Citrus Sinensis ID: 008033

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
MAEDTQKPAAAEEVAVEKPVAEKEKEQAPAPVPEPEAPEKRTEESAAAAGVEEVVEAEKPKPVEGEKIAQSASFKEESNVVGELPDPQKKALDELKQLIQDALNKHEFTAPPPPPPPAAKEEEKAPEAPPKEKEAAAEEQVVKAEEPKTGEEEKKPAVEVESKAPESEPAAPAEVEVVVEKVATVDEDGAKTVEAIEETIVAAKPEVEEAEVTTTKKEAEVAAPSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKPSSD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHccccccccccccHHcccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccccccccEEEEcccccHHHHHcccccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEEEEcccEEEEEEEEccccccEEEEccccccccccccccccccEEcccccEEEEEEEcccccccEEEEEEEEccccc
ccccccccccccccEEEEEcccccEEEccccccccccccccccccccccccEEEccccccccccccccccccccHHHcccHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccccccccccccccccccHHcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccHccccccHHccHHHHHHccccHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHccccccccccEEEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHccHHHHHHEEEEEcccHHHHHHHHHccccccccccEEEEEccccHHHHHHHHccHHHccHHcccccccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEEEcccEEEEEEEEEccccccEEEEEccccccccccccEEEccEEEccccEEEEEEEcccccccEEEEEEEEEcccc
maedtqkpaaaeevavekpvaekekeqapapvpepeapekrteeSAAAAGVEEvveaekpkpvegekiaqsasfkeesnvvgelpdpqKKALDELKQLIQDALNkheftapppppppaakeeekapeappkekEAAAEEQVVkaeepktgeeekkpaveveskapesepaapaEVEVVVEKVATVDEDGAKTVEAIEETIVAakpeveeaevtttkkeaevaapsdeqtkdkeaevppekvfiwgipllgddrsdTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVleedlgndldKVVFMhgvdkeghpvcynvfgefqnkelyhnnfsddeKRTKFLKWRIQFLEKSIrkldfspsgictivqindlknspgpakrdlrIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMispfltqrtkskfvfsgpsksAETLFKyiapeqvpvqygglsregeqeftttdpvtevvvkpaskytveipvtERSILVWELRVLGwdvsygaefvpsaegsyTVIVSktrkvaptdepvicdtfkigepgkvvltidnqsskkkkllyrsktkpssd
maedtqkpaaaeevavekpvaekekeqapapvpepeapekrTEESAAaagveevveaekpkpvegekiaqsasfkeesnvvgELPDPQKKALDELKQLIQDALNKHEFTAPPPPPPPAAKEEEKAPEAPPKEKEAAAEEQvvkaeepktgeeekkpaveveskapesepaapaevEVVVEKVATVDEDGAKTVEAIEEtivaakpeveeaevtttkkeaevaapsdeqtkdkeaevppekvfiwgipllgddrSDTILLKFlrardfkvkdaftMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEksirkldfspsgICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEqeftttdpvtevvvkpaskytveipvtersiLVWELRVLGWDVSYGAEfvpsaegsyTVIVSktrkvaptdepvicdtfkigepgkvvltidnqsskkkkllyrsktkpssd
MAEDTqkpaaaeevavekpvaekekeqapapvpepeapekRTeesaaaagveevveaekpkpvegeKIAQSASFKEESNVVGELPDPQKKALDELKQLIQDALNKHEFTapppppppaakeeekapeappkekeaaaeeqvvkaeepktgeeekkpaveveskapesepaapaevevvvekvaTVDEDGAKTVEAIEETIvaakpeveeaevtttkkeaevaapSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQsskkkkllyrsktkPSSD
********************************************************************************************************************************************************************************VVVEKVATV*******V*AI***I***************************************KVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLK*******RDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLS*****EFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTI*********************
*************************************************************************************************************************************************************************************************************************************KDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEF****************************TFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKPS**
****************************************************EVVEAEKPKPVEGEKIAQSA***********LPDPQKKALDELKQLIQDALNKHEFTAP***************************************************************VEVVVEKVATVDEDGAKTVEAIEETIVAAKP******************************VPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQS*****************
************EVAVEKPVAEKEKEQAPAP**********************************************SNVVGELPDPQKKALDELKQLIQDALNKHE*******************************************************************************************************************APSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKP***
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MAEDTQKPAAAEEVAVEKPVAEKEKEQAPAPVPEPEAPEKRTEESAAAAGVEEVVEAEKPKPVEGEKIAQSASFKEESNVVGELPDPQKKALDELKQLIQDALNKHEFTAPPPPPPPAAKEEEKAPEAPPKEKEAAAEEQVVKAEEPKTGEEEKKPAVEVESKAPESEPAAPAEVEVVVEKVATVDEDGAKTVEAIEETIVAAKPEVEEAEVTTTKKEAEVAAPSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKPSSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query580 2.2.26 [Sep-21-2011]
Q56Z59490 Patellin-3 OS=Arabidopsis yes no 0.794 0.940 0.539 1e-140
Q9M0R2668 Patellin-5 OS=Arabidopsis no no 0.582 0.505 0.639 1e-140
Q56ZI2683 Patellin-2 OS=Arabidopsis no no 0.748 0.635 0.531 1e-127
Q56WK6573 Patellin-1 OS=Arabidopsis no no 0.808 0.818 0.508 1e-126
Q94C59540 Patellin-4 OS=Arabidopsis no no 0.612 0.657 0.491 1e-102
Q9SCU1409 Patellin-6 OS=Arabidopsis no no 0.574 0.814 0.502 6e-97
Q6C9R9362 Phosphatidylinositol tran yes no 0.344 0.552 0.303 1e-20
A5DEQ9336 Phosphatidylinositol tran N/A no 0.358 0.619 0.280 6e-20
A3LPR9328 Phosphatidylinositol tran yes no 0.387 0.685 0.286 4e-19
Q75DK1308 SEC14 cytosolic factor OS yes no 0.360 0.678 0.325 4e-19
>sp|Q56Z59|PATL3_ARATH Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/478 (53%), Positives = 331/478 (69%), Gaps = 17/478 (3%)

Query: 112 PPPPPPAAKEEEKAPEAPPKEKEAAAEEQVVKAEEPKTGEEEKKPAVEVESKAPESEPAA 171
           P P    ++  E   +A P E E    E+V +   P+T +   KP    E  A E  P  
Sbjct: 17  PSPSLTPSEVSESTQDALPTETETL--EKVTETNPPETADTTTKPE---EETAAEHHPPT 71

Query: 172 PAEVEVV-VEKVATVDEDGAKTV-----EAIEETIVAAKPEVEE-AEVTTTKKEA--EVA 222
             E E    EK    DE   K V       I + + + K E  + ++++ ++K++  E+ 
Sbjct: 72  VTETETASTEKQEVKDEASQKEVAEEKKSMIPQNLGSFKEESSKLSDLSNSEKKSLDELK 131

Query: 223 APSDEQTKDKEAEVPPEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRW 282
               E   + +    PE+V IWGIPLL DDRSD +LLKFLRAR+FKVKD+F M+KNT++W
Sbjct: 132 HLVREALDNHQFTNTPEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKW 191

Query: 283 RNEFGIDAVLEEDLGNDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTK 342
           R EF ID ++EEDL +DLDKVVFMHG D+EGHPVCYNV+GEFQNKELY+  FSD+EKR  
Sbjct: 192 RKEFKIDELVEEDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKH 251

Query: 343 FLKWRIQFLEKSIRKLDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPE 402
           FL+ RIQFLE+SIRKLDFS  G+ TI Q+ND+KNSPG  K++LR AT QAV LLQDNYPE
Sbjct: 252 FLRTRIQFLERSIRKLDFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPE 311

Query: 403 FVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGG 462
           FV +Q FINVPWWYL F  +I PF+T R+KSK VF+GPS+SAETLFKYI+PEQVPVQYGG
Sbjct: 312 FVFKQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGG 371

Query: 463 LS---REGEQEFTTTDPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVP 519
           LS    +   +F+  D  +E+ VKP +K TVEI + E+  LVWE+RV GW+VSY AEFVP
Sbjct: 372 LSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVP 431

Query: 520 SAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSSKKKKLLYRSKTKP 577
             + +YTV++ K RK+ P+DEPV+  +FK+ E GKV+LT+DN +SKKKKL+YR   KP
Sbjct: 432 EEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKP 489
Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2 Back     alignment and function description
>sp|Q56ZI2|PATL2_ARATH Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2 Back     alignment and function description
>sp|Q56WK6|PATL1_ARATH Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2 Back     alignment and function description
>sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2 Back     alignment and function description
>sp|Q9SCU1|PATL6_ARATH Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1 Back     alignment and function description
>sp|Q6C9R9|SFH5_YARLI Phosphatidylinositol transfer protein SFH5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH5 PE=3 SV=1 Back     alignment and function description
>sp|A5DEQ9|SFH5_PICGU Phosphatidylinositol transfer protein SFH5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|A3LPR9|SFH5_PICST Phosphatidylinositol transfer protein SFH5 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query580
255561582627 Patellin-3, putative [Ricinus communis] 0.908 0.840 0.678 0.0
82469976604 patellin 1 [Cucurbita pepo] 0.967 0.928 0.630 0.0
449526800606 PREDICTED: patellin-3-like [Cucumis sati 0.986 0.943 0.625 0.0
255568869606 Patellin-3, putative [Ricinus communis] 0.893 0.854 0.628 1e-180
224122762513 predicted protein [Populus trichocarpa] 0.822 0.929 0.636 1e-179
356507414557 PREDICTED: patellin-5-like [Glycine max] 0.937 0.976 0.588 1e-173
84453208607 putative cytosolic factor [Trifolium pra 0.684 0.654 0.722 1e-170
356516429557 PREDICTED: patellin-3-like [Glycine max] 0.858 0.894 0.595 1e-170
356527226575 PREDICTED: patellin-5-like [Glycine max] 0.867 0.874 0.583 1e-170
359480790576 PREDICTED: patellin-5-like [Vitis vinife 0.879 0.885 0.639 1e-170
>gi|255561582|ref|XP_002521801.1| Patellin-3, putative [Ricinus communis] gi|223539014|gb|EEF40611.1| Patellin-3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/569 (67%), Positives = 433/569 (76%), Gaps = 42/569 (7%)

Query: 52  EEVVEAEKP--KPVEGE---KIAQSASFKEESNVVGELPDPQKKALDELKQLIQDALNKH 106
           E VVEA K   KP EG    KI+QS SFKEE+NVVGELP+ QKKALDE KQLIQ+ALNKH
Sbjct: 61  EAVVEAMKGEDKPKEGTEEVKISQSVSFKEETNVVGELPEAQKKALDEFKQLIQEALNKH 120

Query: 107 EFTAPPPPPPPAAKEEEKAPEAPPKEKEAAAEEQVVKAEEPKTGEEEKKPAVEVESKAP- 165
           EFTAPPPPP    KEEEK    P K +E   EE+   ++ P T EE K    E E+ AP 
Sbjct: 121 EFTAPPPPPS-PVKEEEKKVAEPEKTEEPKVEEKTT-SDAPSTSEEPKPVGAESETAAPP 178

Query: 166 -------------------------------ESEPAAPAEVEVVVEKVATVDEDGAKTVE 194
                                          +         EVVV K++TVDEDGAKTVE
Sbjct: 179 PPVMEVKEEEKVVEEKKEEKVEEKVDVKEETKEAAPVVVAEEVVVSKISTVDEDGAKTVE 238

Query: 195 AIEETIVAAKPEVEEAEVTTTKKEAEVAAPSDE---QTKDKEAEVPPEKVFIWGIPLLGD 251
           AIEET+VA        E      +   AAP +E   +        PPE+VFIWGIP+LGD
Sbjct: 239 AIEETVVAVSAPPAAVEEPAAPAKEAEAAPVEETKAEETPAPPPPPPEEVFIWGIPILGD 298

Query: 252 DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVVFMHGVDK 311
           ++SD ILLKFLRARDFKVKDAFTMIKNTVRWR EFGIDA+LEEDLGN+L+K VFMHG D 
Sbjct: 299 EKSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALLEEDLGNELEKAVFMHGFDT 358

Query: 312 EGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFSPSGICTIVQI 371
           EGHPVCYNVFG FQ KELY N F+D+EKR KFL+WRIQFLEKSIRKLDFSP+GICTIVQ+
Sbjct: 359 EGHPVCYNVFGAFQEKELYQNCFADEEKRVKFLRWRIQFLEKSIRKLDFSPNGICTIVQV 418

Query: 372 NDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRT 431
           NDLKNSPGPAKR+LR ATNQA+ +LQDNYPEFVA+QVFINVPWWYLAFNRMISPFLTQRT
Sbjct: 419 NDLKNSPGPAKRELRQATNQALAILQDNYPEFVAKQVFINVPWWYLAFNRMISPFLTQRT 478

Query: 432 KSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEVVVKPASKYTVE 491
           KSKFVF+GPSKSAETLFKY+A EQVPVQYGGLSREG QEF+ +D VTEV +KPA+K+TVE
Sbjct: 479 KSKFVFAGPSKSAETLFKYVAAEQVPVQYGGLSREGVQEFSVSDAVTEVTIKPATKHTVE 538

Query: 492 IPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRKVAPTDEPVICDTFKIGE 551
              +ER +LVWELRV+GWDVSYGAEFVPSA+  YTVIVSK RKV+P+DEPVICDTFKI E
Sbjct: 539 FSFSERCLLVWELRVVGWDVSYGAEFVPSADDGYTVIVSKARKVSPSDEPVICDTFKISE 598

Query: 552 PGKVVLTIDNQSSKKKKLLYRSKTKPSSD 580
           PGKVVLTIDNQ+SKKKKLLYRSKTKP S+
Sbjct: 599 PGKVVLTIDNQTSKKKKLLYRSKTKPLSE 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|82469976|gb|ABB77236.1| patellin 1 [Cucurbita pepo] Back     alignment and taxonomy information
>gi|449526800|ref|XP_004170401.1| PREDICTED: patellin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255568869|ref|XP_002525405.1| Patellin-3, putative [Ricinus communis] gi|223535296|gb|EEF36972.1| Patellin-3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224122762|ref|XP_002330469.1| predicted protein [Populus trichocarpa] gi|222871881|gb|EEF09012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356507414|ref|XP_003522462.1| PREDICTED: patellin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|84453208|dbj|BAE71201.1| putative cytosolic factor [Trifolium pratense] Back     alignment and taxonomy information
>gi|356516429|ref|XP_003526897.1| PREDICTED: patellin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|356527226|ref|XP_003532213.1| PREDICTED: patellin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|359480790|ref|XP_002271899.2| PREDICTED: patellin-5-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query580
TAIR|locus:2207016490 AT1G72160 "AT1G72160" [Arabido 0.558 0.661 0.663 3e-129
TAIR|locus:2141563668 AT4G09160 "AT4G09160" [Arabido 0.555 0.482 0.64 1.7e-122
TAIR|locus:2009502683 PATL2 "PATELLIN 2" [Arabidopsi 0.556 0.472 0.625 6.5e-120
TAIR|locus:2207001573 PATL1 "AT1G72150" [Arabidopsis 0.620 0.628 0.549 2.7e-111
TAIR|locus:2204594540 AT1G30690 [Arabidopsis thalian 0.562 0.603 0.491 3e-95
TAIR|locus:2098282409 AT3G51670 "AT3G51670" [Arabido 0.570 0.809 0.492 1.3e-92
DICTYBASE|DDB_G0270022444 DDB_G0270022 "cellular retinal 0.527 0.689 0.278 1.3e-30
SGD|S000004684304 SEC14 "Phosphatidylinositol/ph 0.360 0.687 0.308 1.5e-23
CGD|CAL0005528320 orf19.4897 [Candida albicans ( 0.389 0.706 0.264 2.5e-19
UNIPROTKB|E1C8I7410 LOC100858741 "Uncharacterized 0.362 0.512 0.294 2.7e-18
TAIR|locus:2207016 AT1G72160 "AT1G72160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1178 (419.7 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
 Identities = 217/327 (66%), Positives = 266/327 (81%)

Query:   238 PEKVFIWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLG 297
             PE+V IWGIPLL DDRSD +LLKFLRAR+FKVKD+F M+KNT++WR EF ID ++EEDL 
Sbjct:   147 PEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLV 206

Query:   298 NDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRK 357
             +DLDKVVFMHG D+EGHPVCYNV+GEFQNKELY+  FSD+EKR  FL+ RIQFLE+SIRK
Sbjct:   207 DDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRK 266

Query:   358 LDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYL 417
             LDFS  G+ TI Q+ND+KNSPG  K++LR AT QAV LLQDNYPEFV +Q FINVPWWYL
Sbjct:   267 LDFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYL 326

Query:   418 AFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREG---EQEFTTT 474
              F  +I PF+T R+KSK VF+GPS+SAETLFKYI+PEQVPVQYGGLS +      +F+  
Sbjct:   327 VFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLE 386

Query:   475 DPVTEVVVKPASKYTVEIPVTERSILVWELRVLGWDVSYGAEFVPSAEGSYTVIVSKTRK 534
             D  +E+ VKP +K TVEI + E+  LVWE+RV GW+VSY AEFVP  + +YTV++ K RK
Sbjct:   387 DSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRK 446

Query:   535 VAPTDEPVICDTFKIGEPGKVVLTIDN 561
             + P+DEPV+  +FK+ E GKV+LT+DN
Sbjct:   447 MRPSDEPVLTHSFKVNELGKVLLTVDN 473
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2141563 AT4G09160 "AT4G09160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009502 PATL2 "PATELLIN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207001 PATL1 "AT1G72150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204594 AT1G30690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098282 AT3G51670 "AT3G51670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270022 DDB_G0270022 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004684 SEC14 "Phosphatidylinositol/phosphatidylcholine transfer protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0005528 orf19.4897 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8I7 LOC100858741 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56Z59PATL3_ARATHNo assigned EC number0.53970.79480.9408yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 3e-40
smart00516158 smart00516, SEC14, Domain in homologues of a S 7e-34
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 4e-28
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-08
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 1e-08
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 3e-07
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 9e-07
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 2e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 3e-06
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 4e-06
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 8e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 9e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 9e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 9e-06
PRK05306 746 PRK05306, infB, translation initiation factor IF-2 9e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 2e-05
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 2e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-05
PRK05035695 PRK05035, PRK05035, electron transport complex pro 3e-05
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 4e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-05
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 2e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 2e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 4e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 4e-04
COG52714600 COG5271, MDN1, AAA ATPase containing von Willebran 5e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 6e-04
COG3064387 COG3064, TolA, Membrane protein involved in colici 7e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 7e-04
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.001
TIGR02927579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 0.001
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 0.001
PLN032371465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 0.001
PRK07994647 PRK07994, PRK07994, DNA polymerase III subunits ga 0.002
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.002
PRK13108460 PRK13108, PRK13108, prolipoprotein diacylglyceryl 0.002
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 0.002
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.002
PRK07735430 PRK07735, PRK07735, NADH dehydrogenase subunit C; 0.003
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 0.003
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 0.004
PRK11855547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 0.004
PTZ00441576 PTZ00441, PTZ00441, sporozoite surface protein 2 ( 0.004
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  143 bits (362), Expect = 3e-40
 Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 298 NDLDKVVFMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRK 357
            +L KV ++ G DKEG PV     G     +    +   +E     L++ +  LEK +++
Sbjct: 5   KELGKVGYLGGRDKEGRPVLIIRAG----NKDLSKSLDSEE----LLRYLVYTLEKLLQE 56

Query: 358 LDFSPSGICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYL 417
            D    G   I+   DLK               + + +LQDNYPE +     IN PW++ 
Sbjct: 57  DDEQVEGFVVII---DLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFK 113

Query: 418 AFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGL 463
              +++ PFL+++T+ K VF G  K  E L KYI  EQ+P +YGG 
Sbjct: 114 VLWKIVKPFLSEKTRKKIVFLGSDK--EELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated Back     alignment and domain information
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 580
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.95
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.93
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.9
PF13897136 GOLD_2: Golgi-dynamics membrane-trafficking 99.85
KOG3878469 consensus Protein involved in maintenance of Golgi 99.5
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.46
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.27
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.1
KOG3287 236 consensus Membrane trafficking protein, emp24/gp25 97.52
KOG1693209 consensus emp24/gp25L/p24 family of membrane traff 95.09
KOG1692201 consensus Putative cargo transport protein EMP24 ( 94.76
PF01105183 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro 84.94
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-37  Score=320.14  Aligned_cols=225  Identities=32%  Similarity=0.500  Sum_probs=188.4

Q ss_pred             ChhHHH-hhcCCCCCC-CCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCcccc-cccccce--eEeeeccCC
Q 008033          237 PPEKVF-IWGIPLLGD-DRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEED-LGNDLDK--VVFMHGVDK  311 (580)
Q Consensus       237 ~~~~~~-~W~~PlL~~-~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~-l~~el~k--~~~l~G~Dk  311 (580)
                      .+..++ +|..|+|+. ..||.+||||||||+||+++|.+||.+++.||.++++|.+.... ...++.+  ...++|.|+
T Consensus        25 ~i~~lr~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~  104 (317)
T KOG1471|consen   25 VIAQLRWLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDK  104 (317)
T ss_pred             HHHHHHHHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccchhhhhhccccccccCC
Confidence            455665 677999995 88999999999999999999999999999999999999988751 1133333  356899999


Q ss_pred             CCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhh-----cCCCCCeeEEEEEEeCCCCCCCCc-hhH
Q 008033          312 EGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKL-----DFSPSGICTIVQINDLKNSPGPAK-RDL  385 (580)
Q Consensus       312 ~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l-----~~~~~~i~~ivvIiDlkG~s~ls~-~~l  385 (580)
                      .|+||++.+.|..|.++++....     ..+++++.+.-+|+.+..+     .....+++|+++|+||+|+++..+ ...
T Consensus       105 ~g~~v~~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~  179 (317)
T KOG1471|consen  105 EGRPVYIERLGKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPA  179 (317)
T ss_pred             CCCEEEEeccCCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHH
Confidence            99999999999999999987653     4567777777777665322     122467999999999999863322 123


Q ss_pred             HHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCCC
Q 008033          386 RIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSR  465 (580)
Q Consensus       386 ~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~~  465 (580)
                      +..++.++.++|+|||++++++||||+|++|+++|++|+|||+++|++||+++++ ++.+.|+++|++++||.+|||++.
T Consensus       180 ~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k~i~~~~LP~~yGG~~~  258 (317)
T KOG1471|consen  180 PTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLKYIPPEVLPEEYGGTCG  258 (317)
T ss_pred             HHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-CchhhhhhhCCHhhCccccCCCcc
Confidence            5679999999999999999999999999999999999999999999999995544 589999999999999999999999


Q ss_pred             CC
Q 008033          466 EG  467 (580)
Q Consensus       466 ~~  467 (580)
                      +.
T Consensus       259 ~~  260 (317)
T KOG1471|consen  259 DL  260 (317)
T ss_pred             cc
Confidence            85

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking Back     alignment and domain information
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 3e-19
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-17
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 4e-17
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 6e-16
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 8e-16
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 2e-15
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 1e-14
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 7e-11
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 1e-09
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 6e-06
3hy5_A316 Crystal Structure Of Cralbp Length = 316 7e-06
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 104/221 (47%), Gaps = 18/221 (8%)
Query: 255 DTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDKVV------FMHG 308
           D+ LL+FLRAR F V+ A  M +N  +WR ++G D +L +D   D   ++      + H 
Sbjct: 52  DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHK 110
Query: 309 VDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWR----IQF-LEKSIRKLDFSPS 363
            DK+G PV +   G     E+  N  + +E+  K L W     +Q+ L    R       
Sbjct: 111 TDKDGRPVYFEELGAVNLHEM--NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVE 168
Query: 364 GICTIVQINDLKNSPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMI 423
             CTI+   DLK     +   +     +A ++ Q+ YPE + +   IN P+ +    R+ 
Sbjct: 169 TSCTIM---DLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 225
Query: 424 SPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLS 464
            PFL   T SK    G S   E L K I  E +PV++GG S
Sbjct: 226 KPFLDPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGGKS 265
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query580
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 2e-87
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 2e-65
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-63
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 1e-35
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 8e-33
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 7e-11
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-10
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-09
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-07
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 4e-06
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
 Score =  275 bits (705), Expect = 2e-87
 Identities = 78/373 (20%), Positives = 141/373 (37%), Gaps = 42/373 (11%)

Query: 243 IWGIPLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGNDLDK 302
           +  +     +  D  LL++LRAR F ++ +  M++  V +R +  ID ++       + +
Sbjct: 23  VQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQ 82

Query: 303 VV--FMHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDF 360
            +   M G D +G PV Y++ G    K L  +    D      L+ +++  E  +++   
Sbjct: 83  YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAH 137

Query: 361 ----SPSGICTIVQINDLKN-SPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWW 415
                   + TI  I D +        +    A  + + + ++NYPE + R   +  P  
Sbjct: 138 QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKL 197

Query: 416 YLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTD 475
           +     +I PFL++ T+ K +  G     E L K+I+P+QVPV+YGG   + +       
Sbjct: 198 FPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKS 256

Query: 476 PV---------------------TEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSY 513
            +                       V +   S + VE  +     +L W+    G DV +
Sbjct: 257 KINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGF 316

Query: 514 GAEFVP----SAEGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKK 567
           G                  V   ++      P    T    +PG  VL  DN  S    K
Sbjct: 317 GIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED-GTLTCSDPGIYVLRFDNTYSFIHAK 375

Query: 568 KLLYRSKTKPSSD 580
           K+ +  +      
Sbjct: 376 KVNFTVEVLLPDK 388
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Length = 503 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query580
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.08
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.84
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=9.3e-66  Score=551.82  Aligned_cols=333  Identities=24%  Similarity=0.365  Sum_probs=280.5

Q ss_pred             ChhHHHhhcC---CCCCCCCCHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHcCCCCCcccccccc-cce--eEeeeccC
Q 008033          237 PPEKVFIWGI---PLLGDDRSDTILLKFLRARDFKVKDAFTMIKNTVRWRNEFGIDAVLEEDLGND-LDK--VVFMHGVD  310 (580)
Q Consensus       237 ~~~~~~~W~~---PlL~~~~tD~~LLRFLRArkfDVekA~~mLk~~l~WRk~~~iD~i~~~~l~~e-l~k--~~~l~G~D  310 (580)
                      .+++++.|..   |+|+ ..+|.+||||||||+||+++|.+||++++.||+.++++.+.. +..++ +..  ..+++|+|
T Consensus        15 ~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~D   92 (403)
T 1olm_A           15 ALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYD   92 (403)
T ss_dssp             HHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEEC
T ss_pred             HHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccC
Confidence            5678899983   4555 589999999999999999999999999999999999988775 22222 211  23478999


Q ss_pred             CCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCC----CCCeeEEEEEEeCCCCCCCCch--h
Q 008033          311 KEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS----PSGICTIVQINDLKNSPGPAKR--D  384 (580)
Q Consensus       311 k~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~ivvIiDlkG~s~ls~~--~  384 (580)
                      ++||||+|+++|++|++++++..     +..++++++++++|.+++.+..+    +.++.++++|+||+|++ +++.  .
T Consensus        93 k~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l~~~~~~  166 (403)
T 1olm_A           93 LDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-LKHLWKP  166 (403)
T ss_dssp             TTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-GGGGCHH
T ss_pred             CCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCC-HHHHhhH
Confidence            99999999999999999876532     36789999999999998766542    33588999999999986 3221  1


Q ss_pred             HHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccCCCCC
Q 008033          385 LRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLS  464 (580)
Q Consensus       385 l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~eyGG~~  464 (580)
                      ..++++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|.+|||+++||.+|||++
T Consensus       167 ~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~  245 (403)
T 1olm_A          167 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTM  245 (403)
T ss_dssp             HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSB
T ss_pred             HHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCc
Confidence            35678999999999999999999999999999999999999999999999999986 67889999999999999999999


Q ss_pred             CCCC--Ccccc------------------cCCC-ceeeecCCCceEEEeeecC-CceEEEEEEEeecceeeeeEeccCC-
Q 008033          465 REGE--QEFTT------------------TDPV-TEVVVKPASKYTVEIPVTE-RSILVWELRVLGWDVSYGAEFVPSA-  521 (580)
Q Consensus       465 ~~~d--~e~~~------------------~d~~-~~v~Ikag~k~~V~i~V~e-gs~L~WeF~t~~~DI~Fgi~f~~~~-  521 (580)
                      .+.+  +.|..                  .+.. +.++|++|++++|+|+|.. ||+|+|+|+|++|||+|||+|.+.. 
T Consensus       246 ~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~~~  325 (403)
T 1olm_A          246 TDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMG  325 (403)
T ss_dssp             CCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----
T ss_pred             CCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecccc
Confidence            8753  44531                  1123 4599999999999999985 9999999999999999999998532 


Q ss_pred             ---CCCceEEEecceeecCCCcccccCeEEeCcCcEEEEEEEcCCC--CceeEEEEEEecCCC
Q 008033          522 ---EGSYTVIVSKTRKVAPTDEPVICDTFKIGEPGKVVLTIDNQSS--KKKKLLYRSKTKPSS  579 (580)
Q Consensus       522 ---~~~~~~iV~~~~r~~~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~~~~  579 (580)
                         .++....|.|..|+.||.++ ++|+|.|++||+|+|+|||+||  ++|+|+|++++++|+
T Consensus       326 ~~~~~~~~~~v~p~~r~~~~~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~  387 (403)
T 1olm_A          326 ERQRAGEMTEVLPNQRYNSHLVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPD  387 (403)
T ss_dssp             CCCCGGGSEEEEEEEEECTTTSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEECCC
T ss_pred             cccCCCcceEEeeeeeecCcccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeCCc
Confidence               21334556678999999999 7999999999999999999999  999999999999875
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 580
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 1e-36
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 3e-35
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-21
d1olma2119 b.132.1.1 (A:275-393) Supernatant protein factor ( 6e-18
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 4e-14
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 4e-11
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 1e-10
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 1e-36
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 11/189 (5%)

Query: 306 MHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS---- 361
           M G D +G PV Y++ G    K L  +    D      L+ +++  E  +++        
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAHQTTKL 67

Query: 362 PSGICTIVQINDLKN-SPGPAKRDLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFN 420
              + TI  I D +        +    A  + + + ++NYPE + R   +  P  +    
Sbjct: 68  GRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY 127

Query: 421 RMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQYGGLSREGEQEFTTTDPVTEV 480
            +I PFL++ T+ K +  G +   E L K+I+P+QVPV+YGG   + +        +   
Sbjct: 128 NLIKPFLSEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYG 186

Query: 481 VVKPASKYT 489
              P   Y 
Sbjct: 187 GDIPRKYYV 195
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query580
d1olma3199 Supernatant protein factor (SPF), middle domain {H 99.97
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.97
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.94
d1olma2119 Supernatant protein factor (SPF), C-terminal domai 99.92
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.22
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.09
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.05
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-32  Score=263.14  Aligned_cols=161  Identities=26%  Similarity=0.440  Sum_probs=139.0

Q ss_pred             eeccCCCCCeEEEEEccccCccccccccCCChHHHHHHHHHHHHHHHHHHHhhcCC----CCCeeEEEEEEeCCCCCCCC
Q 008033          306 MHGVDKEGHPVCYNVFGEFQNKELYHNNFSDDEKRTKFLKWRIQFLEKSIRKLDFS----PSGICTIVQINDLKNSPGPA  381 (580)
Q Consensus       306 l~G~Dk~GrPV~~~~~g~~d~k~l~~~t~~d~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~ivvIiDlkG~s~ls  381 (580)
                      +||+|++||||+|+++|++|++++++..     ..++++++.++.+|.+++.+..+    +.+++++++|+||+|++..+
T Consensus        13 ~~G~Dk~Grpv~~~r~g~~d~~~l~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~   87 (199)
T d1olma3          13 MCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKH   87 (199)
T ss_dssp             EEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGG
T ss_pred             cccCCCCCCEEEEEecccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhh
Confidence            7999999999999999999999987643     35789999999999998765432    45678999999999976211


Q ss_pred             ch-hHHHHHHHHHHhccccCceeeeeEEEEeCChhHHHHHHhhcccCCccccceEEEeCCCcchhhhhcccCCCCccccC
Q 008033          382 KR-DLRIATNQAVHLLQDNYPEFVARQVFINVPWWYLAFNRMISPFLTQRTKSKFVFSGPSKSAETLFKYIAPEQVPVQY  460 (580)
Q Consensus       382 ~~-~l~~~lK~il~llqd~YPErL~ki~IINaP~~f~~iw~lIKpFL~~kTr~KI~~~~~~~~~e~L~k~Id~d~LP~ey  460 (580)
                      +. ...++++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+++ ++.+.|.++|++++||.+|
T Consensus        88 ~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~-~~~~~L~~~i~~~~lP~~y  166 (199)
T d1olma3          88 LWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEY  166 (199)
T ss_dssp             GCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGG
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC-CCHHHHHHhCCHhhCCHHh
Confidence            21 135789999999999999999999999999999999999999999999999999986 5788999999999999999


Q ss_pred             CCCCCCCC--Cccc
Q 008033          461 GGLSREGE--QEFT  472 (580)
Q Consensus       461 GG~~~~~d--~e~~  472 (580)
                      ||+|++++  +.|.
T Consensus       167 GGt~~~~~~~~~~~  180 (199)
T d1olma3         167 GGTMTDPDGNPKCK  180 (199)
T ss_dssp             TSSBCCTTCCTTCT
T ss_pred             CCCCCCCCCChhhh
Confidence            99998764  4453
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure