+...++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            5788888888877777778779999988755  333333334455778889999999999998 9999999998877776


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCC-------------
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKD-------------  176 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~-------------  176 (581)
                      ........  |.                .+..+...+.+..+...++.|.-...+..++.+.+|+++             
T Consensus       330 ~~~~~l~l--p~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~  391 (462)
T PRK15034        330 SALLFLTL--PG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ  391 (462)
T ss_pred             HHHHHHHh--cc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence            65433331  21                011235556666655566667767777777777776410             


Q ss_pred             --hHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHc
Q 008020          177 --EKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       177 --~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                        ...+.+-+...|+......+|+++-|.+.|...+..| +...|+...+..+++.++.+..
T Consensus       392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence              0111236677788888888999999977777766544 7778887777777776665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.92  E-value=6.5e-08  Score=102.04  Aligned_cols=165  Identities=12%  Similarity=-0.032  Sum_probs=118.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++......++.....++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .+..+..+..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~  293 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHH
Confidence            3455555555666666666666764544567899999999999999999999999999999996 544 43334333333


Q ss_pred             H-HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          109 G-TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      . .++....                        .+.+.+.+..++.|++.+...+...+++.+..|+ +      +++..
T Consensus       294 ~~~~l~~~~------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~  342 (394)
T PRK10213        294 SALVLTLWG------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAG  342 (394)
T ss_pred             HHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHH
Confidence            3 3333222                        1255666778888999998888888888888874 3      45556


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMF  226 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~  226 (581)
                      +......++|..+||.++|++.+..|++..+...++..+
T Consensus       343 ~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        343 SIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            666667789999999999999999998888877665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.91  E-value=2.5e-08  Score=105.42  Aligned_cols=154  Identities=7%  Similarity=0.003  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020           47 GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP  126 (581)
Q Consensus        47 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      ....++|.|+++..+ ++.+.+.+.+...+....+..+.+++.||..+.++.+..+.++..++.+++....         
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------  295 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------  295 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh---------
Confidence            345567888876655 6678888887777766655555567766543667777777777777776665542         


Q ss_pred             CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                                     +...+.+...+.++|.+...|...+++.+..|+++      |++.+++++...++|..+||.++|
T Consensus       296 ---------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G  354 (400)
T PRK11646        296 ---------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGG  354 (400)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchH
Confidence                           14455566677888888888899999999999998      999999999999999999999999


Q ss_pred             Hhhccc---c-hhhHHHHHHHHHHHHHHH
Q 008020          207 YIQDEV---G-RSWGYGICSICMFTAILI  231 (581)
Q Consensus       207 ~l~~~~---g-~~~~f~i~~~~~~~~~~~  231 (581)
                      ++.+..   + ....|++..+..++..+.
T Consensus       355 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        355 WLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            998764   2 244555544444444333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=1.7e-08  Score=102.70  Aligned_cols=175  Identities=15%  Similarity=0.133  Sum_probs=142.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.+..-++..++.+=+.-++...-..|-..++|++..+...+.....+..+++++++|+|+||+ |-|+++.+++++..+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            4666677777777777778888888999999999999999999999999999999999999998 999999999988777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ..+...+..                        ....+++.-++.|...|...+..-++.++++|+++      -+++++
T Consensus       331 ~~~~~~~~~------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFg  380 (438)
T COG2270         331 AALYLIFLE------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFG  380 (438)
T ss_pred             HHHHHHHcc------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceee
Confidence            666554441                        14446666778899999999999999999999999      899999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +++.....++.+||...+.+.+.+| -|..+..-.++..++++++..
T Consensus       381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~  427 (438)
T COG2270         381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR  427 (438)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe
Confidence            9999999999999999999887665 455554444444444444433

>PRK10133 L-fucose transporter; Provisional

Probab=98.90  E-value=4e-08  Score=105.11  Aligned_cols=168  Identities=16%  Similarity=0.153  Sum_probs=125.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYL-GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      .++...+..++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+..+..+
T Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~  337 (438)
T PRK10133        259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA  337 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344455556666677777778888896 567899999999999999999999999999999998 999999888777665


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.++..+.   +.                     . ..+....+.|++.+...|...+...+.++++       .+.+.+
T Consensus       338 ~~~~~~~~---~~---------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~  385 (438)
T PRK10133        338 LCLISAFA---GG---------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS  385 (438)
T ss_pred             HHHHHHHc---CC---------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchh
Confidence            55444332   11                     1 1244566789999999999999999988753       344455


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILI  231 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~  231 (581)
                      +... ..+|+.++|.+.|.+.+..| -+..|++..++.+.....
T Consensus       386 l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        386 FIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            4433 33678888888999988887 788888776665544433

>PRK10054 putative transporter; Provisional

Probab=98.90  E-value=2.3e-08  Score=105.47  Aligned_cols=174  Identities=11%  Similarity=-0.056  Sum_probs=128.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~  106 (581)
                      |.++......++..+.+.....+++.|+..  +.+.+....+.+............++.|++.||+ ++|+.+..+..+.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            345556666666666655555566666643  3455566667777777777777778889999998 9999999888877


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++..+.....                       .+.+.+.++..+.++|.+...|...+++.+..|++.      |++.
T Consensus       285 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~  335 (395)
T PRK10054        285 VIGLVGFIFSG-----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY  335 (395)
T ss_pred             HHHHHHHHHcc-----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence            77776665431                       124556677888999988888888889999999888      8888


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ++..+ ...+|..+||.++|++.++.|....|++......++.++..
T Consensus       336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            88654 56689999999999999999988888776555554444433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.3e-06  Score=91.67  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHH
Q 008020           71 VTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISL  150 (581)
Q Consensus        71 ~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  150 (581)
                      .++.+....+.+++++.+-|+. |.|+.+.++...+..-.+.+.+-                         +.+.++++-
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-------------------------N~y~~yfss  109 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-------------------------NSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-------------------------chHHHHHHH
Confidence            6777888889999999999998 99999999988776654444332                         267789999


Q ss_pred             HHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020          151 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL  205 (581)
Q Consensus       151 ~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  205 (581)
                      .+.|+|.+..+.-...++++...++.      +.+..++.......+.++|..+.
T Consensus       110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            99999999999999999999999888      88888887777777777775443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.89  E-value=3.1e-08  Score=119.05  Aligned_cols=163  Identities=11%  Similarity=0.068  Sum_probs=130.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChh-hhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSA-TSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++.+++.+++|+++||+ ++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3455555555666666667778899999999999999 999999999999999999999999998 99998888887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.+++.+..                        +.+.+++..++.|++.++..+...+++.+..|++.      |++++
T Consensus       311 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~  360 (1146)
T PRK08633        311 LSLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL  360 (1146)
T ss_pred             HHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence            7776665542                        25667777888999999988889999999999998      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICS  222 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~  222 (581)
                      ++.+...++|..+++.+++.+.. .+++...|++.+
T Consensus       361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~  396 (1146)
T PRK08633        361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIA  396 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999999888877776643 234444555443

>PRK09848 glucuronide transporter; Provisional

Probab=98.89  E-value=2.3e-08  Score=107.40  Aligned_cols=163  Identities=15%  Similarity=0.143  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++...+..++....++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4566677777777777777777777788888898776665555555677788999999999998 999999999988888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~  187 (581)
                      +.++..+.   +.                   .+.+.+++..++.++|.+...+...++.+|..|.++.+.+. +++..+
T Consensus       307 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        307 GYLLFFWV---SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             HHHHHHHc---Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            77766543   11                   23556677788899999999999999999998865422111 147788


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      +.+++...+|..+|+.+.+.+.+..||
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999998887655544

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.89  E-value=2.7e-08  Score=108.50  Aligned_cols=167  Identities=14%  Similarity=0.097  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCCChhhhhh------------HHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHH
Q 008020           36 GIEICERLSTMGIAVNLVTYLGGTMHLPSATSAN------------IVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFA  103 (581)
Q Consensus        36 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~  103 (581)
                      ...++..+.+|++..++|.+++ +.|++..+.+.            ......++..++.+++++++||+ |||++++++.
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~  372 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF  372 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence            3445556677888777888775 66776543221            12233445566788899999998 9999998888


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      .+..++..+..+......                   . ...+....+....+..+..+..+.+.+|.+|.+.      |
T Consensus       373 ~~~~~~~~~l~~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R  426 (502)
T TIGR00887       373 FILTVLFFVLGFAYNHLS-------------------T-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R  426 (502)
T ss_pred             HHHHHHHHHHHHHHHhcc-------------------h-hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence            776666655544311000                   0 1111111111222222344566777899999999      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcc----------cchhhHHHHHHHHHHHHHH
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDE----------VGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~----------~g~~~~f~i~~~~~~~~~~  230 (581)
                      +++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+
T Consensus       427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988773          3344566655555444433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.87  E-value=5.7e-09  Score=107.53  Aligned_cols=145  Identities=20%  Similarity=0.162  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLP-SATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      .+|..+...++..+.++....++|.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+..........+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  285 (352)
T PF07690_consen  207 VLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLIL  285 (352)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            3454566666666777788899999999999999 78999999999999999999999999998 998888777776666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.+.+......                     .+....++..++.|++.+...+...+++.|.+|+++      |+++.+
T Consensus       286 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g  338 (352)
T PF07690_consen  286 GALGLLLLPFS---------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFG  338 (352)
T ss_dssp             HHHHHCCSHHH---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHH
T ss_pred             HHHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHH
Confidence            66655444211                     124556667788899999999999999999999998      999999


Q ss_pred             HHHHHHHhhHHHHH
Q 008020          189 RFFFVISTGTLMAV  202 (581)
Q Consensus       189 ~~~~~~~~g~~i~~  202 (581)
                      +.+...++|..+||
T Consensus       339 ~~~~~~~~~~~igP  352 (352)
T PF07690_consen  339 LFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC
Confidence            99999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=9.2e-08  Score=102.07  Aligned_cols=162  Identities=19%  Similarity=0.131  Sum_probs=132.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+..++...++..++........+.|.+..+|.+ ...+.+.....++..++.+++++++||+ |+|+++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            56777888888888888888888888888888877 5667778889999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH-hHHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK-TQMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~  187 (581)
                      +.++..+...                      .+.+.+++..++.|++.+...+...++++|..+.++.+++ .+.|..+
T Consensus       303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~  360 (428)
T PF13347_consen  303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF  360 (428)
T ss_pred             HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence            8888777621                      2378888999999999999999999999999986543222 1246777


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      +.+.....+|..+++.+.+.+.+..|+
T Consensus       361 s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  361 SVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            888889999999999988877554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.85  E-value=3.4e-08  Score=118.53  Aligned_cols=184  Identities=11%  Similarity=-0.053  Sum_probs=133.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      +.++...+..++..+..+.+..++|.|+++.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4677777777778888888888999999999999999999999999999999999999999987 776666655555444


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +.+.+.+... ....++.+-.   .........+.+.++++.++.|++.++..+...+++.+.+|++.      ||++++
T Consensus       304 ~~~~l~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g  373 (1140)
T PRK06814        304 FGLDLAFASS-SVPAEPAQLK---SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIA  373 (1140)
T ss_pred             HHHHHHhccc-cccccccccc---chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeH
Confidence            4443332100 0000000000   00000000124567778888999999999999999999999999      999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhc-ccchhhHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQD-EVGRSWGYGICSI  223 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~f~i~~~  223 (581)
                      ..+...++|..+++++.+.+.+ ..++...|++..+
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999999999988864 3456666554443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.81  E-value=1.5e-07  Score=98.24  Aligned_cols=166  Identities=11%  Similarity=-0.079  Sum_probs=111.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccch---HHHHH-HHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRY---RTIAI-FAT  104 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr---~~l~~-~~~  104 (581)
                      |.+|.+....++....+|++..|+|.|+++ .|++.. .+.......+...++   .++++||. .||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567889999999999999999999999964 677754 455555555544444   47788876 543   33222 333


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +.+++..+.....                        +.....+...+.+++.....+..+++.+|.+|++.      |+
T Consensus       266 ~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg  315 (368)
T TIGR00903       266 LIAAFFLALAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG  315 (368)
T ss_pred             HHHHHHHHHHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence            3333333333221                        12223344455566666666778899999999999      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIF  232 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~  232 (581)
                      ++.++.+...++|+.++|.+.+.+..  |....|.+.++..+++.+..
T Consensus       316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988887763  55666665555555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.80  E-value=1.3e-07  Score=98.72  Aligned_cols=149  Identities=7%  Similarity=-0.069  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..+...+..++.....+.+..+.|.++.+.+|++..+.+.+.....++..++.++.|+++||+ |||+.+.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344455555556666666677777788888999999999999999999999999999999998 9999998888765543


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+.+......+                    ...+.+.++..+.+.+.+...+.....+.|..| +.      ++++.+.
T Consensus       274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  326 (377)
T PRK11102        274 GIWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL  326 (377)
T ss_pred             HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence            33322221101                    113334444445555555555666666777766 55      7888877


Q ss_pred             HHHH-HHhhHHHHHHHHH
Q 008020          190 FFFV-ISTGTLMAVTVLV  206 (581)
Q Consensus       190 ~~~~-~~~g~~i~~~~~~  206 (581)
                      .+.. ..+|..+++.+++
T Consensus       327 ~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        327 AGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            5543 4567777776654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.79  E-value=2.5e-07  Score=97.53  Aligned_cols=158  Identities=9%  Similarity=-0.053  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           41 ERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        41 ~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      ...........++.|+++.+|.+..+.+.+.+...++..++.++.+++.||+ ++|+++..+... .+..++....    
T Consensus       217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~----  290 (393)
T PRK11195        217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH----
Confidence            3444455556677788888999999999999999999999999999999998 988888777533 3333333322    


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLM  200 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i  200 (581)
                                          .+.+...+..++.|++.+...+...+.+.+..|++. +    ++++.+..+...++|..+
T Consensus       291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~  345 (393)
T PRK11195        291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLL  345 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHH
Confidence                                124555667778899988888888888887655432 1    688999999999999999


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHHH
Q 008020          201 AVTVLVYIQDEVGRSWGYGICSICMFTAIL  230 (581)
Q Consensus       201 ~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~  230 (581)
                      +..+.+.+ +..|-+..+.+..+..++...
T Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALA  374 (393)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence            99888865 557777777766555554443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.77  E-value=6.2e-07  Score=93.60  Aligned_cols=141  Identities=16%  Similarity=0.225  Sum_probs=101.3

Q ss_pred             hhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehh
Q 008020          374 LTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFY  453 (581)
Q Consensus       374 ~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (581)
                      ....+..+.+++-++..+++.++++          .+.+..|+.+..+-++.++.+                   .++|.
T Consensus       411 ~~a~~~~gEI~~~ffs~klI~kiGH----------v~v~~lgLa~~~~Rf~~~S~L-------------------~n~W~  461 (618)
T KOG3762|consen  411 VSALCHAGEILFYFFSFKLIEKIGH----------VNVMYLGLACNVGRFLYYSYL-------------------QNPWM  461 (618)
T ss_pred             hhhhhccchHHHHHHHHHHHHHhcc----------cceeeehhhHHHHHHHHHHHh-------------------cCchh
Confidence            4455566666666666666544433          233677888887777777765                   36677


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchh
Q 008020          454 LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRL  532 (581)
Q Consensus       454 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~  532 (581)
                      +++.-++.|+..+..+.+.-+|+...+|+++|.+++|+.. .-..+|-.+|..+.|.+...                .+.
T Consensus       462 vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~----------------fg~  525 (618)
T KOG3762|consen  462 VLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER----------------FGA  525 (618)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee----------------ehh
Confidence            7777789999999999999999999999999999999998 45668888888888766422                222


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          533 DCFYGLLAALSFINFGLFLLCASWYKR  559 (581)
Q Consensus       533 ~~~f~~~~~~~~i~~~~~~~~~~~~~~  559 (581)
                      ...|..+++.+++.++.+..+.+..++
T Consensus       526 ~ttf~~~giAcl~~l~~~~~iq~~l~~  552 (618)
T KOG3762|consen  526 RTTFRIFGIACLVTLALFISIQLLLKR  552 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            445777777777777766666554433

>TIGR00901 2A0125 AmpG-related permease

Probab=98.76  E-value=7.9e-08  Score=99.77  Aligned_cols=145  Identities=15%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      ..+.+++..++..+.++....+++.|+++ +|++..+.+.+.++.. +...++.+++|+++||+ |||+.+..+.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            36667777777888888999999999987 8999999998887665 67789999999999998 999998888877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..+..+......         ++.    .+..+.+.+....++.+++.+...+...+++.|.+|++.      |++.++
T Consensus       288 ~~~~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  348 (356)
T TIGR00901       288 TNAGFVWLASNGH---------HDG----ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMA  348 (356)
T ss_pred             HHHHHHHHHhcCc---------ccc----cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence            6654443211000         000    000124667777888899999999999999999999999      999999


Q ss_pred             HHHHHHH
Q 008020          189 RFFFVIS  195 (581)
Q Consensus       189 ~~~~~~~  195 (581)
                      +++...+
T Consensus       349 ~~~~~~~  355 (356)
T TIGR00901       349 LLSSLSA  355 (356)
T ss_pred             HHHHHHh
Confidence            9876554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.74  E-value=6.7e-07  Score=89.38  Aligned_cols=163  Identities=15%  Similarity=0.031  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      ..|.+.+-.-+.++.+|.+..|+|.++. +.|+|..++|.+.+...+......+..-.+++|...+|+........+.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            5788888888899999999999999988 679999999999999999999999999999998767888888888888888


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      ..-+.+.   |.                    +...+.  .+++|+|.|+.+|....++.+..++.+.     -++..++
T Consensus       288 ~~G~~~~---P~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgm  337 (395)
T COG2807         288 LVGLLLA---PG--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGM  337 (395)
T ss_pred             HHHHHHh---hh--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHH
Confidence            8766665   21                    122222  4789999999999999999998876541     5566667


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSI  223 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~  223 (581)
                      .+-...+=..+||.+.|++.|..| |+.++..-..
T Consensus       338 aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~  372 (395)
T COG2807         338 AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLAL  372 (395)
T ss_pred             hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHH
Confidence            666666666789999999988775 7776654433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.74  E-value=3.6e-07  Score=98.87  Aligned_cols=165  Identities=14%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++.++...++.....+......+.|.+..++ +....+.+.+...++..++.+++++++||+ |+|+.+.++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            566777777777777777666666655554444 455666677777788899999999999998 999999988877676


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~  187 (581)
                      +.+........+.                   .+.+.+++..++.+++.+...+...++++|..+.++-..+. +.|..+
T Consensus       309 ~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~  369 (473)
T PRK10429        309 SCGVLLLMGLAAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY  369 (473)
T ss_pred             HHHHHHHHhccCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence            6655433211011                   22556667777888999999999999999998754321111 134467


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      +...+...+|..+++.+.|++.+..|+
T Consensus       370 s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        370 SVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            788888899999999999888665554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=7e-08  Score=104.13  Aligned_cols=176  Identities=15%  Similarity=0.176  Sum_probs=150.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc--chHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG--RYRTIAIFATVQ  106 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rr~~l~~~~~~~  106 (581)
                      +.++.......+..++++.-...++.|.. ..+++..+++.+.++..+...++.++.|+++|+. .  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            57788888888899999988899999988 8999999999999999999999999999999997 6  334555666666


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          107 TFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                      .++...+++..                        +++.+++..++.|+..|......+..+.|..+.++      ...+
T Consensus       376 gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a  425 (509)
T KOG2504|consen  376 GLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA  425 (509)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence            66666666652                        37888999999999999998888889999999998      9999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHcc
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                      +|+......++.++||.++|++.+..| |...|+.++++.+++..+.+...
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999999999888 88899988888777776655544

>PRK11043 putative transporter; Provisional

Probab=98.73  E-value=6.5e-07  Score=94.57  Aligned_cols=157  Identities=8%  Similarity=-0.082  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      +...+...+....++.+..++|.|++ +.|++..+.+.......++..++.++.+++.||+ |+|+.+........++.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        206 LGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            33334444455556666777888876 5799999999888888888899999999999998 999987666655555444


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      .+........                   .+...+.+...+.+++.+...+...+...+..| ++      ++++.++++
T Consensus       284 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~~  337 (401)
T PRK11043        284 AIWLASLLSH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQN  337 (401)
T ss_pred             HHHHHHHhcc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHHH
Confidence            3322211010                   124445556677888888888888888777765 46      899999998


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhh
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSW  216 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~  216 (581)
                      .....++.+++.+.+.+.+......
T Consensus       338 ~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        338 TLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHHHccCCChhHH
Confidence            8878888888888888876443333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.72  E-value=9.7e-08  Score=101.83  Aligned_cols=177  Identities=14%  Similarity=0.064  Sum_probs=119.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-------chHHH-H
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-------RYRTI-A  100 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------rr~~l-~  100 (581)
                      +.+|.+.+..++.+.+++.+..++|.|+.+.+|++..+.|++.+...+...+..+++|.++||...       +||.+ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            488999999999999999999999999999999999999999999999999999999999999822       11221 1


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020          101 IFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  180 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~  180 (581)
                      ++....++..+.+++.   +.               .+.......+.++..+.|+..++.    ..-..|.. ++.    
T Consensus       338 i~~~~~ai~l~~l~~~---~~---------------~~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~a-pq~----  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT---SD---------------EHRLLAVILLTIAIGLSGFNISGF----YKNHQDIA-PQH----  390 (466)
T ss_pred             HHHHHHHHHHHeeeec---CC---------------CcchHHHHHHHHHHHHcccchhhh----Hhhhhhcc-chH----
Confidence            2222222222222222   21               000011122222222222222222    11122222 333    


Q ss_pred             hHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHH
Q 008020          181 TQMAYFFSRFFFVISTGTLMAVTVLVYIQDE---VGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       181 ~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                        -+..+++.+...++.++++|.+.+.+...   ..|+.+|++.++..++.-+.+.+
T Consensus       391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence              78889999999999999999999999842   36999999988877776655443

>TIGR00898 2A0119 cation transport protein

Probab=98.71  E-value=1.8e-07  Score=102.01  Aligned_cols=132  Identities=12%  Similarity=-0.063  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020           72 TDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY  151 (581)
Q Consensus        72 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (581)
                      ....+....+.++.++++||+ |||+.+.++.++..++.++..+...                      ...+...+..+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~  418 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV----------------------DLYFLRTALAV  418 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC----------------------CchHHHHHHHH
Confidence            344566777888999999998 9999999998887777766655421                      11233444445


Q ss_pred             HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      +.+++.++..+..+.+..|.+|++.      |++++++.+....+|++++|.+.+ +. ..++..++.+.+++.+++.+.
T Consensus       419 ~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       419 LGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHH
Confidence            5566666677888899999999988      999999999999999999999988 43 345666776666555555444


Q ss_pred             HHH
Q 008020          232 FLS  234 (581)
Q Consensus       232 ~~~  234 (581)
                      ..+
T Consensus       491 ~~~  493 (505)
T TIGR00898       491 TLF  493 (505)
T ss_pred             HHc
Confidence            333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.68  E-value=5.1e-07  Score=95.08  Aligned_cols=79  Identities=15%  Similarity=0.034  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
Q 008020           37 IEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIS  116 (581)
Q Consensus        37 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~  116 (581)
                      ...+..........+.|.|+++++|++..+.+.+.+...++..++.++.|++.||+ |||+.+.++..+..++.+++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        211 ITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444455567788888999999999999999999999999999999998 99999999988888777766655

>PRK09669 putative symporter YagG; Provisional

Probab=98.64  E-value=4.5e-07  Score=97.28  Aligned_cols=162  Identities=13%  Similarity=0.081  Sum_probs=108.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++.++...++............+.|.+..++. ....+.+.....+...++.+++++++||+ |+|+.+..+.+..++
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3455555555555555443333333344444443 33344555566778888899999999998 999999888766554


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHh-HHhhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~  187 (581)
                      +.+...+..  +                    .+.+.+++..++.+++.+...+...++++|..+.++.+++. +.+..+
T Consensus       307 ~~~~~~~~~--~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~  364 (444)
T PRK09669        307 LSALIFFIP--P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVF  364 (444)
T ss_pred             HHHHHHHhC--c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHH
Confidence            443332221  1                    23556777788899999999999999999998754422221 135567


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      +.+.+...+|..+|+.++|.+.+..|+
T Consensus       365 s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        365 STNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            788888999999999999988776665

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.62  E-value=1.8e-06  Score=90.83  Aligned_cols=178  Identities=11%  Similarity=0.049  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 008020           31 AALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGT  110 (581)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~  110 (581)
                      +...++..++...+.-....+...|+++.-+.+....+.+.+...++-.+.-.+.+++-.|+ |.|+++.++.+..++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            44455555666666666677788898865547777778777777778888888899999998 99999999998888876


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      .+.+.... |.                  .........+..++|+..|....+...++.+..|++.      |+++.+++
T Consensus       288 ~l~a~~~~-~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~  342 (400)
T PF03825_consen  288 LLYAYFSD-PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLY  342 (400)
T ss_pred             HHHHHhcC-Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHH
Confidence            66665511 11                  0012223444567999999999999999999999999      99999997


Q ss_pred             HHH-HHhhHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHHH
Q 008020          191 FFV-ISTGTLMAVTVLVYIQDEVGRS------WGYGICSICMFTAILIFLS  234 (581)
Q Consensus       191 ~~~-~~~g~~i~~~~~~~l~~~~g~~------~~f~i~~~~~~~~~~~~~~  234 (581)
                      ... ..+|..+|..++|++.+++|-+      ..+.++++..++..+++.+
T Consensus       343 ~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  343 SALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            765 5799999999999999887644      3444555444444444333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.61  E-value=7.4e-07  Score=94.50  Aligned_cols=166  Identities=9%  Similarity=-0.016  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGT-MHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      .++...+..++......+...+++.|+.+. .+.+....+...+.+.....++.+++|+++||+ ++|+++.++....++
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344445555665555556778899998653 244555555566777788899999999999998 999999888888777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      ..++..+..   .                     .. ......+.++..+..+|...+...+..+++.      ......
T Consensus       312 ~~ll~~~~~---~---------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~  360 (410)
T TIGR00885       312 LCLGSIFAG---G---------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAG  360 (410)
T ss_pred             HHHHHHHcC---C---------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHH
Confidence            777666541   1                     22 3455667788888888999999999998655      322322


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhccc------chhhHHHHHHHHHHHHH
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEV------GRSWGYGICSICMFTAI  229 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~------g~~~~f~i~~~~~~~~~  229 (581)
                      +..  ..+|+.+.|.+.|++.|..      +.+..|+++.++.+...
T Consensus       361 l~~--~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  405 (410)
T TIGR00885       361 LVM--AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF  405 (410)
T ss_pred             HHH--HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence            222  2399999999999999954      47888888877655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.60  E-value=3.2e-07  Score=95.40  Aligned_cols=140  Identities=13%  Similarity=0.080  Sum_probs=105.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++.+.+..++.....+.+..+++.|+++.+|++..+.+.+.....+...++.+++|+++||+ |||+.+..+....+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            456666666666667778888999999999999999999999999999999999999999998 9998888777666666


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      ..++..... +                   ..+...+.+...+.+++.|...+...+++.+..| ++      +++..++
T Consensus       305 ~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~  357 (366)
T TIGR00886       305 AFLVVLGLV-S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL  357 (366)
T ss_pred             HHHHHhcCC-C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence            555544311 0                   0024445555556666667766777788888876 35      8999998


Q ss_pred             HHHHHHhh
Q 008020          190 FFFVISTG  197 (581)
Q Consensus       190 ~~~~~~~g  197 (581)
                      .+...++|
T Consensus       358 ~~~~~~~g  365 (366)
T TIGR00886       358 VGAIGNLG  365 (366)
T ss_pred             HHHhccCC
Confidence            88777665

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.60  E-value=6.7e-07  Score=94.68  Aligned_cols=183  Identities=13%  Similarity=0.106  Sum_probs=127.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++...+.+...++.++.-..........+-++-|++..++.+++........+..+++.++.||+ |||+.++++.....
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            44667777777777777666666666666678899999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHH-HHHHHHHHHHHhccC-cccchhhhcccCCCCCChHHHhHHhh
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMG-VLYISLYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~l~glg~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      +..+++.......+                ....-.. ..+++.++..+..+. ..|..+-+.+|.+|.+.      |..
T Consensus       347 ~~~~~~~~~~~l~~----------------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~a  404 (485)
T KOG0569|consen  347 VALLLMSIALFLSN----------------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSA  404 (485)
T ss_pred             HHHHHHHHHHHHHH----------------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHH
Confidence            87776655532221                0000011 223344443333322 35788888999999999      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ++++-.....+..++-...-..+.+..|- ..|.+..+..++..+..+.
T Consensus       405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            99998887777777776777777777764 4444444443444433333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.4e-08  Score=102.43  Aligned_cols=150  Identities=19%  Similarity=0.198  Sum_probs=118.9

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020          371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS  450 (581)
Q Consensus       371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      .++++..-.+...++.|+.+++.+++.|++.          +..|..+..++.+..++..                   .
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v----------~~vG~~iW~~Av~~~~fs~-------------------~  120 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV----------IAVGIFIWTLAVFASGFSN-------------------H  120 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCcceE----------EeeHHHHHHHHHHHHHHHH-------------------H
Confidence            3456667778888999999999888877754          6778888888877776652                   4


Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG  530 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~  530 (581)
                      .|.+.+.-.+.|+|++...|...+++++.+|++.|++.+++++++..+|+.+|......+...+      +         
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~------~---------  185 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT------F---------  185 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc------c---------
Confidence            4677788899999999999999999999999999999999999999999999877766554322      1         


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 008020          531 RLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQ  564 (581)
Q Consensus       531 ~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~  564 (581)
                      ++.+.|++.++++++..++..++.++.+++..++
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            1356788888998888888888877666544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.58  E-value=2.1e-06  Score=87.88  Aligned_cols=174  Identities=15%  Similarity=0.183  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Q 008020           33 LSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGL  112 (581)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~  112 (581)
                      ..+...+...++++.--..+=+|-.+.+|++..|...++.....+..++....|++..|..++++.-.++....+++..+
T Consensus       212 ~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~l  291 (403)
T PF03209_consen  212 RFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFAL  291 (403)
T ss_pred             HHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence            34444555666777777778889999999999999999999999999999999999987668888888888888888877


Q ss_pred             HHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHH
Q 008020          113 LAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  192 (581)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (581)
                      ..++....+                     .+.+..+.+++|+|.|.+....-+.+-|+..+++      .|.+++.+..
T Consensus       292 ii~a~~~~~---------------------~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGa  344 (403)
T PF03209_consen  292 IILAGPLGS---------------------PWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGA  344 (403)
T ss_pred             HHHHHhccc---------------------chHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHH
Confidence            766644333                     7889999999999999999888899999999888      8999999999


Q ss_pred             HHHhhHHHHHHHHHHhhc----------ccchhhHHHHHHHHHHHHHHHHH
Q 008020          193 VISTGTLMAVTVLVYIQD----------EVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       193 ~~~~g~~i~~~~~~~l~~----------~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ...+...+|-.++|.+.|          ..+|..+|.+-.++.++++.++.
T Consensus       345 aQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  345 AQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999898888887644          23577788877777666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.57  E-value=1.4e-06  Score=90.56  Aligned_cols=177  Identities=14%  Similarity=0.081  Sum_probs=138.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      |.+|...+........++..-.-.+.|....+   +.+....|.+.+.-.+.-++.-.+..++-+|+ |.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence            56777776666666666666666777776544   34455677788888888888999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      .++=.+.+++++                        +++.+.+.+.++++-.+.....+.-|+++.+|++-      .++
T Consensus       299 ~~iRi~~~~~~~------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt  348 (412)
T PF01306_consen  299 MAIRIIGSGFAT------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SAT  348 (412)
T ss_dssp             HHHHHHHHHT--------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHH
T ss_pred             HHHHHHHHhhhc------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHH
Confidence            888888888773                        28889999999999999999999999999999887      777


Q ss_pred             HHHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020          186 FFSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                      ...+ ++....+|..+.+.++|++.|+.|++..|++.+...+...++..+..
T Consensus       349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            7777 56778899999999999999999999998876666555555544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.57  E-value=1.1e-06  Score=87.54  Aligned_cols=170  Identities=13%  Similarity=0.057  Sum_probs=115.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-----------------CCChhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGT--M-----------------HLPSATSANIVTDFMGTSFLLCLLGGFLA   89 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~G~la   89 (581)
                      |..+.+..+-|.+.+.+|+.+-......+..  .                 ..+....-.=..+..+.-+-+.++.+++.
T Consensus       326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv  405 (528)
T KOG0253|consen  326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV  405 (528)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence            4566777778888999998876544333211  1                 11222222223445667778889999999


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcc
Q 008020           90 DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGT  169 (581)
Q Consensus        90 D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~  169 (581)
                      ||+ |||+.+..+++++.+..+++..+.. ++                   ....+++++|+++.    +.+.+++.|.-
T Consensus       406 erl-GRKkTMal~l~~f~iflfll~~c~~-rn-------------------~~tvllf~arafis----g~fqvaYvYtP  460 (528)
T KOG0253|consen  406 ERL-GRKKTMALSLILFGIFLFLLTTCKT-RN-------------------AYTVLLFTARAFIS----GAFQVAYVYTP  460 (528)
T ss_pred             HHh-cchhHHHHHHHHHHHHHHHHHHhcC-cc-------------------hhHHHHHHHHHHHh----chheEEEEecC
Confidence            997 9999999999999988877765522 21                   22456778887763    44567889999


Q ss_pred             cCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          170 DQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       170 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      |.+|...      |+.+.|.-.....+|+++.|+++ ...+ -.-..+..+...+.+++.+.
T Consensus       461 EVyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  461 EVYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             cccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHH
Confidence            9999998      99999998888999999999998 3222 22233333444444444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.51  E-value=5.1e-06  Score=87.50  Aligned_cols=144  Identities=13%  Similarity=0.010  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 008020           44 STMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLR  123 (581)
Q Consensus        44 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~  123 (581)
                      .........+.|+++.+|++..+.+.+......+..++.++.+++.||+ +++...  ......++.+..........  
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~--  296 (394)
T PRK11652        222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV--  296 (394)
T ss_pred             HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc--
Confidence            3333344566788888999999999988888888888999999999998 733322  22222222222111100000  


Q ss_pred             CCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHH
Q 008020          124 PPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVT  203 (581)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~  203 (581)
                                       .+.+.+++...+.++|.+...|...++..|.+| ++      ++...++.+...++|+.+++.
T Consensus       297 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~  352 (394)
T PRK11652        297 -----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAAL  352 (394)
T ss_pred             -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHH
Confidence                             124556777888899999999999999989887 35      788888988888999999999


Q ss_pred             HHHHhhcccchhh
Q 008020          204 VLVYIQDEVGRSW  216 (581)
Q Consensus       204 ~~~~l~~~~g~~~  216 (581)
                      +++.+.....+..
T Consensus       353 ~~~~~~~~~~~~~  365 (394)
T PRK11652        353 LSAMLPQTGQFSL  365 (394)
T ss_pred             HHHHccCCchHHH
Confidence            9988866544443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.50  E-value=3e-06  Score=80.75  Aligned_cols=93  Identities=24%  Similarity=0.232  Sum_probs=70.5

Q ss_pred             HHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccc
Q 008020           54 TYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT  133 (581)
Q Consensus        54 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (581)
                      .|+-+++++...+.+.+..+......+...+.|.++||- |||+.-+.-.+    -.+++.+..                
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtyci----tYiLsCiTK----------------  119 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCI----TYILSCITK----------------  119 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehH----HHHHHHHhh----------------
Confidence            466778999999999999888888889999999999998 99996544433    334443331                


Q ss_pred             cccCCchhhHHHHHHHHHHHHHhccCcccchhhh-cccCC
Q 008020          134 KCQHASGIQMGVLYISLYLIALGTGGLKSSVSGF-GTDQF  172 (581)
Q Consensus       134 ~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~-~~~~~  172 (581)
                           +.+++-+++++|++-|+..+...++..+. +.|..
T Consensus       120 -----hSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  120 -----HSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             -----cCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence                 12348889999999999999888777664 45544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.49  E-value=2.6e-06  Score=74.65  Aligned_cols=132  Identities=20%  Similarity=0.249  Sum_probs=91.5

Q ss_pred             hHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHH
Q 008020          378 FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQ  457 (581)
Q Consensus       378 ~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  457 (581)
                      ..++.++..++.+++.++..+|+          .+..+..+..++.+.....                   .+.+.+...
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~----------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~   57 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKP----------VLLVGLFIFVLSTAMFALS-------------------SNITVLIIA   57 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhH----------HHHHHHHHHHHHHHHHHHh-------------------ccHHHHHHH
Confidence            34555666777777766554442          2455555555555544432                   133445566


Q ss_pred             HHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHH
Q 008020          458 FFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYG  537 (581)
Q Consensus       458 ~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~  537 (581)
                      .++.+++.+...+..+.++.|..|++.|++.+++.+....++..+++.+.+.+.+.                .++.+.|+
T Consensus        58 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~  121 (141)
T TIGR00880        58 RFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGWRAPFL  121 (141)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cchHHHHH
Confidence            78889999999999999999999999999999999999999999999998876421                12245566


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 008020          538 LLAALSFINFGLFLLCA  554 (581)
Q Consensus       538 ~~~~~~~i~~~~~~~~~  554 (581)
                      +.+...++..+..++..
T Consensus       122 ~~~~~~~~~~~~~~~~~  138 (141)
T TIGR00880       122 FLAILALAAFILLAFLL  138 (141)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            66666666666555543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.35  E-value=1.6e-05  Score=84.38  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=112.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++...+..++....++.+...+|.|+++.+|++..+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            4566666777777777888888889999999999999999988778888888877777776554 444444443344444


Q ss_pred             HHHHHHHhhc-CCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          109 GTGLLAISTK-QPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      +.++...... .+.                    ....++++.++.++|.+...|+.....-.. .+..      ++++.
T Consensus       297 g~~l~~~~~~~~~~--------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al~~-~~~~------~G~a~  349 (413)
T PRK15403        297 GLALLIVGNLLWPH--------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTLFS-NNLP------KGTVS  349 (413)
T ss_pred             HHHHHHHHHHHccc--------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCC------CcHHH
Confidence            4443332210 011                    133356778888889888888887533221 2223      67777


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFT  227 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~  227 (581)
                      +.++.....+..+++.+++++..+ +-.++|.+..++..+
T Consensus       350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            777777777888888888888664 456666555444333

>PRK11462 putative transporter; Provisional

Probab=98.33  E-value=3.4e-05  Score=83.15  Aligned_cols=161  Identities=10%  Similarity=0.016  Sum_probs=97.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |....++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~  305 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV  305 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3444444445555554444444444444444443 33445667778888899999999999998 999887655544433


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH--
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--  186 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--  186 (581)
                      ..++..+.   +.                   .....+++..++.|++.+...+...++++|..+.++- +.++|..+  
T Consensus       306 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~-~tG~r~~g~~  362 (460)
T PRK11462        306 ISLAMFFV---PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW-CNGKRLTGIS  362 (460)
T ss_pred             HHHHHHHh---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH-hcCCCchHHH
Confidence            33333222   11                   1122344455666777777777778888988775432 22223333  


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccch
Q 008020          187 FSRFFFVISTGTLMAVTVLVYIQDEVGR  214 (581)
Q Consensus       187 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~  214 (581)
                      ++.......+|..+|+.++|++.+..|+
T Consensus       363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        363 FAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4556677889999998888877554444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.32  E-value=0.00034  Score=72.60  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=112.2

Q ss_pred             HHHHHHHhccc-cCCChhhhh-hHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 008020           49 AVNLVTYLGGT-MHLPSATSA-NIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPP  126 (581)
Q Consensus        49 ~~~l~~yl~~~-l~~~~~~~~-~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (581)
                      -+++.+|+.+. .|++..|.. -+.-...-......++...++|.. |.|++++++.+...+...++.+..+        
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s--------   93 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS--------   93 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc--------
Confidence            36688899887 899999876 344555667777778888999997 9999999999888888877776632        


Q ss_pred             CCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          127 CQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                                      ....-+..++.|++.+. ..+..+++-...|+++      -.++.+....+.-+|..++.+++-
T Consensus        94 ----------------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   94 ----------------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             ----------------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            67778888888888776 4666777777777665      555666666666677777766665


Q ss_pred             Hhhc--ccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          207 YIQD--EVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       207 ~l~~--~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      .+..  ...+...++++.....+++++.++.
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            5443  3346666677777666666665553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=3.7e-06  Score=84.93  Aligned_cols=145  Identities=21%  Similarity=0.172  Sum_probs=118.7

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020          371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS  450 (581)
Q Consensus       371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      .+++-....+..++..|+++..+++++.|..          +.+|+.++..+.+++++..                   +
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ip----------m~~Gl~vmf~sTilFafg~-------------------s  158 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIP----------MVAGLFVMFLSTILFAFGN-------------------S  158 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhccccH----------HHHHHHHHHHHHHHHHHcc-------------------h
Confidence            3455566678888889999988887777643          8999999999998888762                   4


Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcch-hHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM-KTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK  529 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~  529 (581)
                      +..++++-.+.|+|.++.++...+++++.+|++. ||+++|+....-++|..+||.+.|.+++..++             
T Consensus       159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk-------------  225 (464)
T KOG3764|consen  159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK-------------  225 (464)
T ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-------------
Confidence            4577888899999999999999999999999776 69999999999999999999999988765432             


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          530 GRLDCFYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                         ..-|+++++++++...+-++..+.++.+
T Consensus       226 ---~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  226 ---SAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             ---cCcHHHHHHHHHHHHHHHHheeCccccC
Confidence               3458999999999888877776554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.30  E-value=1.3e-05  Score=86.57  Aligned_cols=181  Identities=8%  Similarity=-0.064  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChhh----hhhHHHHHHHHHHHHHHHHH----HHhhhcccchHHH--HHHH
Q 008020           34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSAT----SANIVTDFMGTSFLLCLLGG----FLADSFLGRYRTI--AIFA  103 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~G----~laD~~~Grr~~l--~~~~  103 (581)
                      +++...+....+.-..+.++.|..+..+.+...    .+++.+...+...+.+++..    ++.||..+.+...  .+|.
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~  356 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM  356 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            333334444444444555777776654443222    55666666666666666644    4555521334433  6677


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++..++.+..++.....               +.....+.+.+.+..++.++|.....|...+++++..|++.      |
T Consensus       357 ~l~~~~~~~~~~~~~~~---------------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~  415 (475)
T TIGR00924       357 LFCGASFLTFAASIWFA---------------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------M  415 (475)
T ss_pred             HHHHHHHHHHHHHHhhc---------------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------H
Confidence            77777776665431100               01112457889999999999999999999999999999998      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      ++.++.+.....+|..+++.+.....+..+|...|...++..++..++.+..
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888877666678877776665555444444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.30  E-value=1.6e-05  Score=77.35  Aligned_cols=158  Identities=13%  Similarity=0.136  Sum_probs=107.8

Q ss_pred             HHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Q 008020           51 NLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQAT  130 (581)
Q Consensus        51 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (581)
                      ...+.+++.+|+|..|.+.+..+..++..++ ++.|.+.|++ |.+.++.++.+...+|..++.++....          
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~----------   90 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR----------   90 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc----------
Confidence            4456788999999999999999999998875 7779999999 999999999999999998877663211          


Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH-HHhh
Q 008020          131 DITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL-VYIQ  209 (581)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~-~~l~  209 (581)
                             .+....+.+++...+.+.|.+.+.+.+.....+.||+ +      ||++.++.-....+++.+=..+. .+..
T Consensus        91 -------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   91 -------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             -------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                   1113467777777777777666656655556688984 6      99999987776666664433333 3333


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHc
Q 008020          210 DEVGRSWGYGICSICMFTAILIFLSG  235 (581)
Q Consensus       210 ~~~g~~~~f~i~~~~~~~~~~~~~~~  235 (581)
                      +. .-...+.++....++.++...+.
T Consensus       157 ~~-~~~fll~la~~~~~v~l~~~~~v  181 (250)
T PF06813_consen  157 DD-PSSFLLFLAVLPAVVCLVAMFFV  181 (250)
T ss_pred             CC-hHHHHHHHHHHHHHHHHHHhhhe
Confidence            32 12223334444444444444443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.29  E-value=2.3e-05  Score=77.80  Aligned_cols=153  Identities=22%  Similarity=0.248  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhccccCCCh--hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCC
Q 008020           43 LSTMGIAVNLVTYLGGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQP  120 (581)
Q Consensus        43 ~~~~~~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~  120 (581)
                      .........++.+.. .++.+.  .+.++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+  
T Consensus        16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--   91 (338)
T COG0477          16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--   91 (338)
T ss_pred             HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence            333333344444444 334344  4788899999999999999999999999 9998888887765555555555421  


Q ss_pred             CCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCC-CChHHHhHHhhHHHHHHH-HHHhhH
Q 008020          121 QLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF-VISTGT  198 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~  198 (581)
                                          .....+.+.|.+.|++.+...+...+++.|.+|+ +.      |+...+.... ...+|.
T Consensus        92 --------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  145 (338)
T COG0477          92 --------------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGL  145 (338)
T ss_pred             --------------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHH
Confidence                                2377888999999999999999999999999987 44      8888888777 577888


Q ss_pred             HHHHHHHHHhhcc--cchhhHHHHHHHHH
Q 008020          199 LMAVTVLVYIQDE--VGRSWGYGICSICM  225 (581)
Q Consensus       199 ~i~~~~~~~l~~~--~g~~~~f~i~~~~~  225 (581)
                      .++|.+++.+...  .+|+..|.+.....
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         146 ALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            8888777766543  56888665554443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.22  E-value=2.3e-05  Score=82.47  Aligned_cols=161  Identities=16%  Similarity=0.115  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+.++++..++...+.-.....+..|.+-.++.+.............+..++.++..++++|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4555566667777666666667777788888898888888888888888888899999999998 999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH-hhHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM-AYFF  187 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~  187 (581)
                      +.++..+...                      .+..++++..++.++|.+...+..+++++|..+..+-+++.+| |-.+
T Consensus       315 ~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~  372 (467)
T COG2211         315 GYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY  372 (467)
T ss_pred             HHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence            9998887731                      3478888888999999999999999999999886553333323 3334


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhccc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEV  212 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~  212 (581)
                      +.+....-+|..++..+.|++....
T Consensus       373 s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         373 SGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5566666677777776766654433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.16  E-value=0.00079  Score=69.86  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=50.4

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI  509 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~  509 (581)
                      +.|.+++..+..|+..+..+...+..+.|..|++.|..++|.......+|..++..+.-.
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            445555667778998899998889999999999999999999999999998888776543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.15  E-value=4.2e-05  Score=77.85  Aligned_cols=163  Identities=16%  Similarity=0.160  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++.-.+..|+.--.--.+-.+++.|+.+..|++..+++...+.+..+..++..++-++-.|+ ...|.+.+..+...+-
T Consensus       237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill  315 (422)
T COG0738         237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344455555555545555668899999988999999999999999999999999999999998 8888888777655554


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+..++..                         -..-..+..+.|+..+.++|+..+...+..+++..     .+   +-
T Consensus       316 ~~~~~l~~-------------------------g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-----~~---s~  362 (422)
T COG0738         316 LLAVALIG-------------------------GVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-----VG---SG  362 (422)
T ss_pred             HHHHHHhc-------------------------ChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-----cc---ce
Confidence            44444441                         12334556678899999999999999999995441     22   22


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccchhhHHH-HHHHHHH
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVGRSWGYG-ICSICMF  226 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~-i~~~~~~  226 (581)
                      .-....+|+.+-|.+-|++.|+.|-...+. ++.+|.+
T Consensus       363 ~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l  400 (422)
T COG0738         363 LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL  400 (422)
T ss_pred             eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            223455889999999999999998777666 4444433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.06  E-value=2.9e-05  Score=60.95  Aligned_cols=70  Identities=21%  Similarity=0.131  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      +-...++...+.-.+.++++.|++ +.|++..|.|.+.++..+...++++++|+++||+ +|++.++....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            334455666666678899999998 5899999999999999999999999999999999 888877665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.06  E-value=0.003  Score=66.71  Aligned_cols=189  Identities=10%  Similarity=-0.050  Sum_probs=100.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |..+.+-..+++...+--++..-.+.|+.+-+.-+.--.+..-..-.+...+..+..|...||. .|.+++..+.+..-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            4557788888888888888888888888866543333333333444666777778889999998 999998888764333


Q ss_pred             H----HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHH-HHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          109 G----TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLI-ALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       109 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      +    ..++......+..           +  ..+......+++...+. ++..=.......+.=-|+...=..+....+
T Consensus        81 sv~~s~~~~~~l~~~~~~-----------~--~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L  147 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSS-----------S--SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL  147 (432)
T ss_pred             HHHHHHHHHHHHHhCCcc-----------c--cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence            2    2222222111110           0  00011122222222222 221111111222222333221000001125


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILI  231 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~  231 (581)
                      .+..+...-.=.+.-++||++.|.+....+......+.+...++.+..
T Consensus       148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            555555544455778999999999988778776655554444444443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.04  E-value=1.3e-05  Score=86.44  Aligned_cols=146  Identities=8%  Similarity=-0.158  Sum_probs=112.6

Q ss_pred             ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccc
Q 008020           57 GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQ  136 (581)
Q Consensus        57 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (581)
                      ++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++.+.........+.              
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~--------------  344 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL--------------  344 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc--------------
Confidence            457899999999999999999999999999999998 99999999998888877554322110000              


Q ss_pred             CCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc---
Q 008020          137 HASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG---  213 (581)
Q Consensus       137 ~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g---  213 (581)
                      .....+.+.+....++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.++.|   
T Consensus       345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~  418 (468)
T TIGR00788       345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITC  418 (468)
T ss_pred             ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            0000112344555667788888888888999999999999      9999999999999999999999999988777   


Q ss_pred             --hhhHHHHHHH
Q 008020          214 --RSWGYGICSI  223 (581)
Q Consensus       214 --~~~~f~i~~~  223 (581)
                        ++..+....+
T Consensus       419 ~~~~~~~~~i~i  430 (468)
T TIGR00788       419 DNSNNLWLLILG  430 (468)
T ss_pred             ccccchHHHHHH
Confidence              6555543333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.03  E-value=4.3e-05  Score=82.84  Aligned_cols=105  Identities=15%  Similarity=0.170  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhhhhhhh-ccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHH
Q 008020          379 VAAILITLGAYDRLIIP-LLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQ  457 (581)
Q Consensus       379 ~~~~i~~~~l~~~~~~~-~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  457 (581)
                      .....+..++.+++.|+ +++|+          .+.+|.++..++.+.+++..                  .....+.+.
T Consensus        60 ~~~~~~~~~~~G~laDr~~G~r~----------~~~~g~~~~~~g~~~~~~~~------------------~~~~ll~~~  111 (489)
T PRK10207         60 AALVYGLISIGGYVGDHLLGTKR----------TIVLGAIVLAIGYFMTGMSL------------------LKPDLIFIA  111 (489)
T ss_pred             HHHHHHHHhhHHHhhhhccchHH----------HHHHHHHHHHHHHHHHHHhc------------------cchhHHHHH
Confidence            33444555677777766 55553          37888888888877666531                  111224456


Q ss_pred             HHHHHHHHHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 008020          458 FFLVGSGEGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       458 ~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~  511 (581)
                      .++.++|.++..|...+++.|++|++  .|+.+.+++++..++|..+|+.+.|.+.
T Consensus       112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            77789999999999999999999987  4588999999999999999999998875

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.02  E-value=0.00012  Score=79.63  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcc--ccCCCh------hhhhhHHHHHHHHHHHHHHHH----HHHhhhcccchHHHHHHHHH
Q 008020           38 EICERLSTMGIAVNLVTYLGG--TMHLPS------ATSANIVTDFMGTSFLLCLLG----GFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~--~l~~~~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Grr~~l~~~~~~  105 (581)
                      .+.....+|.+...++.++..  ..+.+.      ...++..+...+...+..++.    +++.||+ +..+.+.++.++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            334455566666666655432  111111      113444455554455555554    6667776 777888899999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      ..++.+..++......               .+...+.+.+....+++++|.++..|...+++.+..|++.      |++
T Consensus       360 ~~l~f~~l~~~~~~~~---------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~  418 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN---------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGF  418 (500)
T ss_pred             HHHHHHHHHHHHHhcC---------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHH
Confidence            9998887766633111               0111335578889999999999999999999999999998      999


Q ss_pred             HHHHHHHHHHhhHHHHHHHHH
Q 008020          186 FFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~  206 (581)
                      .++.+.....+|..++..+..
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999888777777766655554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.00  E-value=5.8e-05  Score=81.13  Aligned_cols=134  Identities=13%  Similarity=0.129  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHhhhhhhhhc-cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020          378 FVAAILITLGAYDRLIIPL-LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIP  456 (581)
Q Consensus       378 ~~~~~i~~~~l~~~~~~~~-~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  456 (581)
                      ......+..++.+++.||+ ++|+          .+.+|.++..++.+.++...                  .+...+..
T Consensus        54 ~~~~~~l~~ligG~LaDRilGrrr----------~iliG~il~~lg~lll~~~~------------------~~~~~~~l  105 (493)
T PRK15462         54 YCSLVYVTPILGGFLADKVLGNRM----------AVMLGALLMAIGHVVLGASE------------------IHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcHH----------HHHHHHHHHHHHHHHHHHhh------------------cchhHHHH
Confidence            3444455666777777776 4442          26778888777765554221                  11112333


Q ss_pred             HHHHHHHHHHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhH
Q 008020          457 QFFLVGSGEGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDC  534 (581)
Q Consensus       457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~  534 (581)
                      ...+..++.++..+...+++.|.+|++  .|+++.++++...++|+.++|.+.+.+.+.                .+++.
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~----------------~Gw~~  169 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE----------------YSWAM  169 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh----------------hChHH
Confidence            344555677777787888999999976  799999999999999999999999877421                12356


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc
Q 008020          535 FYGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       535 ~f~~~~~~~~i~~~~~~~~~~  555 (581)
                      .|.+.++..+++++.+++..+
T Consensus       170 ~F~iaaigm~l~li~~~~~~~  190 (493)
T PRK15462        170 GFGLAAVGMIAGLVIFLCGNR  190 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            677665555555555544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.98  E-value=0.00015  Score=77.65  Aligned_cols=208  Identities=8%  Similarity=-0.069  Sum_probs=141.9

Q ss_pred             cccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChh------h----hhhHHHHHHHHHHHHHHHHHHHhhh
Q 008020           23 SKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGG-TMHLPSA------T----SANIVTDFMGTSFLLCLLGGFLADS   91 (581)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD~   91 (581)
                      ..+..+|..+.++..+++..++++.+..+...|+.+ .++-++.      +    ..+....+.+.+.+..++.-++.+|
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999999999999874 3443221      1    1233444555556666777888999


Q ss_pred             cccc-hHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhccc
Q 008020           92 FLGR-YRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTD  170 (581)
Q Consensus        92 ~~Gr-r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~  170 (581)
                      + |+ |++..++.++.+++.....+.++.++-.+ ++++-+  ..-.++....+..++...+.|+..+.....-.+++++
T Consensus       332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~  407 (477)
T TIGR01301       332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDG--ESLPPPTGIKASALIVFAILGIPLAITYSIPFALASI  407 (477)
T ss_pred             h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccc--cccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence            8 85 66668888888888777665532111000 000000  0000111114667777788999999999999999999


Q ss_pred             CCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccc--hhhHHHHHHHHHHHHHHHHHHcccc
Q 008020          171 QFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVG--RSWGYGICSICMFTAILIFLSGTRR  238 (581)
Q Consensus       171 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~f~i~~~~~~~~~~~~~~~~~~  238 (581)
                      ..+++..+    .|..+|++|.+..+..++..+..|.+.+..|  ..+.+.++++..+++.+..+...|+
T Consensus       408 ~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       408 RSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            99965411    6999999999999999999887777655554  5567778888887777666665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.94  E-value=6.7e-05  Score=83.87  Aligned_cols=132  Identities=14%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----------
Q 008020          371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVK--RLAVA-----------  437 (581)
Q Consensus       371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~--~~~~~-----------  437 (581)
                      .+++.+...++..+..++++++.++..||+          .+.+|.++++++.++.++.+-.  ++...           
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~----------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~  139 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHRPI----------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSS  139 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCcce----------EEEecHHHHHHHHHHHhChHHhcCCccccccccccccccc
Confidence            345556666777777777777766554442          2677888888887776654211  00000           


Q ss_pred             -----hhcCC--C----------CCCc--eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhH
Q 008020          438 -----KANGT--T----------GTTL--PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSL  498 (581)
Q Consensus       438 -----~~~~~--~----------~~~~--~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l  498 (581)
                           ..+..  +          +...  ...+..+++.-++.|+|.+...+...+++.|.+|++.|+.+.|+++....+
T Consensus       140 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~i  219 (633)
T TIGR00805       140 ANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVF  219 (633)
T ss_pred             cccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHh
Confidence                 00000  0          0000  113445667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 008020          499 GFFFSSLLVSIVKA  512 (581)
Q Consensus       499 g~~~g~~~~~~i~~  512 (581)
                      |..+|+.+.+.+..
T Consensus       220 G~~lG~llgg~l~~  233 (633)
T TIGR00805       220 GPAFGYLLGSFCLQ  233 (633)
T ss_pred             hhHHHHHHHHHHHh
Confidence            99999999987764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.94  E-value=5.6e-05  Score=81.16  Aligned_cols=161  Identities=12%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh----cccchHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADS----FLGRYRTIAIFATV  105 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grr~~l~~~~~~  105 (581)
                      .+|...+..+|.....|++..++|.|+++..|++..+++.+...+.++..++.+++|+++||    . .+|........+
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~~  352 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLCL  352 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHH
Confidence            67999999999999999999999999998778999999999999999999999999999999    5 666666666554


Q ss_pred             HHH-HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          106 QTF-GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       106 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +.+ |.........                        ......+.+....+.+...++...-..+....+.     +|-
T Consensus       353 ~~~~g~~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~  403 (495)
T KOG2533|consen  353 YAIIGAISLLAAAV------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KAL  403 (495)
T ss_pred             HHHHHHHHHHhhcc------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhH
Confidence            444 4343333311                        1222222222333333344555555566665443     144


Q ss_pred             hHHHHHHHHHHhhH-HHHHHHHHHhhcccchhhHHHH
Q 008020          185 YFFSRFFFVISTGT-LMAVTVLVYIQDEVGRSWGYGI  220 (581)
Q Consensus       185 ~~~~~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~f~i  220 (581)
                      ...+....+.+.++ ..+++..+.....++|...|.+
T Consensus       404 ~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  404 TTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            44444444444444 4444445555666788888853

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.94  E-value=0.018  Score=61.50  Aligned_cols=167  Identities=10%  Similarity=-0.002  Sum_probs=100.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ChhhhhhHHHHHHHHHHHH-HHHHHHHhhhcccchHHHH
Q 008020           27 GWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHL-----PSATSANIVTDFMGTSFLL-CLLGGFLADSFLGRYRTIA  100 (581)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~-----~~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grr~~l~  100 (581)
                      .+|.++...+..+|..+.++...+     +++.+..     +.....++.+...+...+. .++.+++++|+ +|++++.
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~   78 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY   78 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence            345667777777777777776654     4555554     3356677777665555555 78889999998 9999988


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCccccccCCchh--------hHHHHHHHHHHHHHhccCccc-chhhhc
Q 008020          101 IFATVQTFGTGLLAISTKQPQ---LRPPPCQATDITKCQHASGI--------QMGVLYISLYLIALGTGGLKS-SVSGFG  168 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~glg~g~~~~-~~~~~~  168 (581)
                      +....+..-.+++++.-. |.   +.|...   -.......+..        ..|...+.-+...+-.....+ ..++++
T Consensus        79 ~~~~~F~~~f~lF~~vl~-p~~~~~~p~~~---~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fa  154 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIY-PLSDLLHPTAL---ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHHh-cchhhcCCcHH---HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877666665555554411 11   000000   00000000000        011111111112222222333 678899


Q ss_pred             ccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhh
Q 008020          169 TDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQ  209 (581)
Q Consensus       169 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~  209 (581)
                      .|.+..++      -.|.++++..+.|+|..+++.+..++.
T Consensus       155 ndi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888      889999999999999999998888775

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.85  E-value=6.4e-05  Score=78.93  Aligned_cols=170  Identities=8%  Similarity=-0.030  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 008020           38 EICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIST  117 (581)
Q Consensus        38 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~  117 (581)
                      .+...++.-.+..+|--++ ++++..+.-.|.+......+-++.-++.+++-.|+ |+-+++..++....+=.+..+...
T Consensus       380 av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  380 AVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc
Confidence            3344444444555554444 46666666667666666777777888889999998 999999999988888777766662


Q ss_pred             cCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHH-HHh
Q 008020          118 KQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV-IST  196 (581)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~  196 (581)
                                              ++|..+..-+++|+-.+..+.++.+|+++..|++-      |.++-++.... -.+
T Consensus       458 ------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~Gl  507 (618)
T KOG3762|consen  458 ------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGL  507 (618)
T ss_pred             ------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhccc
Confidence                                    27888888999999999999999999999999999      88888875554 568


Q ss_pred             hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccc
Q 008020          197 GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRY  239 (581)
Q Consensus       197 g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~  239 (581)
                      |-.+|.+++|.+.+.+|=+..|.+.++..++.++.+.......
T Consensus       508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8899999999999999988888888877777666655554433

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.80  E-value=2.5e-07  Score=99.36  Aligned_cols=180  Identities=16%  Similarity=0.083  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .....+....+..+..+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||+.++.+....+++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            445555555555555544555555556666676666  2223344456667777878999998 9999999998887777


Q ss_pred             HHHHH-HhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhcc-CcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          110 TGLLA-ISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTG-GLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       110 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      .+.++ .....+.               .+...+... .+...+...+.+ +..+....+..|.+|.+.      |+++.
T Consensus       330 ~~~~~~~~~~~~~---------------~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~  387 (451)
T PF00083_consen  330 SLILGIIFFLGVS---------------SSSWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGI  387 (451)
T ss_pred             ccccccccccccc---------------ccccccccc-ceeeeeccccccccccccccccccccccccc------ccccc
Confidence            66554 1100010               000001111 111222212222 345677788899999999      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      ++.+....+++.+++.+..++.+..+-...|.+...+.++..+..++
T Consensus       388 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  388 GLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             ccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            99888888999999888888777665233444444443444433333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.00037  Score=72.05  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHH-H
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSF---LGRYRTIAIFA-T  104 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grr~~l~~~~-~  104 (581)
                      +..+.+..+.+...+++-.=..++++|++ .+|.+.+..+.+-.+..+...+.+|+.|..+||+   +||||-++... .
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56677777788888888888889999987 7899999999999999999999999999999984   48887766554 4


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCC----chhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHH
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHA----SGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  180 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~  180 (581)
                      ..+++..+...++.+..           ..++..    ..-....++++..|.=++.-.....+-++.+|+..+++    
T Consensus       111 ~i~~~l~Lig~aaDig~-----------~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~----  175 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGL-----------LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA----  175 (498)
T ss_pred             HHHHHHhhhhhHhhhhH-----------HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh----
Confidence            55666666665533221           111111    11335566777777777777778888899999998776    


Q ss_pred             hHHhh-HHHHHHHHHHhhHHHHHHHHHHh
Q 008020          181 TQMAY-FFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       181 ~~r~~-~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                        +.+ +.+++...+.+|+.+|..++++.
T Consensus       176 --~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  176 --KKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             --hhhccchhHHHHHHhcceeeeeccccc
Confidence              333 88999999999999998777654

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.0004  Score=75.96  Aligned_cols=154  Identities=15%  Similarity=0.009  Sum_probs=92.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      ..+|..........+.+++.+....+....+-+..|.+... .....+..+...++..++.++.||+ |||+.++.+...
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34455555666666666655444444444444566666444 4555566777778888889999999 999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      +.++.++++........         +..  .........+....+.......+..|..+.+.+|.+|.+.      |++
T Consensus       369 m~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~  431 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALY---------YPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK  431 (513)
T ss_pred             HHHHHHHHHHHHHHhcc---------CCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence            99998887766332110         000  0111112222222222333333445677778899999988      888


Q ss_pred             HHHHHHHHHHhhH
Q 008020          186 FFSRFFFVISTGT  198 (581)
Q Consensus       186 ~~~~~~~~~~~g~  198 (581)
                      +.++-.....+..
T Consensus       432 ~~s~~~~~n~~~~  444 (513)
T KOG0254|consen  432 GASLAVAVNWLWN  444 (513)
T ss_pred             hHHHHHHHHHHHH
Confidence            8877544433333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.70  E-value=0.00067  Score=74.13  Aligned_cols=139  Identities=14%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             chhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020          371 AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS  450 (581)
Q Consensus       371 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      ..++...+.+...+..|+.+++.|-++||..          ++.|.++..+|.++.+..                   .+
T Consensus        80 ~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~----------~i~g~~l~vvG~Iv~atA-------------------~~  130 (599)
T PF06609_consen   80 WSWFSTAWTLASAVSFPFVGRLSDLFGRRYF----------FIIGSLLGVVGSIVCATA-------------------QN  130 (599)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHhcchHH----------HHHHHHHHHhHHHHhhcC-------------------Cc
Confidence            4556667778888888999999888887754          678888888888877644                   24


Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG  530 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~  530 (581)
                      ...++...++.|+|.+.... ....+.|..|.+.|+.+.++...........++.+...+.      .+.+|        
T Consensus       131 ~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~------~~~~W--------  195 (599)
T PF06609_consen  131 MNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA------AHSGW--------  195 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc------cCCCc--------
Confidence            45678888999998776664 4556899999999988877776555444445555543321      11345        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020          531 RLDCFYGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       531 ~~~~~f~~~~~~~~i~~~~~~~~~~  555 (581)
                        .|.|++.+++..++++..+++.+
T Consensus       196 --Rw~~~~~~i~~~i~~vl~~~fY~  218 (599)
T PF06609_consen  196 --RWIFYIFIIWSGIALVLIFFFYF  218 (599)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHhC
Confidence              67788888777777666554433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PTZ00207 hypothetical protein; Provisional

Probab=97.58  E-value=0.0012  Score=72.46  Aligned_cols=129  Identities=13%  Similarity=0.075  Sum_probs=86.8

Q ss_pred             HHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHH
Q 008020          386 LGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGE  465 (581)
Q Consensus       386 ~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~  465 (581)
                      .+..+++.|++++|.          .+.++.++..++.++.++....             ....+.+.+.+..++.|+|.
T Consensus        78 ~lp~G~L~Dr~G~R~----------vllig~ll~~iG~ll~ala~~~-------------~i~~s~~~l~l~r~l~G~G~  134 (591)
T PTZ00207         78 LLPYSFIYDYLGPRP----------IFVLSMTVFCLGTLLFALTFQE-------------VIEGSVVRLSVYNGLMTLGC  134 (591)
T ss_pred             HHHHHHHHHHhCcHH----------HHHHHHHHHHHHHHHHHHHhcc-------------cccCcHHHHHHHHHHHHHHH
Confidence            334566666655553          3788888888888877764211             00135566677778899999


Q ss_pred             HHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHH
Q 008020          466 GFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFI  545 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i  545 (581)
                      +..++.....+.+.+| +.||+++|+......+|+.+.+.+...+..       .+          ...+|++.+++.++
T Consensus       135 ~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-------~~----------~~~~fl~l~vl~~v  196 (591)
T PTZ00207        135 MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-------DN----------TSAYFFFLMSFALV  196 (591)
T ss_pred             HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh----------HHHHHHHHHHHHHH
Confidence            9888888888899887 679999999999999999765444433221       01          23456666766666


Q ss_pred             HHHHHHhhhc
Q 008020          546 NFGLFLLCAS  555 (581)
Q Consensus       546 ~~~~~~~~~~  555 (581)
                      ..++.+.+.+
T Consensus       197 v~ll~~~~vr  206 (591)
T PTZ00207        197 VGILAIVFMR  206 (591)
T ss_pred             HHHHHHhhee
Confidence            6555555444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.00016  Score=74.62  Aligned_cols=178  Identities=12%  Similarity=0.045  Sum_probs=113.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhh--------HHHHHHHHHHH-HHHHHHHHhhhcccchHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSAN--------IVTDFMGTSFL-LCLLGGFLADSFLGRYRTI   99 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~--------~~~~~~~~~~~-~~~~~G~laD~~~Grr~~l   99 (581)
                      +.++......|....++|+...+...-++ ..++.+.+...        ...+...++.+ +-.+..++.|++ |||+..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            34444555556666666666555444333 34444433322        22222223332 556667789998 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH-HHHHhccCcccchhhhcccCCCCCChH
Q 008020          100 AIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY-LIALGTGGLKSSVSGFGTDQFDEKDEK  178 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~glg~g~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +-+.+++.+..+..+..-                  ++ ...... +++.-. .+-++.-+-..+...+.+|.+|.+.  
T Consensus       382 ~~GF~~~~i~~~~~~~~y------------------~~-~~~~~G-f~v~y~l~~ff~NFGPn~ttfivpaE~FParv--  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPY------------------NQ-LENTIG-FVVLYSLTFFFGNFGPNATTFIVPAEIFPARV--  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCc------------------cc-ccccCc-eeehHHHHHHHHhcCCCceeEEeehhhchHHH--
Confidence            999988887776665441                  11 111111 222222 2333333444455556699999988  


Q ss_pred             HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc-----ccchhhHHHHHHHHHHHHHHHHHH
Q 008020          179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD-----EVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~-----~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                          |++.-++...+.-.|+++|.....++.+     ..|.+++|++...+.++.++.-++
T Consensus       440 ----R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  440 ----RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             ----hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence                9999999999999999999999899988     778999999888887777766444

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.46  E-value=0.0029  Score=66.91  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHH
Q 008020          377 FFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIP  456 (581)
Q Consensus       377 ~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  456 (581)
                      ....+-.+.....+++.|+++.|+          .+.++.+..++..++.++..                   +...+.+
T Consensus        70 ~F~ysYal~qIp~GlLaDrlG~K~----------vL~l~~l~Wsl~t~L~~fa~-------------------Sl~~L~i  120 (511)
T TIGR00806        70 VLPYSHLAVLVPVFLLTDYLRYKP----------VLVLQALSFVCVWLLLLLGT-------------------SVWHMQL  120 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchH----------HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHH
Confidence            334444555566666666655553          36677777777766666542                   3456777


Q ss_pred             HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008020          457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIV  510 (581)
Q Consensus       457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i  510 (581)
                      .-+++|++++... ....++.+.+|++.|++++|+.+....+|..+++.+.+.+
T Consensus       121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999 9999999999999999999999999999999999999874

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.39  E-value=0.0033  Score=56.60  Aligned_cols=107  Identities=13%  Similarity=0.160  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHH
Q 008020           68 ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLY  147 (581)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  147 (581)
                      ..-.++.+....+.+++...+.+++ |.|+.+.++.+.+++-......    |                     +.+.++
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~----~---------------------~~~~l~   93 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY----P---------------------NSYTLY   93 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh----h---------------------hHHHHH
Confidence            3445566777777788888889987 9999999998877754443321    2                     267789


Q ss_pred             HHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHH
Q 008020          148 ISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLV  206 (581)
Q Consensus       148 ~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  206 (581)
                      .+-++.|+|.+..++....++.+..++++      |++-.+++....+.+.++|.++.-
T Consensus        94 ~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   94 PASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888877      888888887777777777765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.081  Score=53.83  Aligned_cols=159  Identities=15%  Similarity=0.164  Sum_probs=94.4

Q ss_pred             ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhh-----hcccchHH
Q 008020           24 KTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD-----SFLGRYRT   98 (581)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----~~~Grr~~   98 (581)
                      .++..+.++.+++.+.....-+ +...-+|..++ .-|.|-++.+....++  -=+-.-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            4566678888888888876655 34445555555 5577777766543332  12234567788888     87 99986


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020           99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK  178 (581)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~  178 (581)
                      -++-. -+.+|.++..++...+.     .    .++....+.  ...+....++.-+..+.--.++-...-.+..+++  
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~-----~----~g~ng~~p~--v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDR-----G----LGGNGGLPN--VVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCc-----c----cccCCCCcc--hHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            54322 22344444444432221     1    111111111  1122223345556666667777788888888888  


Q ss_pred             HHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020          179 EKTQMAYFFSRFFFVISTGTLMAVTVL  205 (581)
Q Consensus       179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~  205 (581)
                          .+.+......+.+.|.++|..+.
T Consensus       167 ----lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 ----LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             ----cCchhHHHHHHHhhhHHhhccee
Confidence                88888888888888888876553

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.20  E-value=0.0027  Score=64.28  Aligned_cols=151  Identities=13%  Similarity=0.050  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhccc-chHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYL-GGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLG-RYRTIAIFATVQT  107 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-rr~~l~~~~~~~~  107 (581)
                      +.+..+....+...-.|...-+...++ .+.+|+++.|.|-+.+...+...+.++.-....||..| -+-.+..++.++.
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            455555555554444444444444444 67899999999999998888888888888888898733 3445555555555


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      -..++...+.                        .+..++.+..+-.+..+...++...++....|.++      ||.+.
T Consensus       341 P~~llls~~~------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~  390 (451)
T KOG2615|consen  341 PAFLLLSLAR------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLN  390 (451)
T ss_pred             HHHHHHhccc------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHH
Confidence            5555555442                        25678888899999999999999999999999988      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhc
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                      |+......++-.+||+++|.+..
T Consensus       391 Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  391 GIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHHHhhhhhhheeEE
Confidence            99999999999999999998765

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.19  E-value=0.013  Score=62.35  Aligned_cols=161  Identities=12%  Similarity=0.031  Sum_probs=102.5

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee-e
Q 008020          372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPI-S  450 (581)
Q Consensus       372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  450 (581)
                      ++......++..+..|..+.+-.|...  .++|       ++.|.+++.++.++...++..               +. .
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~--~k~P-------li~s~ii~~~g~llY~~l~~~---------------~~~~  129 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGS--VKKP-------LIVSFLIAIIGNLLYLALAYV---------------PNGV  129 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCC--cccC-------HHHHHHHHHHHHHHHHHHHhc---------------ccch
Confidence            334455677778888877776432211  1232       889999999998888555432               22 3


Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCcc
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENINK  529 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~~  529 (581)
                      .+++.+..++.|+|.+. ....=.|++...-.+.|.++++..+....+|..+||.+...+..+...+  ..|.+ -..|.
T Consensus       130 ~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~~~~n~  206 (488)
T KOG2325|consen  130 KYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPGLIFNM  206 (488)
T ss_pred             HHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCcceEEe
Confidence            45667788888888544 3455567777777777888888888877888888887776654433221  23333 12333


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008020          530 GRLDCFYGLLAALSFINFGLFLLCASWYKRKK  561 (581)
Q Consensus       530 ~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  561 (581)
                      ...  .-|+.+.++++.+++.+++.+|..+..
T Consensus       207 YTa--p~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  207 YTA--PAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             cch--HHHHHHHHHHHHHHHHHhheeecccCc
Confidence            322  235667788888888888888755443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.14  E-value=0.0041  Score=68.17  Aligned_cols=134  Identities=11%  Similarity=0.067  Sum_probs=94.8

Q ss_pred             hhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehh
Q 008020          374 LTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFY  453 (581)
Q Consensus       374 ~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (581)
                      ..++..++.++...+.+.+.|+++||.          .+..++++..++-+..++.                   .+++.
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~----------~~~~~~~~~~i~~~~~a~a-------------------~~~~~  173 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKP----------VLLVSLLLFIIFGILTAFA-------------------PNYWM  173 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHH----------HHHHHHHHHHHHHHHHHHh-------------------CcHHH
Confidence            344455566666666666666655553          2566666666665555543                   35667


Q ss_pred             hHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhh
Q 008020          454 LIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLD  533 (581)
Q Consensus       454 li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~  533 (581)
                      +++.-++.|++.+......+.+..|..+++.|+.+..+ ......++.+++...+++.        .+|          .
T Consensus       174 ~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~--------~~W----------r  234 (521)
T KOG0255|consen  174 FLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT--------RDW----------R  234 (521)
T ss_pred             HHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH--------hhH----------H
Confidence            78888999999999999999999999999999999999 8888888888888877664        244          5


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcc
Q 008020          534 CFYGLLAALSFINFGLFLLCASW  556 (581)
Q Consensus       534 ~~f~~~~~~~~i~~~~~~~~~~~  556 (581)
                      +.+++..+...+.+++ ++..+|
T Consensus       235 ~~~~~~~~~~~~~~~~-~~l~~E  256 (521)
T KOG0255|consen  235 WLFWIISIPSGLFLLL-WFLPPE  256 (521)
T ss_pred             HHHHHHHHHHHHHHHH-HHccCc
Confidence            6677766666655554 444333

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.09  E-value=0.0041  Score=49.43  Aligned_cols=73  Identities=11%  Similarity=0.047  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhh
Q 008020           43 LSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAIST  117 (581)
Q Consensus        43 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~  117 (581)
                      ++-+.+.+.+| .++++.++|.++.+++.+..++++.++.+...++.++. .+++.+..+++...+..+.+++.+
T Consensus         6 igRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455566554 67889999999999999999999999999999999987 888999999999999888888763

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.86  E-value=0.0066  Score=64.85  Aligned_cols=151  Identities=16%  Similarity=0.136  Sum_probs=115.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHH-HHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHH-HHhhhcccchHHHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTM-GIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGG-FLADSFLGRYRTIAIFA  103 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Grr~~l~~~~  103 (581)
                      ++.|..+.++...+.....-. +..-.+..|+...++++..+.+...+.......++.++.. .+.-. +|-|+++..|+
T Consensus       237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl  315 (463)
T KOG2816|consen  237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGL  315 (463)
T ss_pred             CCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHH
Confidence            334444554444444433333 2222456788999999999999999999999999998888 45555 49999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          104 TVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      +...+...+.+++..                        .|+.+....+.++ .+...|...++.+.+.++++      +
T Consensus       316 ~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~e------~  364 (463)
T KOG2816|consen  316 LSEFLQLLLFAFATE------------------------TWMMFAAGVVVAL-AGIVFPAIRAFASILVSPEE------Q  364 (463)
T ss_pred             HHHHHHHHHHHHhcc------------------------chhhhHHHHHHHh-hcchhHHHHhHHHhhccccc------c
Confidence            999999999988832                        5666666666554 46677999999999999999      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                      |+.+++......+..+++|.+-+.+
T Consensus       365 g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  365 GKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cchhhHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999999999998877655

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.85  E-value=0.023  Score=60.08  Aligned_cols=154  Identities=14%  Similarity=0.017  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .++...+...+-.++..+.-..+..|+... |++....|..-+...+....+.....++-+|+ |..|.=.+++....+.
T Consensus       259 ~vflas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  259 PVFLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVC  336 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence            455555555566666666667788999866 99999999999999999999999999999998 9999888888877776


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      ..++..+...+.   +|+           +..+...++.+.++--+|.=++--+..-++.|..|+++      |+...+.
T Consensus       337 L~~~v~~~~~~~---~~~-----------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gv  396 (432)
T PF06963_consen  337 LALCVVSFWAPG---SPF-----------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGV  396 (432)
T ss_pred             HHHHHHHHhcCC---CCc-----------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHH
Confidence            666655533222   000           12346677777777777877788889999999999998      9999999


Q ss_pred             HHHHHHhhHHHHHHHH
Q 008020          190 FFFVISTGTLMAVTVL  205 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~  205 (581)
                      .+...++--++...++
T Consensus       397 q~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  397 QNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988888888876554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0024  Score=67.19  Aligned_cols=136  Identities=19%  Similarity=0.184  Sum_probs=99.4

Q ss_pred             HHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHH
Q 008020          385 TLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSG  464 (581)
Q Consensus       385 ~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~  464 (581)
                      ...+.+++.||+..++         +.+..|.+++.+|.++++...                 ..+...+.+.+++.++|
T Consensus        77 t~i~GG~laDr~LG~~---------~tI~lGail~~iGh~~L~~~~-----------------~~~~~gl~i~L~~I~iG  130 (498)
T COG3104          77 TPIIGGWLADRVLGTR---------RTIVLGAILMAIGHLVLAISS-----------------VSGPGGLYIGLALIIVG  130 (498)
T ss_pred             HHHHHHHHHHHhcchh---------HHHHHHHHHHHHHHHHHhccc-----------------cccccHHHHHHHHHHhc
Confidence            3344455555544432         338889999999998887541                 02344567778888899


Q ss_pred             HHHHhhhHHHhhhccCCcc--hhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHH
Q 008020          465 EGFMYTGQLDFFITQSPKG--MKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAAL  542 (581)
Q Consensus       465 ~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~  542 (581)
                      .++.=|...+++.|++|++  .|..+.+++.+.-++|+.+++.+.+.+...                .+++..|.+.++-
T Consensus       131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~----------------~g~~~gF~~aavG  194 (498)
T COG3104         131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN----------------YGWHVGFGLAAVG  194 (498)
T ss_pred             cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh----------------hCHHHHHHHHHHH
Confidence            9999999999999999953  477788888899999999999999877421                2246667777777


Q ss_pred             HHHHHHHHHhhhcccccccc
Q 008020          543 SFINFGLFLLCASWYKRKKA  562 (581)
Q Consensus       543 ~~i~~~~~~~~~~~~~~~~~  562 (581)
                      +.++++.+++..++.+....
T Consensus       195 m~~gl~~f~~~~r~~~~~~~  214 (498)
T COG3104         195 MIIGLVIFLLGRRHVKGIGG  214 (498)
T ss_pred             HHHHHHHHHHccchhcCCCC
Confidence            88888888887766665443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.72  E-value=0.017  Score=60.02  Aligned_cols=157  Identities=11%  Similarity=-0.058  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .+.++++..-.....+++....+-.- ...-|++...+|.+.....+++.++.+++|.++||.-+-|.++++......++
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            44555555555544555554444322 23457777889999999999999999999999999844456666666666666


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      ...+...+..+                    ...+.++....+.|....+..|.-.-+..|..-+..      =+.-.|.
T Consensus       346 ~~~l~~~t~~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGl  399 (480)
T KOG2563|consen  346 TLMLLTCTLFL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGL  399 (480)
T ss_pred             HHHHHHhhccC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------Cccccee
Confidence            43332222211                    124556666777788778888888888777654443      2333455


Q ss_pred             HHHHHHhhHHHHHHHHHHhhcccc
Q 008020          190 FFFVISTGTLMAVTVLVYIQDEVG  213 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~~~g  213 (581)
                      .+...++-+++=.++-+...+..+
T Consensus       400 l~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  400 LNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             EEeehhHHHHHHHHHHHHHhhccC
Confidence            444444444444445555555544

>PRK03612 spermidine synthase; Provisional

Probab=96.35  E-value=0.14  Score=55.80  Aligned_cols=172  Identities=13%  Similarity=0.055  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH---H
Q 008020           34 SLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG---T  110 (581)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~---~  110 (581)
                      +....+...++...+-....-.+...+|-+..+.+.+++++.++..+|..++|+++++. -|+.. .+-..+..++   .
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~l~~~~~~   96 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLALLGGLSA   96 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHHHHHHHHH
Confidence            34444455555555555555555666788888999999999999999999988887543 23322 2211111111   1


Q ss_pred             HHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH
Q 008020          111 GLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  190 (581)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  190 (581)
                      .+........                   ......++...++.++-.|+..|....+..+... ++      -++..+..
T Consensus        97 ~ll~~~~~~~-------------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~l  150 (521)
T PRK03612         97 LILYAAFAFQ-------------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATV  150 (521)
T ss_pred             HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhh
Confidence            1111110000                   0011223334445667777777777666654322 12      34556777


Q ss_pred             HHHHHhhHHHHHHHHHHhh-cccch-hhHHHHHHHHHHHHHHHHH
Q 008020          191 FFVISTGTLMAVTVLVYIQ-DEVGR-SWGYGICSICMFTAILIFL  233 (581)
Q Consensus       191 ~~~~~~g~~i~~~~~~~l~-~~~g~-~~~f~i~~~~~~~~~~~~~  233 (581)
                      +....+|+++|.++.+++. ...|- +..+.++.+..+++++..+
T Consensus       151 y~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~  195 (521)
T PRK03612        151 LAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLW  195 (521)
T ss_pred             HhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7778889999888887654 35663 4445555544444544433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.25  E-value=0.027  Score=63.00  Aligned_cols=95  Identities=22%  Similarity=0.421  Sum_probs=73.8

Q ss_pred             CCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCc
Q 008020          444 GTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWV  523 (581)
Q Consensus       444 ~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~  523 (581)
                      +.+..++.+|.++++++.+.+|.+...+..++..+++|++|++..++++.....+|+.+...+...-.            
T Consensus       558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~------------  625 (654)
T TIGR00926       558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN------------  625 (654)
T ss_pred             cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------
Confidence            45567888999999999999999999999999999999999999999999999999999877765311            


Q ss_pred             CCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020          524 GENINKGRLDCFYGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       524 ~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  555 (581)
                         ..  .-..-|..++++.++-.+++..+.+
T Consensus       626 ---~~--~~~~~~~~~~~~~~~~~~~f~~~a~  652 (654)
T TIGR00926       626 ---FS--VQAAEFFLFASLMLVVMAIFSILAY  652 (654)
T ss_pred             ---Ch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               00  1123456666666666665555543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.87  E-value=0.05  Score=56.84  Aligned_cols=124  Identities=17%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcc---hhHH
Q 008020          411 LIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKG---MKTM  487 (581)
Q Consensus       411 ~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~rg~  487 (581)
                      .+.+|.++..+|.+++.......    .      .+...+...+.+.+.+.++|.++.=|....+..++++++   .|.+
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~----~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~   72 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPP----S------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDS   72 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSS----S------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcc----h------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhh
Confidence            36778888888887765542210    0      000223456777888899999999999999999999976   4666


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          488 STGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       488 ~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                      +...+....++|..++..+.+++.+                ..++...|.+.++..+++.++++...++++++
T Consensus        73 ~F~~fY~~in~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   73 FFNWFYWGINIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hHHHHHHHHhhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            7777888999999999888776642                12345667887888888888777776666655

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.67  E-value=0.002  Score=70.51  Aligned_cols=179  Identities=15%  Similarity=0.095  Sum_probs=2.9

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHh-hc------
Q 008020          372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEV--KRL--AVAK-AN------  440 (581)
Q Consensus       372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~--~~~--~~~~-~~------  440 (581)
                      +.+.+.+-++.++...++.++.    +|.      ++.+.+.+|.++++++.+++++-+-  ..+  .... .+      
T Consensus        41 G~i~s~~di~~~~~~~~vsy~g----~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~  110 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSYFG----GRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS  110 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence            4444555566666666665552    331      2345588899999888876654211  101  0000 00      


Q ss_pred             ----------C--C------C-CCCc-eeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHH
Q 008020          441 ----------G--T------T-GTTL-PISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGF  500 (581)
Q Consensus       441 ----------~--~------~-~~~~-~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~  500 (581)
                                .  .      + +... ...+..++++.++.|+|..-.++...+|+.|.++++.-+.+.|+......+|.
T Consensus       111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP  190 (539)
T PF03137_consen  111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP  190 (539)
T ss_dssp             -----------------------------------------SSS------------------------------------
T ss_pred             cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence                      0  0      0 0111 12235566778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCC-----CCcCCCCccchhhH-HHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          501 FFSSLLVSIVKAATGSNGKH-----GWVGENINKGRLDC-FYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       501 ~~g~~~~~~i~~~~~~~~~~-----~w~~~~~~~~~~~~-~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                      .+|-.+.+...+........     +--|++-..-+.+| -|++.+++.++..+.+..+-|+.++.
T Consensus       191 a~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  191 ALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence            99988887655432211100     00000000011123 34555666777777777666655544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=95.62  E-value=3.8  Score=43.55  Aligned_cols=170  Identities=11%  Similarity=-0.009  Sum_probs=96.2

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH---LPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIA  100 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~  100 (581)
                      +..++.+..+.+..+|..+.+.....     +.+.+.   .++.....+-+..-+ ++.+..++-+++.++. .|.+++.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            34566666677777777666554432     334433   344556666666666 6667788889999998 9999888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCC---CCCCCCCCCccccccCCch-h--------hHHHHHHHHHHHHHhccCcc-cchhhh
Q 008020          101 IFATVQTFGTGLLAISTKQPQ---LRPPPCQATDITKCQHASG-I--------QMGVLYISLYLIALGTGGLK-SSVSGF  167 (581)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~--------~~~~l~~~~~l~glg~g~~~-~~~~~~  167 (581)
                      .-...+....+++++.-. |.   +.|.|+..-   ..+..-+ .        +.|..-+.-+..-+=..... -.-+.+
T Consensus        97 ~~~~~F~~fF~LFa~Vi~-P~~~~~hp~~~~~~---~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~f  172 (509)
T COG3202          97 IILGFFLGFFALFAFVIY-PYKDILHPDPEFSR---DLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQF  172 (509)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccccccCCCHHHHH---HHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766666666665521 11   000000000   0000000 0        00111111111111111111 144566


Q ss_pred             cccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          168 GTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       168 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                      ..|....++      -.|.++.++...|++..++..+..++.+
T Consensus       173 aNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         173 ANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            778877777      8889999999999999999888888765

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.54  E-value=0.14  Score=49.90  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHH
Q 008020          408 NLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTM  487 (581)
Q Consensus       408 ~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~  487 (581)
                      +...+.+|.+...+++..+....+++            -...+.|.+.+...+.+.+....++....-..+.+|+ .||+
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~  131 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT  131 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence            33446788888888887665553321            0123556666666667777777777777777788985 6999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Q 008020          488 STGLFLTTLSLGFFFSSLLVSIV  510 (581)
Q Consensus       488 ~~gi~~~~~~lg~~~g~~~~~~i  510 (581)
                      +.|+.-....+++.+-+.+...+
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHH
Confidence            99999999998888776665443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.42  E-value=0.064  Score=59.63  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=76.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcC-CCCc--
Q 008020          452 FYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVG-ENIN--  528 (581)
Q Consensus       452 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~-~~~~--  528 (581)
                      ..++.+.++.|+|..-.+|...+|+.|.+.++.-+.+.|+......+|.++|-.+.++...+.....    .. ..++  
T Consensus       238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~----~~~~~it~~  313 (735)
T KOG3626|consen  238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG----LSPIGITPT  313 (735)
T ss_pred             HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc----cCCCCCCCC
Confidence            3566678899999999999999999999999999999999999999999999999888765443220    11 0111  


Q ss_pred             cc---hhhH-HHHHHHHHHHHHHHHHHhhhcccccc
Q 008020          529 KG---RLDC-FYGLLAALSFINFGLFLLCASWYKRK  560 (581)
Q Consensus       529 ~~---~~~~-~f~~~~~~~~i~~~~~~~~~~~~~~~  560 (581)
                      +.   +.+| -|++.+.+.++..+.++++-++.++.
T Consensus       314 DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  314 DPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence            11   2223 35556677777777777776655543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.85  E-value=0.33  Score=43.72  Aligned_cols=61  Identities=21%  Similarity=0.433  Sum_probs=53.0

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIV  510 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i  510 (581)
                      +.+.+++.-++.|++.+..++..-.++.+...++.+++.+|++......+..+|..+.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456777888999999999999999999999999999999999999998888887765443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.69  E-value=0.2  Score=53.49  Aligned_cols=114  Identities=16%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCc--chhHHHH
Q 008020          412 IAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK--GMKTMST  489 (581)
Q Consensus       412 l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~--~~rg~~~  489 (581)
                      +.++.++..++.+.++.....               ..+.......+++..+|..+.+...-+.+.|...+  +.||..+
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~---------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq  126 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS---------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ  126 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc---------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence            566666665555555544211               12333445566778889999998888888888742  2378889


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          490 GLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASW  556 (581)
Q Consensus       490 gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~  556 (581)
                      +..+.++.+|+.++..++|.+.+.                .+....|.+.+.+..+..+..++..+|
T Consensus       127 S~~~~~~~~G~lv~~~l~G~l~~~----------------~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  127 SFVWGVRSVGSLVGSLLSGPLLDS----------------FGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhc----------------CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999888766421                112344666666666666666666555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.19  E-value=10  Score=41.12  Aligned_cols=173  Identities=12%  Similarity=-0.001  Sum_probs=91.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChhhhhhHHHHHHH-HHHHHHHHHHHHhhhcccchHHHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM---HLPSATSANIVTDFMG-TSFLLCLLGGFLADSFLGRYRTIAI  101 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~~  101 (581)
                      ..++.++.+.+..+|..+.+.....     +++.+   ..+......+-....+ .+.+...+-.+++|++ +|.+++.+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~   94 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            4456667777777776665543332     23322   1144445555443333 4455667779999998 99998887


Q ss_pred             HHHHHHHHHHHHHHhhc--CCCCCCC-CCCCCccccccCCch----hhHHHHHHHHHHHHHhccCccc-chhhhcccCCC
Q 008020          102 FATVQTFGTGLLAISTK--QPQLRPP-PCQATDITKCQHASG----IQMGVLYISLYLIALGTGGLKS-SVSGFGTDQFD  173 (581)
Q Consensus       102 ~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~----~~~~~l~~~~~l~glg~g~~~~-~~~~~~~~~~~  173 (581)
                      ....+..-..++++.-.  ...+.|+ .++..+.....+-.+    -..|...+.-++.-+=.....+ .-+++..|.+.
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            76655554444443311  0111111 111000000000000    0011111111111111112222 45788899998


Q ss_pred             CCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhc
Q 008020          174 EKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQD  210 (581)
Q Consensus       174 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~  210 (581)
                      .++      -.|.++++..+.|+|.+++..+..++.+
T Consensus       175 ~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 VEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888      8889999999999999998888877766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.58  E-value=17  Score=39.01  Aligned_cols=65  Identities=20%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHH-HHHhhhcCC
Q 008020          453 YLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVS-IVKAATGSN  517 (581)
Q Consensus       453 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~-~i~~~~~~~  517 (581)
                      .++..+++..+.....+.+..++.+.++.|.+-|++|.+.|+..++|+.--..++- ++...|.+.
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~~  472 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFTVAT  472 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhccccc
Confidence            44556788888888889999999999999999999999999999998866554444 344444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.85  E-value=0.61  Score=48.74  Aligned_cols=60  Identities=12%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       143 ~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                      .+..++..+..|+..|..+.+....+.|..++++      |..+++...++-++|..++.+++-.+
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6777777888899999999999999999888887      99999998888888888887666544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.01  E-value=5.9  Score=42.29  Aligned_cols=116  Identities=22%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHh---hhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHH
Q 008020           75 MGTSFLLCLLGGFLA---DSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLY  151 (581)
Q Consensus        75 ~~~~~~~~~~~G~la---D~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  151 (581)
                      .++..++.++.+.+.   +++ ||++.+.++..+..++.++..++  .|..-  |..-||.....-.  .......+.-+
T Consensus       289 g~g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~da--p~~~t~~~~~~~~--~~~~~~~ii~~  361 (461)
T KOG3098|consen  289 GLGEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPNDA--PLRPTDSPPLLFT--PSYYLALIIGF  361 (461)
T ss_pred             hHHHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--ccccC--CCCCCcccccccc--cchhHHHHHHH
Confidence            344444555556665   445 89999999999888888877665  23211  1111121111111  23445566667


Q ss_pred             HHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHH
Q 008020          152 LIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTV  204 (581)
Q Consensus       152 l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  204 (581)
                      +.|++-+......+.++++.+| ++      |..+++++-.-..++..++...
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhh
Confidence            8899999999999999999994 44      6777777666555666554433

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.26  E-value=26  Score=36.67  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=42.7

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHH
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLL  506 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~  506 (581)
                      -++.+....+.|+..+-.....+.+..+.+|++.+..+-.+..+....|-..|..+
T Consensus       343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            35667777888999888888888899999998888777766666666666665544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=89.78  E-value=0.69  Score=48.52  Aligned_cols=164  Identities=13%  Similarity=0.111  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhccccceeeeecccccccccccccc---chhhhhhhHHHHHHHHHhhhhhhhhccccccCCC
Q 008020          328 MVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIP---AASLTVFFVAAILITLGAYDRLIIPLLKKRKGKP  404 (581)
Q Consensus       328 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~  404 (581)
                      +++....+.+..-+.|....++.+.+.++.          +++   .+....+..+..++.+|+.+...|+...|+++|+
T Consensus        33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l----------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR  102 (498)
T KOG0637|consen   33 KLISVASIAAGVQFGWALELSYLTPYLQSL----------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHHHHHc----------CCCcccccccccccccccceeccccccccccccccccccc
Confidence            344444444555555666665555443321          222   2334455667778889999999888877776542


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcch
Q 008020          405 GFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGM  484 (581)
Q Consensus       405 ~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  484 (581)
                           .-+..+..+++++++++++..+...-..+...  ...........++.+.+.-++......+.=++..+...++.
T Consensus       103 -----PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~  175 (498)
T KOG0637|consen  103 -----PFILAGSLLIAVSLFLIGYAADIGLLLGDNER--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA  175 (498)
T ss_pred             -----chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh
Confidence                 12566778888888888777554322211111  00112233444555666667776667677778888877777


Q ss_pred             hHH-HHHHHHHHHhHHHHHHHHHHH
Q 008020          485 KTM-STGLFLTTLSLGFFFSSLLVS  508 (581)
Q Consensus       485 rg~-~~gi~~~~~~lg~~~g~~~~~  508 (581)
                      +-+ +.+.+.+...+|+.+|-.+.+
T Consensus       176 ~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  176 KKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhhccchhHHHHHHhcceeeeeccc
Confidence            777 999999999999999876654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.75  E-value=17  Score=37.31  Aligned_cols=140  Identities=12%  Similarity=-0.017  Sum_probs=74.3

Q ss_pred             hhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeh
Q 008020          373 SLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVF  452 (581)
Q Consensus       373 ~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (581)
                      .+........++++++.+.+.|+++||+.          -++..++..++.    +...                ..+..
T Consensus        73 ~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~----------cl~~cily~~sc----l~k~----------------~~~~~  122 (354)
T PF05631_consen   73 ILFVAGFASSAIFGTFVGSLADRYGRKKA----------CLLFCILYSLSC----LTKH----------------SSNYP  122 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCchHH----------HHHHHHHHHHHH----HHHh----------------ccccH
Confidence            34455567778889999999988887742          112122222222    1111                23456


Q ss_pred             hhHHHHHHHHHHHHHHhhhHHHhhh-----ccCCcchhHHHHHHHH-HHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCC
Q 008020          453 YLIPQFFLVGSGEGFMYTGQLDFFI-----TQSPKGMKTMSTGLFL-TTLSLGFFFSSLLVSIVKAATGSNGKHGWVGEN  526 (581)
Q Consensus       453 ~li~~~~l~g~~~~~~~~~~~~~~~-----~~~P~~~rg~~~gi~~-~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~  526 (581)
                      .+++.-++.|++..+.+...-++..     .-+|++..+...+... ..+.+-...+..+.-.+.+..+           
T Consensus       123 ~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-----------  191 (354)
T PF05631_consen  123 VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-----------  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-----------
Confidence            6777888899988888876555432     2355555555544444 3344444444444433322111           


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          527 INKGRLDCFYGLLAALSFINFGLFLLCASW  556 (581)
Q Consensus       527 ~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~  556 (581)
                        . +....|....++.+++.+++....+|
T Consensus       192 --~-g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  192 --F-GPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             --C-CCcchHHHHHHHHHHHHHHHHhcccc
Confidence              1 11233556566666666655555444

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.18  E-value=10  Score=38.67  Aligned_cols=96  Identities=13%  Similarity=0.090  Sum_probs=58.9

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCcc
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINK  529 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~  529 (581)
                      +.|+.-..+++....+.+..+....-+++....+.-|...|++.+..-+-..+-+.++   .+..+.    + ++-...-
T Consensus       325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~----~-L~ir~Q~  396 (433)
T KOG3810|consen  325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGL----G-LDIRTQF  396 (433)
T ss_pred             ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---Eccccc----C-CCcceeE
Confidence            4667778888888888888888888888888888899999998876655444433332   110000    0 0000000


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhh
Q 008020          530 GRLDCFYGLLAALSFINFGLFLLC  553 (581)
Q Consensus       530 ~~~~~~f~~~~~~~~i~~~~~~~~  553 (581)
                      .-+..+|.+.+++.+++....+..
T Consensus       397 ~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  397 VVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             EEEeehHHHHHHHHHHHHHHHHHH
Confidence            112345777777777776654433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=89.10  E-value=2.8  Score=44.69  Aligned_cols=58  Identities=14%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHH
Q 008020          142 QMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVL  205 (581)
Q Consensus       142 ~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~  205 (581)
                      +.+..++..++.|+..|-..+....+..+..++++      |..+..+...+..+|-.+|..++
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677888999999999999999988888766      77777777777777777776544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.06  E-value=36  Score=36.65  Aligned_cols=59  Identities=8%  Similarity=0.012  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHHHHHHhh-hHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008020          454 LIPQFFLVGSGEGFMYT-GQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKA  512 (581)
Q Consensus       454 li~~~~l~g~~~~~~~~-~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~  512 (581)
                      ....|+...+....+.. ..|.++.|....++..+..++.....++|..+|+.+...+..
T Consensus       131 ~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       131 FALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555554444454 889999999999999999999999999999999988876653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=88.95  E-value=36  Score=36.39  Aligned_cols=58  Identities=17%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV  507 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~  507 (581)
                      +-++.++..++.|+..|......+.+..+.++++.|..+-.+..+...+|-..|..++
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355566678899999999999999999999999999988888888888888887664

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.93  E-value=3.5  Score=40.28  Aligned_cols=139  Identities=17%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcccch--HHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCCCccccccCCchhhH
Q 008020           67 SANIVTDFMGTSFLLCLLGGFLADSFLGRY--RTIAIFATVQTFGTGLLAISTK-QPQLRPPPCQATDITKCQHASGIQM  143 (581)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  143 (581)
                      -|.+.+.+++++.++.-+...+..|- ..|  ..+.+..++..+...+..+..+ .|.                  ..++
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~------------------kes~  344 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSPS------------------KESP  344 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCCC------------------cCCc
Confidence            47888888888888887777776654 222  3444554444433333322211 111                  1223


Q ss_pred             HHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHH
Q 008020          144 GVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSI  223 (581)
Q Consensus       144 ~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~  223 (581)
                      ..-+++-.++-.+.|.++|...-+=++..|++.      |++.++++..-.|+-..++-..--.-..-.+-|..|.++.+
T Consensus       345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~  418 (454)
T KOG4332|consen  345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA  418 (454)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence            444666777778889999999999999999998      99999998887776554442110000011245667777776


Q ss_pred             HHHHHHH
Q 008020          224 CMFTAIL  230 (581)
Q Consensus       224 ~~~~~~~  230 (581)
                      ...++.+
T Consensus       419 ~~~~a~i  425 (454)
T KOG4332|consen  419 FLFVASI  425 (454)
T ss_pred             HHHHHHH
Confidence            6555533

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.33  E-value=19  Score=36.13  Aligned_cols=58  Identities=16%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 008020          450 SVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLV  507 (581)
Q Consensus       450 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~  507 (581)
                      +.+.+.+..++=|+--+..+...+--+.+..+++.|-.+|+......++|..++..++
T Consensus       341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            3333333444445555555666666677778899999999999999998888877665

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=86.92  E-value=7.3  Score=39.31  Aligned_cols=118  Identities=9%  Similarity=-0.036  Sum_probs=69.3

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +...|..+++....+.. ++.|.-..++......++|  ....+    ..++......++.+.+..++ |-|+++.++..
T Consensus        25 ~~~~knv~i~s~~fl~~-f~a~~gl~nlq~~vn~~lg--~~sl~----~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIAFLLT-FTAYLGLQNLQTSVNYDLG--TVSLG----ALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHhcCcc--cchhh----hhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            44456666555554444 4444445566655544333  22222    23444455555556666665 99999988776


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCC
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEK  175 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~  175 (581)
                      .++.-...     +..                    ..+..+.-+-...|.|.+..+..-.++++++-...
T Consensus        97 ~Y~lyiA~-----Nl~--------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   97 PYALYIAA-----NLE--------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             HHHHHHHh-----hcc--------------------hhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            65543221     111                    12445666677889999999999888888766543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=84.91  E-value=20  Score=34.56  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHHHHHHHhhhHHHhhhccCCc-chhHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 008020          452 FYLIPQFFLVGSGEGFMYTGQLDFFITQSPK-GMKTMSTGLFLT-TLSLGFFFSSLLVSIVK  511 (581)
Q Consensus       452 ~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~-~~~lg~~~g~~~~~~i~  511 (581)
                      +.++......|++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+.
T Consensus        95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555558888888899999999999998 778888888887 57778888886666554

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=84.58  E-value=6.4  Score=40.60  Aligned_cols=98  Identities=11%  Similarity=0.045  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCC-CCCCcCCCCccchhhHH
Q 008020          457 QFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNG-KHGWVGENINKGRLDCF  535 (581)
Q Consensus       457 ~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~-~~~w~~~~~~~~~~~~~  535 (581)
                      .+++.-+.-+....+.-.+......++.-|-++......+..|.+++..+.-.+....=.++ ...| |.+-..-.+..+
T Consensus       139 ~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~-P~~~g~ItL~gy  217 (510)
T KOG3574|consen  139 LFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI-PLDQGFITLAGY  217 (510)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcC-cCccceEEhhHH
Confidence            44555566666667766677777777777777777777777777776654432211000000 0011 111111233455


Q ss_pred             HHHHHHHHHHHHHHHHhhhc
Q 008020          536 YGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       536 f~~~~~~~~i~~~~~~~~~~  555 (581)
                      .++.+.+.+++.....++.+
T Consensus       218 ~~fwg~~~~vat~Lv~~~kk  237 (510)
T KOG3574|consen  218 LWFWGALFIVATTLVALLKK  237 (510)
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            66777777777666666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	581
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		3e-17
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		3e-09

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 195/484 (40%), Gaps = 65/484 (13%)
Query: 19  PADRSKTGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTM------HLPSATSANIVT 72
           P D  K    +P  ++   E CER S  G+   L  +L   +       L  A + ++  
Sbjct: 4   PVDAPKWPRQIPYIIA--SEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFH 61
Query: 73  DFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDI 132
            F+   +   LLGG++AD F G+Y TI   + +   G   LAI     Q           
Sbjct: 62  SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ----------- 110
Query: 133 TKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 192
                         Y  L+LIALG+GG+K  VS F  DQFD+ + K   Q A  F  F+F
Sbjct: 111 ------------GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-KSLAQKA--FDMFYF 155
Query: 193 VISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRY-----KKCSG- 246
            I+ G+  A   +  +    G +  +GI  + MF A + F  G +RY +     K   G 
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215
Query: 247 SPIVH---ICQXXXXXXXXXXXELPSSTASLYE--DYPEESRIQHTYQFRCLDKASVVTN 301
            P++    + +            L    ++ Y   + P    +        L    V   
Sbjct: 216 LPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAG 275
Query: 302 TDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQ 361
                + A  S+P        V+ V+ V+R+L ++A    FWS + Q  +  + QA  M 
Sbjct: 276 ASLQLERARKSHP-----DAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMV 330
Query: 362 RSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSAL 421
           +    +  PA    +     +++ L  ++  ++    +R G      ++L A+    + +
Sbjct: 331 KP--QWFEPAMMQAL--NPLLVMLLIPFNNFVLYPAIERMG------VKLTALRKMGAGI 380
Query: 422 GMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSP 481
            +   S + V  + +    G+      +S+F+ I  + L+  GE  +    L+F  +Q+P
Sbjct: 381 AITGLSWIVVGTIQLMMDGGSA-----LSIFWQILPYALLTFGEVLVSATGLEFAYSQAP 435
Query: 482 KGMK 485
           K MK
Sbjct: 436 KAMK 439

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 35/225 (15%)
Query: 21  DRSKTGGWVPAALS--LGIEICERLSTMGIAVNLVTYLG-----GTMHLPSATSANIVTD 73
           D+ KT    P  LS     E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  
Sbjct: 3   DKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAI 62
Query: 74  FMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDIT 133
           +    +L   +GGF+AD  +G    +     +   G  +LA+          P  A+   
Sbjct: 63  YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL----------PFGAS--- 109
Query: 134 KCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFV 193
                       L+ S+ LI +GTG LK +VS      +DE D +        FS F F 
Sbjct: 110 -----------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFG 154
Query: 194 ISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRR 238
           I+ G  +A  ++   Q+  G    + + +I MF  +L++  G ++
Sbjct: 155 INLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
2xut_A	524	Proton/peptide symporter family protein; transport	1e-146
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  430 bits (1107), Expect = e-146
 Identities = 116/556 (20%), Positives = 211/556 (37%), Gaps = 63/556 (11%)

Query: 24  KTGGWVPAALS--LGIEICERLSTMGIAVNLVTYL------GGTMHLPSATSANIVTDFM 75
               W P  +   +  E CER S  G+   L  +L           L  A + ++   F+
Sbjct: 6   DAPKW-PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFV 64

Query: 76  GTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKC 135
              +   LLGG++AD F G+Y TI   + +   G   LAI                    
Sbjct: 65  IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSV--------------- 109

Query: 136 QHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVIS 195
                      Y  L+LIALG+GG+K  VS F  DQFD+ ++    +    F  F+F I+
Sbjct: 110 --------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFTIN 158

Query: 196 TGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQV 255
            G+  A   +  +    G +  +GI  + MF A + F  G +RY +             V
Sbjct: 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV 218

Query: 256 VVAARKKRKVELPSSTASLYEDYPEES------RIQHTYQFRCLDKASVVTNTDYSEDGA 309
           + +A    KVE   +   +       S       I        L  A V+         +
Sbjct: 219 IRSALLT-KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGAS 277

Query: 310 F-VSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFK 368
             +       P   V+ V+ V+R+L ++A    FWS + Q  +  + QA  M   +    
Sbjct: 278 LQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKPQW 334

Query: 369 IPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV 428
              A +       +++ +   + ++ P +++   K   + L+ +  G+ ++ L       
Sbjct: 335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVVGT 392

Query: 429 VEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMS 488
           +++                 +S+F+ I  + L+  GE  +    L+F  +Q+PK MK   
Sbjct: 393 IQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTI 442

Query: 489 TGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFG 548
              +  ++++G  +  L    VK+ T +      V   ++      F+   A  + +   
Sbjct: 443 MSFWTLSVTVGNLWVLLANVSVKSPTVT---EQIVQTGMSVTAFQMFF--FAGFAILAAI 497

Query: 549 LFLLCASWYKRKKAKQ 564
           +F L A  Y+ +   +
Sbjct: 498 VFALYARSYQMQDHYR 513

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  102 bits (257), Expect = 2e-23
 Identities = 94/542 (17%), Positives = 172/542 (31%), Gaps = 88/542 (16%)

Query: 30  PAALSL--GIEICERLSTMGIAVNLVTYL-----GGTMHLPSATSANIVTDFMGTSFLLC 82
           P  LS     E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  +    +L  
Sbjct: 12  PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG 71

Query: 83  LLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQ 142
            +GGF+AD  +G    +     +   G  +LA+                           
Sbjct: 72  TIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS---------------------- 109

Query: 143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAV 202
              L+ S+ LI +GTG LK +VS      +DE D +        FS F F I+ G  +A 
Sbjct: 110 --ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAP 163

Query: 203 TVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKK 262
            ++   Q+  G  +        +   I + +      +                      
Sbjct: 164 LIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221

Query: 263 RKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTR 322
            KV L  +             I            + +           V     +    +
Sbjct: 222 VKVSLAVAGFIAI--------IVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK 273

Query: 323 V--EEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAA---SLTVF 377
           V   E   V+  +P++   +LFW+   Q        A      + +   P +   SL   
Sbjct: 274 VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA---AERVDSSWFPVSWFQSLNPL 330

Query: 378 FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVA 437
           F+    +            L     K   S+    A+GL  + L            L +A
Sbjct: 331 FI----MLYTP----FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSF----------LLMA 372

Query: 438 KANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLS 497
                 GT+  +S  +L+  + LV  GE  +    L      +PK   +    ++  + S
Sbjct: 373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432

Query: 498 LGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWY 557
           +G   ++ LV++  A +                    ++      S +   + +  +   
Sbjct: 433 VGSALNAQLVTLYNAKSEVA-----------------YFSYFGLGSVVLGIVLVFLSKRI 475

Query: 558 KR 559
           + 
Sbjct: 476 QG 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 77/518 (14%), Positives = 148/518 (28%), Gaps = 156/518 (30%)

Query: 68  ANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA------------IFATVQTFGTGLLAI 115
             +V  F+    +L +   FL        R  +            ++   Q F       
Sbjct: 76  EEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------- 126

Query: 116 STKQPQLRPPPCQATDITKC----QHASGIQMGVLYISLYLIALGTGGL-KSSVSGFGTD 170
             K    R  P     + +     + A  +   ++         G  G  K+ V+     
Sbjct: 127 -AKYNVSRLQP--YLKLRQALLELRPAKNV---LID--------GVLGSGKTWVAL---- 168

Query: 171 QFDE--KDEKEKTQMAY--FFSRFFFVISTGTLMA-VTVLVYIQDEVGRSWGYGICSICM 225
              +     K + +M +  F+       S  T++  +  L+Y  D    S      +I +
Sbjct: 169 ---DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 226 FTAILIFLSGTRRY----RYKKC-------SGSPIVHI----CQVVVAARKKRKVELPSS 270
               +   +  RR      Y+ C         +   +     C++++  R K        
Sbjct: 226 RIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK------QV 277

Query: 271 TASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRV-EEVK-- 327
           T  L            T     LD  S+    D  +    +   +  C    +  EV   
Sbjct: 278 TDFLSAA---------TTTHISLDHHSMTLTPDEVK-SLLLK--YLDCRPQDLPREVLTT 325

Query: 328 ------MVIRLLPIWATTILFWSTY-----AQMITFSVEQ--ATTMQR-----SIGNF-- 367
                 ++   +     T   W          +I  S+        ++     S+  F  
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPP 383

Query: 368 --KIPAASLTVF-------FVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL 418
              IP   L++         V  ++  L  Y      L++K+  K    ++  I + L +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQ-PKESTISIPSIYLELKV 437

Query: 419 SALGMAS--ASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVG----------SGEG 466
                 +   S+V+     + K   +     P    Y    +  +G              
Sbjct: 438 KLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYF---YSHIGHHLKNIEHPERMTL 492

Query: 467 F--MYTGQLDF-FITQSPK----GMKTMSTGLFLTTLS 497
           F  ++   LDF F+ Q  K         ++G  L TL 
Sbjct: 493 FRMVF---LDFRFLEQ--KIRHDSTAWNASGSILNTLQ 525

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.9
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.87
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.25
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.07
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.84
2xut_A	524	Proton/peptide symporter family protein; transport	98.23

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=2e-30  Score=279.33  Aligned_cols=445  Identities=20%  Similarity=0.260  Sum_probs=290.8

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChhhhhhHHHHHHHHHHHHHHHHHHHhhh-cccchHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADS-FLGRYRT   98 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grr~~   98 (581)
                      ++++|.++.+.+..++..+++|++..+++.|+++.     +|++..+.+++.+.+.++..++++++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45677889999999999999999999999999988     99999999999999999999999999999999 8 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChH
Q 008020           99 IAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEK  178 (581)
Q Consensus        99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~  178 (581)
                      +.++.++..++.++++++.+                        .+.++++|++.|+|.+...+...++++|.+|+++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  143 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPFG------------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCCS------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred             HHHHHHHHHHHHHHHHHhhh------------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence            99999999999988877622                        677899999999999999999999999999987743


Q ss_pred             HHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccC---CCC-ChhHHHHH
Q 008020          179 EKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKK---CSG-SPIVHICQ  254 (581)
Q Consensus       179 ~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~  254 (581)
                          |+.++++++...++|..++|.+++++.+..||+++|++.++..+++++...+..++...++   ++. ....+..+
T Consensus       144 ----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (491)
T 4aps_A          144 ----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP  219 (491)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH
T ss_pred             ----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHH
Confidence                7778888999999999999999999999899999999887776666655554433222111   111 11111111


Q ss_pred             HHHH--------------HHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCc
Q 008020          255 VVVA--------------ARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPV  320 (581)
Q Consensus       255 ~l~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (581)
                      ....              .....+... ++......      .............                  .|+....
T Consensus       220 ~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~------------------~~~~~~~  274 (491)
T 4aps_A          220 LLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYINLLT------IVAIAIPVFYFAW------------------MISSVKV  274 (491)
T ss_dssp             HHHHCCCCCHHHHHHHHHHHHHSSCCT-THHHHHHH------HHHHHHHHHHHHH------------------HC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccc-ccchhhhh------HHHHHHHHHHHHH------------------Hhhcccc
Confidence            0000              000000000 00000000      0000000000000                  0000000


Q ss_pred             chhHhHHHHHHHHHHHHHHHHHHhhhccccceeeeecc-ccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhcccc
Q 008020          321 TRVEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQAT-TMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKK  399 (581)
Q Consensus       321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r  399 (581)
                       ...++++......++.....++..+.+....+..+.. ..+.+    ....+.......+..++..++.+++.+|+.||
T Consensus       275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r  349 (491)
T 4aps_A          275 -TSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN  349 (491)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence             0112222223333444444555555544432221111 11111    13455666777788888888888888777665


Q ss_pred             ccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhcc
Q 008020          400 RKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQ  479 (581)
Q Consensus       400 ~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~  479 (581)
                      .     ......+..+..+.+++++.+.......       +   .+...+.+++++.+++.+++.+...|..+.++.|.
T Consensus       350 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          350 Q-----PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G---TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C---CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             C-----CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C---CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence            2     3345556778888888877666543210       0   01123556677788889999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          480 SPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR  559 (581)
Q Consensus       480 ~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~  559 (581)
                      +|++.||+++|+.+..+.+|..+++.+.+.+.+                 .+....|++.++++++..++.+++.++.++
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988765421                 122456777777887777777777665554


Q ss_pred             c
Q 008020          560 K  560 (581)
Q Consensus       560 ~  560 (581)
                      +
T Consensus       478 ~  478 (491)
T 4aps_A          478 L  478 (491)
T ss_dssp             -
T ss_pred             H
Confidence            3

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=3.2e-30  Score=280.25  Aligned_cols=480  Identities=22%  Similarity=0.334  Sum_probs=284.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Q 008020           26 GGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTI   99 (581)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l   99 (581)
                      +++|.++.+.+..++..+++|++.++++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            445678889999999999999999999999999999      99999999999999999999999999999965999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHH
Q 008020          100 AIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKE  179 (581)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~  179 (581)
                      .++.++..++.++++++.  .                     +.+.++++|++.|++.+...+...+++.|.+|+++   
T Consensus        89 ~~~~~~~~~~~~~~~~~~--~---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---  142 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFE--H---------------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTS--S---------------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---
T ss_pred             HHHHHHHHHHHHHHHHhc--c---------------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---
Confidence            999999999998888762  0                     27889999999999999999999999999999988   


Q ss_pred             HhHHhhH---HHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHH
Q 008020          180 KTQMAYF---FSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVV  256 (581)
Q Consensus       180 ~~~r~~~---~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (581)
                         |+++   +++++...++|..++|.+++++.+..||++.|++.+++.+++.+......++.+++++++++.....+.+
T Consensus       143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (524)
T 2xut_A          143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI  219 (524)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence               7544   4558889999999999999999988899999998887766666555544443322222222111111111


Q ss_pred             HHHHhhcccccCCCccccccCCccc---cccccCcccchhccccc----cccCCCCCCCCccCCCC-------cccCcch
Q 008020          257 VAARKKRKVELPSSTASLYEDYPEE---SRIQHTYQFRCLDKASV----VTNTDYSEDGAFVSNPW-------TLCPVTR  322 (581)
Q Consensus       257 ~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~  322 (581)
                      ....++++.+.+ ......+.....   ......+.........+    ..++       ..+.+|       +..+...
T Consensus       220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  291 (524)
T 2xut_A          220 RSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-------VGAGASLQLERARKSHPDAA  291 (524)
T ss_dssp             -------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-------HHTGGGTHHHHSCCSCCSSS
T ss_pred             HHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-------cccchhhHHhhhhccccHhH
Confidence            111111110000 000000000000   00000000000000000    0000       000011       0001111


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccC
Q 008020          323 VEEVKMVIRLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKG  402 (581)
Q Consensus       323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~  402 (581)
                      .+++++.+....++.....++..+.+..+.+..+....+...  + .+.+.+...+.+..++..++.+++..+..+|+.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (524)
T 2xut_A          292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV  368 (524)
T ss_dssp             STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence            223344444444444445555555555443333222222110  0 2345556666677778888888876555455432


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCc
Q 008020          403 KPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPK  482 (581)
Q Consensus       403 ~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~  482 (581)
                        +.+..+.+.+++++.+++++.++......          +.+...+.+++++.+++.+++++...+..++++.|.+|+
T Consensus       369 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~  436 (524)
T 2xut_A          369 --KLTALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK  436 (524)
T ss_dssp             ----CCHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT
T ss_pred             --CCChHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence              24455566778877777776655431100          000123556677788899999999999999999999999


Q ss_pred             chhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCC-CCccchhhHHHHHHHHHHHHHHHHHHhhhccccccc
Q 008020          483 GMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGE-NINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKK  561 (581)
Q Consensus       483 ~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~  561 (581)
                      +.||+++|++++...+|+.+++.+.+.+.+.++    .+|.+. +.+.  ....|++.+++++++.++++++.+++++++
T Consensus       437 ~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            999999999999999999999999987642110    123211 0110  122367778888888887777777666554


Q ss_pred             cC
Q 008020          562 AK  563 (581)
Q Consensus       562 ~~  563 (581)
                      .+
T Consensus       511 ~~  512 (524)
T 2xut_A          511 HY  512 (524)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=1.7e-27  Score=253.07  Aligned_cols=399  Identities=8%  Similarity=-0.079  Sum_probs=256.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      ++.++.+.+..++..+..+.+.+.++.+.+ ++ .+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            456677777777777777777777766554 56 9999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHH----hhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHH
Q 008020          108 FGTGLLAI----STKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  183 (581)
Q Consensus       108 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r  183 (581)
                      ++.+++++    +.+                        .+.++++|++.|++.+...+...+++.|.+|+++      |
T Consensus       104 ~~~~~~~~~~~~~~~------------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r  153 (451)
T 1pw4_A          104 AVMLFMGFVPWATSS------------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R  153 (451)
T ss_dssp             HHHHHHHHCHHHHSS------------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred             HHHHHHHhhhhcccc------------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence            99999888    632                        6678999999999999999999999999999988      9


Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhh
Q 008020          184 AYFFSRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKK  262 (581)
Q Consensus       184 ~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  262 (581)
                      ++++++.+...++|..++|.+++++.+..| |++.|++.+++.++..++..+..++.+......+..             
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  220 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-------------  220 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh-------------
Confidence            999999999999999999999999888888 999999887766655444433333221111000000             


Q ss_pred             cccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHH-HHHHHH
Q 008020          263 RKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPI-WATTIL  341 (581)
Q Consensus       263 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~  341 (581)
                            +.     +.+.+ +.  ..       .    ++.        ....++........+.+.++..... ++....
T Consensus       221 ------~~-----~~~~~-~~--~~-------~----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (451)
T 1pw4_A          221 ------EY-----KNDYP-DD--YN-------E----KAE--------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  267 (451)
T ss_dssp             ------TT-----CCC-----------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ------hh-----ccccc-cc--ch-------h----hhh--------cccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence                  00     00000 00  00       0    000        0000000000000111222222222 122222


Q ss_pred             HHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhc--cccccCCCCCChhHHHHHHHHHH
Q 008020          342 FWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPL--LKKRKGKPGFSNLQLIAIGLFLS  419 (581)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~~r~~~~~~~~~~~~l~~g~~l~  419 (581)
                      +.......+. +..+..+.+      ....+.+.....++.++..++.+++.+|+  .+|          +.+..+..+.
T Consensus       268 ~~~~~~~~~~-~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~----------~~~~~~~~~~  330 (451)
T 1pw4_A          268 RYGILDWSPT-YLKEVKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR----------GATGVFFMTL  330 (451)
T ss_dssp             HHHHHHHHHH-HBTTBSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----------hhHHHHHHHH
Confidence            2222221111 111100111      11123444555666667777777776554  332          2234444443


Q ss_pred             H-HHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhH
Q 008020          420 A-LGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSL  498 (581)
Q Consensus       420 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l  498 (581)
                      . ++++.+.+..                 ..+.+.+....++.|++.+...+..+.++.|.+|++.||+++|+.+....+
T Consensus       331 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  393 (451)
T 1pw4_A          331 VTIATIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  393 (451)
T ss_dssp             HHHHHHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence            3 4443333210                 113344556667788888888888899999999999999999999999999


Q ss_pred             -HHHHHHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 008020          499 -GFFFSSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCAS  555 (581)
Q Consensus       499 -g~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~  555 (581)
                       |..+++.+.+.+.+..                ++...|++.+++.+++.++.++..+
T Consensus       394 ~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          394 GGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence             9999999999875321                2355677777777777776665544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=9.5e-28  Score=258.33  Aligned_cols=413  Identities=12%  Similarity=0.029  Sum_probs=232.3

Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhh
Q 008020           63 PSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQ  142 (581)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (581)
                      +..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++++++.........      .......-..+
T Consensus        53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~------~~~~~~~~a~~  125 (491)
T 4gc0_A           53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP------DNTVPVYLAGY  125 (491)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS------SSSCCGGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc------hhHHHHHHhhh
Confidence            345678888999999999999999999999 99999999999999999998864210000000      00000001235


Q ss_pred             HHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHhhcc--------cch
Q 008020          143 MGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYIQDE--------VGR  214 (581)
Q Consensus       143 ~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l~~~--------~g~  214 (581)
                      .+.++++|+++|+|.|+..+..+.+++|..|++.      |++..++.+.+..+|..+++.++..+...        .+|
T Consensus       126 ~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence            8889999999999999999999999999999999      99999999999999999998887665432        346


Q ss_pred             hhHHHHHHHHHHHHHHHHHHccccccc--cCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccch
Q 008020          215 SWGYGICSICMFTAILIFLSGTRRYRY--KKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRC  292 (581)
Q Consensus       215 ~~~f~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  292 (581)
                      +..+.+..+..++.++..+...+..+.  .+.+.++..+.   +.....+.... .             +.   .+....
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~---l~~~~~~~~~~-~-------------~~---~~~~~~  259 (491)
T 4gc0_A          200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGI---LRKIMGNTLAT-Q-------------AV---QEIKHS  259 (491)
T ss_dssp             HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHH---HHHHHHHHHHH-H-------------HH---HHHHHH
T ss_pred             HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHh---HHHhcCCchhH-H-------------HH---HHHHHH
Confidence            666665554444433333222211111  11111111111   11100000000 0             00   000000


Q ss_pred             hccccccccCCCCCCCCccCCCCcccCcchhHhHHHHH-HHHHHHHHHHHHHhhhccccceeeeeccccccccccccccc
Q 008020          293 LDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVI-RLLPIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPA  371 (581)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (581)
                      .+..              ....    ........++.. ......+...........+.+.....   ....    ....
T Consensus       260 ~~~~--------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~  314 (491)
T 4gc0_A          260 LDHG--------------RKTG----GRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT---LGAS----TDIA  314 (491)
T ss_dssp             HHHH--------------HHHT----THHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---SSCC----HHHH
T ss_pred             HHhh--------------hhhh----hHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh---cCCC----ccch
Confidence            0000              0000    000000011111 11111111111001111111100000   0000    1111


Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeee
Q 008020          372 ASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISV  451 (581)
Q Consensus       372 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (581)
                      ........+..++...+...+.+|++||.          .+..+...++++++.++.....               ....
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~----------~~~~~~~~~~~~~~~l~~~~~~---------------~~~~  369 (491)
T 4gc0_A          315 LLQTIIVGVINLTFTVLAIMTVDKFGRKP----------LQIIGALGMAIGMFSLGTAFYT---------------QAPG  369 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSHH----------HHHHHHHHHHHHHHHHHHHHHT---------------TCCH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCcc----------hhccchHHHHHHHHHHHHHHhc---------------ccch
Confidence            22233344445555556666666666653          2566666776666655544221               1111


Q ss_pred             hhhHHHHHHHHHH-HHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCCccc
Q 008020          452 FYLIPQFFLVGSG-EGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENINKG  530 (581)
Q Consensus       452 ~~li~~~~l~g~~-~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~~~~  530 (581)
                      +..+....+...+ .....|..+.+..|.+|++.|++++|+.+..+.+++.+++.+.+.+....       |..   ...
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~---~~~  439 (491)
T 4gc0_A          370 IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV---AHF  439 (491)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH---HHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---hhh
Confidence            2222222222222 33345788899999999999999999999999999999998888653211       100   001


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhccccccccCCchhh
Q 008020          531 RLDCFYGLLAALSFINFGLFLLCASWYKRKKAKQVPEM  568 (581)
Q Consensus       531 ~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  568 (581)
                      +....|++++++++++.++.+++.||+|+|++||.+++
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            12345788899999999999999999999999988764

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=5.5e-25  Score=232.84  Aligned_cols=359  Identities=14%  Similarity=0.092  Sum_probs=234.1

Q ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHH
Q 008020           25 TGGWVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFAT  104 (581)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~  104 (581)
                      +++++.+..+....++..+......+.+| ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            34455666666677777777665555555 46778999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..++.+++......+                     +.+.++++|++.|++.+...+...++++|.+|+++      |+
T Consensus       100 ~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~  152 (438)
T 3o7q_A          100 LYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GH  152 (438)
T ss_dssp             HHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HH
T ss_pred             HHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HH
Confidence            9999998883221112                     28889999999999999999999999999999999      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhh-cccc-------------------------hhhHHHHHHHHHHHHHHHHHHcc-c
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQ-DEVG-------------------------RSWGYGICSICMFTAILIFLSGT-R  237 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~i~~~~~~~~~~~~~~~~-~  237 (581)
                      +++++.+...++|..++|.+++++. +..+                         |++.|++.++..++..+..+..+ +
T Consensus       153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p  232 (438)
T 3o7q_A          153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP  232 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999987 5554                         89999766655444444333321 1


Q ss_pred             cccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcc
Q 008020          238 RYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTL  317 (581)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (581)
                      +.+++++++++..                                    .                       ....+  
T Consensus       233 ~~~~~~~~~~~~~------------------------------------~-----------------------~~~~~--  251 (438)
T 3o7q_A          233 ALQSDNHSDAKQG------------------------------------S-----------------------FSASL--  251 (438)
T ss_dssp             CCTTTCCCCSSTT------------------------------------S-----------------------HHHHH--
T ss_pred             ccccccccccccc------------------------------------c-----------------------hhhhH--
Confidence            1110000000000                                    0                       00000  


Q ss_pred             cCcchhHhHHHHHHHH-HHHHHHHHHHhhhccccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhc
Q 008020          318 CPVTRVEEVKMVIRLL-PIWATTILFWSTYAQMITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPL  396 (581)
Q Consensus       318 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~  396 (581)
                         ....+.+.+.... ..++............+.++..+..+.+      ....+.+.....+..++..++.+++.+|+
T Consensus       252 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          252 ---SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             ---HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ---HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               0000001111111 1111111111221222211011110111      11223344445566666677777776665


Q ss_pred             cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhh
Q 008020          397 LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFF  476 (581)
Q Consensus       397 ~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~  476 (581)
                      .+|          +.+..+.++.+++++.+.+..                   + .+.+..+++.+++.+...|..+.+.
T Consensus       323 ~~~----------~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~~~~~~g~~~~~~~~~~~~~~  372 (438)
T 3o7q_A          323 APH----------KVLAAYALIAMALCLISAFAG-------------------G-HVGLIALTLCSAFMSIQYPTIFSLG  372 (438)
T ss_dssp             CHH----------HHHHHHHHHHHHHHHHHHHCC-------------------H-HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             cch----------HHHHHHHHHHHHHHHHHHHcC-------------------C-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444          225566666666655444321                   1 1234445678888888899999999


Q ss_pred             hccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 008020          477 ITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSIVKAAT  514 (581)
Q Consensus       477 ~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~i~~~~  514 (581)
                      .|..|++ +++++++.. .+.+++.+++.+.+.+.+..
T Consensus       373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999987 999999887 67799999999999876543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.90  E-value=1.9e-23  Score=216.62  Aligned_cols=346  Identities=11%  Similarity=0.023  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHH
Q 008020           32 ALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTG  111 (581)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~  111 (581)
                      +.+....++..+....+.+.++.+ .+++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            455666777777777777777765 568999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHH
Q 008020          112 LLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  191 (581)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  191 (581)
                      +..++.                        +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++.+
T Consensus        81 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  130 (375)
T 2gfp_A           81 VAVTTS------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN  130 (375)
T ss_dssp             HHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence            888773                        38889999999999999999999999999999998      999999999


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCc
Q 008020          192 FVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSST  271 (581)
Q Consensus       192 ~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~  271 (581)
                      ...++|..++|.+++++.+..||++.|++.++..++..+......|+.   ++..++                       
T Consensus       131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------------  184 (375)
T 2gfp_A          131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET---RPVDAP-----------------------  184 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC---STTTCC-----------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc---CCCCcc-----------------------
Confidence            999999999999999999988999999877666554433222211111   000000                       


Q ss_pred             cccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHH-HHHHHHhhhcccc
Q 008020          272 ASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWA-TTILFWSTYAQMI  350 (581)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~  350 (581)
                                +    +             +         ...++     ++..+.|.+.......+ ............+
T Consensus       185 ----------~----~-------------~---------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (375)
T 2gfp_A          185 ----------R----T-------------R---------LLTSY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG  223 (375)
T ss_dssp             ----------C----C-------------C---------TTTCS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             ----------c----c-------------c---------HHHHH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0    0             0         00001     11112223322222211 1212222222111


Q ss_pred             ceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHH-HHHHHHHHHHH
Q 008020          351 TFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFL-SALGMASASVV  429 (581)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l-~~i~~~~~~~~  429 (581)
                       .+..+..+.+      ....+.+.....++.++..++.+++.+|..+            ++..+..+ ...+...+...
T Consensus       224 -~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~------------~~~~~~~~~~~~~~~~~~~~  284 (375)
T 2gfp_A          224 -VLMGAVLGLS------SMTVSILFILPIPAAFFGAWFAGRPNKRFST------------LMWQSVICCLLAGLLMWIPD  284 (375)
T ss_dssp             -CSSHHHHHHH------HHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH------------HHHHHHHHHHHTSSSSSHHH
T ss_pred             -HHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHh
Confidence             1111101111      1112334444555556666665555432211            13344433 22222211111


Q ss_pred             HHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHHHHHHHHHHHH
Q 008020          430 EVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLGFFFSSLLVSI  509 (581)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~~g~~~~~~  509 (581)
                      ...               ..+.+.++...++.+++.+...+....+..|..| +.||+++|+.+..+.+|..+++.+.+.
T Consensus       285 ~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~  348 (375)
T 2gfp_A          285 WFG---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM  348 (375)
T ss_dssp             HHH---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred             hhc---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            100               1133445566778889999999999999999999 899999999999999999999888776


Q ss_pred             HH
Q 008020          510 VK  511 (581)
Q Consensus       510 i~  511 (581)
                      +.
T Consensus       349 l~  350 (375)
T 2gfp_A          349 LP  350 (375)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.87  E-value=1.3e-22  Score=213.99  Aligned_cols=393  Identities=10%  Similarity=-0.008  Sum_probs=221.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.++.+....++....+..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++..+..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4566677777777777777788999999999999999999999999999999999999999998 999999988876654


Q ss_pred             HHHHH---HHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          109 GTGLL---AISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       109 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      +...+   .+....                       ...+..++.+.+++.|...+...+...+..++..+    +++.
T Consensus        86 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~  138 (417)
T 2cfq_A           86 MFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNF  138 (417)
T ss_dssp             CHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTC
T ss_pred             HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hccc
Confidence            32211   111000                       00123344444544444444444444444332211    1566


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhccc
Q 008020          186 FFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKV  265 (581)
Q Consensus       186 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  265 (581)
                      .++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++.   ++..+.                 
T Consensus       139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------  197 (417)
T 2cfq_A          139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDA---PSSATV-----------------  197 (417)
T ss_dssp             CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCC---SCSSCS-----------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccc---cccccc-----------------
Confidence            6777777788999999999999876 5899998866554333322221111110   000000                 


Q ss_pred             ccCCCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhh
Q 008020          266 ELPSSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWST  345 (581)
Q Consensus       266 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  345 (581)
                        ++.+      +   +   ..                       .+..++  ........+..+......+.....+..
T Consensus       198 --~~~~------~---~---~~-----------------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          198 --ANAV------G---A---NH-----------------------SAFSLK--LALELFRQPKLWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             --SSSS------S---S---CC-----------------------CCCCHH--HHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccc------c---c---cc-----------------------ccccHH--HHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence              0000      0   0   00                       000000  000000012222222111111111112


Q ss_pred             hcc-ccceeeeeccccccccccccc-cchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHH
Q 008020          346 YAQ-MITFSVEQATTMQRSIGNFKI-PAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGM  423 (581)
Q Consensus       346 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~  423 (581)
                      +.+ .+.++..   .....  +.+. ..+....++.+..++...+.+++.||+.+|+          .+..+.++.++++
T Consensus       239 ~~~~~~~~~~~---~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~----------~l~~~~~~~~~~~  303 (417)
T 2cfq_A          239 FDQQFANFFTS---FFATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRI  303 (417)
T ss_dssp             HHHHHHHHHHH---TSSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH----------HHHHHHHHHHHHH
Confidence            111 1111110   00000  0000 1123334444555556666677766665542          2455666665554


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH-HHHHHhHHHHH
Q 008020          424 ASASVVEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL-FLTTLSLGFFF  502 (581)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~~  502 (581)
                      +.+++.                   .+.+.+++..++.+++.....+..+.++.|.+|++.||++.++ ++..+.+|+.+
T Consensus       304 ~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~  364 (417)
T 2cfq_A          304 IGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             HHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence            444321                   1233444445556777777777788999999999999999999 47888999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          503 SSLLVSIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR  559 (581)
Q Consensus       503 g~~~~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~  559 (581)
                      ++.+.|.+.+.                .++...|.+.+++++++.++.++..++.++
T Consensus       365 gp~l~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          365 MSVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HTHHHHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             hhhhHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999866431                123556777788888877776666554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=4e-12  Score=134.24  Aligned_cols=178  Identities=16%  Similarity=0.080  Sum_probs=149.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-cchHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFL-GRYRTIAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grr~~l~~~~~~~~  107 (581)
                      |.++...+..++.....+++..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+. |||+.+..+..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            56788888889999999999999999999889999999999999999999999999999999942 78888877766655


Q ss_pred             -HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhH
Q 008020          108 -FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  186 (581)
Q Consensus       108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  186 (581)
                       ++.+++.+.   +.                   .+.+.+.+..++.|++.+...+...+++.|.+|++.      |+++
T Consensus       332 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  383 (451)
T 1pw4_A          332 TIATIVYWMN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  383 (451)
T ss_dssp             HHHHHHTTSC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred             HHHHHHHHHh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence             555444332   10                   125667777888899888888888899999999998      9999


Q ss_pred             HHHHHHHHHh-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          187 FSRFFFVIST-GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       187 ~~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +++.+...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus       384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 99999999999999999999999887776666655444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.35  E-value=1.2e-11  Score=130.25  Aligned_cols=168  Identities=15%  Similarity=0.141  Sum_probs=136.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTY-LGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      |.++...+..++.....+.+..+++.| +++.+|++..+.+...+...++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            467777788888888888899999999 8888899999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      ++.++..+..                        +.. ..+..++.+++.+...|...++..|.+|++       ++.+.
T Consensus       337 ~~~~~~~~~~------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~  384 (438)
T 3o7q_A          337 ALCLISAFAG------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS  384 (438)
T ss_dssp             HHHHHHHHCC------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred             HHHHHHHHcC------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence            8777666541                        123 334447788899999999999989988843       45555


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccc-hhhHHHHHHHHHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVG-RSWGYGICSICMFTAIL  230 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~i~~~~~~~~~~  230 (581)
                      ++.. ...+|..++|.+.|++.+..| ++..|++..++.++..+
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            5554 456999999999999999988 99999877655444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.25  E-value=2.2e-11  Score=127.90  Aligned_cols=175  Identities=10%  Similarity=0.007  Sum_probs=128.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---ChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV  105 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~  105 (581)
                      |.++...+..++....++....++|.|+.+.++.   +..+.+...+...++..++.++.|+++||+ |||+++..+.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            3444444444444555555556788888766553   234456667777778888999999999998 999999888877


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhh
Q 008020          106 QTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  185 (581)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  185 (581)
                      .+++.++.++.   +                     +.+.+.+...+.+++.+...+....++.|.+|++.      |++
T Consensus       299 ~~~~~~~~~~~---~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~  348 (417)
T 2cfq_A          299 MSVRIIGSSFA---T---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT  348 (417)
T ss_dssp             HHHHHHHHTTC---C---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred             HHHHHHHHHHh---c---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence            77766555433   1                     14556666667777766666777889999999888      999


Q ss_pred             HHHH-HHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHH
Q 008020          186 FFSR-FFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLS  234 (581)
Q Consensus       186 ~~~~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~  234 (581)
                      +.++ ++...++|+.++|.++|++.+..|++..|.+.+++.+++.++.+.
T Consensus       349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            9988 577888999999999999988888888888777766666555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.07  E-value=3.9e-10  Score=120.60  Aligned_cols=186  Identities=10%  Similarity=-0.017  Sum_probs=135.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHH-----HHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIA-----IFAT  104 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-----~~~~  104 (581)
                      ..+.+.+..++....+......++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+...     .+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            345555556666666677778888999988888878888888888999999999999999998 9886544     5666


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHh
Q 008020          105 VQTFGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  184 (581)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~  184 (581)
                      +..++.++.........               .....+.+.+.+..++.+++.+...+...+++.|.+|++.      |+
T Consensus       363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g  421 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS  421 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred             HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence            66666555444311000               0011235667777888999999989999999999999999      99


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020          185 YFFSRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRR  238 (581)
Q Consensus       185 ~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~  238 (581)
                      ++.++.+...++|..++|.+.+++.+. ++...|.+.+++.+++.++.+...++
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888764 66677776666655555555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.98  E-value=4e-09  Score=112.62  Aligned_cols=183  Identities=10%  Similarity=0.026  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 008020           30 PAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFG  109 (581)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~  109 (581)
                      .........++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence            334444444444444444444445556667788887777777788888999999999999999 9999999998888877


Q ss_pred             HHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHH
Q 008020          110 TGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  189 (581)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  189 (581)
                      .+.+........                  ........+.....+.+. +..|..+.+.+|.+|.+.      |+++.++
T Consensus       356 ~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~  410 (491)
T 4gc0_A          356 MFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAI  410 (491)
T ss_dssp             HHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHH
T ss_pred             HHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHH
Confidence            766554422111                  011222222222223332 344677889999999999      9999999


Q ss_pred             HHHHHHhhHHHHHHHHHHhhc------ccchhhHHHHHHHHHHHHHHHHHHcccc
Q 008020          190 FFFVISTGTLMAVTVLVYIQD------EVGRSWGYGICSICMFTAILIFLSGTRR  238 (581)
Q Consensus       190 ~~~~~~~g~~i~~~~~~~l~~------~~g~~~~f~i~~~~~~~~~~~~~~~~~~  238 (581)
                      .+....+|+.+++.+.+.+.+      ..++...|++.+++.+++.+..++..|+
T Consensus       411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            998899999998887766643      2345566776666666665555554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.84  E-value=8.2e-10  Score=113.65  Aligned_cols=164  Identities=12%  Similarity=-0.011  Sum_probs=127.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH-HH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATV-QT  107 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~-~~  107 (581)
                      |.++...+..++.....+.+..++|.|+++.+|++..+.+.+.+...++..++.++.|+++||+ ||+  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4667777888888888888999999999988999999999999999999999999999999998 772  2333322 22


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      .+..+......                    ...+.+.+++..++.+++.+...+...++..|.+| ++      |+++.
T Consensus       276 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~  328 (375)
T 2gfp_A          276 AGLLMWIPDWF--------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG  328 (375)
T ss_dssp             TSSSSSHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred             HHHHHHHHhhh--------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence            22221111100                    00135666777888899999999999999999987 66      99999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHH
Q 008020          188 SRFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICS  222 (581)
Q Consensus       188 ~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~  222 (581)
                      ++.+...++|..++|.+.+.+.+..+|...+.+..
T Consensus       329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999999888777877776544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.23  E-value=3.4e-06  Score=90.58  Aligned_cols=138  Identities=20%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             hhhhhhhHHHHHHHHHhhhhhhhhc-cccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 008020          372 ASLTVFFVAAILITLGAYDRLIIPL-LKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTTLPIS  450 (581)
Q Consensus       372 ~~~~~~~~~~~i~~~~l~~~~~~~~-~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      +.+.....++.++..++.+++.||+ ++|+          .+..+.++.+++.+...+.                  ..+
T Consensus        57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----------~~~~~~~~~~~~~~~~~~~------------------~~~  108 (524)
T 2xut_A           57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYN----------TILWLSLIYCVGHAFLAIF------------------EHS  108 (524)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----------HHHHHHHHHHHHHHHHHHT------------------SSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHHHHHHHh------------------ccc
Confidence            4445556666777778888887766 5543          3666777777776665543                  114


Q ss_pred             ehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHH---HHHHHhHHHHHHHHHHHHHHhhhcCCCCCCCcCCCC
Q 008020          451 VFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGL---FLTTLSLGFFFSSLLVSIVKAATGSNGKHGWVGENI  527 (581)
Q Consensus       451 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~lg~~~g~~~~~~i~~~~~~~~~~~w~~~~~  527 (581)
                      .+.+++..++.|++.+...|...+++.|.+|++.|++..+.   .+....+|..+++.+.+.+.+.              
T Consensus       109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------------  174 (524)
T 2xut_A          109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--------------  174 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--------------
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------
Confidence            45667778889999999999999999999999999877666   8888899999999887765421              


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhh
Q 008020          528 NKGRLDCFYGLLAALSFINFGLFLLC  553 (581)
Q Consensus       528 ~~~~~~~~f~~~~~~~~i~~~~~~~~  553 (581)
                        .++.+.|++.+++.++..++.++.
T Consensus       175 --~g~~~~f~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          175 --FGAAVAFGIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHh
Confidence              123566777777666665555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.38
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.27

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.9e-27  Score=246.70  Aligned_cols=393  Identities=8%  Similarity=-0.072  Sum_probs=231.5

Q ss_pred             HHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008020           49 AVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQ  128 (581)
Q Consensus        49 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      ...+.++++ ++|++.+|.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.++++++....        
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  113 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT--------  113 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH--------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh--------
Confidence            344556776 5899999999999999999999999999999999 999999999999999888877652211        


Q ss_pred             CCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHh
Q 008020          129 ATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFVISTGTLMAVTVLVYI  208 (581)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~l  208 (581)
                                  .+...+++.|++.|++.|...+...++++|.+|+++      |++++++.+.+.++|..++|.+++.+
T Consensus       114 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         114 ------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             ------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhH
Confidence                        126678999999999999999999999999999998      99999999999999999999888876


Q ss_pred             hcc-cchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccCCCccccccCCccccccccC
Q 008020          209 QDE-VGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELPSSTASLYEDYPEESRIQHT  287 (581)
Q Consensus       209 ~~~-~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  287 (581)
                      ... .+|++.|++..+..++..++.+...++.+++.......                    ..    +.+.+++..+..
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~----~~~~~~~~~~~~  231 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE--------------------EY----KNDYPDDYNEKA  231 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT--------------------TT----CCC---------
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh--------------------hh----hhhcccchhhcc
Confidence            554 47999988777665555444444333222111110000                    00    000000000000


Q ss_pred             cccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHH-HHHHHHHHHhhhccccceeeeecccccccccc
Q 008020          288 YQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLP-IWATTILFWSTYAQMITFSVEQATTMQRSIGN  366 (581)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (581)
                                   +.        ..... ....+.....+.+..... ..+.....+......+.++ .+....+     
T Consensus       232 -------------~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----  283 (447)
T d1pw4a_         232 -------------EQ--------ELTAK-QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL-KEVKHFA-----  283 (447)
T ss_dssp             -------------------------CCT-HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHB-TTBSCCC-----
T ss_pred             -------------cc--------ccchh-hHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhc-ccccccc-----
Confidence                         00        00000 000000011122222111 1111111112211111111 1111111     


Q ss_pred             ccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008020          367 FKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASVVEVKRLAVAKANGTTGTT  446 (581)
Q Consensus       367 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  446 (581)
                       ............+..++...+.+++.++..++..       .........+..++.......                 
T Consensus       284 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-----------------  338 (447)
T d1pw4a_         284 -LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-------GATGVFFMTLVTIATIVYWMN-----------------  338 (447)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-------HHHHHHHHHHHHHHHHHTTSC-----------------
T ss_pred             -cchhhhhhhcchhhhhhhhhhhhhhhhhcccccc-------ccccchhHHHHHHHHHHHHhc-----------------
Confidence             1112333444555556666666666655544321       111111111111111111100                 


Q ss_pred             ceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHHHHHHhHH-HHHHHHHHHHHHhhhcCCCCCCCcCC
Q 008020          447 LPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLFLTTLSLG-FFFSSLLVSIVKAATGSNGKHGWVGE  525 (581)
Q Consensus       447 ~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg-~~~g~~~~~~i~~~~~~~~~~~w~~~  525 (581)
                      ...+.+..+..+++.+++.....+..+.+..|.+|++.||+++|+.+....++ ..+++.+.+.+.+..           
T Consensus       339 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~-----------  407 (447)
T d1pw4a_         339 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----------  407 (447)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-----------
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            01233455556667788888888889999999999999999999998877764 566788888765321           


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 008020          526 NINKGRLDCFYGLLAALSFINFGLFLLCASWYKRKKA  562 (581)
Q Consensus       526 ~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~  562 (581)
                           ++...|++.+++.+++.++.++..++.++|++
T Consensus       408 -----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  439 (447)
T d1pw4a_         408 -----GWDGGFMVMIGGSILAVILLIVVMIGEKRRHE  439 (447)
T ss_dssp             -----CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----ChHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence                 12455666677777776666655554444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.2e-23  Score=215.65  Aligned_cols=398  Identities=10%  Similarity=-0.004  Sum_probs=229.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q 008020           29 VPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTF  108 (581)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~  108 (581)
                      |.+|.+.+..++..+....+.+.++.|+++++|+|.++.|++.+++.++..++++++|+++||+ ||||+++++.....+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5788899999999999888899999999999999999999999999999999999999999999 999999999888888


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHH
Q 008020          109 GTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  188 (581)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  188 (581)
                      +..+.......+                    ......++.+.+.+.+.+...........+..+++.    .++....+
T Consensus        86 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  141 (417)
T d1pv7a_          86 MFAPFFIFIFGP--------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFG  141 (417)
T ss_dssp             THHHHHHHTHHH--------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHH
T ss_pred             HHHHHHHhhhhh--------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHH
Confidence            877776652200                    011122333443333333333333333333222222    12555666


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHccccccccCCCCChhHHHHHHHHHHHhhcccccC
Q 008020          189 RFFFVISTGTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFLSGTRRYRYKKCSGSPIVHICQVVVAARKKRKVELP  268 (581)
Q Consensus       189 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  268 (581)
                      ........+..++|.+++.+.+. +|+..+........+......+..++.+..+++.++..                  
T Consensus       142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  202 (417)
T d1pv7a_         142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG------------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH------------------
T ss_pred             HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh------------------
Confidence            67777888899999999888764 45555544444433333333333222211111110000                  


Q ss_pred             CCccccccCCccccccccCcccchhccccccccCCCCCCCCccCCCCcccCcchhHhHHHHHHHHHHHHHHHHHHhhhcc
Q 008020          269 SSTASLYEDYPEESRIQHTYQFRCLDKASVVTNTDYSEDGAFVSNPWTLCPVTRVEEVKMVIRLLPIWATTILFWSTYAQ  348 (581)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  348 (581)
                                      +..+.....+....                   ....  .........................
T Consensus       203 ----------------~~~~~~~~~~~~~~-------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  245 (417)
T d1pv7a_         203 ----------------ANHSAFSLKLALEL-------------------FRQP--KLWFLSLYVIGVSCTYDVFDQQFAN  245 (417)
T ss_dssp             ----------------SCCCCCCHHHHHHH-------------------TTSS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------hhcccccccccccc-------------------cccc--cccchhhhhHHHHHHHHhhhccccc
Confidence                            00000000000000                   0000  0011111111111111111111110


Q ss_pred             ccceeeeeccccccccccccccchhhhhhhHHHHHHHHHhhhhhhhhccccccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 008020          349 MITFSVEQATTMQRSIGNFKIPAASLTVFFVAAILITLGAYDRLIIPLLKKRKGKPGFSNLQLIAIGLFLSALGMASASV  428 (581)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~l~~g~~l~~i~~~~~~~  428 (581)
                      .......   .....    ............+...+...+.+++.+|..+|          +.+..+.++.+++.+.+.+
T Consensus       246 ~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~----------~~~~~~~~~~~~~~~~~~~  308 (417)
T d1pv7a_         246 FFTSFFA---TGEQG----TRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHTTSSS---CHHHH----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccc---ccccc----hhhhcccccccccccccchhhhhhhhcccccc----------cchhhhHHHHHHhhhcccc
Confidence            0000000   00000    00111222333444444555555554433332          3356666666666555543


Q ss_pred             HHHHHHHHHhhcCCCCCCceeeehhhHHHHHHHHHHHHHHhhhHHHhhhccCCcchhHHHHHHH-HHHHhHHHHHHHHHH
Q 008020          429 VEVKRLAVAKANGTTGTTLPISVFYLIPQFFLVGSGEGFMYTGQLDFFITQSPKGMKTMSTGLF-LTTLSLGFFFSSLLV  507 (581)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~~g~~~~  507 (581)
                      .                   .+.+.+++..++.+++.+...+..++++.|.+|++.|+++.|+. ++.+.+|..+++.+.
T Consensus       309 ~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         309 A-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             C-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             c-------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                   34556677778889999999999999999999999999999985 567789999999999


Q ss_pred             HHHHhhhcCCCCCCCcCCCCccchhhHHHHHHHHHHHHHHHHHHhhhccccc
Q 008020          508 SIVKAATGSNGKHGWVGENINKGRLDCFYGLLAALSFINFGLFLLCASWYKR  559 (581)
Q Consensus       508 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~~~~~~~  559 (581)
                      |.+.+..                ++...|++.+++.++..++.++..++.+.
T Consensus       370 G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         370 GNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            8876432                23566788888888887777777655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.3e-12  Score=132.97  Aligned_cols=180  Identities=16%  Similarity=0.010  Sum_probs=140.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Q 008020           28 WVPAALSLGIEICERLSTMGIAVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQT  107 (581)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~  107 (581)
                      .|.++......++.....++...+++.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35677888888889999999999999999999999999999999999999999999999999998 88765444443333


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHH
Q 008020          108 FGTGLLAISTKQPQLRPPPCQATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  187 (581)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  187 (581)
                      +...........+                   ..+.+...+..++.|++.++..+....+..|.+|++.      |+++.
T Consensus       327 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~  381 (447)
T d1pw4a_         327 LVTIATIVYWMNP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAA  381 (447)
T ss_dssp             HHHHHHHHTTSCC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHH
T ss_pred             HHHHHHHHHHhcc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            3222222211111                   1236667777778888888888889999999999988      99999


Q ss_pred             HHHHHHHHh-hHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Q 008020          188 SRFFFVIST-GTLMAVTVLVYIQDEVGRSWGYGICSICMFTAILIFL  233 (581)
Q Consensus       188 ~~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~i~~~~~~~~~~~~~  233 (581)
                      ++.+...++ |.+++|.+.|++.+.+||+..|++...+.+++.++..
T Consensus       382 g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         382 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            998888776 5577899999999999999998876666555544433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=3.8e-12  Score=128.69  Aligned_cols=157  Identities=11%  Similarity=0.024  Sum_probs=127.8

Q ss_pred             HHHHHHHhccccCCChhhhhhHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 008020           49 AVNLVTYLGGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADSFLGRYRTIAIFATVQTFGTGLLAISTKQPQLRPPPCQ  128 (581)
Q Consensus        49 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (581)
                      ......+..+..+.+....+.......++..++..+.+++.||+ |||+.+.++.++..++.++..+.   +        
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~---~--------  310 (417)
T d1pv7a_         243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA---T--------  310 (417)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC---C--------
T ss_pred             ccccccccccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc---c--------
Confidence            33334444445566667777888888899999999999999998 99999999998888888777665   2        


Q ss_pred             CCccccccCCchhhHHHHHHHHHHHHHhccCcccchhhhcccCCCCCChHHHhHHhhHHHHH-HHHHHhhHHHHHHHHHH
Q 008020          129 ATDITKCQHASGIQMGVLYISLYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF-FFVISTGTLMAVTVLVY  207 (581)
Q Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~l~glg~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~i~~~~~~~  207 (581)
                                   +.+.+++..++.+++.+...+...+++.|.+|++.      |++.++.. +....+|..++|.+.|+
T Consensus       311 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~  371 (417)
T d1pv7a_         311 -------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             -------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         27778888889999999999999999999999999      99999975 45677999999999999


Q ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHcc
Q 008020          208 IQDEVGRSWGYGICSICMFTAILIFLSGT  236 (581)
Q Consensus       208 l~~~~g~~~~f~i~~~~~~~~~~~~~~~~  236 (581)
                      +.+..|++..|++.+++.++..++..+..
T Consensus       372 l~~~~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         372 MYESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999887776666555544433