Citrus Sinensis ID: 008058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEcccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEcccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEEEcccccEEEccccEEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEcccEEEEEEcccccccccccccEEEEEcccccccccccccEEEEEEEEEcccccEEEEEccccEEEEEEccccEEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEccccccEEEEEccccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEccccccccccccccccccccHHcccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccHHHHHHHcccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAStettslygnrlerehlsvdYTCMKWLSvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLkwrlsdchpggvsaisfathgsciysagadgmvceidpltgsllgkfrastkgiscmavsSDGKMLATAAGqlktfncsdhkkmqkfsghpgavrfmtfsdngkYVLSSAVGERYIALWRTdgvkkqsascvlamehpavfmdcrcidnggvddaGLYVLAISETGVCYIWYGQNIEELRNTKATKILsssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNsgedinlncsqdgvllpmsqsllkskrgryVQNRVTALDranaedavlplpkildsydkknrhqnlssdldevmTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSlgilsnkddllsnSALEatlfngidfetnipvKKMRATILSLSPTNACKLLEVLVDLWQsrsykgknILQWIYFILVNhghhllsqeslTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Flexible Loop (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIastettslygnrlerehlsvdYTCMKWlsvdrkkkrkLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSssedvnsksQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQsllkskrgrYVQNRVTaldranaedavlplpkildsydkknrhqnlssdldevmtDVVDSESQAKfmeikddkveveadSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Low Complexity Region (SEG)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDrkkkrklgssllvlgtgggdvlalavSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered region (IsUnstruct)
*******DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR***********************AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK*KRGRYVQNRVTALDRANAEDAVLPLPKIL************************************************VCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFL*
Disordered Region (DISOPRED)
***SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL***********KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM**********************ANAEDAVLPL*****************************************************CM********************ALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered Region (DISEMBL)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL**************TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Disordered Region (DISPRO)
****NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKN*******DLDEV*****DSE*********************VCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
Q15061	677	WD repeat-containing prot	yes	no	0.846	0.723	0.220	2e-20
Q6ZQL4	677	WD repeat-containing prot	yes	no	0.849	0.726	0.227	1e-19
Q8YV57	1683	Uncharacterized WD repeat	yes	no	0.374	0.128	0.249	2e-09
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.267	0.235	0.273	5e-09
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.267	0.236	0.273	5e-09
Q5ZIU8	657	Katanin p80 WD40 repeat-c	no	no	0.297	0.261	0.270	2e-08
A0CH87	403	Lissencephaly-1 homolog 2	N/A	no	0.278	0.399	0.248	2e-07
Q8TC44	478	POC1 centriolar protein h	no	no	0.193	0.234	0.295	2e-07
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.302	0.267	0.270	3e-07
D3ZW91	477	POC1 centriolar protein h	no	no	0.376	0.457	0.236	6e-07

>sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 133/602 (22%), Positives = 241/602 (40%), Gaps = 112/602 (18%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D  +++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWLSV-------DRKKKRK---LGSS----LLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W           ++KKRK   +G S    LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E +  T  +  K++     +S + +S DGKML 
Sbjct: 125 HDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGER 222
           +A   +K +     +  + F+GH   V  + F+               G Y LS AV +R
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDR 244

Query: 223 YIALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG 281
            + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++  
Sbjct: 245 LLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-- 299

Query: 282 QNIEELRNTKATKILSSSEDVN----SKSQKSATA--AIFAAKLQDIVKPASVHTFVAYG 335
              E + N    K L+S+  +      K +KS      I AA          +   + YG
Sbjct: 300 ---EHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCS----DKMSLLLVYG 352

Query: 336 LLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAV 395
              +P+ +++ +NS E                  L++     +     TA+ +       
Sbjct: 353 SWFQPTIERVALNSREP--------------HMCLVRDISNCWAPKVETAITKV------ 392

Query: 396 LPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADS--QTVCM 453
                         R   ++S+   ++  +    +  K    + ++VE +  S    V +
Sbjct: 393 --------------RTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSI 438

Query: 454 EDRLRSLGILSN---KDDLLSNSALEATLFNGI---DFETNIPVKKMR------ATILSL 501
           E+RL ++ I ++   K+DL +NS     L  G+   DFE    V + R       T+L +
Sbjct: 439 EERLGAMDIDTHKKGKEDLQTNS-FPVLLTQGLESNDFEMLNKVLQTRNVNLIKKTVLRM 497

Query: 502 SPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKK 561
                  LL+ L    Q        ++QW+  +L  H  +L +   L P L +LY++ + 
Sbjct: 498 PLHTIIPLLQELTKRLQGHPNSAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMES 557

Query: 562 KL 563
           ++
Sbjct: 558 RV 559

Homo sapiens (taxid: 9606)

>sp|Q6ZQL4|WDR43_MOUSE WD repeat-containing protein 43 OS=Mus musculus GN=Wdr43 PE=1 SV=2

 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 136/598 (22%), Positives = 240/598 (40%), Gaps = 106/598 (17%)

Query: 12  SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTC 70
           +FSP +  YFA+ S D ++++W+T   ++  E+   A               HLS   TC
Sbjct: 20  AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSA---------------HLSGTCTC 64

Query: 71  MKWL--------SVDRKKKR------KLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDC 115
           + W         S  RKK++      K  + LL LGT  G +L  +   G+L  +L S  
Sbjct: 65  LAWAPARLQAKESHQRKKRKSEVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGG 124

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H   V+ I +     C+YS   D  + E    T  +  K++     +S + +S DGKML 
Sbjct: 125 HENRVNCIQWHQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLL 184

Query: 176 TAAGQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDN---------GKYVLSSAVGERY 223
           +A   +K +     +  + F+GH   V   RF T   N         G Y LS AV +R 
Sbjct: 185 SAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRL 244

Query: 224 IALWRTDGV-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ 282
           + +W+     K++SA     +    V++D    +N    +  + +  +   G  +++   
Sbjct: 245 LNVWQVRSENKEKSAVMSFTVTDEPVYVDLTLSEN---KEEPVKLAVVCRDGQVHLF--- 298

Query: 283 NIEELRNTKATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL 338
             E + N    K L+S+  +      K +K     I        +   S+   + YG   
Sbjct: 299 --EHILNGHCKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWF 354

Query: 339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVL 396
           +P+ +++ +NS +D ++   +D          + +     V+  +T +     N+E  VL
Sbjct: 355 QPTIERVALNS-KDTHICLERD----------ISNCWAPTVETAITKVKTPVMNSEAKVL 403

Query: 397 PLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDR 456
            +P I   +                   +    +Q K  E K      EA      +E+R
Sbjct: 404 -VPGIPGHH-----------------APIKLPPAQPKEAENKRKLGSTEA-----TIEER 440

Query: 457 LRSLGI--LSNKDDLLSNSALEATLFNGI---DFE------TNIPVKKMRATILSLSPTN 505
           L ++ +     KDDL +NS     L  G+   DFE          V  ++ T+L +    
Sbjct: 441 LGAMDLDRKGRKDDLQTNS-FAVLLTQGLESNDFEILNKVLQTKNVNLIKRTVLRIPLRV 499

Query: 506 ACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
              LL+ L    Q        ++QW+  +L  H  +L +   L   L +LY++ + ++
Sbjct: 500 VIPLLQELTKRLQGHPNSAALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRV 557

Mus musculus (taxid: 10090)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)

Query: 12   SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            SF+P  D  A  + D  +KIW    G+         + +T   + N + + + S D   +
Sbjct: 1411 SFTPQGDLIASANADKTVKIWRVRDGK---------ALKTLIGHDNEVNKVNFSPDGKTL 1461

Query: 72   KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
               S  R    KL +                VS G+ K  L   H   V  +SF+  G  
Sbjct: 1462 A--SASRDNTVKLWN----------------VSDGKFKKTLKG-HTDEVFWVSFSPDGKI 1502

Query: 132  IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDH 189
            I SA AD  +   D  +G+L+    A    +  +  + DG MLA+ +    +K +   D 
Sbjct: 1503 IASASADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDG 1562

Query: 190  KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG-----VKKQSASCVLAME 244
              +  FSGH   V   +FS +G+Y+ +SA  ++ + +W+ DG     + +  A  + A+ 
Sbjct: 1563 HLLHTFSGHSNVVYSSSFSPDGRYI-ASASEDKTVKIWQIDGHLLTTLPQHQAGVMSAIF 1621

Query: 245  HPAVFMDCRCIDNGGVD 261
             P    D + + +G +D
Sbjct: 1622 SP----DGKTLISGSLD 1634

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 6/161 (3%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   + ++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKILRTLMG-HKANICSLDFHPYGEFVASGSQDTNIKLWDIR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + ++R  ++ + C+  S DGK LA+AA    +K ++ +  K M +F GH G V  +
Sbjct: 136 RKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP 246
            F  N +Y+L+S   +R I  W  D  K Q  SC+     P
Sbjct: 196 EFHPN-EYLLASGSSDRTIRFW--DLEKFQVVSCIEGEPGP 233

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 9/181 (4%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++  R    H   + ++ F  +GS + S   D  +   D  
Sbjct: 77  LIVAGSQSGSIRVWDLEAAKI-LRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ--LKTFNCSDHKKMQKFSGHPGAVRFM 205
               + K+++ T+ + C+  S DGK LA+AA    +K ++ +  K M +F+GH G V  +
Sbjct: 136 RKGCIFKYKSHTQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVV 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGVDD 262
            F  + +Y+L+S   +R I  W  D  K    SC+     P    +F    C   GG  D
Sbjct: 196 EFHPS-EYLLASGSSDRTIRFW--DLEKFHVVSCIEEEATPVRCILFNPDGCCLYGGFQD 252

Query: 263 A 263
           +
Sbjct: 253 S 253

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Gallus gallus (taxid: 9031)

>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia GN=GSPATT00007594001 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H  GV+ ++F      + SA  DG +   D  +G      +  T  ++C+A    GK + 
Sbjct: 104 HRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGKYIC 163

Query: 176 TAAGQL--KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
           +A+  L  K +   +H  ++   GH  +V  + FSD+G ++L SA  ++ I LW      
Sbjct: 164 SASSDLSIKLWELKNHTCVKTLIGHEHSVSTVQFSDHGDFIL-SASRDKSIKLWEV---- 218

Query: 234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEEL 287
            Q+  C         ++ C    N   D+  +   + S+  + YIW    GQ + +L
Sbjct: 219 -QTGFCKKTFSEHQEWVRCAVFSN---DEKQM--ASCSQDQMIYIWVIDSGQILHQL 269

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Paramecium tetraurelia (taxid: 5888)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
           G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct: 187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query: 178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
           +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct: 247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
           L+V G+  G +    + A ++   L   H   VS++ F  +G  + S   D  +   D  
Sbjct: 77  LIVAGSQSGSLRIWDLEAAKILRTLMG-HKANVSSLDFHPYGEFVASGSLDTNIKLWDVR 135

Query: 148 TGSLLGKFRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKKMQKFSGHPGAVRFM 205
               + +++  T+ + C+  S DGK LA+A+    +K ++ +  K M + S H G V  +
Sbjct: 136 RKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNII 195

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFM--DCRCIDNGGVD 261
            F  N +Y+L+S   +R +  W  D  K Q   C      P  A+    D  CI  GG D
Sbjct: 196 EFHPN-EYLLASGSADRTVRFW--DLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKD 252

Query: 262 DAGLY 266
              +Y
Sbjct: 253 SLRVY 257

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 27/245 (11%)

Query: 7   RDILTS--FSPALDYFAICSGDARIKIWDTLKGQVQTEF-------------AD----IA 47
           +D++TS  FSP  +  A  S D  +++W   +    +EF             AD    + 
Sbjct: 60  KDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVT 119

Query: 48  STETTSLYGNRLEREHLSVD-YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG 106
           ++E  S+    + R+      Y    W+   R  K      L+V  +    +     ++ 
Sbjct: 120 ASEDKSIKVWSMYRQRFLYSLYRHTHWV---RCAKFSPDGRLIVSCSEDKTIKIWDTTSK 176

Query: 107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
           Q     SD   G  + + F+ +G+CI SAG+D  V   D     LL  ++  + G++C++
Sbjct: 177 QCVNNFSDS-VGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCGVNCLS 235

Query: 167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI 224
               G  L TA+  G +K  +  + + +    GH G V  ++FS +G+ + +S   +  +
Sbjct: 236 FHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGE-LFTSGGADAQV 294

Query: 225 ALWRT 229
            +WRT
Sbjct: 295 LVWRT 299

Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Required for ciliogenesis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
313184296	629	putative transducin family protein / WD-	0.968	0.891	0.669	0.0
359477163	628	PREDICTED: WD repeat-containing protein	0.967	0.891	0.662	0.0
224110316	617	predicted protein [Populus trichocarpa]	0.937	0.880	0.656	0.0
255551877	586	nucleotide binding protein, putative [Ri	0.946	0.935	0.641	0.0
449464758	570	PREDICTED: uncharacterized protein LOC10	0.974	0.989	0.608	0.0
449531051	547	PREDICTED: uncharacterized LOC101213788,	0.944	1.0	0.624	0.0
356521817	626	PREDICTED: uncharacterized protein LOC10	0.953	0.881	0.608	0.0
356564408	626	PREDICTED: uncharacterized protein LOC10	0.953	0.881	0.603	0.0
147853966	692	hypothetical protein VITISV_025726 [Viti	0.967	0.809	0.572	0.0
297807165	615	hypothetical protein ARALYDRAFT_325654 [	0.927	0.873	0.574	0.0

>gi|313184296|emb|CBL94162.1| putative transducin family protein / WD-40 repeat family protein [Malus x domestica]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/562 (66%), Positives = 447/562 (79%), Gaps = 1/562 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRD+LT+FSP+LD FAI SGD RIKIWDT+KGQVQTEF DI ++E TS+Y  R E
Sbjct: 1   MASSNIRDLLTAFSPSLDLFAISSGDGRIKIWDTVKGQVQTEFTDIVASEDTSIYAKR-E 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTCMKW S +RKKKRKLGSS LVLGTGGGDVLAL V+AG LKWR++DCH GGV
Sbjct: 60  RGHLSVDYTCMKWFSSERKKKRKLGSSFLVLGTGGGDVLALDVAAGHLKWRVNDCHAGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           S+ISFA + SC+Y+AGADGM+C+ID LTG+L GKF+ASTK IS M+VSS+G +LATAA Q
Sbjct: 120 SSISFARNTSCLYTAGADGMICQIDSLTGNLSGKFKASTKAISSMSVSSNGNILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FN SDHKK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIA+W  DG KKQSAS V
Sbjct: 180 MKIFNLSDHKKIQKFSGHPGAVRCMIFTEDGKYILSSAVGERYIAVWSIDGGKKQSASVV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           L MEHPA+F+D RCID+G V D GLYVLAISE GVCY W+GQNIEELR+ K TKI  SSE
Sbjct: 240 LKMEHPAIFVDSRCIDSGEVGDVGLYVLAISEVGVCYFWFGQNIEELRSAKPTKISLSSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ S + K A   IFAA +Q I K AS   FVAYG  +KPSFQK+LV+SG DI L+ S D
Sbjct: 300 DILSTTYKGALPTIFAAVIQGIAKAASGQVFVAYGSPVKPSFQKLLVHSGTDIKLSSSHD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           GVLLPMSQSL+KSK+G+ VQNRV ALDRANAE+A+ P+PK+ DS++KK RH  LS   DE
Sbjct: 360 GVLLPMSQSLVKSKKGQNVQNRVIALDRANAEEALHPMPKVFDSHEKKKRHDKLSFGQDE 419

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
            M D+ DS  +A  ++ KDD VE+EAD+  +CMEDRL++LGILS  DD   NS L +  F
Sbjct: 420 EMADLDDSRGRAGLVKSKDDMVELEADTAAICMEDRLKALGILSKVDDHTFNSTLNSATF 479

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID + N+P KKMR  +LSL P++ACKLL VLV  WQ+RS  G N+L WIY ILVNHGH
Sbjct: 480 KGIDLQRNMPHKKMREAVLSLEPSDACKLLGVLVATWQTRSSSGNNVLPWIYSILVNHGH 539

Query: 541 HLLSQESLTPMLSSLYKVRKKK 562
            ++SQ+S T MLSSL KV K +
Sbjct: 540 DIMSQKSETQMLSSLLKVTKSR 561

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477163|ref|XP_002271327.2| PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera] gi|296083309|emb|CBI22945.3| unnamed protein product [Vitis vinifera]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/563 (66%), Positives = 451/563 (80%), Gaps = 3/563 (0%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPGGV
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAIS +T GSCIY+AGADGM+ +ID   G+LLGKFRASTK IS M+VSSDGK+LATAA Q
Sbjct: 120 SAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQSASCV
Sbjct: 180 LKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+  S E
Sbjct: 240 LAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVSVSLE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N SQD
Sbjct: 300 DNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKINISQD 359

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + D DE
Sbjct: 360 GILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNIDPDE 418

Query: 421 VMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATL 479
           +M  D+++  SQ K +E KD    VEA ++T C+E++LRSLG+L NKDDL SNS L +  
Sbjct: 419 IMADDLMNVRSQNKAVESKDGLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSMLNSRK 478

Query: 480 FNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHG 539
           F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY ILVNH 
Sbjct: 479 FKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTILVNHS 538

Query: 540 HHLLSQESLTPMLSSLYKVRKKK 562
            H++SQE +T +L SL++  K +
Sbjct: 539 QHIVSQEPVTQLLDSLHQSTKSR 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110316|ref|XP_002315482.1| predicted protein [Populus trichocarpa] gi|222864522|gb|EEF01653.1| predicted protein [Populus trichocarpa]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/559 (65%), Positives = 440/559 (78%), Gaps = 16/559 (2%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
           D+LT+FSP+LDY AI SGD RIKIWDTLKGQVQTEFADI S+E    +  + ER HLSVD
Sbjct: 10  DLLTAFSPSLDYLAISSGDGRIKIWDTLKGQVQTEFADITSSEGD--FYAKPERGHLSVD 67

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           Y CMKWLS+D+KKKRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGVSA+SF+T
Sbjct: 68  YKCMKWLSLDKKKKRKLGSSLLVLGTGSGDVLALDVSAGQLKWSVSDCHPGGVSAVSFST 127

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCS 187
             SCIY++GADGM+C+ DP TG+ LGKFRASTK ISCM+VSSDGK+LATAA QLK FNCS
Sbjct: 128 RDSCIYTSGADGMICKTDPQTGNTLGKFRASTKAISCMSVSSDGKILATAAAQLKIFNCS 187

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA 247
           DHKKMQKFSGHPGAVR M F+D+GKY+LSSAVGERY+ALWR DG K+QSASCVLAMEHPA
Sbjct: 188 DHKKMQKFSGHPGAVRSMVFTDDGKYILSSAVGERYVALWRIDGGKRQSASCVLAMEHPA 247

Query: 248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ 307
           VF+DC+C +N GVDDAGLYVLAISETGVCY W G+N+EELRN+K TK+L S E+   K+ 
Sbjct: 248 VFIDCKCFENEGVDDAGLYVLAISETGVCYTWCGKNVEELRNSKPTKVLLSYEEF-PKNH 306

Query: 308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS 367
           K A   + AAKLQ   KP + + F+AYGLL+KPSFQKIL++ G DI LN SQDGVLLP+S
Sbjct: 307 KGALPTVLAAKLQGTAKPTAANVFIAYGLLVKPSFQKILMHPGTDIKLNSSQDGVLLPLS 366

Query: 368 QSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVD 427
           QSL  +K+ R +QNRVTALDRAN EDA+LPLPK+ D ++KK R+ N+  D DEVM +  +
Sbjct: 367 QSLSNTKKARDLQNRVTALDRANVEDALLPLPKVYDLHEKKMRNMNI-VDHDEVMEESAE 425

Query: 428 SESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGIDFET 487
           S+            V VE D+ T  ME +LR L IL +KDD + +  L++    GI+ E 
Sbjct: 426 SKD-----------VMVEVDAVTTSMEKQLRLLNILGSKDDGILSPTLDSATLKGINLED 474

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQES 547
           NIP+KKMRAT+LS+ P+NA KLLEVLV  WQSRS  GK +L WIY ILVNHG ++++QE 
Sbjct: 475 NIPLKKMRATVLSMEPSNAYKLLEVLVAKWQSRSNSGKCVLPWIYCILVNHGQYIVAQEK 534

Query: 548 L-TPMLSSLYKVRKKKLFA 565
             + ML+SL K+ K +  A
Sbjct: 535 PESQMLNSLLKITKSRAVA 553

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551877|ref|XP_002516984.1| nucleotide binding protein, putative [Ricinus communis] gi|223544072|gb|EEF45598.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/566 (64%), Positives = 444/566 (78%), Gaps = 18/566 (3%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M SSNIRDILT+FSP+LDYFAI SGD R+KIWDT+KGQ+QTEFADI S+     Y  + E
Sbjct: 1   MVSSNIRDILTAFSPSLDYFAISSGDGRVKIWDTVKGQLQTEFADITSSNNADFY-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLS+DYTCMKWLS+DRK+KRKLGSSLLVLGTG GDVLAL VSAGQLKW +SDCHPGGV
Sbjct: 60  RGHLSIDYTCMKWLSLDRKRKRKLGSSLLVLGTGSGDVLALDVSAGQLKWTVSDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           SAISF+T  SCIY+AGADGM C++DP TG++LGKFRASTK IS ++VS DGK+LATAA Q
Sbjct: 120 SAISFSTSDSCIYTAGADGMCCKLDPQTGNMLGKFRASTKAISSVSVSPDGKILATAAAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKT N SD+KK+QKFSGHPGAVR M F+++GKY+LSSAVGERYIALWRTDGVKKQ+ASCV
Sbjct: 180 LKTINLSDNKKIQKFSGHPGAVRAMIFTEDGKYILSSAVGERYIALWRTDGVKKQTASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPAVF+D +C++N GVDDAGL V+AISETGVCY W GQN+EELR  K TKI+  SE
Sbjct: 240 LAMEHPAVFLDSKCLENKGVDDAGLCVMAISETGVCYTWCGQNVEELRIAKPTKIVLFSE 299

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D  SK+QK     IFAAKLQ   KP + H F+A GLL+KP FQKI+V+SG D+NL+ SQD
Sbjct: 300 D--SKNQKGGLRTIFAAKLQGTAKPMAAHVFIACGLLVKPLFQKIVVHSGTDMNLDISQD 357

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLPM++ +LKSK+G  VQNRVTALDRAN EDA LP+ K+ D ++K+ R + ++ + DE
Sbjct: 358 GILLPMNRPILKSKKGIDVQNRVTALDRANVEDASLPISKVSDFHEKRMRDKTVNIETDE 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VM  ++D+ SQ + +E      + E D+ T  ME +LR L ILS+K D        + + 
Sbjct: 418 VMVGLMDARSQPESVE------DREVDAVTTSMEKQLRLLEILSSKGD--------SMIL 463

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
             ID E N+P KKMRA +LS+ P+NA KLLEVLV  WQSRS  GK +L W+Y ILVNHGH
Sbjct: 464 GSIDLEANVPQKKMRAAVLSMEPSNASKLLEVLVAKWQSRSCSGKYVLPWMYCILVNHGH 523

Query: 541 HLLSQESL-TPMLSSLYKVRKKKLFA 565
           H+++Q+   T ML+SL ++ K +  A
Sbjct: 524 HIMAQDKPETQMLNSLLEITKSRGVA 549

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464758|ref|XP_004150096.1| PREDICTED: uncharacterized protein LOC101213788 [Cucumis sativus]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/578 (60%), Positives = 441/578 (76%), Gaps = 14/578 (2%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYKVRKKKLFASAFTCFILLYLFL 578
           H+LSQE    ML SL+    K+  + A T  +   L L
Sbjct: 531 HILSQEQSAQMLDSLF----KQFVSVALTVVVTFLLSL 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531051|ref|XP_004172501.1| PREDICTED: uncharacterized LOC101213788, partial [Cucumis sativus]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/557 (62%), Positives = 434/557 (77%), Gaps = 10/557 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LTSFSP L +FAI SGD RIKIWDTLKGQ+QTEFAD  ++++TS+   + E
Sbjct: 1   MGFSNIRDLLTSFSPDLHFFAISSGDGRIKIWDTLKGQIQTEFADFFTSDSTSIL-TKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDY CMKWLS+++K+KRK    LL+LGTG GDVLAL V+AG+LKW++SDCHPGGV
Sbjct: 60  KGHLSVDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           ++ISF THGSCIY+AGADGM+CEI+ LTG+LL KF+ASTK ISC++VS DGK++ATAA Q
Sbjct: 120 ASISFPTHGSCIYTAGADGMLCEINSLTGNLLRKFKASTKAISCISVSPDGKIIATAASQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           +K FNCS+HKK+QKFSGHPGAVR M F+++G+Y+LSSAVGERYI +W  DG K+QSASCV
Sbjct: 180 VKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWSVDGGKEQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LAMEHPA+F+D RC ++GG D+  LY+LAISE G CY+WYGQN+EELR  K TKIL S  
Sbjct: 240 LAMEHPAIFVDSRCSNDGG-DETALYILAISEIGACYLWYGQNLEELRTAKPTKILMSGN 298

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D+ SKS+K A  AI+AAKLQ + K  S   F+A+GLL+KPSFQ +LV SG DINLN S +
Sbjct: 299 DIFSKSKKRAIPAIYAAKLQGVPKSGSGQVFLAHGLLVKPSFQSVLVQSGTDINLNSSNE 358

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP SQS+ KSK+G  VQ  V ALDRANAEDA+ P+PKI DS +K   +Q+L  D  +
Sbjct: 359 GILLP-SQSIGKSKKGLDVQGGVVALDRANAEDALRPIPKIFDSQEKSTLYQDLQVDRSD 417

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
           VMT +VDS S+       +D V V+ DS  VCMED+LRSLGIL N DD +  S L+  + 
Sbjct: 418 VMTQLVDSGSRL------EDDVGVK-DSAAVCMEDQLRSLGILHNTDDHMLESILKLAIS 470

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
            GID E NI  KK+R  +LSL+P +A KLL  LV++WQSR + GKN+L WIY +L+NH  
Sbjct: 471 KGIDLEANISQKKLREAVLSLAPGDAYKLLGNLVNIWQSRLHCGKNVLPWIYSLLLNHSQ 530

Query: 541 HLLSQESLTPMLSSLYK 557
           H+LSQE    ML SL+K
Sbjct: 531 HILSQEQSAQMLDSLFK 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521817|ref|XP_003529547.1| PREDICTED: uncharacterized protein LOC100815458 [Glycine max]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/560 (60%), Positives = 427/560 (76%), Gaps = 8/560 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++R ILT+F+P+LD+FAI +GD R+KIWDTLKGQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLKGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S ++K+KRK  SSLLVLGTGGGDVLAL V++ QL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFEKKRKRKHISSLLVLGTGGGDVLALDVASAQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AG DGMVC ID +TG+LL KF+ASTK +SCM+VS DG  LATAA
Sbjct: 121 GVRAIASSANVSSIYTAGVDGMVCVIDFMTGNLLEKFKASTKPVSCMSVSPDGNTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GKYVLSSAVGERY+A+WR DG KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMLFTEDGKYVLSSAVGERYVAVWRIDGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+G  D+AG+ VLAISE G+CY+W+G +IEELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSGEHDEAGICVLAISEIGICYLWFGNSIEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            ED+ S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDMPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL+K K+G   Q   TALDRANAEDA+LP+PK+ DS++K+   QN    L
Sbjct: 361 HDGVLLPMSQSLVKYKKGTNAQT-ATALDRANAEDALLPIPKVFDSHEKEKAFQN---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D     S+   +EI+DD  + E D   +CMEDR+RSLG++S++ D  SN  L   
Sbjct: 417 DKDVIDDFHRSSKDDSVEIEDDMAQSEID--VICMEDRMRSLGMISSESDYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  IPVKK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATIPVKKIRAAVLSMKSTKAWKLLEVLLAAWKSRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV 558
             + + ++ +T  L+SL K+
Sbjct: 535 DLNHIPRQYVTCTLNSLDKI 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564408|ref|XP_003550446.1| PREDICTED: uncharacterized protein LOC100784148 [Glycine max]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/560 (60%), Positives = 429/560 (76%), Gaps = 8/560 (1%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETT--SLYGNR 58
           M S+++RDILT+F+P+LD+FAI +GD R+KIWDTL+GQV TEFADI ST +T  +L+   
Sbjct: 1   MASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKS 60

Query: 59  LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG 118
               HL++DYTC+KW S D+K+KRK  SSLLVLGTGGGDVLAL +++GQL WRL+DCHPG
Sbjct: 61  SINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPG 120

Query: 119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA 178
           GV AI+ + + S IY+AGADGMVC ID +TG+LL KF+ASTK +SCM+VS DGK LATAA
Sbjct: 121 GVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAA 180

Query: 179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS 238
            QLK FNCS+HKK+QKFSGHPG+VR M F+++GK++LSSAVGERY+A+WR +G KKQSAS
Sbjct: 181 AQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSAS 240

Query: 239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
           CVLAMEHPAVF+D RCID+   D+AG+ VLAISE G+CY+W+G ++EELRN K TKI  S
Sbjct: 241 CVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLS 300

Query: 299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS 358
            EDV S++ K A  AI+AAKLQ I KPAS   F+ YGLL+KPSF+KILV+SG DI LN S
Sbjct: 301 LEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVS 360

Query: 359 QDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDL 418
            DGVLLPMSQSL KSK+G   Q  VTALDRANAEDA+LP+PK+ DS++K+   Q     L
Sbjct: 361 HDGVLLPMSQSLGKSKKGTNAQT-VTALDRANAEDALLPIPKVFDSHEKEKAFQK---SL 416

Query: 419 DEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEAT 478
           D+ + D +   S+   +E++DD  + E D   +CMEDR+RSLG++S++    SN  L   
Sbjct: 417 DKDVIDDLHRSSKDDSVEMEDDMAQSEID--VICMEDRMRSLGMISSESVYASNIELCCK 474

Query: 479 LFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH 538
           L  GID E  +P+KK+RA +LS+  T A KLLEVL+  W+SRS  GK IL WIY ILVNH
Sbjct: 475 LLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNH 534

Query: 539 GHHLLSQESLTPMLSSLYKV 558
               + Q+ +T  L+SL K+
Sbjct: 535 DLSGIPQQYVTRTLNSLDKI 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853966|emb|CAN79552.1| hypothetical protein VITISV_025726 [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/627 (57%), Positives = 438/627 (69%), Gaps = 67/627 (10%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           MG SNIRD+LT+FSP+LD+FAI SGD RIKIWDTLKGQVQTEFADI ST+TT+LY ++ E
Sbjct: 1   MGPSNIRDLLTTFSPSLDFFAISSGDGRIKIWDTLKGQVQTEFADIISTDTTNLY-SKPE 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           R HLSVDYTC+KWLS+D KKKRKL  SLLVLGTG GDVLAL VSAG+LKWR+ DCHPG V
Sbjct: 60  RGHLSVDYTCLKWLSLDSKKKRKLRCSLLVLGTGSGDVLALDVSAGELKWRIGDCHPGRV 119

Query: 121 --------SAISFATHGSCIY---------------SAGADG--MVCEIDPLTGSLLGKF 155
                     I+     S +Y               S   +G   V  +  L  S++GK+
Sbjct: 120 KFWKDKWCKNIALCDSFSSLYALTTSKEAWLVELWDSTSVEGGWTVGVLGSLGPSMIGKW 179

Query: 156 R---------------------------------------ASTKGISCMAVSSDGKMLAT 176
           R                                       ASTK IS M+VSSDGK+LAT
Sbjct: 180 RRGVSAISCSTDGSCIYAAGADGMISKIDSSAGNLLGKFRASTKAISSMSVSSDGKVLAT 239

Query: 177 AAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS 236
           AA QLK  N SDHKK+QKFSGHPGAVR M F+D+G+Y+LSSA+GERYIA+WR DG KKQS
Sbjct: 240 AAAQLKILNSSDHKKIQKFSGHPGAVRCMIFTDDGEYILSSAIGERYIAVWRIDGSKKQS 299

Query: 237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL 296
           ASCVLAMEHPAVF+D RCIDNG  D +GLYVLAISE GVCY WY +N+E+LRNTK TK+ 
Sbjct: 300 ASCVLAMEHPAVFLDSRCIDNGDTDKSGLYVLAISEIGVCYFWYAKNMEDLRNTKPTKVS 359

Query: 297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN 356
            S ED  SK+ K +   IFAAKLQ +VKPAS   FVAYG L+KPSFQK++V+SG DI +N
Sbjct: 360 VSLEDNFSKNHKGSLPTIFAAKLQGVVKPASGDVFVAYGSLVKPSFQKVIVHSGTDIKIN 419

Query: 357 CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS 416
            SQDG+LLPM QS  KSK+G  V++ VTALDRANAE+A+LP+PKI D ++K  R+QN + 
Sbjct: 420 ISQDGILLPMDQS-HKSKKGLGVKDGVTALDRANAEEALLPIPKIFDFHEKNKRYQNSNI 478

Query: 417 DLDEVMT-DVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSAL 475
           D DE+M  D+++  SQ K +E KDD   VEA ++T C+E++LRSLG+L NKDDL SNS L
Sbjct: 479 DPDEIMADDLMNVRSQNKAVESKDDLESVEASNETSCLEEQLRSLGLLDNKDDLTSNSML 538

Query: 476 EATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFIL 535
            +T F GI  E N+P KKMRA + S+ P +A +LL+VLV +WQSRS  G  +L WIY IL
Sbjct: 539 NSTKFKGISLEENMPPKKMRAAVSSIIPGDAYELLKVLVTMWQSRSCSGNYVLPWIYTIL 598

Query: 536 VNHGHHLLSQESLTPMLSSLYKVRKKK 562
           VNH  H++SQE +  +L SL+   K +
Sbjct: 599 VNHSQHIVSQEPVIQLLDSLHLSTKSR 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807165|ref|XP_002871466.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata] gi|297317303|gb|EFH47725.1| hypothetical protein ARALYDRAFT_325654 [Arabidopsis lyrata subsp. lyrata]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/562 (57%), Positives = 427/562 (75%), Gaps = 25/562 (4%)

Query: 1   MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
           M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct: 1   MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query: 61  REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV 120
           + HLSVDYTCMKWLS+++KKKRKLG+S+LVLGTGGGDVLAL V++GQLKWR+SDCHPGGV
Sbjct: 60  KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query: 121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
           +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct: 120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASAQ 179

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
           LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+T+G KKQSASCV
Sbjct: 180 LKTFNCSDLKKIQKFTGHPGGVRCVAFTEDGKYVLSSAVGERYIAVWKTNGAKKQSASCV 239

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
           LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct: 240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query: 301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
           D + K  K +   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct: 296 DSSLKPHKGSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGTDLVLNASKD 355

Query: 361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
           G+LLP++QS+ KS +G+ VQN+VT LDRA+AEDA+LP+ ++ D ++KK+  Q  SSD D 
Sbjct: 356 GILLPITQSVSKSSKGKGVQNKVTTLDRAHAEDALLPIARVADLHEKKSV-QLHSSDKD- 413

Query: 421 VMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLF 480
             TD+VD +SQA  +E             T  MED+LRSLGIL   D+    +   A++ 
Sbjct: 414 --TDMVD-QSQADHVE-------------TFSMEDKLRSLGILGGTDE--QKNVSYASII 455

Query: 481 NGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH 540
           +GID E  +P KK+++ + S+ P++A K LE LV +WQ+R+  G+++L WIY I+VNH H
Sbjct: 456 DGIDLEAYLPPKKLKSAVSSMEPSSAFKTLEALVAMWQTRACGGRHLLPWIYSIMVNHSH 515

Query: 541 HLLSQESLTPMLSSLYKVRKKK 562
           +++SQE    +L++L K+ K +
Sbjct: 516 YIMSQEPKNQLLNTLVKITKSR 537

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:2147972	615	AT5G11240 "AT5G11240" [Arabido	0.746	0.702	0.571	8.1e-131
ZFIN|ZDB-GENE-021231-3	650	wdr43 "WD repeat domain 43" [D	0.559	0.498	0.243	2.4e-18
MGI|MGI:1919765	677	Wdr43 "WD repeat domain 43" [M	0.882	0.754	0.202	1.3e-12
UNIPROTKB|Q15061	677	WDR43 "WD repeat-containing pr	0.882	0.754	0.203	1.6e-12
UNIPROTKB|Q8IU52	348	TUWD12 "POC1 centriolar protei	0.193	0.321	0.295	3.6e-09
UNIPROTKB|G3V1X0	436	POC1B "POC1 centriolar protein	0.193	0.256	0.295	8.6e-09
UNIPROTKB|F1P8S8	478	POC1B "Uncharacterized protein	0.193	0.234	0.295	9e-09
UNIPROTKB|A5PKH9	478	WDR51B "Uncharacterized protei	0.193	0.234	0.295	9e-09
UNIPROTKB|Q8TC44	478	POC1B "POC1 centriolar protein	0.193	0.234	0.295	1.2e-08
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.193	0.235	0.286	3.2e-08

TAIR|locus:2147972 AT5G11240 "AT5G11240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 251/439 (57%), Positives = 322/439 (73%)

Query:     1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLE 60
             M   NI+D+LTSFSPALDY A+ +GD RIKIWDT+KGQVQTEFADIASTE T++Y  ++ 
Sbjct:     1 MNLVNIKDVLTSFSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIY-TKVG 59

Query:    61 REHLSVDYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGV 120
             + HLSVDYTCMKWLS++                          ++GQLKWR+SDCHPGGV
Sbjct:    60 KGHLSVDYTCMKWLSLEKKKKRKLGTSVLVLGTGGGDVLALDVASGQLKWRISDCHPGGV 119

Query:   121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQ 180
             +A+S +   SCIYS GADGMVC+IDP +G+L+ KF+ASTK +S + VS DGK+L TA+ Q
Sbjct:   120 NAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTASTQ 179

Query:   181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
             LKTFNCSD KK+QKF+GHPG VR + F+++GKYVLSSAVGERYIA+W+TDG KKQSASCV
Sbjct:   180 LKTFNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQSASCV 239

Query:   241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE 300
             LA+EHP VF+D      G  ++ GLYVLAISE GVCY WYG N+EEL N   TK+  ++ 
Sbjct:   240 LALEHPPVFVDSW----GETNEKGLYVLAISEIGVCYFWYGSNVEELCNATPTKVALATA 295

Query:   301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD 360
             D + K  KS+   IFAAKLQ I+KP S H F+A GLL+KPSFQK+++  G D+ LN S+D
Sbjct:   296 DSSLKPYKSSLPLIFAAKLQGILKPGSAHAFIASGLLVKPSFQKMVLQFGNDLVLNASKD 355

Query:   361 GVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLPLPKILDSYDKKNRHQNLSSDLDE 420
             G+LLP++QS+ KS + + VQN+VT LDRA+AEDA+LP+ ++ D ++KK+   + SSD D 
Sbjct:   356 GILLPITQSVSKSSKRQGVQNKVTTLDRAHAEDALLPIARVADLHEKKSVQLH-SSDKDT 414

Query:   421 VMTDVVDSESQAKF-MEIK 438
              M D   ++    F ME K
Sbjct:   415 YMVDQSHADHVETFSMEDK 433

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

ZFIN|ZDB-GENE-021231-3 wdr43 "WD repeat domain 43" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 86/353 (24%), Positives = 146/353 (41%)

Query:    12 SFSPALDYF-AICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP    F A+C+ D R++IW+T    +Q E+   A +++  T   +G  R  +E   V
Sbjct:    13 AFSPKSHQFLALCAQDGRLRIWNTESKTLQQEYVPSAHLSAACTCVTWGPCRAVQE---V 69

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRLSDCHPGGVSAISFA 126
                  K    D                            G L   L   H G V+++ + 
Sbjct:    70 PQR--KRRKCDAASSAEQSDLLALGTAAGTILIYSTLK-GDLHCTLDGGHSGPVNSVQWH 126

Query:   127 THGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                S +YS   D  + E D  TG +  K++A    IS + +S DGKML +A   +K ++ 
Sbjct:   127 PEDSVLYSGSDDTHIAEWDLKTGKVCCKWKADRSAISSLCISPDGKMLLSAGMTIKMWDL 186

Query:   187 SDHKKMQKFSGHPGAVRFMTFS------DNGKYVLSSAVGERYIALW--RTDGVKKQSAS 238
                +  +KF+GH   V  + F+       NG Y LS AV +R +++W  R+DG  K S  
Sbjct:   187 ETKEVYRKFTGHSTMVTTLCFATTRPPDSNGMYFLSGAVHDRLLSVWQVRSDGKDKNSVV 246

Query:   239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS 298
                  + P   +D   +      D  + +  + + G  +++     E   N +  K LS 
Sbjct:   247 SFTLTDEPQ-HID---LQTSNSKDEAVRLAVVCKDGQLHLF-----EHFLNGQCKKPLSP 297

Query:   299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE 351
             +  +   + K  +  +    L   +     +  +AYG  L+P  +K   N+ E
Sbjct:   298 ACSLQVSTMKGESP-VPVPLLAAALCADRQNLMLAYGHHLQPVMEKTPFNTSE 349

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0001525 "angiogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

MGI|MGI:1919765 Wdr43 "WD repeat domain 43" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 117/579 (20%), Positives = 229/579 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D ++++W+T   ++  E+   A ++ T T   +   RL+ +    
Sbjct:    20 AFSPDSQAYFALASSDGQLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE--- 76

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
              +   K  S                              G+L  +L S  H   V+ I +
Sbjct:    77 SHQRKKRKS--EVTGTKDQADLLALGTAVGSILLYSTVRGELHSKLTSGGHENRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E    T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDNDCLYSCSDDKYIVEWSTQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGH--P-GAVRFMTFSDN---------GKYVLSSAVGERYIALW--RTDG 231
                 +  + F+GH  P  ++RF T   N         G Y LS AV +R + +W  R++ 
Sbjct:   195 LETKEVYRHFTGHATPVSSLRFTTIRPNESQPSDGITGLYFLSGAVHDRLLNVWQVRSEN 254

Query:   232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK 291
              +K +       + P V++D    +N    +  + +  +   G  +++     E + N  
Sbjct:   255 KEKSAVMSFTVTDEP-VYVDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNGH 305

Query:   292 ATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV 347
               K L+S+  +      K +K     I        +   S+   + YG   +P+ +++ +
Sbjct:   306 CKKPLTSNCTIQIATPGKGKKVTPKPIPILAASFCLDKMSL--LLVYGNWFQPTIERVAL 363

Query:   348 NSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTAL-DRANAEDAVLPLPKILDS 404
             NS +D ++   +D      P  ++ +   +   + +    L        A + LP     
Sbjct:   364 NS-KDTHICLERDISNCWAPTVETAITKVKTPVMNSEAKVLVPGIPGHHAPIKLPPAQPK 422

Query:   405 YDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILS 464
               +  R    +    E     +D + + +    KDD   ++ +S  V     L + G+ S
Sbjct:   423 EAENKRKLGSTEATIEERLGAMDLDRKGR----KDD---LQTNSFAV-----LLTQGLES 470

Query:   465 NKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG 524
             N  ++L N  L+           N+ +K+   T+L +       LL+ L    Q      
Sbjct:   471 NDFEIL-NKVLQTK-------NVNL-IKR---TVLRIPLRVVIPLLQELTKRLQGHPNSA 518

Query:   525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
               ++QW+  +L  H  +L +   L   L +LY++ + ++
Sbjct:   519 ALMIQWLKCVLTIHASYLSTLPDLVEQLGTLYQLMESRV 557

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q15061 WDR43 "WD repeat-containing protein 43" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 118/581 (20%), Positives = 230/581 (39%)

Query:    12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGN-RLEREHLSV 66
             +FSP +  YFA+ S D  +++W+T   ++  E+   A ++ T T   +   RL+ +  S 
Sbjct:    20 AFSPHSQAYFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKE-SP 78

Query:    67 DYTCMKWLSVDXXXXXXXXXXXXXXXXXXXXXXXXXXSAGQLKWRL-SDCHPGGVSAISF 125
                  K  +V                             G+L  +L S  H   V+ I +
Sbjct:    79 QRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVK----GELHSKLISGGHDNRVNCIQW 134

Query:   126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN 185
                  C+YS   D  + E +  T  +  K++     +S + +S DGKML +A   +K + 
Sbjct:   135 HQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWV 194

Query:   186 CSDHKKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVGERYIALW--RTD 230
                 +  + F+GH   V  + F+               G Y LS AV +R + +W  R++
Sbjct:   195 LETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSE 254

Query:   231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT 290
               +K +       + P V++D    +N    +  + +  +   G  +++     E + N 
Sbjct:   255 NKEKSAVMSFTVTDEP-VYIDLTLSEN---KEEPVKLAVVCRDGQVHLF-----EHILNG 305

Query:   291 KATKILSSSEDVN----SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKIL 346
                K L+S+  +      K +KS    I            S+   + YG   +P+ +++ 
Sbjct:   306 YCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSDKMSL--LLVYGSWFQPTIERVA 363

Query:   347 VNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRYVQNRVTALDRA--NAEDAVLPLPKIL 402
             +NS E  ++   +D      P  ++ +   R   + +    L         A+ P P   
Sbjct:   364 LNSREP-HMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQT 422

Query:   403 DSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI 462
             +  + K +       ++E +   +D ++  K       K +++ +S  V     L + G+
Sbjct:   423 EQVESKRKSGGNEVSIEERL-GAMDIDTHKK------GKEDLQTNSFPV-----LLTQGL 470

Query:   463 LSNKDDLLSNSALEATLFNGIDFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSY 522
              SN  ++L N  L+           N+ +KK   T+L +       LL+ L    Q    
Sbjct:   471 ESNDFEML-NKVLQTR-------NVNL-IKK---TVLRMPLHTIIPLLQELTKRLQGHPN 518

Query:   523 KGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL 563
                 ++QW+  +L  H  +L +   L P L +LY++ + ++
Sbjct:   519 SAVLMVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRV 559

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q8IU52 TUWD12 "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:    57 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 116

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   117 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 170

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3V1X0 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   145 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 204

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   205 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 258

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1P8S8 POC1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 34/115 (29%), Positives = 59/115 (51%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  + TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + SS   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFSSGGADTQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|A5PKH9 WDR51B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + ++F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFTSGGADAQVLLWRTN 300

GO:0042384 "cilium assembly" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0005814 "centriole" evidence=IEA

UNIPROTKB|Q8TC44 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F   G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G LK  +  + + +    GH G V  ++FS  G+ + +S   +  + LWRT+
Sbjct:   247 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGE-LFASGGADTQVLLWRTN 300

GO:0005813 "centrosome" evidence=IDA

GO:0005814 "centriole" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0005932 "microtubule basal body" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 136 (52.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 33/115 (28%), Positives = 61/115 (53%)

Query:   118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA 177
             G  + + F  +G+CI SAG+D  V   D     LL  ++  + G++C++    G  L TA
Sbjct:   187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246

Query:   178 A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
             +  G +K  +  + + +    GH G V  ++FS +G+ +L+S   +  + +WRT+
Sbjct:   247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGE-LLTSGGADAQVLIWRTN 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	579
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-16
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-12
pfam04003	109	pfam04003, Utp12, Dip2/Utp12 Family	2e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 29/240 (12%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEF---ADIASTETTSLYGNRLEREHLSV--D 67
           FSP     A  SGD  IK+WD   G++                S  G  L     S   D
Sbjct: 17  FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL----ASGSSD 72

Query: 68  YTCMKWLSVDRKKKRKLG------SSLLVLGTGGGDVLALAVSAGQLK-WRLSD------ 114
            T   W     +  R L       SS+     G   +L+ +     +K W +        
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTT 130

Query: 115 --CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
              H   V++++F+  G+ + S+  DG +   D  TG  +      T  ++ +A S DG+
Sbjct: 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190

Query: 173 MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            L +++  G +K ++ S  K +    GH   V  + FS +G   L+S   +  I +W   
Sbjct: 191 KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR 249

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 34/211 (16%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +FSP     +  S D  IK+WD   G+  T                   R H       +
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-----------------RGHTD-WVNSV 141

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHG 129
            +                 + +   D  +    +  G+    L+  H G V++++F+  G
Sbjct: 142 AFSPDGT-----------FVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDG 189

Query: 130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS 187
             + S+ +DG +   D  TG  LG  R    G++ +A S DG +LA+ +  G ++ ++  
Sbjct: 190 EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Query: 188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA 218
             + +Q  SGH  +V  + +S +GK + S +
Sbjct: 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280

Length = 289

>gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family

 Score = 63.4 bits (155), Expect = 2e-12
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 488 NIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQE 546
            IP   +  T+LSL  +   +LLE L +  Q  RS   + +L+W+ F+L  HG +L+S  
Sbjct: 12  KIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLLRIHGKYLVSNP 71

Query: 547 SLTPMLSSLYKVRKKKL 563
           +L P L SL KV ++++
Sbjct: 72  NLLPQLRSLQKVLRRRV 88

This domain is found at the C-terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein the yeast protein is called Utp12 or DIP2. Length = 109

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 85/376 (22%), Positives = 142/376 (37%), Gaps = 39/376 (10%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEF------ADIASTETTSLYGNRLEREHLS 65
           +FSP  +     S D  IK+WD   G+   +       + ++    +S  GN +     S
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 66  VDYTCMKW-LSVDRKKKRKL----GSSLLVLGTGGGDVLALAVSA-GQLK-WRLS----- 113
           +D T   W LS   K  R L     S   +  +  G +LA   S  G +K W L      
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191

Query: 114 ---DCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                H   VS+++F+  G   I S  +DG +   D  TG LL    +        + S 
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251

Query: 170 DGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL 226
           DG +LA+ +  G ++ ++      + +  SGH  +V  + FS +GK + S +  +  + L
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRL 310

Query: 227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW---YGQN 283
           W  +  K  S+  +    H           +G +      V   S+ G   +W    G+ 
Sbjct: 311 WDLETGKLLSS--LTLKGHEGPVSSLSFSPDGSL-----LVSGGSDDGTIRLWDLRTGKP 363

Query: 284 IEELRNTKATKILSSSEDVNSKSQKSA--TAAIFAAKLQDIVKPASVHTFVAYGLLLKPS 341
           ++ L        +S S D    S  S   T  ++      +++    HT     L   P 
Sbjct: 364 LKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423

Query: 342 FQKILVNSGEDINLNC 357
             K L +   D  +  
Sbjct: 424 -GKSLASGSSDNTIRL 438

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 2/104 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
           H GGV+ ++F+  G  + +   DG +   D  TG LL   +  T  +  +A S+DG  LA
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 176 TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           + +    ++ ++    + ++  +GH   V  + FS +G+ + SS
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 3/86 (3%)

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS 208
           L    +  T G++C+A S DGK+LAT +  G +K ++    + ++   GH G VR +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 209 DNGKYVLSSAVGERYIALWRTDGVKK 234
            +G Y+ S +  ++ I LW  +  + 
Sbjct: 61  ADGTYLASGS-SDKTIRLWDLETGEC 85

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 8e-06
 Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 29/218 (13%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
           S +   +++SFSP     A  S D  I++WD              S+   S+  +     
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS----- 293

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
                                 G  L    + G   L    +   L       H G VS+
Sbjct: 294 --------------------PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Query: 123 ISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--AG 179
           +SF+  GS + S G+ DG +   D  TG  L      +  +  ++ S DG+++++    G
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDG 392

Query: 180 QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
            ++ ++ S    ++   GH   V  + FS +GK + S 
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 17/196 (8%)

Query: 103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG- 161
           VS   L   L   H   +++I+F+  G  + S  +DG +   D   G  L K        
Sbjct: 51  VSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110

Query: 162 -ISCMAVSS-DGKMLATAA----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYV 214
            +S +A+SS DG  +  A+    G +K ++ S   K ++   GH  +V  + FS +GK +
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG 274
            S +  +  I LW     K  S    LA     V       D       GL + + S  G
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLS---TLAGHTDPVSSLAFSPDG------GLLIASGSSDG 221

Query: 275 VCYIWYGQNIEELRNT 290
              +W     + LR+T
Sbjct: 222 TIRLWDLSTGKLLRST 237

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG4547	541	consensus WD40 repeat-containing protein [General	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.88
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG1188	376	consensus WD40 repeat protein [General function pr	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG2096	420	consensus WD40 repeat protein [General function pr	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG4227	609	consensus WD40 repeat protein [General function pr	99.78
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.77
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
COG2319	466	FOG: WD40 repeat [General function prediction only	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
PRK11028	330	6-phosphogluconolactonase; Provisional	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.67
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
KOG1963	792	consensus WD40 repeat protein [General function pr	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.63
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.62
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.61
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.61
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
KOG1334	559	consensus WD40 repeat protein [General function pr	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.58
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.57
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.56
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.52
KOG2321	703	consensus WD40 repeat protein [General function pr	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
PF04003	110	Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A la	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.49
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.48
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PRK03629	429	tolB translocation protein TolB; Provisional	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.46
PRK04922	433	tolB translocation protein TolB; Provisional	99.45
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
PRK02889	427	tolB translocation protein TolB; Provisional	99.45
KOG1310	758	consensus WD40 repeat protein [General function pr	99.43
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.43
KOG2139	445	consensus WD40 repeat protein [General function pr	99.43
PRK02889	427	tolB translocation protein TolB; Provisional	99.42
KOG1334	559	consensus WD40 repeat protein [General function pr	99.4
KOG1310	758	consensus WD40 repeat protein [General function pr	99.4
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.35
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.27
PRK00178	430	tolB translocation protein TolB; Provisional	99.26
KOG2315	566	consensus Predicted translation initiation factor	99.25
PRK00178	430	tolB translocation protein TolB; Provisional	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.22
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.22
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.17
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.17
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.14
KOG4547	541	consensus WD40 repeat-containing protein [General	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.1
KOG2315	566	consensus Predicted translation initiation factor	99.1
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.1
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.08
KOG2314	698	consensus Translation initiation factor 3, subunit	99.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.01
KOG2314	698	consensus Translation initiation factor 3, subunit	98.99
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.95
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.91
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.89
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.88
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.83
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.82
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.82
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.82
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.82
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.73
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.69
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.69
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.67
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.67
KOG2695	425	consensus WD40 repeat protein [General function pr	98.61
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.55
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.54
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.5
KOG2695	425	consensus WD40 repeat protein [General function pr	98.47
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.41
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.4
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.39
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.28
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.28
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.27
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.27
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.24
PRK02888	635	nitrous-oxide reductase; Validated	98.17
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.11
PRK02888	635	nitrous-oxide reductase; Validated	98.09
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.09
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.09
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.08
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.05
COG3391	381	Uncharacterized conserved protein [Function unknow	98.02
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.94
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.92
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.9
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.88
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.88
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.86
KOG3621	726	consensus WD40 repeat-containing protein [General	97.85
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.77
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.77
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.76
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.76
PF08625	141	Utp13: Utp13 specific WD40 associated domain; Inte	97.71
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.71
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.71
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.7
COG3391	381	Uncharacterized conserved protein [Function unknow	97.7
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.64
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.52
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.52
KOG3621	726	consensus WD40 repeat-containing protein [General	97.51
PF04192	237	Utp21: Utp21 specific WD40 associated putative dom	97.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.47
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.44
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.43
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.39
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.38
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.36
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.36
PRK13616	591	lipoprotein LpqB; Provisional	97.33
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.24
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.22
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.21
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.17
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.13
KOG2395	644	consensus Protein involved in vacuole import and d	97.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.1
PHA02713	557	hypothetical protein; Provisional	97.06
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.05
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.03
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.94
KOG2395	644	consensus Protein involved in vacuole import and d	96.84
PRK13616	591	lipoprotein LpqB; Provisional	96.72
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.62
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.39
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.25
PHA03098	534	kelch-like protein; Provisional	96.24
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.18
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.16
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.08
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.05
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.04
PHA02713	557	hypothetical protein; Provisional	95.85
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.83
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.78
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.65
PHA02790	480	Kelch-like protein; Provisional	95.61
KOG2444	238	consensus WD40 repeat protein [General function pr	95.47
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.44
PHA03098	534	kelch-like protein; Provisional	95.42
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.24
COG5167	776	VID27 Protein involved in vacuole import and degra	95.22
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.1
KOG2444	238	consensus WD40 repeat protein [General function pr	94.96
PHA02790	480	Kelch-like protein; Provisional	94.93
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.91
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.91
PRK13684	334	Ycf48-like protein; Provisional	94.86
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.77
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.25
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.17
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.02
PRK10115	686	protease 2; Provisional	93.99
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.99
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.94
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.66
PRK10115	686	protease 2; Provisional	93.62
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.54
PF09384	148	UTP15_C: UTP15 C terminal; InterPro: IPR018983 Thi	93.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.26
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.25
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.14
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.03
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.62
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.36
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.29
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.27
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	92.18
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.1
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	91.8
PRK13684	334	Ycf48-like protein; Provisional	91.79
PLN02193	470	nitrile-specifier protein	91.69
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.5
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.34
COG5167	776	VID27 Protein involved in vacuole import and degra	91.23
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.22
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	91.15
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.76
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.09
PLN00033	398	photosystem II stability/assembly factor; Provisio	90.08
PLN02153	341	epithiospecifier protein	89.92
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.36
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.27
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.99
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.94
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	88.73
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.24
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.08
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	86.88
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.83
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.69
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.39
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.35
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.86
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	85.85
KOG2247	615	consensus WD40 repeat-containing protein [General	85.74
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.72
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.45
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	85.26
PF12768	281	Rax2: Cortical protein marker for cell polarity	83.94
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.63
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.62
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.57
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.55
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	83.5
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	81.95
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.85
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	81.04
COG4590	733	ABC-type uncharacterized transport system, permeas	80.88
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.52
KOG2247	615	consensus WD40 repeat-containing protein [General	80.43
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	80.4

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-50  Score=395.90  Aligned_cols=504  Identities=18%  Similarity=0.231  Sum_probs=369.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCC-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +..+|  ..++|+..|+++|.|+.. |++-||++++...+...++|...+.++.|+++                      
T Consensus       306 s~~~I--~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD----------------------  361 (893)
T KOG0291|consen  306 SDQKI--LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD----------------------  361 (893)
T ss_pred             cccee--eEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC----------------------
Confidence            45678  666999999999999864 89999999999998888889888888888888                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +.++++|+.||+|+|||...|-|+.++ ..|++.|+.+.|+..|+.+++.+.||+|+.||+..++..++|.....
T Consensus       362 -----gq~iaTG~eDgKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p  435 (893)
T KOG0291|consen  362 -----GQLIATGAEDGKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP  435 (893)
T ss_pred             -----CcEEEeccCCCcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence                 999999999999999999999999887 57999999999999999999999999999999999999999987654


Q ss_pred             -CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          161 -GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                       ...|++..|.|.++++|+   -.|++|++++|+.+..+.||.+||.++.|+|.+..|++++ +|++|++||+-..... 
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S-WDkTVRiW~if~s~~~-  513 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS-WDKTVRIWDIFSSSGT-  513 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc-ccceEEEEEeeccCce-
Confidence             788999999999999998   4899999999999999999999999999999999999887 9999999999776322 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                         +.++......+ .+.|.     |+|+.|++++.||.|.+||.+.+.++..+.+.+......-  ..+...+...-..
T Consensus       514 ---vEtl~i~sdvl-~vsfr-----PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~--~~D~~ta~~sa~~  582 (893)
T KOG0291|consen  514 ---VETLEIRSDVL-AVSFR-----PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK--ETDRITAENSAKG  582 (893)
T ss_pred             ---eeeEeecccee-EEEEc-----CCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc--ccceeehhhcccC
Confidence               33455554444 45565     9999999999999999999999988877766554333211  0010000000011


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEE----ecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCC
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKI----LVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRAN  390 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~  390 (579)
                      -.+..+.|++||.++++.|...+-|+-.+    .... ...+.+.|-||...     .-+..++.+.+|.  +++ ++..
T Consensus       583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk-fqiS~N~sLdg~~e-----fln~rkmtEfG~~~LiD~-e~~~  655 (893)
T KOG0291|consen  583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK-FQISDNRSLDGVLE-----FLNRRKMTEFGNMDLIDT-EESD  655 (893)
T ss_pred             CceEEEEEcCCCCEEEecCCcccEEEEECchhheeee-EEeccccchhHHHH-----HhccccccccCCcccccc-cccc
Confidence            12334566667777777665554333221    1111 23334455555544     3345566666543  222 1111


Q ss_pred             c---cccccCCccccchhhhhhccccCC----CCcc-ccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCC
Q 008058          391 A---EDAVLPLPKILDSYDKKNRHQNLS----SDLD-EVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGI  462 (579)
Q Consensus       391 ~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~  462 (579)
                      .   .+..+|+.+.++.+.|+.|+..+-    +.+. -.-+..++++..+.++.+.- ..++-+-+.+.|.+.-.+++..
T Consensus       656 ~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~-~FDPf~LD~~vTPe~v~~al~~  734 (893)
T KOG0291|consen  656 LEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTI-LFDPFDLDVDVTPESVREALRE  734 (893)
T ss_pred             ccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCce-EEcccccccccCHHHHHHHHhc
Confidence            1   245799999999888876663110    0000 00022345555555554331 2222333345555555555533


Q ss_pred             CCCCCCCCCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHH
Q 008058          463 LSNKDDLLSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYF  533 (579)
Q Consensus       463 ~~~~~~~~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~  533 (579)
                                ..+..+|+.+|         +++...|.+.|+.++..||..|+.+||++|++.+ .++.+.+++++|+++
T Consensus       735 ----------qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l-~~s~HieF~l~W~~~  803 (893)
T KOG0291|consen  735 ----------QEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFL-ENSPHIEFYLRWLRA  803 (893)
T ss_pred             ----------chHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHH-hcCchHHHHHHHHHH
Confidence                      35677788888         3667789999999999999999999999999644 555568899999999


Q ss_pred             HHHHhcccccCCCC-hhHHHHHHHHHHHHhhhhhh
Q 008058          534 ILVNHGHHLLSQES-LTPMLSSLYKVRKKKLFASA  567 (579)
Q Consensus       534 ll~~h~~~l~s~~~-l~~~l~~l~~~~~~r~~~~~  567 (579)
                      ||.+||.++..... +.++|..|++.|.+..+.+.
T Consensus       804 il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~  838 (893)
T KOG0291|consen  804 ILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLS  838 (893)
T ss_pred             HHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHH
Confidence            99999999988774 56799999999987774433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-47  Score=344.97  Aligned_cols=323  Identities=17%  Similarity=0.216  Sum_probs=278.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  +|++|+|+|.+||+|+.|.++|+||+.+.....+.++|...+.++.|+|+                       
T Consensus       114 H~e~V--l~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD-----------------------  168 (480)
T KOG0271|consen  114 HGEAV--LSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD-----------------------  168 (480)
T ss_pred             CCCcE--EEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCC-----------------------
Confidence            35788  99999999999999999999999999999999999988877776655555                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                          +..|++|+.+|+|++||+.+|+.+.+.+.+|...|++++|.|     ..++|++++.||.|+|||+..++++..+.
T Consensus       169 ----gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls  244 (480)
T KOG0271|consen  169 ----GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS  244 (480)
T ss_pred             ----cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec
Confidence                888999999999999999999999888899999999999976     56789999999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----------cCCCE----------
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----------DNGKY----------  213 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-----------~~~~~----------  213 (579)
                      +|..+|+|+.|-.+ .++++|+  ++|++|+...|.++++++||...|+.++.+           |.+++          
T Consensus       245 gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  245 GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             cCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            99999999999755 4888888  899999999999999999999999999776           33444          


Q ss_pred             ---------------EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          214 ---------------VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       214 ---------------l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                                     |++++ +|.++.+|+....++    ++..+..+...+..+.|+     ||+++||+++.|..|++
T Consensus       324 Al~rY~~~~~~~~erlVSgs-Dd~tlflW~p~~~kk----pi~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkL  393 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGS-DDFTLFLWNPFKSKK----PITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKL  393 (480)
T ss_pred             HHHHHHHhhccCcceeEEec-CCceEEEeccccccc----chhhhhchhhheeeEEEC-----CCccEEEEeecccceee
Confidence                           88887 799999999876543    344566777778888898     99999999999999999


Q ss_pred             EECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ||..+|+.+..+.++...+-... ++.+.+    .+++++.|..++.++..        .+.....+-||..+|.++.|+
T Consensus       394 W~g~tGk~lasfRGHv~~VYqva-wsaDsR----LlVS~SkDsTLKvw~V~--------tkKl~~DLpGh~DEVf~vDws  460 (480)
T KOG0271|consen  394 WDGRTGKFLASFRGHVAAVYQVA-WSADSR----LLVSGSKDSTLKVWDVR--------TKKLKQDLPGHADEVFAVDWS  460 (480)
T ss_pred             eeCCCcchhhhhhhccceeEEEE-eccCcc----EEEEcCCCceEEEEEee--------eeeecccCCCCCceEEEEEec
Confidence            99999999988877655444333 566766    89999999866665422        233344667899999999999


Q ss_pred             CCcceeeccccceeccccee
Q 008058          359 QDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~  378 (579)
                      |||..+ +||+.|+.+++|.
T Consensus       461 pDG~rV-~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 PDGQRV-ASGGKDKVLRLWR  479 (480)
T ss_pred             CCCcee-ecCCCceEEEeec
Confidence            999999 9999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-47  Score=373.03  Aligned_cols=507  Identities=17%  Similarity=0.188  Sum_probs=390.9

Q ss_pred             CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++++||  +.++|+|.|..+|+|+.||.++|||+..+.+.+.|++|++.+..+.|.+...                    
T Consensus       103 ~He~Pv--i~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~--------------------  160 (775)
T KOG0319|consen  103 IHEAPV--ITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN--------------------  160 (775)
T ss_pred             ccCCCe--EEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc--------------------
Confidence            368999  8889999999999999999999999999999999999999999888887610                    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee----
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR----  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----  156 (579)
                           ...|++|..|+.+++||+.+..........|.+.|+++.|.+|+..+++++.|..+.+||+.+.+..+++.    
T Consensus       161 -----~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~  235 (775)
T KOG0319|consen  161 -----RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES  235 (775)
T ss_pred             -----hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh
Confidence                 34689999999999999997655223446799999999999999999999999999999985432211110    


Q ss_pred             --------------------------------------------------------------------------------
Q 008058          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       236 ~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i  315 (775)
T KOG0319|consen  236 LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTI  315 (775)
T ss_pred             eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEE
Confidence                                                                                            


Q ss_pred             -----------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058          157 -----------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (579)
Q Consensus       157 -----------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~  187 (579)
                                                                     +|...|.+++...+|-+|++|+  +++++|.+.
T Consensus       316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~  395 (775)
T KOG0319|consen  316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLN  395 (775)
T ss_pred             ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEec
Confidence                                                           5667777777666788899998  799999774


Q ss_pred             CC----eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEE----eeecCceeeEeEEecCC
Q 008058          188 DH----KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVL----AMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       188 ~~----~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  258 (579)
                      ++    -++....+|.+.|.+++++..+. +|+++| .|+++++|++...+.......+    +...|+..++++..+  
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS-~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia--  472 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS-QDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA--  472 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEec-CCceEEEecCCCcccccccceehhhHHHHhhcccccceEec--
Confidence            43    23556689999999999987665 556655 8999999999884432222222    344677788899998  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCC
Q 008058          259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL  338 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~  338 (579)
                         |+.+.||+||.|.+.+||+++.+..+..+.+++..+.+.. |++..+    .+++++.|+.+++|.        ...
T Consensus       473 ---~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~-Fs~~dq----~laT~SgD~TvKIW~--------is~  536 (775)
T KOG0319|consen  473 ---PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS-FSKNDQ----LLATCSGDKTVKIWS--------IST  536 (775)
T ss_pred             ---CCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-eccccc----eeEeccCCceEEEEE--------ecc
Confidence               9999999999999999999999999999999998888877 788877    899999998777633        456


Q ss_pred             CceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCccccchhhhhhccccCCC
Q 008058          339 KPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLPKILDSYDKKNRHQNLSS  416 (579)
Q Consensus       339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (579)
                      +.|.+++.||+..|..+.|-.+|.+| +|++.||.+|+|++++.  ..+++..  +|+.|+....- .            
T Consensus       537 fSClkT~eGH~~aVlra~F~~~~~ql-iS~~adGliKlWnikt~eC~~tlD~H--~DrvWaL~~~~-~------------  600 (775)
T KOG0319|consen  537 FSCLKTFEGHTSAVLRASFIRNGKQL-ISAGADGLIKLWNIKTNECEMTLDAH--NDRVWALSVSP-L------------  600 (775)
T ss_pred             ceeeeeecCccceeEeeeeeeCCcEE-EeccCCCcEEEEeccchhhhhhhhhc--cceeEEEeecC-c------------
Confidence            78899999999999999999999999 99999999999999754  5566532  35555433321 0            


Q ss_pred             CccccccccccchhhhhhhhccCcccccccCCcCCCHHHHHHhcCCCCCCCCCCCCchhhhhhccce---e----ecccC
Q 008058          417 DLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVCMEDRLRSLGILSNKDDLLSNSALEATLFNGI---D----FETNI  489 (579)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l---~----l~~~~  489 (579)
                      .   .+...-+.+..+.-|++.+++++.++.+.++.-.+|-++|....-.+.+..|.-|+..|..+.   .    +.+.+
T Consensus       601 ~---~~~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r  677 (775)
T KOG0319|consen  601 L---DMFVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRER  677 (775)
T ss_pred             c---ceeEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcC
Confidence            0   011111445567778877766655555444444455555554434555666666666666655   2    33445


Q ss_pred             ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH-hcccccCCCChhHHHHHHHHHHHH---hh--
Q 008058          490 PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN-HGHHLLSQESLTPMLSSLYKVRKK---KL--  563 (579)
Q Consensus       490 ~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~-h~~~l~s~~~l~~~l~~l~~~~~~---r~--  563 (579)
                      +++.+..+|.+|......-||+++. .|++|++++...++.|+.+|.. -...|+..|....+++.|.-..++   |+  
T Consensus       678 ~~e~l~~av~~L~~dq~~~Ll~~~~-~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~g~~~~~e~l~PYtqRHf~Rid~  756 (775)
T KOG0319|consen  678 DPEELGQAVFRLNEDQPEALLQFVV-KWNTNSKTCHVAQRVLYEILKRVDPEELVRWPGSGEVVEALLPYTQRHFRRIDR  756 (775)
T ss_pred             CcHHHHHHHHHhhhhhHHHHHHHHH-HhcCCcchhHHHHHHHHHHHhccChHHhhcccchHHHHHhhhhHHHHHHHHHHH
Confidence            6889999999999999999999999 8999999999999999999985 456688999888888888877664   33  


Q ss_pred             --hhhhhhhcee
Q 008058          564 --FASAFTCFIL  573 (579)
Q Consensus       564 --~~~~~~~~~~  573 (579)
                        +.+++..|..
T Consensus       757 ~~~~~~lLdf~~  768 (775)
T KOG0319|consen  757 LVQDSALLDFTW  768 (775)
T ss_pred             HhhhhHHHHHhh
Confidence              5556666543

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.8e-45  Score=335.05  Aligned_cols=281  Identities=19%  Similarity=0.218  Sum_probs=252.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.||  ..|.||+|++.|||||.+|.++||+..+...++.|.+|...+.                  ++.|.|..     
T Consensus       175 ~rPi--s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~------------------~~~fhP~~-----  229 (459)
T KOG0272|consen  175 TRPI--SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVG------------------AAVFHPVD-----  229 (459)
T ss_pred             CCcc--eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccccee------------------eEEEccCC-----
Confidence            5788  7789999999999999999999999999999999997776555                  44555542     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                        .+..+++|+.||++++|++.+...+..+ .+|...|..++|+|+|++|.+++.|.+-++||+.++..+....+|..+|
T Consensus       230 --~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  230 --SDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             --CccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccc
Confidence              0557999999999999999998887666 6899999999999999999999999999999999999988899999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|||.++++|+  ..-+|||+++|+++..+.+|..+|.++.|+|+|..+++|| .|++++|||++....     +
T Consensus       307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs-~Dnt~kVWDLR~r~~-----l  380 (459)
T KOG0272|consen  307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS-SDNTCKVWDLRMRSE-----L  380 (459)
T ss_pred             ceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC-CCCcEEEeeeccccc-----c
Confidence            9999999999999999  7889999999999999999999999999999999999988 699999999998763     5


Q ss_pred             EeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      +++..+...++-+.|+     | .|.+|++++.|++++||...+...++                               
T Consensus       381 y~ipAH~nlVS~Vk~~-----p~~g~fL~TasyD~t~kiWs~~~~~~~k-------------------------------  424 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYS-----PQEGYFLVTASYDNTVKIWSTRTWSPLK-------------------------------  424 (459)
T ss_pred             eecccccchhhheEec-----ccCCeEEEEcccCcceeeecCCCcccch-------------------------------
Confidence            7888888899999998     6 78999999999999999766554432                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                              .+.||++.|.++..++||+++ +|+|.|+++|+|.
T Consensus       425 ------------------------sLaGHe~kV~s~Dis~d~~~i-~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  425 ------------------------SLAGHEGKVISLDISPDSQAI-ATSSFDRTIKLWR  458 (459)
T ss_pred             ------------------------hhcCCccceEEEEeccCCceE-EEeccCceeeecc
Confidence                                    445899999999999999999 9999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.1e-43  Score=343.12  Aligned_cols=427  Identities=19%  Similarity=0.249  Sum_probs=318.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.||.+  +||.|...+++|+ .+.++||+..+.+|+.++...                    ..-|..+.|.      
T Consensus       373 R~dVRsl--~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--------------------y~l~~~Fvpg------  423 (888)
T KOG0306|consen  373 RSDVRSL--CVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--------------------YILASKFVPG------  423 (888)
T ss_pred             hhheeEE--EeecCceeeeecC-CCcEEEEEccCcceeEEeccc--------------------cEEEEEecCC------
Confidence            4578666  9999988888877 468999999999999988632                    2234444443      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----Ccee-----
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLL-----  152 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~-----  152 (579)
                         +.++++|..+|.+.+||+.....+.++ .+|.+.|++++.+||++.+++||.|.+|++||..-     |...     
T Consensus       424 ---d~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  424 ---DRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             ---CceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence               788999999999999999999887555 58999999999999999999999999999999741     2211     


Q ss_pred             ---eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          153 ---GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       153 ---~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                         ++++ -...|.|+.+||||++|+++-  ++++||-+.+-+...++.||.-||.+|.++||++.+++|| .|++|++|
T Consensus       500 ~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS-ADKnVKiW  577 (888)
T KOG0306|consen  500 KHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS-ADKNVKIW  577 (888)
T ss_pred             ccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc-CCCceEEe
Confidence               1222 346899999999999999998  8999999999999999999999999999999999999988 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      -++-|.+.     ..+-.|...+.++.|-     |....+++++.||.++-||.+..+.+                    
T Consensus       578 GLdFGDCH-----KS~fAHdDSvm~V~F~-----P~~~~FFt~gKD~kvKqWDg~kFe~i--------------------  627 (888)
T KOG0306|consen  578 GLDFGDCH-----KSFFAHDDSVMSVQFL-----PKTHLFFTCGKDGKVKQWDGEKFEEI--------------------  627 (888)
T ss_pred             ccccchhh-----hhhhcccCceeEEEEc-----ccceeEEEecCcceEEeechhhhhhh--------------------
Confidence            99998743     4555566666677777     89999999999999999987555433                    


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeec
Q 008058          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALD  387 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~  387 (579)
                                                         +++.+|..+|++++.+|+|.++ +|+|+|.+|++|+..+..-.++
T Consensus       628 -----------------------------------q~L~~H~~ev~cLav~~~G~~v-vs~shD~sIRlwE~tde~~~lE  671 (888)
T KOG0306|consen  628 -----------------------------------QKLDGHHSEVWCLAVSPNGSFV-VSSSHDKSIRLWERTDEILILE  671 (888)
T ss_pred             -----------------------------------eeeccchheeeeeEEcCCCCeE-EeccCCceeEeeeccCcceeee
Confidence                                               2455888899999999999999 9999999999999865444343


Q ss_pred             cCCccccccCCccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcc--ccccc-------CCcCCCHHHHHH
Q 008058          388 RANAEDAVLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDK--VEVEA-------DSQTVCMEDRLR  458 (579)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~-------~~~~~~~~~~l~  458 (579)
                      +..+.+..       ...                       +....+.|...++  .+.+.       -+....-+..++
T Consensus       672 eekE~ErE-------e~y-----------------------E~l~~~~e~~~~~~~~~g~~~~~skkTieSvk~aE~i~e  721 (888)
T KOG0306|consen  672 EEKEGERE-------EEY-----------------------ETLLASEEVVAGDGSADGDAGVASKKTIESVKSAERILE  721 (888)
T ss_pred             hhhhhhhH-------HHH-----------------------HHhhhhcccccCCCcccccccchhhhhhHHHHHHHHHHH
Confidence            21110000       000                       0000000000000  00000       000011122234


Q ss_pred             hcCCCC----CCCCC-CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCc
Q 008058          459 SLGILS----NKDDL-LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKG  524 (579)
Q Consensus       459 ~l~~~~----~~~~~-~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~  524 (579)
                      ++++..    +..+. ++ .+. .++++|+         +.+..++...++.++.-||++|++.+|+++.+ +..++.+.
T Consensus       722 a~di~~~e~~~~ee~~~g-~P~-npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~-~~q~~~~v  798 (888)
T KOG0306|consen  722 ALDIGREELTQLEEYSPG-HPH-NPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE-CIQRKSKV  798 (888)
T ss_pred             HHHHHHHHHHhHHhhcCC-CCC-cHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH-HHcCCCcc
Confidence            444221    11111 11 122 4666666         34455678899999999999999999999984 55556779


Q ss_pred             chhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh
Q 008058          525 KNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL  563 (579)
Q Consensus       525 ~~~~~wl~~ll~~h~~~l~s~~~l~~~l~~l~~~~~~r~  563 (579)
                      +++++.+.+|++.|.+++.+.++++|.|+.+...++..+
T Consensus       799 eLv~rv~~fL~rih~~~it~~~~~kp~l~~i~s~l~~~v  837 (888)
T KOG0306|consen  799 ELVCRVLFFLLRIHHKQITAHKNMKPLLEKIKSKLREIV  837 (888)
T ss_pred             eeEeeeeeehhhhhhhhhccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-40  Score=301.15  Aligned_cols=274  Identities=20%  Similarity=0.267  Sum_probs=220.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~  164 (579)
                      +..|++|+.|.++++||+.+.....+. ++|...|.|++|+|||+.|++|+.||+|++||..+|+++. .+.+|...|++
T Consensus       127 g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~  205 (480)
T KOG0271|consen  127 GSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITA  205 (480)
T ss_pred             CceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeE
Confidence            888999999999999999999888666 7899999999999999999999999999999999987654 59999999999


Q ss_pred             EEEcc-----CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          165 MAVSS-----DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       165 l~~~p-----~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ++|.|     ..++|++++  |.|+|||+..++++..+.+|+.+|+|+.|--+| ++++++ .|++|++|+...+...  
T Consensus       206 Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS-~DrtIkvw~a~dG~~~--  281 (480)
T KOG0271|consen  206 LAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS-QDRTIKVWRALDGKLC--  281 (480)
T ss_pred             EeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC-CCceEEEEEccchhHH--
Confidence            99976     677899998  999999999999999999999999999997665 677765 8999999999887633  


Q ss_pred             eeEEeeecCceeeEeEEec------CCcccCCCc-------------------------EEEEEEcCCeEEEEECCCce-
Q 008058          238 SCVLAMEHPAVFMDCRCID------NGGVDDAGL-------------------------YVLAISETGVCYIWYGQNIE-  285 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------------------------~l~s~~~dg~i~iwd~~~~~-  285 (579)
                         ..+..+...++.++.+      ...|+|.++                         .+++|++|+++.+|+....+ 
T Consensus       282 ---r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  282 ---RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             ---HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence               2333333333333322      111224343                         59999999999999865543 


Q ss_pred             eecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008058          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .+....++...+.... |+|+++    +|++|+||..+++|+|.        ....+.++.||-..|..++||.|.++| 
T Consensus       359 pi~rmtgHq~lVn~V~-fSPd~r----~IASaSFDkSVkLW~g~--------tGk~lasfRGHv~~VYqvawsaDsRLl-  424 (480)
T KOG0271|consen  359 PITRMTGHQALVNHVS-FSPDGR----YIASASFDKSVKLWDGR--------TGKFLASFRGHVAAVYQVAWSADSRLL-  424 (480)
T ss_pred             chhhhhchhhheeeEE-ECCCcc----EEEEeecccceeeeeCC--------CcchhhhhhhccceeEEEEeccCccEE-
Confidence            3333333333333222 899999    99999999988886632        223344788999999999999999999 


Q ss_pred             ccccceecccceeeee
Q 008058          366 MSQSLLKSKRGRYVQN  381 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~~  381 (579)
                      +|||.|.++|+|++..
T Consensus       425 VS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRT  440 (480)
T ss_pred             EEcCCCceEEEEEeee
Confidence            9999999999999953

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-38  Score=279.46  Aligned_cols=281  Identities=16%  Similarity=0.202  Sum_probs=248.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.|  .++.|++|.++++++|.||.+.|||.-+...++.++-+...+...+|+|.                        
T Consensus        55 ~~Ki--~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS------------------------  108 (343)
T KOG0286|consen   55 LNKI--YAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS------------------------  108 (343)
T ss_pred             ccce--eeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC------------------------
Confidence            3567  67799999999999999999999999999988888877777777777776                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCC--e---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAG--Q---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~--~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                         +++++.|+-|+...||++.+.  +   .+.+.+.+|++-+.|+.|-+|+ .|++++.|.+..+||+++|+.+..|.+
T Consensus       109 ---g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~G  184 (343)
T KOG0286|consen  109 ---GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHG  184 (343)
T ss_pred             ---CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecC
Confidence               899999999999999999854  2   3445568999999999998854 789999999999999999999999999


Q ss_pred             CCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          158 STKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       158 ~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      |.+.|.+++++| +++.+++|+  +..++||++.+.++++|.+|.+.|+++.|.|+|.-|++++ +|++.++||++..+.
T Consensus       185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS-DD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS-DDATCRLYDLRADQE  263 (343)
T ss_pred             CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC-CCceeEEEeecCCcE
Confidence            999999999999 999999998  8999999999999999999999999999999999999987 799999999999875


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      .   .++..+.....+..+.|+     ..|++|++|..|.++.+||.-.++.+                           
T Consensus       264 ~---a~ys~~~~~~gitSv~FS-----~SGRlLfagy~d~~c~vWDtlk~e~v---------------------------  308 (343)
T KOG0286|consen  264 L---AVYSHDSIICGITSVAFS-----KSGRLLFAGYDDFTCNVWDTLKGERV---------------------------  308 (343)
T ss_pred             E---eeeccCcccCCceeEEEc-----ccccEEEeeecCCceeEeeccccceE---------------------------
Confidence            5   555555556667888888     89999999999999999995333221                           


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                  -.+.||++.|.++..+|||.-+ +|||.|.++|+|.
T Consensus       309 ----------------------------g~L~GHeNRvScl~~s~DG~av-~TgSWDs~lriW~  343 (343)
T KOG0286|consen  309 ----------------------------GVLAGHENRVSCLGVSPDGMAV-ATGSWDSTLRIWA  343 (343)
T ss_pred             ----------------------------EEeeccCCeeEEEEECCCCcEE-EecchhHheeecC
Confidence                                        1455899999999999999999 9999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.5e-35  Score=253.53  Aligned_cols=272  Identities=14%  Similarity=0.210  Sum_probs=220.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      -+|+++|.|.+||+|...+|.|..+++...+.++.+...++                           +.. +++.....
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd---------------------------k~~-LAaa~~qh   62 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD---------------------------KKD-LAAAGNQH   62 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC---------------------------cch-hhhccCCe
Confidence            48999999999999999999999999877666666666555                           333 44455678


Q ss_pred             EEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058           98 VLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus        98 i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      |++||+.++.. ....+.+|+..|+++.|..+|+.+++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++
T Consensus        63 vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis  141 (311)
T KOG0315|consen   63 VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELIS  141 (311)
T ss_pred             eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEe
Confidence            99999998765 333447899999999999999999999999999999999877766666 6789999999999999999


Q ss_pred             EC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-ceeEEeee-cCceeeE
Q 008058          177 AA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-ASCVLAME-HPAVFMD  251 (579)
Q Consensus       177 ~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~-~~~~~~~  251 (579)
                      |+  |.|++||+.+..+...+ +.-..+|.++...|||++++.+. ..|..++|++-.....+ ..++..+. |....+.
T Consensus       142 ~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~  220 (311)
T KOG0315|consen  142 GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR  220 (311)
T ss_pred             ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhheecccceEEE
Confidence            98  99999999988666555 34457899999999999998876 68999999997754322 22333344 4444555


Q ss_pred             eEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEE
Q 008058          252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTF  331 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  331 (579)
                      |. ++     ||+++|++++.|.+++||+.++.  +..                                          
T Consensus       221 C~-lS-----Pd~k~lat~ssdktv~iwn~~~~--~kl------------------------------------------  250 (311)
T KOG0315|consen  221 CL-LS-----PDVKYLATCSSDKTVKIWNTDDF--FKL------------------------------------------  250 (311)
T ss_pred             EE-EC-----CCCcEEEeecCCceEEEEecCCc--eee------------------------------------------
Confidence            44 55     99999999999999999987655  110                                          


Q ss_pred             EEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          332 VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       332 ~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                -..+.+|...++.++||.||+|| +++|.|+..++|++.
T Consensus       251 ----------e~~l~gh~rWvWdc~FS~dg~Yl-vTassd~~~rlW~~~  288 (311)
T KOG0315|consen  251 ----------ELVLTGHQRWVWDCAFSADGEYL-VTASSDHTARLWDLS  288 (311)
T ss_pred             ----------EEEeecCCceEEeeeeccCccEE-EecCCCCceeecccc
Confidence                      01455788899999999999999 999999999999985

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=286.12  Aligned_cols=475  Identities=31%  Similarity=0.402  Sum_probs=327.1

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeec-----------cccccc
Q 008058           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-----------DRKKKR   82 (579)
Q Consensus        14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----------~~~~~~   82 (579)
                      +|-+.|+|....||.++||+...++...+|..               ..+++..+++..|.-.           ....+.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p---------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~   66 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP---------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA   66 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeecc---------------chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence            45668999999999999999999999988862               3555666777777521           111222


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      +.+...++.|+..|.|.+|+...|+....+. ..|.++|.++.++.+-..|++++.|+.+..|+..+++.++.+++....
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL  146 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc
Confidence            3357789999999999999999999988876 679999999999999899999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecC-----CCEEEEEecCCCeEEEEEcCC-Cccc
Q 008058          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-----GKYVLSSAVGERYIALWRTDG-VKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~l~s~s~~d~~i~vwd~~~-~~~~  235 (579)
                      +.+++++|||.++++++++|++||+++++.+.+|+||.++|+++.|..+     |.+++++...++-+.+|-+.. .+..
T Consensus       147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk  226 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK  226 (541)
T ss_pred             cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence            9999999999999999999999999999999999999999999999877     788888776778899998876 4444


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                      ...+.+..++.+.......-.    +..+.+.++.+..+.+..|...+...+...++.++.....+  +.+      -++
T Consensus       227 s~~~sl~~~dipv~~ds~~~e----d~~~~l~lAst~~~g~v~~~~~nl~~l~~~~~~kv~~~~~~--~s~------g~~  294 (541)
T KOG4547|consen  227 SLSCSLTVPDIPVTSDSGLLE----DGTIPLVLASTLIPGIVHLKLSNLIILLHKKIVKVNGYNAD--SSK------GFL  294 (541)
T ss_pred             hhheeeccCCCCeEecccccc----ccccceEEeeeccCceeeeccccHHHHhcCccccccceeee--ccc------chh
Confidence            556777777766655544332    11222444444444444444444444444444433322211  111      244


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe-ecCCcceeeccccceecccceeeeeceeeeccCCcccc
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN-CSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDA  394 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~-~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~  394 (579)
                      ++.+...    ..+.++.||....+.++.+......-..+. ....|... +        ++....+...+..       
T Consensus       295 a~~~~~~----~~~~~l~~g~~~~ps~~~vsln~~~~l~l~~R~l~~~~~-~--------~~~~~k~~~rqv~-------  354 (541)
T KOG4547|consen  295 AALFGID----KAHALLAYGSLVNPSFVRVSLNLGQKLHLMDRDLSGSGK-L--------KLVTSKEGKRQVV-------  354 (541)
T ss_pred             hhhcccc----hhhhhhhcccccCchhhhhhhhhcchhhhhhhhccCCcc-c--------ceeeeecccceee-------
Confidence            4444321    135667788777777666654332222211 11111111 1        1111110000000       


Q ss_pred             ccCCccccchhhhhhccccCCCCccccccccccchhhhhhhh--ccCcccccccCCcCCCHHHHHHhcCCCCCCC---CC
Q 008058          395 VLPLPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFME--IKDDKVEVEADSQTVCMEDRLRSLGILSNKD---DL  469 (579)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~  469 (579)
                               ..+.++...                +..+...+  .++....+...+.|..++.|+.++.......   ..
T Consensus       355 ---------~n~~~k~~~----------------~~~~q~~~p~~~~l~v~~~~g~iEv~~earl~~l~i~~~~~~~k~~  409 (541)
T KOG4547|consen  355 ---------LNSVAKLGE----------------AEVIQEEPPLTEDLPVLTKGGDIEVSTEARLSALDINLTSNADKSD  409 (541)
T ss_pred             ---------cchhhhhcc----------------hhhhcccCcchhcchhhhcCCcceeeehhhhhhcccccccccchhh
Confidence                     000000000                00000000  0001111233456778889998887654332   22


Q ss_pred             CCCchhhhhhccce---------eecccCChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcc
Q 008058          470 LSNSALEATLFNGI---------DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGH  540 (579)
Q Consensus       470 ~~~~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~  540 (579)
                      .........+.|+|         .++..++++.|+.|+.|+|++++.+||+.++++|+++++++..+++|++++|..|.+
T Consensus       410 ~~tll~s~~l~Q~L~srd~~~~~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~  489 (541)
T KOG4547|consen  410 ESTLLASVSLNQALSSRDSHILTDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNS  489 (541)
T ss_pred             hhccchhhhhhhhhcccccccchhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccc
Confidence            33445566888888         377888999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCChhHHHHHHHHHHHHhh
Q 008058          541 HLLSQESLTPMLSSLYKVRKKKL  563 (579)
Q Consensus       541 ~l~s~~~l~~~l~~l~~~~~~r~  563 (579)
                      ||+++|+   .++.|++.+++++
T Consensus       490 yl~sv~~---~~~~l~~~~~~~~  509 (541)
T KOG4547|consen  490 YLSSVPD---QLETLSGKMQKDL  509 (541)
T ss_pred             eeecCcc---hhhHHHHHHHHHH
Confidence            9999999   6666777776665

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.8e-36  Score=277.93  Aligned_cols=237  Identities=17%  Similarity=0.215  Sum_probs=212.9

Q ss_pred             CCcccceEEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|  .++.|+|.  +.-+|+|+.||++++|++.+...+..+.+|...+..+.|+|+                      
T Consensus       217 ~~~v--~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs----------------------  272 (459)
T KOG0272|consen  217 TSRV--GAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS----------------------  272 (459)
T ss_pred             ccce--eeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC----------------------
Confidence            3556  45599997  569999999999999999988999999888877777777766                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           |.+|++++-|.+=++||+.++.... ...||..+|.+++|+|||..+++|+.|..-++||+++|+++..+.+|..
T Consensus       273 -----G~~L~TasfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k  346 (459)
T KOG0272|consen  273 -----GKFLGTASFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK  346 (459)
T ss_pred             -----CceeeecccccchhhcccccchhhH-hhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence                 9999999999999999999998763 3479999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|.+++|+|+|..+|+|+  ++++|||++..+.+.++++|.+-|+.++|+| .|.+|++++ .|+++++|...+..+   
T Consensus       347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs~~~~~~---  422 (459)
T KOG0272|consen  347 EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWSTRTWSP---  422 (459)
T ss_pred             ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-cCcceeeecCCCccc---
Confidence            999999999999999999  8999999999999999999999999999999 677777777 799999999988764   


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                        +..+..+...+-++.++     +++.++++++.|.++++|.
T Consensus       423 --~ksLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  423 --LKSLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             --chhhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence              45666666666677777     9999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-34  Score=251.49  Aligned_cols=287  Identities=18%  Similarity=0.250  Sum_probs=235.3

Q ss_pred             CCcccceEEEEccC-CCEEEEEeCCCcEEEEECC-----CCeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058            3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTL-----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         3 ~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.-|..+  +..+. .+.+.+++.|.++.+|++.     .|..+..+++|...+.....+++                  
T Consensus        15 ~d~Vt~l--a~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d------------------   74 (315)
T KOG0279|consen   15 TDWVTAL--AIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD------------------   74 (315)
T ss_pred             CceEEEE--EeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC------------------
Confidence            4456444  66665 4689999999999999864     46678889998888887777776                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                               +++.++++.|+.+++||+.+++...++ .+|...|.+++|+||++.+++|+.|.+|++||.. |.+..++.
T Consensus        75 ---------g~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~  143 (315)
T KOG0279|consen   75 ---------GNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIH  143 (315)
T ss_pred             ---------CceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEe
Confidence                     899999999999999999999887666 6899999999999999999999999999999975 56666665


Q ss_pred             cC--CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          157 AS--TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       157 ~~--~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      .+  .+.|+|+.|+|+  ..++++++  ++|++||+++.+....+.||.+.++.+.++|||...++++ .||.+.+||++
T Consensus       144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg-kdg~~~LwdL~  222 (315)
T KOG0279|consen  144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG-KDGEAMLWDLN  222 (315)
T ss_pred             cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC-CCceEEEEEcc
Confidence            54  579999999998  78899888  8999999999999999999999999999999999999987 89999999999


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      .++     +.+.+++.. .+..++|+     |+..+|+.+... .|+|||+++...+..+++.-..        +..+  
T Consensus       223 ~~k-----~lysl~a~~-~v~sl~fs-----pnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g--------~s~~--  280 (315)
T KOG0279|consen  223 EGK-----NLYSLEAFD-IVNSLCFS-----PNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIG--------PSSK--  280 (315)
T ss_pred             CCc-----eeEeccCCC-eEeeEEec-----CCceeEeeccCC-ceEEEeccchhhhhhccccccc--------cccc--
Confidence            987     346665554 56677787     887777776654 5999999998877655422110        0000  


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                          ...-...+++||+||..| ++|-.|+.|++|.+.
T Consensus       281 ------------------------------------~~~~~clslaws~dG~tL-f~g~td~~irv~qv~  313 (315)
T KOG0279|consen  281 ------------------------------------AGDPICLSLAWSADGQTL-FAGYTDNVIRVWQVA  313 (315)
T ss_pred             ------------------------------------cCCcEEEEEEEcCCCcEE-EeeecCCcEEEEEee
Confidence                                                111246889999999999 999999999999874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-33  Score=266.38  Aligned_cols=357  Identities=16%  Similarity=0.166  Sum_probs=259.4

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEecccccccccccccccccc----ccc-cCccceEEeeec
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLER----EHL-SVDYTCMKWLSV   76 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~w~~~   76 (579)
                      .++  ....|||.|.|+|+|...|+|||||.....  +..+|+...+++..+.|..+-.+    |.- ..-.....|.+.
T Consensus        60 ~~v--tVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG  137 (603)
T KOG0318|consen   60 HQV--TVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG  137 (603)
T ss_pred             cee--EEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence            455  344899999999999999999999986533  45678888888888888866211    000 112233444432


Q ss_pred             cc------cc-------ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058           77 DR------KK-------KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE  143 (579)
Q Consensus        77 ~~------~~-------~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i  143 (579)
                      +.      +.       -|+..+-.+++|+.|+.|.+|+-..-+..... ..|..-|+|+.|+|||.+|++++.||++.+
T Consensus       138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~-r~HskFV~~VRysPDG~~Fat~gsDgki~i  216 (603)
T KOG0318|consen  138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSF-REHSKFVNCVRYSPDGSRFATAGSDGKIYI  216 (603)
T ss_pred             CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecc-cccccceeeEEECCCCCeEEEecCCccEEE
Confidence            21      00       11112567999999999999987666665444 679999999999999999999999999999


Q ss_pred             EeCCCCceeeEee---cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-------------------------
Q 008058          144 IDPLTGSLLGKFR---ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-------------------------  193 (579)
Q Consensus       144 wd~~~~~~~~~~~---~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-------------------------  193 (579)
                      ||=.+|+.+..+.   +|++.|.+++|+||++.+++++  .+++|||+.+.++++                         
T Consensus       217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV  296 (603)
T KOG0318|consen  217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV  296 (603)
T ss_pred             EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence            9999999999988   8999999999999999999998  799999997654332                         


Q ss_pred             ------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc-----------------e
Q 008058          194 ------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA-----------------S  238 (579)
Q Consensus       194 ------------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~-----------------~  238 (579)
                                        .+.||...|+++..+|++++|++++ .||.|.-|+...+.....                 .
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~  375 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG  375 (603)
T ss_pred             EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence                              4568999999999999999999997 799999999876542100                 0


Q ss_pred             eEE------------------------eeecCc-----------------------------------eeeEeEEecCCc
Q 008058          239 CVL------------------------AMEHPA-----------------------------------VFMDCRCIDNGG  259 (579)
Q Consensus       239 ~~~------------------------~~~~~~-----------------------------------~~~~~~~~~~~~  259 (579)
                      .++                        .+.+..                                   ....++++    
T Consensus       376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv----  451 (603)
T KOG0318|consen  376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV----  451 (603)
T ss_pred             cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE----
Confidence            000                        000000                                   01112233    


Q ss_pred             ccCCCcEEEEEEcCCeEEEEECCCceeec--ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCC
Q 008058          260 VDDAGLYVLAISETGVCYIWYGQNIEELR--NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL  337 (579)
Q Consensus       260 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~  337 (579)
                       +|++..+++|++||+|+||.+..++...  ....++-.+.... ++|+++    +++++...+.+-++       .-..
T Consensus       452 -~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~----yla~~Da~rkvv~y-------d~~s  518 (603)
T KOG0318|consen  452 -SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGA----YLAAGDASRKVVLY-------DVAS  518 (603)
T ss_pred             -cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCc----EEEEeccCCcEEEE-------Eccc
Confidence             4999999999999999999987765322  1222232333322 788888    88888775533332       2222


Q ss_pred             CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058          338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                      -+........|+..|.+++|||+..++ +|||-|..+.+|++.+.
T Consensus       519 ~~~~~~~w~FHtakI~~~aWsP~n~~v-ATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  519 REVKTNRWAFHTAKINCVAWSPNNKLV-ATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             CceecceeeeeeeeEEEEEeCCCceEE-EeccccceEEEEEccCh
Confidence            222334556799999999999999999 99999999999999754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-35  Score=266.09  Aligned_cols=279  Identities=15%  Similarity=0.253  Sum_probs=246.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|  ..+-|+|+-..+++++.|++|++||..+|++...+++|...+.++.|...                         
T Consensus       109 ~~v--t~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~-------------------------  161 (406)
T KOG0295|consen  109 SSV--TRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDAS-------------------------  161 (406)
T ss_pred             cce--eeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecC-------------------------
Confidence            567  44489999999999999999999999999999999988888777777655                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                        +.++++++.|-.+++||..+. +++ +...+|.-.|.+++|-|.|.++++++.|.+|++|++.+|-++++|.+|...|
T Consensus       162 --Gk~l~tcSsDl~~~LWd~~~~~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv  238 (406)
T KOG0295|consen  162 --GKYLATCSSDLSAKLWDFDTFFRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV  238 (406)
T ss_pred             --ccEEEecCCccchhheeHHHHHHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence              889999999999999999874 344 3446899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC---------------CCEEEEEecCCCeEE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN---------------GKYVLSSAVGERYIA  225 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~---------------~~~l~s~s~~d~~i~  225 (579)
                      ..++.+.||.++++++  .++++|-+.++++...+.+|..+|-+++|.|.               ++++.+++ .|++|+
T Consensus       239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S-rDktIk  317 (406)
T KOG0295|consen  239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS-RDKTIK  317 (406)
T ss_pred             EEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec-ccceEE
Confidence            9999999999999999  79999999999999999999999999999773               24777776 899999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      +||+.++.     |++++..+...+..+.|+     |.|+||+++.+|+++++||+++++.+....              
T Consensus       318 ~wdv~tg~-----cL~tL~ghdnwVr~~af~-----p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------  373 (406)
T KOG0295|consen  318 IWDVSTGM-----CLFTLVGHDNWVRGVAFS-----PGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------  373 (406)
T ss_pred             EEeccCCe-----EEEEEecccceeeeeEEc-----CCCeEEEEEecCCcEEEEEeccceeeeccC--------------
Confidence            99999986     779999999999999998     999999999999999999998887655432              


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                               .|+..|.++.|..+..++ +|||-|.+.++|+.
T Consensus       374 -----------------------------------------ah~hfvt~lDfh~~~p~V-vTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  374 -----------------------------------------AHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  405 (406)
T ss_pred             -----------------------------------------CCcceeEEEecCCCCceE-Eeccccceeeeeec
Confidence                                                     455577788888777788 99999999999964

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-33  Score=274.83  Aligned_cols=325  Identities=16%  Similarity=0.180  Sum_probs=266.9

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .|  .++.||.|.++|++|+.|-+++||.++..+-  ...+.+|...+....|..+                        
T Consensus       147 di--~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~------------------------  200 (893)
T KOG0291|consen  147 DI--TSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN------------------------  200 (893)
T ss_pred             ce--eEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC------------------------
Confidence            46  6779999999999999999999999876554  5556677766666666554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccC-----------------------CeE-----E-----EEecCCCCCCEEEEEEccCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSA-----------------------GQL-----K-----WRLSDCHPGGVSAISFATHG  129 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~-----------------------~~~-----~-----~~~~~~h~~~V~~l~~~~~~  129 (579)
                         ..-+++.+.||.+.+|....                       ++.     .     ..++......|++.+|++.-
T Consensus       201 ---~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t  277 (893)
T KOG0291|consen  201 ---SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT  277 (893)
T ss_pred             ---cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc
Confidence               55689999999999998761                       111     1     11223334789999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEE
Q 008058          130 SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMT  206 (579)
Q Consensus       130 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~  206 (579)
                      +.|++|-..|...+|.+....+++.+.-...+|..++|+..|.+++.|+   |++.||+.++..-+.+.++|...+++++
T Consensus       278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA  357 (893)
T ss_pred             eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence            9999999999999999999999999988888999999999999999998   7999999999988999999999999999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       207 ~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      ++|||+++++++ +||.|+|||...+.     |..++..|...++.+.|.     ..|+.+++.+.||+|+.||+...+.
T Consensus       358 YSpDgq~iaTG~-eDgKVKvWn~~Sgf-----C~vTFteHts~Vt~v~f~-----~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  358 YSPDGQLIATGA-EDGKVKVWNTQSGF-----CFVTFTEHTSGVTAVQFT-----ARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ECCCCcEEEecc-CCCcEEEEeccCce-----EEEEeccCCCceEEEEEE-----ecCCEEEEeecCCeEEeeeecccce
Confidence            999999999998 79999999999886     668888888888999998     8999999999999999999998888


Q ss_pred             ecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008058          287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM  366 (579)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~  366 (579)
                      .+++..+.....+.....+.+.    .+.+|+.|.    ++..+|..   .....++.+.||+++|.+++|+|+|..| +
T Consensus       427 fRTft~P~p~QfscvavD~sGe----lV~AG~~d~----F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~L-a  494 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGE----LVCAGAQDS----FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLL-A  494 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCC----EEEeeccce----EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeE-E
Confidence            8776654433222211233344    677777653    34444443   3556777899999999999999999999 9


Q ss_pred             cccceecccceeeee
Q 008058          367 SQSLLKSKRGRYVQN  381 (579)
Q Consensus       367 s~s~d~~~~~w~~~~  381 (579)
                      |+|.|+++|+|++-.
T Consensus       495 S~SWDkTVRiW~if~  509 (893)
T KOG0291|consen  495 SGSWDKTVRIWDIFS  509 (893)
T ss_pred             eccccceEEEEEeec
Confidence            999999999999853

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-34  Score=259.14  Aligned_cols=285  Identities=14%  Similarity=0.210  Sum_probs=242.5

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +=||++  ++.|-.++|++|+.|++|+|||+.+|++..++.+|...+..+.++..                         
T Consensus       152 gWVr~v--avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-------------------------  204 (460)
T KOG0285|consen  152 GWVRSV--AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-------------------------  204 (460)
T ss_pred             ceEEEE--eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-------------------------
Confidence            346555  99999999999999999999999999999999988888877777755                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        ..++++++.|+.|+.||+..++.+..+ .||-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|.
T Consensus       205 --HpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~  281 (460)
T KOG0285|consen  205 --HPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA  281 (460)
T ss_pred             --CceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence              678999999999999999999999776 68999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      ++.+.|-...+++|+  ++|++||++.|+...++..|...|.+++.+|....|++++ .| .|+-|++..+...     .
T Consensus       282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~-----~  354 (460)
T KOG0285|consen  282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFL-----Q  354 (460)
T ss_pred             eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchh-----h
Confidence            999999889999999  8999999999999999999999999999999988888876 45 5999999988744     2


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .+..+..++..+...      +..++++|++.|.+.+||.+++-..+..+.                    .+.-|+.+ 
T Consensus       355 nlsgh~~iintl~~n------sD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------~vqpGSl~-  407 (460)
T KOG0285|consen  355 NLSGHNAIINTLSVN------SDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------IVQPGSLE-  407 (460)
T ss_pred             ccccccceeeeeeec------cCceEEEcCCceEEEEEecCcCcccccccc--------------------cccCCccc-
Confidence            355666677777664      557789999999999999988865443221                    11122221 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                .+..|.+.+|...|.-| +||..|++|++|.-
T Consensus       408 --------------------------sEagI~as~fDktg~rl-it~eadKtIk~~ke  438 (460)
T KOG0285|consen  408 --------------------------SEAGIFASCFDKTGSRL-ITGEADKTIKMYKE  438 (460)
T ss_pred             --------------------------cccceeEEeecccCceE-EeccCCcceEEEec
Confidence                                      12247778888889889 99999999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-35  Score=271.45  Aligned_cols=281  Identities=14%  Similarity=0.178  Sum_probs=232.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|..+  .|.|+|+.|++|+..|.+.+|+..+......++.|..                  .++++.|.+.       
T Consensus        97 c~V~~v--~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs------------------~Vr~m~ws~~-------  149 (464)
T KOG0284|consen   97 CPVNVV--RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDS------------------PVRTMKWSHN-------  149 (464)
T ss_pred             cceeeE--EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcc------------------cceeEEEccC-------
Confidence            467445  9999999999999999999999744333333334443                  4556666654       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        +.++++|+.+|.|++|+...+... .+...|...|++++|+|+...|++|+.||+|+|||....+....+.+|...|.
T Consensus       150 --g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  150 --GTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             --CCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence              889999999999999999877654 33344568999999999999999999999999999999998889999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++|+|...++++|+  +.|++||.+++.++.++.+|+..|..+.|+|++++|+++| .|..++++|+++.+..     +
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~s-kD~~~kv~DiR~mkEl-----~  300 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGS-KDQSCKVFDIRTMKEL-----F  300 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEcc-CCceEEEEehhHhHHH-----H
Confidence            999999999999999  8999999999999999999999999999999999999998 7999999999965533     4


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      ....+...+..+.|.+    -....+.+|+.||.|..|.+...+.+..+                               
T Consensus       301 ~~r~Hkkdv~~~~WhP----~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-------------------------------  345 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHP----LNESLFTSGGSDGSVVHWVVGLEEPLGEI-------------------------------  345 (464)
T ss_pred             Hhhcchhhheeecccc----ccccceeeccCCCceEEEeccccccccCC-------------------------------
Confidence            5555555566666653    25678899999999999987632222111                               


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                             -.+|...|++++|.|=|..| ++||.|+++++|..
T Consensus       346 -----------------------~~AHd~~iwsl~~hPlGhil-~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  346 -----------------------PPAHDGEIWSLAYHPLGHIL-ATGSNDRTVRFWTR  379 (464)
T ss_pred             -----------------------CcccccceeeeeccccceeE-eecCCCcceeeecc
Confidence                                   01588899999999999999 99999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-33  Score=244.68  Aligned_cols=243  Identities=16%  Similarity=0.196  Sum_probs=202.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.-|.++  +.++||++.++++.|+++++||+.+|+..+.|.+|...+.++.|+++                        
T Consensus        63 sH~v~dv--~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~d------------------------  116 (315)
T KOG0279|consen   63 SHFVSDV--VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTD------------------------  116 (315)
T ss_pred             ceEecce--EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCC------------------------
Confidence            3456555  89999999999999999999999999999999999888888888777                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         ++.+++|+.|.+|++||+..+.........|.+-|+|+.|+|+  ..+|++++.|++|++||+++.+....+.+|.+
T Consensus       117 ---n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~  193 (315)
T KOG0279|consen  117 ---NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG  193 (315)
T ss_pred             ---CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc
Confidence               7889999999999999998776654443445889999999997  77899999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .++.++++|||.++++|+  |.+.+||++.++.+..+. |...|.+++|+|+...|+.+  .+..|+|||+.+.......
T Consensus       194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhc
Confidence            999999999999999999  899999999999988775 88999999999997666655  4677999999987643100


Q ss_pred             eEE----eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          239 CVL----AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       239 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ...    ...........++|+     ++|..|++|-.|+.|++|.+.
T Consensus       271 ~~d~~g~s~~~~~~~clslaws-----~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  271 KLDGIGPSSKAGDPICLSLAWS-----ADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cccccccccccCCcEEEEEEEc-----CCCcEEEeeecCCcEEEEEee
Confidence            000    011112333344555     899999999999999999763

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.3e-34  Score=282.01  Aligned_cols=238  Identities=14%  Similarity=0.216  Sum_probs=207.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-------------------------------EEEecccccccccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-------------------------------QTEFADIASTETTSLYGN   57 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   57 (579)
                      .|+.||+|+..||.|-.|..|++|.+...+.                               ..++.+|.+++....|+|
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            6779999999999999999999999874221                               112334444444444444


Q ss_pred             ccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC
Q 008058           58 RLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        58 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~  137 (579)
                      +                           .++|++|+.|++|++|.+.+..++..+ .||..||+++.|+|-|-+|+|++.
T Consensus       462 d---------------------------~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  462 D---------------------------RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             c---------------------------ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCCceEEEecCC
Confidence            4                           789999999999999999999998666 599999999999999999999999


Q ss_pred             CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      |++.++|......+.+.|.+|-..|.|+.|+|++.++++|+  .++++||+.+|..++.|.||.++|++++|+|+|++|+
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence            99999999999999999999999999999999999999999  8999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      +++ .|+.|.+||+.++...     ..+..+...+..+.|+     .+|..||+|+.|.+|++||+....
T Consensus       594 Sg~-ed~~I~iWDl~~~~~v-----~~l~~Ht~ti~SlsFS-----~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  594 SGD-EDGLIKIWDLANGSLV-----KQLKGHTGTIYSLSFS-----RDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             ecc-cCCcEEEEEcCCCcch-----hhhhcccCceeEEEEe-----cCCCEEEecCCCCeEEEEEchhhc
Confidence            998 7999999999998744     3344447778888888     999999999999999999976543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-33  Score=274.35  Aligned_cols=344  Identities=16%  Similarity=0.203  Sum_probs=280.9

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +|  .|++-+||.-+||.|..||.|+||+..++.....+.+|...++.+.|...                          
T Consensus        67 ev--t~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~--------------------------  118 (888)
T KOG0306|consen   67 EV--TCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKI--------------------------  118 (888)
T ss_pred             eE--EEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEccc--------------------------
Confidence            55  44477788889999999999999999988888888888877776666655                          


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--------
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--------  156 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------  156 (579)
                       |..|++|+.|+.|.+||+-......++ .||...|+..-|..+.+++++++.|+.|++||+.+..++.+.-        
T Consensus       119 -G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~  196 (888)
T KOG0306|consen  119 -GTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWA  196 (888)
T ss_pred             -CceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEE
Confidence             899999999999999999887777677 6899999999999888899999999999999998765443321        


Q ss_pred             --------------------------------------------------------------------------------
Q 008058          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       197 l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~  276 (888)
T KOG0306|consen  197 LVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSK  276 (888)
T ss_pred             EEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 008058          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       277 ~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~  356 (888)
T KOG0306|consen  277 EEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK  356 (888)
T ss_pred             HHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC
Confidence                                                                                            


Q ss_pred             --------------cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe--------------------------
Q 008058          157 --------------ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF--------------------------  195 (579)
Q Consensus       157 --------------~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~--------------------------  195 (579)
                                    +|...|.+++++.+...+++|+ +.+++|+..+.++++++                          
T Consensus       357 ~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  357 TSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGEL  436 (888)
T ss_pred             CCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCce
Confidence                          4666788889998888888887 89999999877766532                          


Q ss_pred             --------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc--ccceeE------EeeecCceeeEeE
Q 008058          196 --------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK--QSASCV------LAMEHPAVFMDCR  253 (579)
Q Consensus       196 --------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~--~~~~~~------~~~~~~~~~~~~~  253 (579)
                                    +.|.+.|.+++.+||++.++++| .|.+|++||+.-...  .....+      .+++-++ .+.++
T Consensus       437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s-aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d-dvL~v  514 (888)
T KOG0306|consen  437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS-ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED-DVLCV  514 (888)
T ss_pred             EEEEeehhhhhhhhhccccceeeeeecCCCCceEEec-CCcEEEEEeEEEEeccCcccceeeeeccceEEeccc-cEEEE
Confidence                          35889999999999999999998 799999999743211  001111      2222333 34567


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEE
Q 008058          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVA  333 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  333 (579)
                      .++     |||++|+++=.|++++||-+++.+..-+..+++.++.|.+ .+++++    .|++|+.|..++.        
T Consensus       515 ~~S-----pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD-IS~DSk----livTgSADKnVKi--------  576 (888)
T KOG0306|consen  515 SVS-----PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD-ISPDSK----LIVTGSADKNVKI--------  576 (888)
T ss_pred             EEc-----CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe-ccCCcC----eEEeccCCCceEE--------
Confidence            777     9999999999999999999999999999999999999988 688888    9999999987776        


Q ss_pred             eCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec--eeeeccCCccccccCCc
Q 008058          334 YGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR--VTALDRANAEDAVLPLP  399 (579)
Q Consensus       334 ~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~~  399 (579)
                      +|.....|...+-+|...|.++.|-|+..+. +|+|.|+.+|.|+..+-  +..++....+-..++..
T Consensus       577 WGLdFGDCHKS~fAHdDSvm~V~F~P~~~~F-Ft~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~  643 (888)
T KOG0306|consen  577 WGLDFGDCHKSFFAHDDSVMSVQFLPKTHLF-FTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS  643 (888)
T ss_pred             eccccchhhhhhhcccCceeEEEEcccceeE-EEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence            7778888888999999999999999988888 99999999999987533  67777666655555433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-33  Score=245.17  Aligned_cols=283  Identities=14%  Similarity=0.189  Sum_probs=231.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+.|  ..+.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.+..+.|..+                       
T Consensus        47 ~geI--~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d-----------------------  101 (338)
T KOG0265|consen   47 KGEI--YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRD-----------------------  101 (338)
T ss_pred             cceE--EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccC-----------------------
Confidence            4667  666999999999999999999999964 23345667788877777666666                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          ++.+++++.|.+|+.||+++|+++.+. ++|..-|+.+.-+.-|.. +.+++.||++++||+++...++++. .+.
T Consensus       102 ----~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~ky  175 (338)
T KOG0265|consen  102 ----GSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKY  175 (338)
T ss_pred             ----CCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cce
Confidence                889999999999999999999999777 689999999986555554 6678899999999999999888876 356


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      +++++.|..++..+.+|+  +.|++||++.+....++.||..+|+.+..+|+|.++.+-+ .|.++++||++.-... ..
T Consensus       176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~-~R  253 (338)
T KOG0265|consen  176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPS-QR  253 (338)
T ss_pred             eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCC-Cc
Confidence            899999999999999999  8999999999999999999999999999999999999988 6999999999875433 22


Q ss_pred             eEEeeec--Cce--eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          239 CVLAMEH--PAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       239 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      ++..+..  +..  .+-.+.|+     |++.++.+|+.|..+++||......+.                          
T Consensus       254 ~v~if~g~~hnfeknlL~csws-----p~~~~i~ags~dr~vyvwd~~~r~~ly--------------------------  302 (338)
T KOG0265|consen  254 CVKIFQGHIHNFEKNLLKCSWS-----PNGTKITAGSADRFVYVWDTTSRRILY--------------------------  302 (338)
T ss_pred             eEEEeecchhhhhhhcceeecc-----CCCCccccccccceEEEeecccccEEE--------------------------
Confidence            3333222  111  12223444     999999999999999999864432221                          


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                   ++.||.+.|.++.|.|...+| .+++.|+++++-++
T Consensus       303 -----------------------------klpGh~gsvn~~~Fhp~e~ii-ls~~sdk~i~lgei  337 (338)
T KOG0265|consen  303 -----------------------------KLPGHYGSVNEVDFHPTEPII-LSCSSDKTIYLGEI  337 (338)
T ss_pred             -----------------------------EcCCcceeEEEeeecCCCcEE-EEeccCceeEeecc
Confidence                                         455888899999999999999 99999999887654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.4e-32  Score=279.23  Aligned_cols=280  Identities=23%  Similarity=0.335  Sum_probs=229.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..|  .++.|+|+|+++++++.|+.+++|+..++.  ....+.+|...+..+.|+++                       
T Consensus       160 ~sv--~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-----------------------  214 (456)
T KOG0266|consen  160 PSV--TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-----------------------  214 (456)
T ss_pred             Cce--EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-----------------------
Confidence            456  566999999999999999999999997777  66666666666666666655                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          +.++++++.|++|++||+.. +..+..+ .+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|.+
T Consensus       215 ----~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  215 ----GSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             ----CcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence                78999999999999999944 4666555 69999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~--v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .|++++|+++|++|++++  +.|++||+.++.  ++..+.++..+  ++++.|+|++.++++++ .|+.+++||+..+..
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKS  368 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcc
Confidence            999999999999999998  999999999998  56778777666  99999999999999997 799999999998764


Q ss_pred             ccceeEEeeecCce--eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          235 QSASCVLAMEHPAV--FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       235 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      ..   .+ ..|...  .+....+     .+++.++++|+.|+.|++||..++..+..                       
T Consensus       369 ~~---~~-~~~~~~~~~~~~~~~-----~~~~~~i~sg~~d~~v~~~~~~s~~~~~~-----------------------  416 (456)
T KOG0266|consen  369 VG---TY-TGHSNLVRCIFSPTL-----STGGKLIYSGSEDGSVYVWDSSSGGILQR-----------------------  416 (456)
T ss_pred             ee---ee-cccCCcceeEecccc-----cCCCCeEEEEeCCceEEEEeCCccchhhh-----------------------
Confidence            41   11 122222  2222222     37999999999999999999877654432                       


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecccc--ceecccceee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~  379 (579)
                                                      +.+| ...+..++++|...++ ++++  .|+.+++|..
T Consensus       417 --------------------------------l~~h~~~~~~~~~~~~~~~~~-~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  417 --------------------------------LEGHSKAAVSDLSSHPTENLI-ASSSFEGDGLIRLWKY  453 (456)
T ss_pred             --------------------------------hcCCCCCceeccccCCCcCee-eecCcCCCceEEEecC
Confidence                                            2345 5567788888888888 7776  6888888864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.8e-32  Score=254.75  Aligned_cols=339  Identities=17%  Similarity=0.212  Sum_probs=258.0

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .++|  ++++|+|-.. .+++|+.|-+.++|++....-..+.    ..+....+............+|+++|...     
T Consensus       178 ~~~V--~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-----  246 (524)
T KOG0273|consen  178 ESEV--FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----QLVLRHCIREGGKSVPSNKDVTSLDWNND-----  246 (524)
T ss_pred             CCce--EEEecCchhhhhhhccCCccceeeeeehhhccccch----hhhhhhhhhhhcccCCccCCcceEEecCC-----
Confidence            5778  8999999766 8999999999999998641110000    00000001000012233578999999876     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +++|++|+.+|.+++|+...+.. ..+ ..|.++|.++.|+..|.||++++.|+++.+||..+|...+.|.-|..+
T Consensus       247 ----G~~LatG~~~G~~riw~~~G~l~-~tl-~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  247 ----GTLLATGSEDGEARIWNKDGNLI-STL-GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             ----CCeEEEeecCcEEEEEecCchhh-hhh-hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence                89999999999999999765443 233 679999999999999999999999999999999999999999988888


Q ss_pred             eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      -..+.|-.+..+..++. +.|+|+.+...+++.++.+|.++|.++.|.|.|..|++++ +|+++++|+......     .
T Consensus       321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~-----~  394 (524)
T KOG0273|consen  321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNS-----V  394 (524)
T ss_pred             ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcc-----h
Confidence            77889986554444444 9999999999999999999999999999999999999997 799999999776542     2


Q ss_pred             EeeecCceeeEeEEecCCc-c--c-CCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          241 LAMEHPAVFMDCRCIDNGG-V--D-DAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~-~--~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ..+..+...+....|++.. .  . .++..+++++.|++|++||+..+.++..+..+...+.+.+ |+|+++    ++++
T Consensus       395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~----ylAs  469 (524)
T KOG0273|consen  395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGR----YLAS  469 (524)
T ss_pred             hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCc----EEEe
Confidence            3444444444455555321 1  1 2467899999999999999999999988877777766666 899988    9999


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |++++.+.++.        ......++...+.. .|..++|+.+|.+|.++.| |+.+.+-++
T Consensus       470 Gs~dg~V~iws--------~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~s-d~~vcvldl  522 (524)
T KOG0273|consen  470 GSLDGCVHIWS--------TKTGKLVKSYQGTG-GIFELCWNAAGDKLGACAS-DGSVCVLDL  522 (524)
T ss_pred             cCCCCeeEecc--------ccchheeEeecCCC-eEEEEEEcCCCCEEEEEec-CCCceEEEe
Confidence            99998776644        33344444544443 5899999999999945554 888877654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.6e-32  Score=239.50  Aligned_cols=232  Identities=18%  Similarity=0.306  Sum_probs=203.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCC------eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKG------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|+|+|.|+++|+|+-|+...||++.+.      +...++.+|.+.+.                  |+.+..       
T Consensus       101 MtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS------------------cC~f~d-------  155 (343)
T KOG0286|consen  101 MTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS------------------CCRFLD-------  155 (343)
T ss_pred             EEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE------------------EEEEcC-------
Confidence            78999999999999999999999999754      23445555554333                  344433       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         ...|++++.|.+.-+||+++++.+..+ .+|.+.|.++.++| +++.+++|+.|+..++||++.+.++++|.+|...
T Consensus       156 ---D~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD  231 (343)
T KOG0286|consen  156 ---DNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD  231 (343)
T ss_pred             ---CCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence               456999999999999999999998766 69999999999999 9999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      |++++|.|+|.-+++|+  ++.++||++..+.+..+..  -..+|++++|+..|++|+++. .|.++.+||.-.++.   
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~---  307 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGER---  307 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccce---
Confidence            99999999999999999  8999999999998888862  236799999999999999886 799999999887763   


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                        +-.+..|...++++..+     |||.-+++|+.|.+++||.
T Consensus       308 --vg~L~GHeNRvScl~~s-----~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  308 --VGVLAGHENRVSCLGVS-----PDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --EEEeeccCCeeEEEEEC-----CCCcEEEecchhHheeecC
Confidence              34566888888999998     9999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.8e-32  Score=232.42  Aligned_cols=252  Identities=17%  Similarity=0.265  Sum_probs=210.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+-|+.+  ..+||+.+||+++. ..||+||+.++.  .+.+|.+|...+..+.|..+                      
T Consensus        40 dsqVNrL--eiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d----------------------   94 (311)
T KOG0315|consen   40 DSQVNRL--EITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD----------------------   94 (311)
T ss_pred             ccceeeE--EEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec----------------------
Confidence            4667777  89999999999985 579999998775  58889988887777777766                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-CC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-ST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~  159 (579)
                           ++..++|+.||+++|||++...+...+  .|.++|+++..+|+...|++|..+|.|++||+.+..+...+-. ..
T Consensus        95 -----grWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   95 -----GRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             -----CeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence                 899999999999999999996665444  4889999999999999999999999999999998866665443 34


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ..|.++...|||++++.+.  |..++|++-+.      +++.+|+.|.+.+..+.+|||+++|++++ .|.+++||+.++
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s-sdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS-SDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-CCceEEEEecCC
Confidence            5899999999999999998  99999998764      45677899999999999999999999998 599999999988


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      .-+    ....+..+...+--+.|+     .||.||++++.|+.+++|++..++.++...++...
T Consensus       247 ~~k----le~~l~gh~rWvWdc~FS-----~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~  302 (311)
T KOG0315|consen  247 FFK----LELVLTGHQRWVWDCAFS-----ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA  302 (311)
T ss_pred             cee----eEEEeecCCceEEeeeec-----cCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence            721    223444554555555666     79999999999999999999999988877665443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-31  Score=233.49  Aligned_cols=247  Identities=14%  Similarity=0.124  Sum_probs=190.2

Q ss_pred             ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058          112 LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (579)
Q Consensus       112 ~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~  187 (579)
                      +..+|...|++++|+|.|++|++++-|.++.||.-..  .+++.++.+|...|.|++|+++|++||+++  .+|.||.+.
T Consensus        56 ld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   56 LDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             ccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            4467999999999999999999999999999998653  378889999999999999999999999999  799999987


Q ss_pred             CC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058          188 DH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       188 ~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+   .++..+++|...|..+.|+|....|++++ .|++|++|+-..+.  ...++.++..+...+-+..|.     +.|
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dd--dW~c~~tl~g~~~TVW~~~F~-----~~G  207 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDD--DWECVQTLDGHENTVWSLAFD-----NIG  207 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCC--CeeEEEEecCccceEEEEEec-----CCC
Confidence            54   56788999999999999999998999988 79999999887432  345788888887778888887     899


Q ss_pred             cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE
Q 008058          265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK  344 (579)
Q Consensus       265 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  344 (579)
                      ..|+++++|++++||...+.-... +......+.    +.      ...|+++..|+.++++... ....+.........
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~----W~------~~~IaS~ggD~~i~lf~~s-~~~d~p~~~l~~~~  275 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVP----WD------NGVIASGGGDDAIRLFKES-DSPDEPSWNLLAKK  275 (312)
T ss_pred             ceEEEecCCcceEeeeeccCcchh-cccceEeee----ec------ccceEeccCCCEEEEEEec-CCCCCchHHHHHhh
Confidence            999999999999999754221111 111111111    11      1278888887766654322 00011111222223


Q ss_pred             EecCCCCcEEEeecCC-cceeeccccceecccceee
Q 008058          345 ILVNSGEDINLNCSQD-GVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       345 ~~~h~~~v~~~~~s~d-g~~l~~s~s~d~~~~~w~~  379 (579)
                      -..|...|.++.|.|. ...| +|||.||.+++|++
T Consensus       276 ~~aHe~dVNsV~w~p~~~~~L-~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  276 EGAHEVDVNSVQWNPKVSNRL-ASGGDDGIVNFWEL  310 (312)
T ss_pred             hcccccccceEEEcCCCCCce-eecCCCceEEEEEe
Confidence            4469999999999996 4566 99999999999987

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.6e-32  Score=272.58  Aligned_cols=201  Identities=19%  Similarity=0.329  Sum_probs=190.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++||  ..+.|+|+.++|++||.|+++|+|.+.+..++..+++|..++..+.|+|-                       
T Consensus       450 H~GPV--yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-----------------------  504 (707)
T KOG0263|consen  450 HSGPV--YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-----------------------  504 (707)
T ss_pred             CCCce--eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------------------
Confidence            57899  77799999999999999999999999999999999999999998888876                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          |-++++++.|++-++|........ +++.+|.+.|.|+.|+|+..|+++||.|.+|++||+.+|..++.|.+|.++
T Consensus       505 ----GyYFatas~D~tArLWs~d~~~Pl-RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~  579 (707)
T KOG0263|consen  505 ----GYYFATASHDQTARLWSTDHNKPL-RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP  579 (707)
T ss_pred             ----ceEEEecCCCceeeeeecccCCch-hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence                889999999999999999987776 455789999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      |.+++|+|+|++|++|+  |.|.+||+.+++.+..+.+|++.|.++.|+.+|..|+++| .|++|++||+....
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLTKVI  652 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEchhhc
Confidence            99999999999999999  9999999999999999999999999999999999999998 79999999987654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-32  Score=250.82  Aligned_cols=284  Identities=16%  Similarity=0.184  Sum_probs=223.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +..|  +.+.||++|+|||+++.|.+..||++....   ...++.+|..++.-+.|+|+                     
T Consensus       224 tdEV--Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD---------------------  280 (519)
T KOG0293|consen  224 TDEV--WFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD---------------------  280 (519)
T ss_pred             CCcE--EEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC---------------------
Confidence            3456  778999999999999999999999875433   35566666655554444444                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                            .+++++|+.+..+.+||+.+|.+...+..+|...+.+++|.|||..+++|+.|+++..||+. |.....+++-.
T Consensus       281 ------dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr  353 (519)
T KOG0293|consen  281 ------DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR  353 (519)
T ss_pred             ------CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc
Confidence                  78899999999999999999999877777777899999999999999999999999999984 66666676544


Q ss_pred             -CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          160 -KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       160 -~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                       ..|.+++.++||+++++.+  ..|++|+..+......+. ...+|+++..+.+++++++.- .+..+.+||+...+...
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL-~~qei~LWDl~e~~lv~  431 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL-QDQEIHLWDLEENKLVR  431 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc-ccCeeEEeecchhhHHH
Confidence             3699999999999988877  899999987765444333 457899999999999988875 79999999999665331


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                        . +.-......+--.||..    .+..++++|++|+.|+||+..+++.+.                            
T Consensus       432 --k-Y~Ghkq~~fiIrSCFgg----~~~~fiaSGSED~kvyIWhr~sgkll~----------------------------  476 (519)
T KOG0293|consen  432 --K-YFGHKQGHFIIRSCFGG----GNDKFIASGSEDSKVYIWHRISGKLLA----------------------------  476 (519)
T ss_pred             --H-hhcccccceEEEeccCC----CCcceEEecCCCceEEEEEccCCceeE----------------------------
Confidence              0 11111222333344431    466899999999999999977665532                            


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                 .+.||...|.+++|+|......||+|.|++||+|..+
T Consensus       477 ---------------------------~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  477 ---------------------------VLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             ---------------------------eecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence                                       4558888999999999887666999999999999763

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=9.8e-31  Score=253.36  Aligned_cols=280  Identities=23%  Similarity=0.310  Sum_probs=231.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++++.||.|++|+..++.....+..|...+.                  .+.|.+.     
T Consensus         8 h~~~i--~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~------------------~~~~~~~-----   62 (289)
T cd00200           8 HTGGV--TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR------------------DVAASAD-----   62 (289)
T ss_pred             cCCCE--EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee------------------EEEECCC-----
Confidence            45788  5669999999999999999999999998877766665544333                  4444443     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++++.+|.|++||+.+++....+ ..|...|.++.|+|+++++++++.||.|++||+.+++....+..|...
T Consensus        63 ----~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 ----GTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             ----CCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence                567999999999999999987776555 478889999999999888888888999999999989999899889999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +.+++|+|++.++++++  +.|++||+++++.+..+..|...+.++.|+|+++.+++++ .|+.+++||++.++..    
T Consensus       138 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~----  212 (289)
T cd00200         138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKCL----  212 (289)
T ss_pred             EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCcee----
Confidence            99999999999999886  8999999999999999999999999999999999999887 5999999999876533    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                       ..+..+...+..+.++     |++.++++++.||.+++||..+++.+.                               
T Consensus       213 -~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~i~~~~~~~~~~-------------------------------  255 (289)
T cd00200         213 -GTLRGHENGVNSVAFS-----PDGYLLASGSEDGTIRVWDLRTGECVQ-------------------------------  255 (289)
T ss_pred             -cchhhcCCceEEEEEc-----CCCcEEEEEcCCCcEEEEEcCCceeEE-------------------------------
Confidence             3332334456667776     888888888889999999986543221                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                              .+..|...+.+++|+|+|.++ ++++.|+.+++|+
T Consensus       256 ------------------------~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~iw~  289 (289)
T cd00200         256 ------------------------TLSGHTNSVTSLAWSPDGKRL-ASGSADGTIRIWD  289 (289)
T ss_pred             ------------------------EccccCCcEEEEEECCCCCEE-EEecCCCeEEecC
Confidence                                    112455578999999999999 9999999999995

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.2e-31  Score=288.54  Aligned_cols=304  Identities=16%  Similarity=0.174  Sum_probs=229.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.|  .+++|+|+|++||+|+.|+.|+||+..+.....  .....+..  .       ......+.+++|.+..     
T Consensus       483 ~~~V--~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~--~~~~~~~~--~-------~~~~~~v~~l~~~~~~-----  544 (793)
T PLN00181        483 SNLV--CAIGFDRDGEFFATAGVNKKIKIFECESIIKDG--RDIHYPVV--E-------LASRSKLSGICWNSYI-----  544 (793)
T ss_pred             CCcE--EEEEECCCCCEEEEEeCCCEEEEEECCcccccc--cccccceE--E-------ecccCceeeEEeccCC-----
Confidence            4567  556999999999999999999999975421000  00000000  0       0012356678888764     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         +..|++++.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..
T Consensus       545 ---~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        545 ---KSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence               678999999999999999999887666 68999999999997 7889999999999999999999998888754 57


Q ss_pred             eeEEEEc-cCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c
Q 008058          162 ISCMAVS-SDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S  236 (579)
Q Consensus       162 v~~l~~~-p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~  236 (579)
                      +.++.|+ ++|.++++|+  |.|++||+++.+ .+..+.+|...|.++.|. ++.++++++ .|++|++||++..... .
T Consensus       620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~~~  697 (793)
T PLN00181        620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISGIN  697 (793)
T ss_pred             eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccccC
Confidence            8999995 5799999998  899999998865 577888999999999997 677888887 7999999999754211 1


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ...+..+..+...+.++.|+     |++.+|++|+.||.|++|+......+....           +.....     +  
T Consensus       698 ~~~l~~~~gh~~~i~~v~~s-----~~~~~lasgs~D~~v~iw~~~~~~~~~s~~-----------~~~~~~-----~--  754 (793)
T PLN00181        698 ETPLHSFMGHTNVKNFVGLS-----VSDGYIATGSETNEVFVYHKAFPMPVLSYK-----------FKTIDP-----V--  754 (793)
T ss_pred             CcceEEEcCCCCCeeEEEEc-----CCCCEEEEEeCCCEEEEEECCCCCceEEEe-----------cccCCc-----c--
Confidence            12345566666677778887     899999999999999999975543221110           000000     0  


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                       .+.       ....|...|.+++|+|+|..+ ++|+.|+.|++|++
T Consensus       755 -----------------~~~-------~~~~~~~~V~~v~ws~~~~~l-va~~~dG~I~i~~~  792 (793)
T PLN00181        755 -----------------SGL-------EVDDASQFISSVCWRGQSSTL-VAANSTGNIKILEM  792 (793)
T ss_pred             -----------------ccc-------ccCCCCcEEEEEEEcCCCCeE-EEecCCCcEEEEec
Confidence                             000       112355679999999999999 99999999999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-31  Score=255.88  Aligned_cols=247  Identities=15%  Similarity=0.242  Sum_probs=218.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|+++  .|+|...+++++-..|+|.|||.++...+..|....-++....|-..                        
T Consensus        13 SdRVKsV--d~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR------------------------   66 (794)
T KOG0276|consen   13 SDRVKSV--DFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR------------------------   66 (794)
T ss_pred             CCceeee--ecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeec------------------------
Confidence            3456445  99999999999999999999999999999988765555544444322                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         .+++++|+.|..|++|+..+++.+..+ .+|.+-|++++.+|...+++++|.|-+|++||.+.+ .+.++|.+|...
T Consensus        67 ---knWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy  142 (794)
T KOG0276|consen   67 ---KNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY  142 (794)
T ss_pred             ---cceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE
Confidence               678999999999999999999999777 789999999999999999999999999999998754 788899999999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      |.+++|+| |.+.+++++  ++|+||.+.+..+..++.+|...|+++.|-+.  ..||++++ +|.+++|||.++..   
T Consensus       143 VMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga-DD~tiKvWDyQtk~---  218 (794)
T KOG0276|consen  143 VMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA-DDLTIKVWDYQTKS---  218 (794)
T ss_pred             EEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC-CCceEEEeecchHH---
Confidence            99999999 677899998  99999999999999999999999999999864  46999998 79999999999865   


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        |+.+++.|...++.++|.     |.=..+++|++||+++||+..+.++....
T Consensus       219 --CV~TLeGHt~Nvs~v~fh-----p~lpiiisgsEDGTvriWhs~Ty~lE~tL  265 (794)
T KOG0276|consen  219 --CVQTLEGHTNNVSFVFFH-----PELPIIISGSEDGTVRIWNSKTYKLEKTL  265 (794)
T ss_pred             --HHHHhhcccccceEEEec-----CCCcEEEEecCCccEEEecCcceehhhhh
Confidence              678899888889999998     88899999999999999998887765544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.5e-31  Score=237.32  Aligned_cols=324  Identities=14%  Similarity=0.112  Sum_probs=259.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++.+|+.+++|||+.|..-.||+..+|....++.+|+..+.+..|+.+                       
T Consensus        63 H~~sv--Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-----------------------  117 (399)
T KOG0296|consen   63 HTDSV--FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-----------------------  117 (399)
T ss_pred             cCCce--EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-----------------------
Confidence            45678  77799999999999999999999999999999999999998888888877                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++|..+|.|+||...++...+.+. .....+.=+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.+
T Consensus       118 ----gtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  118 ----GTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ----ceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence                9999999999999999999999887775 35567888999999999999999999999999998888999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      +++=.|.|+|+.++++.  |+|++||..+++++.++.+. .....++.++..+..++.+. .++.+++-+..+++.....
T Consensus       193 ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~-~e~~~~~~~~~sgKVv~~~  271 (399)
T KOG0296|consen  193 CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN-SEGVACGVNNGSGKVVNCN  271 (399)
T ss_pred             cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc-CCccEEEEccccceEEEec
Confidence            99999999999999998  99999999999999888633 34566788888887777766 6888888877776633100


Q ss_pred             ------eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccCCceEEeeecccCccccccc
Q 008058          239 ------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       239 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                            ......+....+....++     ..=...|+|+.||+|-|||....+..  ..++.......    |-+ .+  
T Consensus       272 n~~~~~l~~~~e~~~esve~~~~s-----s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~----w~~-t~--  339 (399)
T KOG0296|consen  272 NGTVPELKPSQEELDESVESIPSS-----SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLK----WLN-TD--  339 (399)
T ss_pred             CCCCccccccchhhhhhhhhcccc-----cccchhhcccccceEEEEecccchhheeccCCCceEEEE----EcC-cc--
Confidence                  000112223333334443     34467788899999999998765433  33333322222    233 23  


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                        ++++++.+|.++.||        .....+.-++.||...|..++.+||++++ +|+|.|++.++.++
T Consensus       340 --~l~t~c~~g~v~~wD--------aRtG~l~~~y~GH~~~Il~f~ls~~~~~v-vT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  340 --YLLTACANGKVRQWD--------ARTGQLKFTYTGHQMGILDFALSPQKRLV-VTVSDDNTALVFEV  397 (399)
T ss_pred             --hheeeccCceEEeee--------ccccceEEEEecCchheeEEEEcCCCcEE-EEecCCCeEEEEec
Confidence              899999999888866        33445556889999999999999999999 99999999999876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.2e-31  Score=224.67  Aligned_cols=249  Identities=17%  Similarity=0.318  Sum_probs=209.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|+++  .|+-||+|.++|+.|.+|++|+...|.+++++.+|...+.....+.+                       
T Consensus        16 ~qgaV~av--ryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-----------------------   70 (307)
T KOG0316|consen   16 AQGAVRAV--RYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-----------------------   70 (307)
T ss_pred             cccceEEE--EEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-----------------------
Confidence            56899555  99999999999999999999999999999999999988877666655                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--SLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~  159 (579)
                          +..+++|+.|..|.+||+.+|+...++ .+|.+.|+.+.|+.+...+++|+-|.++++||.++.  ++++.+....
T Consensus        71 ----nskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~  145 (307)
T KOG0316|consen   71 ----NSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK  145 (307)
T ss_pred             ----ccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence                677999999999999999999999777 789999999999999999999999999999999865  6888888888


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      +.|.++..+  +..+++|+  |+++.||++.|+.....-+  .||+++.|+++++..++++ -|+++++.|-.+++... 
T Consensus       146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~-l~stlrLlDk~tGklL~-  219 (307)
T KOG0316|consen  146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASS-LDSTLRLLDKETGKLLK-  219 (307)
T ss_pred             CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEee-ccceeeecccchhHHHH-
Confidence            899999886  56788887  9999999999987766654  5799999999999999887 69999999999988552 


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                       ...-.......+.|. +.     ....++++|++||.+++||+....++......
T Consensus       220 -sYkGhkn~eykldc~-l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~  268 (307)
T KOG0316|consen  220 -SYKGHKNMEYKLDCC-LN-----QSDTHVFSGSEDGKVYFWDLVDETQISKLSVV  268 (307)
T ss_pred             -Hhcccccceeeeeee-ec-----ccceeEEeccCCceEEEEEeccceeeeeeccC
Confidence             111112233334433 33     56789999999999999999988877655443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=9.7e-33  Score=248.16  Aligned_cols=277  Identities=16%  Similarity=0.228  Sum_probs=226.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .|+.|  |...+++|..|++|+|||..+-.+...+.+|.+.+.++.|.                          
T Consensus       197 skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------------------------  246 (499)
T KOG0281|consen  197 SKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------------------------  246 (499)
T ss_pred             CCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--------------------------
Confidence            4556  55566  55679999999999999999999999898888777655553                          


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST  159 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~  159 (579)
                         ...+++|+.|.+|++||.++|+++..+. +|...|..+.|+  +.++++++.|.++.+||+....   +.+.+.+|.
T Consensus       247 ---~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr  320 (499)
T KOG0281|consen  247 ---ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR  320 (499)
T ss_pred             ---ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh
Confidence               5689999999999999999999997774 799999999995  5599999999999999998654   344578899


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..|+.+.|+  .+++++++  .+|++|++.+++.++++.+|...|.++.+  .++++++|+ .|.+|++||+..+..   
T Consensus       321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGS-SDntIRlwdi~~G~c---  392 (499)
T KOG0281|consen  321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIECGAC---  392 (499)
T ss_pred             hheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecC-CCceEEEEeccccHH---
Confidence            999999996  56999888  79999999999999999999999988887  477888877 699999999999974   


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                        ...++.+...+.++-|       |.+.|++|..||+|++||+..+..-+...               +     .    
T Consensus       393 --LRvLeGHEeLvRciRF-------d~krIVSGaYDGkikvWdl~aaldpra~~---------------~-----~----  439 (499)
T KOG0281|consen  393 --LRVLEGHEELVRCIRF-------DNKRIVSGAYDGKIKVWDLQAALDPRAPA---------------S-----T----  439 (499)
T ss_pred             --HHHHhchHHhhhheee-------cCceeeeccccceEEEEecccccCCcccc---------------c-----c----
Confidence              4567788889999988       46889999999999999987765322110               0     0    


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                            -+..++..|++.|..+.|  |...+ +++++|.+|.+|+.-|
T Consensus       440 ----------------------~Cl~~lv~hsgRVFrLQF--D~fqI-vsssHddtILiWdFl~  478 (499)
T KOG0281|consen  440 ----------------------LCLRTLVEHSGRVFRLQF--DEFQI-ISSSHDDTILIWDFLN  478 (499)
T ss_pred             ----------------------hHHHhhhhccceeEEEee--cceEE-EeccCCCeEEEEEcCC
Confidence                                  111234457777888766  55667 9999999999999854

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.1e-31  Score=239.16  Aligned_cols=284  Identities=20%  Similarity=0.289  Sum_probs=225.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -|..|||||+||++|+.||-|.|||..+|+....++-.....    |      -..+..+.|+.|...         ...
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~----f------MMmd~aVlci~FSRD---------sEM  277 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN----F------MMMDDAVLCISFSRD---------SEM  277 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc----e------eecccceEEEeeccc---------HHH
Confidence            355999999999999999999999999998765443100000    0      001223444444332         678


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.||.|++|.+.+|.++.++..+|+.+|+|+.|+.|+..+++++.|.++++.-+.+|++++.|++|...|+...|+
T Consensus       278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            99999999999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +||..+++++  |+|++|+.++.+++.+|+  +...+|.++..-|.+ ..++.|. ..+++++.++...-..    .+..
T Consensus       358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQvVr----sfsS  432 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQVVR----SFSS  432 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccceEEe----eecc
Confidence            9999999998  999999999999999886  445678888777754 4677775 6889999998765322    1111


Q ss_pred             --ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          244 --EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       244 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                        ...+..+. ++.+     |.|.++.+.++|+.++.|...+|..-+                                 
T Consensus       433 GkREgGdFi~-~~lS-----pkGewiYcigED~vlYCF~~~sG~LE~---------------------------------  473 (508)
T KOG0275|consen  433 GKREGGDFIN-AILS-----PKGEWIYCIGEDGVLYCFSVLSGKLER---------------------------------  473 (508)
T ss_pred             CCccCCceEE-EEec-----CCCcEEEEEccCcEEEEEEeecCceee---------------------------------
Confidence              12233444 4444     899999999999999999876654321                                 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                            ++..|+..++.++-.|...+| +|-|+|+..++|.
T Consensus       474 ----------------------tl~VhEkdvIGl~HHPHqNll-AsYsEDgllKLWk  507 (508)
T KOG0275|consen  474 ----------------------TLPVHEKDVIGLTHHPHQNLL-ASYSEDGLLKLWK  507 (508)
T ss_pred             ----------------------eeecccccccccccCcccchh-hhhcccchhhhcC
Confidence                                  344677778888888888889 9999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=5.5e-29  Score=235.79  Aligned_cols=321  Identities=15%  Similarity=0.136  Sum_probs=243.3

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec---cccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      =|++  +.|||||++||+++.||++.+||-.+|+.+.++.   .|.+.+..                  +.|.|.     
T Consensus       192 FV~~--VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa------------------lsWsPD-----  246 (603)
T KOG0318|consen  192 FVNC--VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA------------------LSWSPD-----  246 (603)
T ss_pred             ceee--EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE------------------EEECCC-----
Confidence            4644  4999999999999999999999999999999987   55555554                  445443     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +..+++++.|.+++|||+.+++++.++..+..  +.-.++.|-  +..|++.+.+|++..++...+...+.+.+|.
T Consensus       247 ----s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn  320 (603)
T KOG0318|consen  247 ----STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN  320 (603)
T ss_pred             ----CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence                77899999999999999999999888765544  445566664  6689999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-----------E--------------------Ee-----------
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-----------Q--------------------KF-----------  195 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-----------~--------------------~~-----------  195 (579)
                      ..|+++..+|++++|++|+  |.|.-||..++..-           .                    .+           
T Consensus       321 K~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~  400 (603)
T KOG0318|consen  321 KSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE  400 (603)
T ss_pred             cceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence            9999999999999999999  99999998544210           0                    00           


Q ss_pred             -------------------------------ecCC--------CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          196 -------------------------------SGHP--------GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       196 -------------------------------~~h~--------~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                                                     +.+.        -...+++++|++..++.++ .|+.|++|.+...... 
T Consensus       401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG-~Dgkvhvysl~g~~l~-  478 (603)
T KOG0318|consen  401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG-QDGKVHVYSLSGDELK-  478 (603)
T ss_pred             eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec-ccceEEEEEecCCccc-
Confidence                                           0000        1135678889999999988 7999999999887643 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC-ceEEeeecccCcccccccchhhh
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-TKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                        .......+...++++.++     ||+.+||++...+.+.+||..+.+.....-. +.-.+.+.. ++|+.+    .++
T Consensus       479 --ee~~~~~h~a~iT~vayS-----pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~a-WsP~n~----~vA  546 (603)
T KOG0318|consen  479 --EEAKLLEHRAAITDVAYS-----PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVA-WSPNNK----LVA  546 (603)
T ss_pred             --ceeeeecccCCceEEEEC-----CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEE-eCCCce----EEE
Confidence              122233455567888888     9999999999999999999998876322211 333344444 788877    899


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +|+.|..+.+|..     . ..... ......|...|..+.|-.+...  +|.++|..||+|++
T Consensus       547 TGSlDt~Viiysv-----~-kP~~~-i~iknAH~~gVn~v~wlde~tv--vSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  547 TGSLDTNVIIYSV-----K-KPAKH-IIIKNAHLGGVNSVAWLDESTV--VSSGQDANIKVWNV  601 (603)
T ss_pred             eccccceEEEEEc-----c-Chhhh-eEeccccccCceeEEEecCceE--EeccCcceeEEecc
Confidence            9999876554321     1 11111 2222358888999999877665  57778999999987

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=5.1e-30  Score=239.74  Aligned_cols=247  Identities=13%  Similarity=0.268  Sum_probs=214.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+.+|..||+|+.||.++||+. +|.++.++-.|.+++..+.|+..                         
T Consensus       236 kdV--T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~-------------------------  287 (524)
T KOG0273|consen  236 KDV--TSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKK-------------------------  287 (524)
T ss_pred             CCc--ceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCC-------------------------
Confidence            467  45599999999999999999999996 57777788777776665555544                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        +++|++++.|+++.+||..+++...++ .-|..+-.++.|-.+ ..|++++.|+.|+++-+....++.++.+|.++|.
T Consensus       288 --G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~  363 (524)
T KOG0273|consen  288 --GTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN  363 (524)
T ss_pred             --CCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceE
Confidence              899999999999999999999988666 458888788888654 4689999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---------CEEEEEecCCCeEEEEEcCCC
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---------KYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---------~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ++.|+|.|.+|++++  ++++||+.........+.+|...|..+.|+|+|         ..+++++ .|++|++||+..+
T Consensus       364 alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas-~dstV~lwdv~~g  442 (524)
T KOG0273|consen  364 ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS-FDSTVKLWDVESG  442 (524)
T ss_pred             EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee-cCCeEEEEEccCC
Confidence            999999999999999  999999999988999999999999999999964         3577777 5999999999998


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      .     ++.++..+...+..+.|+     |+|+++|+|+.||.|++|+.++++..+.....
T Consensus       443 v-----~i~~f~kH~~pVysvafS-----~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~  493 (524)
T KOG0273|consen  443 V-----PIHTLMKHQEPVYSVAFS-----PNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT  493 (524)
T ss_pred             c-----eeEeeccCCCceEEEEec-----CCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence            7     446675666667778888     99999999999999999999999988876654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=6e-31  Score=246.94  Aligned_cols=283  Identities=11%  Similarity=0.120  Sum_probs=230.2

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..|.+  +.|.| .+.+|++|+.|+.|+||++.. ++++.+|.+|..++..+.|+.+                       
T Consensus       215 kgvsa--i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~-----------------------  269 (503)
T KOG0282|consen  215 KGVSA--IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNC-----------------------  269 (503)
T ss_pred             cccch--hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcccc-----------------------
Confidence            44533  48999 889999999999999999876 8999999999999998888887                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                          +..+++++-|+.|++||+++|+++.++..  ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..|-+
T Consensus       270 ----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg  343 (503)
T KOG0282|consen  270 ----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG  343 (503)
T ss_pred             ----CCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh
Confidence                88899999999999999999999988743  3568999999998 7799999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      .|..+.|-++|+.+++++  ++++||+.+..-.++... .+.....++..+|++++++.-+ .|+.|.++.+...-....
T Consensus       344 ~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs-~dN~i~ifs~~~~~r~nk  422 (503)
T KOG0282|consen  344 AILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS-MDNYIAIFSTVPPFRLNK  422 (503)
T ss_pred             heeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc-cCceEEEEecccccccCH
Confidence            999999999999999998  899999999876655442 2334566899999999999887 799999999765543322


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                      ...+.-..-...-.-+.|+     |||.+|++|+.||.+.+||.++.+.+.                             
T Consensus       423 kK~feGh~vaGys~~v~fS-----pDG~~l~SGdsdG~v~~wdwkt~kl~~-----------------------------  468 (503)
T KOG0282|consen  423 KKRFEGHSVAGYSCQVDFS-----PDGRTLCSGDSDGKVNFWDWKTTKLVS-----------------------------  468 (503)
T ss_pred             hhhhcceeccCceeeEEEc-----CCCCeEEeecCCccEEEeechhhhhhh-----------------------------
Confidence            2223222122222335565     999999999999999999987765543                             


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                ++..|.+.++.+.|.|--.--.+||+.||.|++|+
T Consensus       469 --------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  469 --------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             --------------------------ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                                      23356667888888886654338999999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=4.2e-31  Score=227.58  Aligned_cols=279  Identities=13%  Similarity=0.128  Sum_probs=234.5

Q ss_pred             CCCcccceEEEEcc---CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            2 GSSNIRDILTSFSP---ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         2 ~~~~V~~~~~~fs~---dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ++-||  +.++|||   +|-+|++++.||.-.+-+-++|..+.+|.+|.+.+.+.....+                    
T Consensus        13 htrpv--vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~n--------------------   70 (334)
T KOG0278|consen   13 HTRPV--VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKN--------------------   70 (334)
T ss_pred             CCcce--eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCch--------------------
Confidence            35688  7779986   8889999999999999999999999999999988876665544                    


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA  157 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~  157 (579)
                             ....++++.|-+-++||..+|..+..+  .|.--|.+++|+.|.++|++|+.+..+++||++..+ +...+.+
T Consensus        71 -------a~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   71 -------ATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             -------hhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence                   455688899999999999999988776  477889999999999999999999999999997653 5667899


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |.+.|..+.|....+.++++.  ++|++||.++++.+.++. ...+|+++.++++|+++.++  ..+.|..||..+-...
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLL  218 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe--cCceeEEeccccccce
Confidence            999999999999888888866  999999999999999887 67889999999999987664  4788999999886643


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                           ....- ...+......     |+...+++|+.|+.++.||..+++.+..+                         
T Consensus       219 -----Ks~k~-P~nV~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------------------  262 (334)
T KOG0278|consen  219 -----KSYKM-PCNVESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------------------  262 (334)
T ss_pred             -----eeccC-cccccccccc-----CCCceEEecCcceEEEEEeccCCceeeec-------------------------
Confidence                 22222 2233445554     89999999999999999999988765321                         


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   ..+|.++|.++.|||||..- +|||+|+++++|...
T Consensus       263 -----------------------------nkgh~gpVhcVrFSPdGE~y-AsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  263 -----------------------------NKGHFGPVHCVRFSPDGELY-ASGSEDGTIRLWQTT  297 (334)
T ss_pred             -----------------------------ccCCCCceEEEEECCCCcee-eccCCCceEEEEEec
Confidence                                         13788999999999999999 999999999999763

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=238.61  Aligned_cols=434  Identities=15%  Similarity=0.190  Sum_probs=289.2

Q ss_pred             CcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|  -+++|||... -+|+.+ .-++.||+..+......+......+.+..|..+                        
T Consensus        27 ~~v--ssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D------------------------   79 (487)
T KOG0310|consen   27 NSV--SSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD------------------------   79 (487)
T ss_pred             Ccc--eeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecC------------------------
Confidence            567  4459999554 355444 347999998877776666544455555555544                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         |.++++|...|.|++||+.+...+ +.+.+|+.+|..+.|+|+++ .+++|+.|+.+++||+.+......+.+|.+.
T Consensus        80 ---G~LlaaGD~sG~V~vfD~k~r~iL-R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   80 ---GRLLAAGDESGHVKVFDMKSRVIL-RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             ---CeEEEccCCcCcEEEeccccHHHH-HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence               999999999999999996654444 44578999999999999655 5888889999999999988876689999999


Q ss_pred             eeEEEEccCC-CEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDG-KMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      |.|.+|+|-. .++++|+  |.|++||.+.. ..+.++. |..+|..+.+-|.|..++++|  ...|++||+-++...  
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~ql--  230 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQL--  230 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCcee--
Confidence            9999999954 5778888  99999999987 6677775 999999999999999999886  578999999966533  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                        +.....+...++|..+.     .++..|++++.||.+++||..+.+.+...+                          
T Consensus       231 --l~~~~~H~KtVTcL~l~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--------------------------  277 (487)
T KOG0310|consen  231 --LTSMFNHNKTVTCLRLA-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--------------------------  277 (487)
T ss_pred             --hhhhhcccceEEEEEee-----cCCceEeecccccceEEEEccceEEEEeee--------------------------
Confidence              22334456667788887     688999999999999999976554432111                          


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeeceeeeccCCccccccC
Q 008058          318 KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVTALDRANAEDAVLP  397 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~~~~~~~~~~~~~~  397 (579)
                                                    -.++|.+++.|||++.+ +.|-.++.+.+-...  ++.   ........+
T Consensus       278 ------------------------------~~~pvLsiavs~dd~t~-viGmsnGlv~~rr~~--~k~---k~s~~~~~r  321 (487)
T KOG0310|consen  278 ------------------------------YPGPVLSIAVSPDDQTV-VIGMSNGLVSIRRRE--VKK---KPSKEPKRR  321 (487)
T ss_pred             ------------------------------cccceeeEEecCCCceE-EEecccceeeeehhh--ccc---CCCcccccc
Confidence                                          12378999999999998 777777776555321  110   000000000


Q ss_pred             CccccchhhhhhccccCCCCccccccccccchhhhhhhhccCcccccccCCcCCC-HHHHHHhcCCCCCCCCCCCCchhh
Q 008058          398 LPKILDSYDKKNRHQNLSSDLDEVMTDVVDSESQAKFMEIKDDKVEVEADSQTVC-MEDRLRSLGILSNKDDLLSNSALE  476 (579)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~~  476 (579)
                      ..+. .....+.++.                   ....+.+ +.-..+.+...++ ++.+|....             ..
T Consensus       322 ~~r~-~~~~v~~r~~-------------------~~~~~~d-div~n~~~r~~L~~~Dk~Lk~F~-------------~k  367 (487)
T KOG0310|consen  322 ADRS-DGFFVKVRGQ-------------------NYKGQKD-DIVVNEVKRLKLTYFDKRLKQFK-------------HK  367 (487)
T ss_pred             cccc-ccceEeeecc-------------------ccccccc-eeEeccccccCCchHHHHHhhhh-------------HH
Confidence            0000 0000000000                   0000000 0000000000111 111111111             11


Q ss_pred             hhhcccee----------ecccC-ChhhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCC
Q 008058          477 ATLFNGID----------FETNI-PVKKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQ  545 (579)
Q Consensus       477 ~~l~~~l~----------l~~~~-~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~s~  545 (579)
                      .+|...++          +++.+ -.-.+...+....-.-+.+||.||.+ .-+.+.-...++.|+..+|-..+.-+...
T Consensus       368 kALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~-~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s  446 (487)
T KOG0310|consen  368 KALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVK-NLTVVRFASILMEVVSVILDLYARDIEGS  446 (487)
T ss_pred             HHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHhhhccC
Confidence            11211110          11111 12366777777888889999999995 44666678899999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHhh--hhhhhhhceeeeEe
Q 008058          546 ESLTPMLSSLYKVRKKKL--FASAFTCFILLYLF  577 (579)
Q Consensus       546 ~~l~~~l~~l~~~~~~r~--~~~~~~~~~~~~~~  577 (579)
                      |.+...+..|...+++-+  +..++...+-|.||
T Consensus       447 ~~l~k~i~~L~~~V~~Ev~~q~ellr~~G~ldmL  480 (487)
T KOG0310|consen  447 PMLAKLIQALRGKVEQEVRVQKELLRLIGMLDML  480 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877  55555444444433

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-30  Score=233.90  Aligned_cols=237  Identities=19%  Similarity=0.319  Sum_probs=208.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..|  ..++|+..|+++|+++.|=.+++||.++ .+++....+|...+.++.|-|.                        
T Consensus       151 ~sv--~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~------------------------  204 (406)
T KOG0295|consen  151 DSV--FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPL------------------------  204 (406)
T ss_pred             cce--eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEec------------------------
Confidence            447  4559999999999999998899999876 4555555555555554444443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.+|++++.|.+|+.|++.+|.++.++ .+|..-|..+..+.||..+++|+.|.+|++|-+.++++...++.|..+|
T Consensus       205 ---gd~ilS~srD~tik~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  205 ---GDHILSCSRDNTIKAWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             ---CCeeeecccccceeEEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence               789999999999999999999999777 6899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccC---------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          163 SCMAVSSD---------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       163 ~~l~~~p~---------------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      .|++|.|.               ++++.+++  ++|++||+.++.++.++.+|...|..++|+|.|+||++++ +|++++
T Consensus       281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca-DDktlr  359 (406)
T KOG0295|consen  281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA-DDKTLR  359 (406)
T ss_pred             EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe-cCCcEE
Confidence            99999863               25788888  8999999999999999999999999999999999999998 799999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      +||+++.+     |..++..+..++.+..|.     .+..++++|+-|-++++|..
T Consensus       360 vwdl~~~~-----cmk~~~ah~hfvt~lDfh-----~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  360 VWDLKNLQ-----CMKTLEAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEEeccce-----eeeccCCCcceeEEEecC-----CCCceEEeccccceeeeeec
Confidence            99999987     556777888899999997     66779999999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.5e-30  Score=239.12  Aligned_cols=240  Identities=15%  Similarity=0.183  Sum_probs=199.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++||++  .||++|.++++|+.+|.|++|+..- ..+..++.                 |....++++++.|.     
T Consensus       137 HDs~Vr~m--~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~a-----------------hh~eaIRdlafSpn-----  191 (464)
T KOG0284|consen  137 HDSPVRTM--KWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQA-----------------HHAEAIRDLAFSPN-----  191 (464)
T ss_pred             hcccceeE--EEccCCCEEEEcCCCceEEecccch-hhhHHhhH-----------------hhhhhhheeccCCC-----
Confidence            56899666  9999999999999999999999753 33333443                 33344445555543     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          ...+++|+.||.|+|||....+....+ .+|...|.++.|+|....+++++.|..|++||.++|.++.++.+|+..
T Consensus       192 ----DskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt  266 (464)
T KOG0284|consen  192 ----DSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT  266 (464)
T ss_pred             ----CceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce
Confidence                566999999999999999887766444 799999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |..+.|+|++++|++++  ..+++||+++.+.+..+.+|...|+++.|+|-..-|++++..||.|..|.+...+..   .
T Consensus       267 Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~  343 (464)
T KOG0284|consen  267 VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---G  343 (464)
T ss_pred             EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccc---c
Confidence            99999999999999999  799999999999999999999999999999976655555558999999999854433   2


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      .... .+...+..+.+.     |-|..|++|+.|.++++|.
T Consensus       344 ~i~~-AHd~~iwsl~~h-----PlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  344 EIPP-AHDGEIWSLAYH-----PLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             CCCc-ccccceeeeecc-----ccceeEeecCCCcceeeec
Confidence            2223 344455566666     9999999999999999995

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.6e-29  Score=250.99  Aligned_cols=258  Identities=16%  Similarity=0.199  Sum_probs=225.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++.|+.+  +|+|.-.+++++--.|.|++||.+=+.++..|..|.+++..+.|++.                        
T Consensus         9 SsRvKgl--sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~------------------------   62 (1202)
T KOG0292|consen    9 SSRVKGL--SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT------------------------   62 (1202)
T ss_pred             cccccce--ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC------------------------
Confidence            4567667  99999999999999999999999999999999999999999999887                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ..++++|+.|..|++|+..+.+++.++ .||.+-|+.+.|++.-.+|+++|.|.+|+||+..+++++..+.+|...|
T Consensus        63 ---qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYV  138 (1202)
T KOG0292|consen   63 ---QPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYV  138 (1202)
T ss_pred             ---CCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEE
Confidence               788999999999999999999999887 5899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCC---------------------------e--eeEEeecCCCCEEEEEEecCC
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDH---------------------------K--KMQKFSGHPGAVRFMTFSDNG  211 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~---------------------------~--~~~~~~~h~~~v~~l~~~~~~  211 (579)
                      .|..|+|....+++++  .+|+|||+..-                           .  ....+.||...|+.++|+|.-
T Consensus       139 McAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  139 MCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             EeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc
Confidence            9999999999999999  89999998421                           0  013457999999999999999


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+++++ +|+.|++|.+...+..   .+-+...|-..++++-|.     |....|++.++|++|+|||+.....+++..
T Consensus       219 pliVSG~-DDRqVKlWrmnetKaW---EvDtcrgH~nnVssvlfh-----p~q~lIlSnsEDksirVwDm~kRt~v~tfr  289 (1202)
T KOG0292|consen  219 PLIVSGA-DDRQVKLWRMNETKAW---EVDTCRGHYNNVSSVLFH-----PHQDLILSNSEDKSIRVWDMTKRTSVQTFR  289 (1202)
T ss_pred             ceEEecC-CcceeeEEEeccccce---eehhhhcccCCcceEEec-----CccceeEecCCCccEEEEecccccceeeee
Confidence            9999988 7999999999876533   233444555666777776     888999999999999999999888887775


Q ss_pred             CceEEeee
Q 008058          292 ATKILSSS  299 (579)
Q Consensus       292 ~~~~~~~~  299 (579)
                      ....+...
T Consensus       290 rendRFW~  297 (1202)
T KOG0292|consen  290 RENDRFWI  297 (1202)
T ss_pred             ccCCeEEE
Confidence            55544443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-27  Score=214.42  Aligned_cols=250  Identities=16%  Similarity=0.196  Sum_probs=202.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.|  .++.|+++|+++++++.|.+++|||..+|.++.++..+...+....|...                        
T Consensus        14 ~~~i--~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~------------------------   67 (311)
T KOG1446|consen   14 NGKI--NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHH------------------------   67 (311)
T ss_pred             CCce--eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecC------------------------
Confidence            4667  45599999999999999999999999999999999877766666666544                        


Q ss_pred             ccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           83 KLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         ...++.++.  |.+|+..++.+++.+ +++.||...|++++.+|-+..+++++.|++|++||++..++...+.....
T Consensus        68 ---~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~  143 (311)
T KOG1446|consen   68 ---SNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR  143 (311)
T ss_pred             ---CceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence               444555555  677999999999998 55689999999999999999999999999999999998887776654443


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                        ..++|+|+|-++|++.  +.|++||++.-  .+..+|.   +-....+.|.|+|||++++.+. ..+.+++.|.-.|.
T Consensus       144 --pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  144 --PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT  220 (311)
T ss_pred             --cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc
Confidence              3579999999999998  58999999863  3455553   3366789999999999999987 68999999999987


Q ss_pred             cccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          234 KQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       234 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      ..   ..+... ......-..+|+     ||++++++|+.||+|++|+++++..+....+.
T Consensus       221 ~~---~tfs~~~~~~~~~~~a~ft-----Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  221 VK---STFSGYPNAGNLPLSATFT-----PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             Ee---eeEeeccCCCCcceeEEEC-----CCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            54   223222 222233456676     99999999999999999999999988776654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.7e-28  Score=241.49  Aligned_cols=274  Identities=18%  Similarity=0.264  Sum_probs=223.5

Q ss_pred             eEEEE-ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSF-SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~f-s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +.|+| .|+.++||.+++.+.+|+|+..+..+. .+.+|...+.++.                 .|..          +.
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~-----------------~~~~----------g~  378 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLD-----------------VWSS----------GD  378 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeee-----------------eccc----------Cc
Confidence            34454 677899999999999999999888776 5666655554332                 2222          67


Q ss_pred             EEEEEECCCeEEEEEccCCeEE---EEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----ee----eE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLK---WRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----LL----GK  154 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~---~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~-----~~----~~  154 (579)
                      +|++|+.|.++++|.+..+...   .....+|++.|.+++++..+ .+|+++|.|+++++|++...+     .+    .+
T Consensus       379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence            8999999999999988544321   12236899999999997755 468999999999999997521     11    13


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...|...|+|++++|+.+++++|+  .+.+||++...+...++.||...|.++.|+|..+.+++++ .|++|+||.+.+.
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S-gD~TvKIW~is~f  537 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS-GDKTVKIWSISTF  537 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc-CCceEEEEEeccc
Confidence            456899999999999999999999  8999999999999999999999999999999999999987 7999999999987


Q ss_pred             ccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058          233 KKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       233 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      .     |..++. |...++.+.+.      .+|..|++++.||-|++|++++.+.+.+                      
T Consensus       538 S-----ClkT~eGH~~aVlra~F~------~~~~qliS~~adGliKlWnikt~eC~~t----------------------  584 (775)
T KOG0319|consen  538 S-----CLKTFEGHTSAVLRASFI------RNGKQLISAGADGLIKLWNIKTNECEMT----------------------  584 (775)
T ss_pred             e-----eeeeecCccceeEeeeee------eCCcEEEeccCCCcEEEEeccchhhhhh----------------------
Confidence            5     667887 55555555555      5899999999999999999887765432                      


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                       +.+|...|+.++.+|++.++ +||+.|+.+.+|.
T Consensus       585 ---------------------------------lD~H~DrvWaL~~~~~~~~~-~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  585 ---------------------------------LDAHNDRVWALSVSPLLDMF-VTGGGDGRIIFWK  617 (775)
T ss_pred             ---------------------------------hhhccceeEEEeecCcccee-EecCCCeEEEEee
Confidence                                             33788899999999999998 9999999999995

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=6.9e-28  Score=209.90  Aligned_cols=276  Identities=13%  Similarity=0.104  Sum_probs=216.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.+|++|+.|..+.+|-...|+.+.++ .||++.|+|+..+-+.+++++|+.|.++++||+.+|+++.+++ ...+|..+
T Consensus        22 GDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~   99 (327)
T KOG0643|consen   22 GDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRV   99 (327)
T ss_pred             CcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEE
Confidence            999999999999999999999999777 7999999999999999999999999999999999999999998 45689999


Q ss_pred             EEccCCCEEEEEC-------CeEEEEECC-------CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          166 AVSSDGKMLATAA-------GQLKTFNCS-------DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       166 ~~~p~g~~l~~~~-------g~i~vwd~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .|+++|++++...       +.|.++|++       ..+++..+..+.+.++.+.|.|-+++++++. .||.|.+||+++
T Consensus       100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh-e~G~is~~da~~  178 (327)
T KOG0643|consen  100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH-EDGSISIYDART  178 (327)
T ss_pred             eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec-CCCcEEEEEccc
Confidence            9999999888765       589999998       4456888888999999999999999999987 799999999999


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      ++..    +.....+...++.+.++     ++..++++++.|.+.++||..+.+.+++.....+..+..  ++|...   
T Consensus       179 g~~~----v~s~~~h~~~Ind~q~s-----~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa--isP~~d---  244 (327)
T KOG0643|consen  179 GKEL----VDSDEEHSSKINDLQFS-----RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA--ISPLLD---  244 (327)
T ss_pred             Ccee----eechhhhcccccccccc-----CCcceEEecccCccceeeeccceeeEEEeeeccccccee--cccccc---
Confidence            8643    23334445567777777     999999999999999999999999888765444332222  233322   


Q ss_pred             hhhhhcccccee-cCC---ceEEE-EEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          312 AAIFAAKLQDIV-KPA---SVHTF-VAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       312 ~~i~~~~~~~~~-~~~---~~~~~-~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      ..|+.|..+... ..-   .|+.- -.+.......+..+.+|.+++.+++|+|||+.. +||++|+.+++--.
T Consensus       245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY-sSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY-SSGGEDGYVRLHHF  316 (327)
T ss_pred             eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc-ccCCCCceEEEEEe
Confidence            034444333210 000   00000 000011124556788999999999999999999 99999999998765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=5.6e-30  Score=230.46  Aligned_cols=238  Identities=14%  Similarity=0.251  Sum_probs=197.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++.|  +|+.|  |.+.+++|+.|.+|+|||+.+|+++.++-.|...+..+.|+                         
T Consensus       236 HtGSV--LCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~-------------------------  286 (499)
T KOG0281|consen  236 HTGSV--LCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-------------------------  286 (499)
T ss_pred             CCCcE--Eeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe-------------------------
Confidence            46788  87777  56699999999999999999999999888777666655554                         


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +.++++++.|.+|.+||+.....  ..+.+.||...|+.+.|  +.+++++++.|.+|++|++.+++.++++.+|.
T Consensus       287 ----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHk  360 (499)
T KOG0281|consen  287 ----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK  360 (499)
T ss_pred             ----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhccc
Confidence                67899999999999999986542  33456799999999999  56799999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-  236 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-  236 (579)
                      .+|.|+.+  .|+++++|+  ++|++||+..|.+++.+.||+.-|.++.|.  .+.+++|+ .||+|++||+..+.... 
T Consensus       361 RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa-YDGkikvWdl~aaldpra  435 (499)
T KOG0281|consen  361 RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA-YDGKIKVWDLQAALDPRA  435 (499)
T ss_pred             ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc-ccceEEEEecccccCCcc
Confidence            99999887  488999998  899999999999999999999999999995  55789988 79999999998765331 


Q ss_pred             ---ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          237 ---ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       237 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                         ..|+..+..+...+-...|       |...|++++.|.+|.|||..++-.
T Consensus       436 ~~~~~Cl~~lv~hsgRVFrLQF-------D~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  436 PASTLCLRTLVEHSGRVFRLQF-------DEFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             cccchHHHhhhhccceeEEEee-------cceEEEeccCCCeEEEEEcCCCCc
Confidence               2233343333333334445       568899999999999999877644

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.3e-28  Score=245.26  Aligned_cols=259  Identities=15%  Similarity=0.197  Sum_probs=191.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE---------------------------Eec--------cc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT---------------------------EFA--------DI   46 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~---------------------------~~~--------~~   46 (579)
                      +.+.|  +++.||+||+|||+||.||.|+||.+.......                           ...        +.
T Consensus       266 h~gaI--w~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  266 HKGAI--WAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             cCCcE--EEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            46789  889999999999999999999999987511100                           000        00


Q ss_pred             cc-----ccccccccccc---ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC
Q 008058           47 AS-----TETTSLYGNRL---EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG  118 (579)
Q Consensus        47 ~~-----~~~~~~~~~~~---~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~  118 (579)
                      ..     +.....|+...   ..||.+ .+-.+.|..          +++|++++.|.+|++|++...+++..+  .|.+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSK----------n~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hnd  410 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSK----------NNFLLSSSMDKTVRLWHPGRKECLKVF--SHND  410 (712)
T ss_pred             CCccccCCCccccccccchhhhhccch-hheeccccc----------CCeeEeccccccEEeecCCCcceeeEE--ecCC
Confidence            00     00111111110   124433 455677765          789999999999999999999999777  4999


Q ss_pred             CEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058          119 GVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       119 ~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~  195 (579)
                      -|+|++|+| |.+||++|+.||.|++|++...+.+.-.. -..-|++++|.|||+..++|+  |.+++|+....+....+
T Consensus       411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~  489 (712)
T KOG0283|consen  411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF  489 (712)
T ss_pred             eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence            999999999 88899999999999999998766554444 447899999999999999999  99999999887766554


Q ss_pred             ec--C------CCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcE
Q 008058          196 SG--H------PGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (579)
Q Consensus       196 ~~--h------~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      .-  |      ...|+++.|.|... .+++++ .|..|+|+|.+.....   +.+.-.+.........|+     .||++
T Consensus       490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~Asfs-----~Dgk~  560 (712)
T KOG0283|consen  490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYDGRDKDLV---HKFKGFRNTSSQISASFS-----SDGKH  560 (712)
T ss_pred             eEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEeccchhhh---hhhcccccCCcceeeeEc-----cCCCE
Confidence            21  1      12799999997544 344454 6999999999776543   333333444444556666     89999


Q ss_pred             EEEEEcCCeEEEEECCCce
Q 008058          267 VLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       267 l~s~~~dg~i~iwd~~~~~  285 (579)
                      |+++++|..|++|+.+...
T Consensus       561 IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  561 IVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             EEEeecCceEEEEeCCCCc
Confidence            9999999999999976544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.2e-28  Score=245.52  Aligned_cols=238  Identities=24%  Similarity=0.377  Sum_probs=202.4

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..|+++  +|+|||+++++++.|++|+|||+ ..+.++.++++|...+.++.|++.                        
T Consensus       204 ~~v~~~--~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~------------------------  257 (456)
T KOG0266|consen  204 RGVSDV--AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPD------------------------  257 (456)
T ss_pred             cceeee--EECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCC------------------------
Confidence            456444  99999999999999999999999 666899999999888877777776                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~  160 (579)
                         ++++++|+.|++|++||+.+++++..+ .+|.++|++++|++++++|++++.|+.|++||+.++.  +...+..+..
T Consensus       258 ---g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  258 ---GNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             ---CCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence               789999999999999999999998666 7899999999999999999999999999999999998  5677776665


Q ss_pred             C--eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE---EEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          161 G--ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV---RFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~--v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v---~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .  ++++.|+|++.+++++.  +.+++||++.+..+..+.+|...+   .+...++.++++++++ .|+.|++|++.++.
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~-~d~~v~~~~~~s~~  412 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGS-EDGSVYVWDSSSGG  412 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEe-CCceEEEEeCCccc
Confidence            5  99999999999999998  699999999999999999998753   3345567899999987 79999999999865


Q ss_pred             cccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECC
Q 008058          234 KQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ  282 (579)
Q Consensus       234 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~  282 (579)
                      ..     ..+..+ ...+....++     |...++++++  .|+.+++|..+
T Consensus       413 ~~-----~~l~~h~~~~~~~~~~~-----~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  413 IL-----QRLEGHSKAAVSDLSSH-----PTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hh-----hhhcCCCCCceeccccC-----CCcCeeeecCcCCCceEEEecCC
Confidence            33     233344 4455555565     8889999998  68899999653

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=3.2e-26  Score=228.30  Aligned_cols=312  Identities=14%  Similarity=0.177  Sum_probs=246.4

Q ss_pred             EEccCC--CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      -++|+.  +.++.|+.+|.+.+|++++++.+.+|+.+...++.+.-+|.                           -+.+
T Consensus       165 l~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa---------------------------LDVV  217 (910)
T KOG1539|consen  165 LLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA---------------------------LDVV  217 (910)
T ss_pred             EecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc---------------------------ceEE
Confidence            356654  56889999999999999999999999977766665555544                           5779


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee-----------
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR-----------  156 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-----------  156 (579)
                      ++|..+|+|.+++++.++.+..+.  | .++|++++|..||+. +++|+..|.+.+||+...+.+...+           
T Consensus       218 aiG~~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~  295 (910)
T KOG1539|consen  218 AIGLENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGAT  295 (910)
T ss_pred             EEeccCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccce
Confidence            999999999999999999998884  5 489999999999987 5666677999999997543221111           


Q ss_pred             --------------------------------------------------------------------------------
Q 008058          157 --------------------------------------------------------------------------------  156 (579)
Q Consensus       157 --------------------------------------------------------------------------------  156 (579)
                                                                                                      
T Consensus       296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~  375 (910)
T KOG1539|consen  296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ  375 (910)
T ss_pred             ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------------------------cCC------CCeeEEE
Q 008058          157 ----------------------------------------------------------------AST------KGISCMA  166 (579)
Q Consensus       157 ----------------------------------------------------------------~~~------~~v~~l~  166 (579)
                                                                                      .+.      ..+++++
T Consensus       376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~  455 (910)
T KOG1539|consen  376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC  455 (910)
T ss_pred             cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence                                                                            111      3577888


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      .++.|++.+.|.  |.|-+|++++|-...+|   +.|.++|++++...-++.+++++ .+|.++.||.......   ...
T Consensus       456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~-~~Gilkfw~f~~k~l~---~~l  531 (910)
T KOG1539|consen  456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG-ADGILKFWDFKKKVLK---KSL  531 (910)
T ss_pred             EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc-CcceEEEEecCCccee---eee
Confidence            899999999887  99999999999888888   58999999999999999999998 6999999999887633   222


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .+.+..  ...+ ..     .....++.+.+|-.|.++|..+.+..+.+.++...+.... ||++++    .+++++.|+
T Consensus       532 ~l~~~~--~~iv-~h-----r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~Dgr----WlisasmD~  598 (910)
T KOG1539|consen  532 RLGSSI--TGIV-YH-----RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGR----WLISASMDS  598 (910)
T ss_pred             ccCCCc--ceee-ee-----ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCc----EEEEeecCC
Confidence            232222  2222 22     3557788889999999999999999999988888887776 899999    999999999


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce-ecccceee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL-KSKRGRYV  379 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d-~~~~~w~~  379 (579)
                      .++.||.        ....+...+ .-..+.+++.|||+|.+| ++...| .-|++|.-
T Consensus       599 tIr~wDl--------pt~~lID~~-~vd~~~~sls~SPngD~L-AT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  599 TIRTWDL--------PTGTLIDGL-LVDSPCTSLSFSPNGDFL-ATVHVDQNGIYLWSN  647 (910)
T ss_pred             cEEEEec--------cCcceeeeE-ecCCcceeeEECCCCCEE-EEEEecCceEEEEEc
Confidence            9998762        222233333 334589999999999999 888888 66899954

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=217.14  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=215.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++.||.||.|||||+.+|.|+||+..++.....+.                     ..+..+.|....|.    
T Consensus       107 DSV--t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---------------------~e~~dieWl~WHp~----  159 (399)
T KOG0296|consen  107 DSV--TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---------------------QEVEDIEWLKWHPR----  159 (399)
T ss_pred             Cce--EEEEEccCceEEEecCCCccEEEEEcccCceEEEee---------------------cccCceEEEEeccc----
Confidence            356  778999999999999999999999999998877663                     12223445444444    


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCe
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGI  162 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v  162 (579)
                        +..|++|+.||.+..|.+..+... +++.||+.++++=.|.|+|+.++++..||+|++||+.+++++.++.... ...
T Consensus       160 --a~illAG~~DGsvWmw~ip~~~~~-kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~  236 (399)
T KOG0296|consen  160 --AHILLAGSTDGSVWMWQIPSQALC-KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL  236 (399)
T ss_pred             --ccEEEeecCCCcEEEEECCCccee-eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence              889999999999999999986444 4557899999999999999999999999999999999999998877433 367


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEec---CCCEEEEEecCCCeEEEEEc
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSD---NGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~---~~~~l~s~s~~d~~i~vwd~  229 (579)
                      .++.++..+..++.|+  +.+++-+..+++.+..+.        .+...+.++.+.|   .-+..++++ -||+|.|||+
T Consensus       237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~-vdG~i~iyD~  315 (399)
T KOG0296|consen  237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS-VDGTIAIYDL  315 (399)
T ss_pred             CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc-ccceEEEEec
Confidence            8899999999998888  788888888887766555        3555556665555   344455554 7999999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccc
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKS  309 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (579)
                      ...+.+     ....|+..++.+.+.      + ..+|++++.+|.|+.||.++|+.+....++...+-... .+++.+ 
T Consensus       316 a~~~~R-----~~c~he~~V~~l~w~------~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~-  381 (399)
T KOG0296|consen  316 AASTLR-----HICEHEDGVTKLKWL------N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKR-  381 (399)
T ss_pred             ccchhh-----eeccCCCceEEEEEc------C-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCc-
Confidence            987654     345577776666654      4 68999999999999999999999988888776666544 455555 


Q ss_pred             cchhhhhccccceecC
Q 008058          310 ATAAIFAAKLQDIVKP  325 (579)
Q Consensus       310 ~~~~i~~~~~~~~~~~  325 (579)
                         .+++++.|+..+.
T Consensus       382 ---~vvT~s~D~~a~V  394 (399)
T KOG0296|consen  382 ---LVVTVSDDNTALV  394 (399)
T ss_pred             ---EEEEecCCCeEEE
Confidence               7888888764443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.9e-28  Score=243.57  Aligned_cols=236  Identities=15%  Similarity=0.168  Sum_probs=204.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+++++--+|.|.+||.+.+.++.++ .+|.++|++++|+|++..|++|+.|-.|++|+..+.+++.++.+|-+.|..+
T Consensus        21 rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   21 RPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             CCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence            678999999999999999999999777 5799999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc-------
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS-------  236 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~-------  236 (579)
                      .|++.-.++++++  .+|+||+.++++++..++||...|.|..|+|....+++++ -|.+|+|||+..-++..       
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS-LDQTVRVWDisGLRkk~~~pg~~e  178 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS-LDQTVRVWDISGLRKKNKAPGSLE  178 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec-ccceEEEEeecchhccCCCCCCch
Confidence            9999999999999  8999999999999999999999999999999988999987 69999999986543221       


Q ss_pred             -----------------ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058          237 -----------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       237 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                                       ...-+.++.|+.-+..++|.     |.-..|++|++|..|++|.....+.             
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqVKlWrmnetKa-------------  240 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQVKLWRMNETKA-------------  240 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCcceeeEEEeccccc-------------
Confidence                             11223345666677777886     7778999999999999997532211             


Q ss_pred             cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                     |-         .+++.||.+.|.++.|.|...++ +|.|+|+++++|++
T Consensus       241 -------------------------------WE---------vDtcrgH~nnVssvlfhp~q~lI-lSnsEDksirVwDm  279 (1202)
T KOG0292|consen  241 -------------------------------WE---------VDTCRGHYNNVSSVLFHPHQDLI-LSNSEDKSIRVWDM  279 (1202)
T ss_pred             -------------------------------ee---------ehhhhcccCCcceEEecCcccee-EecCCCccEEEEec
Confidence                                           00         12567999999999999999999 99999999999999


Q ss_pred             eec
Q 008058          380 QNR  382 (579)
Q Consensus       380 ~~~  382 (579)
                      ..+
T Consensus       280 ~kR  282 (1202)
T KOG0292|consen  280 TKR  282 (1202)
T ss_pred             ccc
Confidence            754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.7e-27  Score=226.88  Aligned_cols=236  Identities=14%  Similarity=0.166  Sum_probs=198.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .-|||+-  .|=+--+++++|+.|..|+||+..+++.++.|..|..-+.++..+|.                        
T Consensus        55 ~~PvRa~--kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt------------------------  108 (794)
T KOG0276|consen   55 EVPVRAA--KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPT------------------------  108 (794)
T ss_pred             ccchhhh--eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCC------------------------
Confidence            4578666  88888899999999999999999999999999988776665555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                         ..++++++.|-.|++||.+.+=...+.++||.--|.+++|+| |.+.+++++.|++|++|.+.+..+..++++|...
T Consensus       109 ---~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG  185 (794)
T KOG0276|consen  109 ---LPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG  185 (794)
T ss_pred             ---CCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC
Confidence               567999999999999999987665566789999999999999 6678999999999999999999999999999999


Q ss_pred             eeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      |+|+++-+.|  .+|++|+  .+|+|||.++..++.++.||...|+.+.|+|.-..+++|+ +||++++|+..+-+..  
T Consensus       186 VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs-EDGTvriWhs~Ty~lE--  262 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS-EDGTVRIWNSKTYKLE--  262 (794)
T ss_pred             cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec-CCccEEEecCcceehh--
Confidence            9999998754  6999998  8999999999999999999999999999999999999987 8999999998876543  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                         .++.-....+.++...     +.+..++.|.++|.|.+
T Consensus       263 ---~tLn~gleRvW~I~~~-----k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  263 ---KTLNYGLERVWCIAAH-----KGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             ---hhhhcCCceEEEEeec-----CCCCeEEEeccCCcEEE
Confidence               1222233333444433     55666777777776544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1.8e-28  Score=217.71  Aligned_cols=303  Identities=17%  Similarity=0.172  Sum_probs=211.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+|+|+-  +|||||.++|+|+.|..|+|.|++..--...-+.                                     
T Consensus       112 K~~cR~a--afs~DG~lvATGsaD~SIKildvermlaks~~~e-------------------------------------  152 (430)
T KOG0640|consen  112 KSPCRAA--AFSPDGSLVATGSADASIKILDVERMLAKSKPKE-------------------------------------  152 (430)
T ss_pred             ccceeee--eeCCCCcEEEccCCcceEEEeehhhhhhhcchhh-------------------------------------
Confidence            4677666  9999999999999999999999762211000000                                     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~  160 (579)
                            +..+         +.+.+..+.+.+-.|..+|+++.|+|....|++++.|++|++||+......+.++.  ...
T Consensus       153 ------m~~~---------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~  217 (430)
T KOG0640|consen  153 ------MISG---------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE  217 (430)
T ss_pred             ------hccC---------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccc
Confidence                  0000         00111122233457999999999999999999999999999999875433333332  345


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      +|.++.|+|.|.++++|.  ..+++||+.+.++...-   ..|.+.|+++.+++.++..++++ .||.|++||--++++.
T Consensus       218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRCV  296 (430)
T ss_pred             eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHHH
Confidence            899999999999999998  79999999998876543   46899999999999999888887 7999999998777644


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc----eEEeeecccCcccccccc
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT----KILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  311 (579)
                         ..+.-.|.+..+....|.     .+|++|++.+.|..+++|.+.+++.+....+.    +.......+|.....   
T Consensus       297 ---~t~~~AH~gsevcSa~Ft-----kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEd---  365 (430)
T KOG0640|consen  297 ---RTIGNAHGGSEVCSAVFT-----KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTED---  365 (430)
T ss_pred             ---HHHHhhcCCceeeeEEEc-----cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccc---
Confidence               223345777788888887     89999999999999999999999988665432    111111111111111   


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                       +++.-...      .+.+...+.......-.--.||.+.+..+.-||.+.-+ ++||.|...++|.-
T Consensus       366 -yVl~pDEa------s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F-mTcsdD~raRFWyr  425 (430)
T KOG0640|consen  366 -YVLFPDEA------SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF-MTCSDDFRARFWYR  425 (430)
T ss_pred             -eEEccccc------cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce-eeecccceeeeeee
Confidence             11111110      11111111111111111235899999999999999998 99999999999975

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=4e-27  Score=204.57  Aligned_cols=249  Identities=14%  Similarity=0.261  Sum_probs=204.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|+++  +|+.+|..||+|+.|++++||+++..+......               ..||.+ .+..++|.+.+    
T Consensus        19 ~~~~v~Sv--~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~---------------~~gh~~-svdql~w~~~~----   76 (313)
T KOG1407|consen   19 HVQKVHSV--AWNCDGTKLASGSFDKTVSVWNLERDRFRKELV---------------YRGHTD-SVDQLCWDPKH----   76 (313)
T ss_pred             hhhcceEE--EEcccCceeeecccCCceEEEEecchhhhhhhc---------------ccCCCc-chhhheeCCCC----
Confidence            34677444  999999999999999999999998775443322               123322 33456676665    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++++.|..|++||...++++.++.  ..+.=.-+.|+|+|.+++.++.|..|...|.++.+.....+ ....
T Consensus        77 ----~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e  149 (313)
T KOG1407|consen   77 ----PDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE  149 (313)
T ss_pred             ----CcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence                6789999999999999999999987773  34445667899999999999999999999999888776655 3456


Q ss_pred             eeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          162 ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~-~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +..++|+.++.+++.. + |.|.|.....-+++.+++.|.....+|.|+|+|+||++|+ .|-.+.+||++..-     |
T Consensus       150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs-ADAlvSLWD~~ELi-----C  223 (313)
T KOG1407|consen  150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS-ADALVSLWDVDELI-----C  223 (313)
T ss_pred             eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecc-ccceeeccChhHhh-----h
Confidence            7888998777766554 4 8999999999999999999999999999999999999998 69999999998754     5


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ...+...+..++.+.|+     .+|++||++++|..|-|=++++|..+..+
T Consensus       224 ~R~isRldwpVRTlSFS-----~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  224 ERCISRLDWPVRTLSFS-----HDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             heeeccccCceEEEEec-----cCcceeeccCccceEEeEecccCCeEEEe
Confidence            56677788889999998     99999999999999999999988776543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=4.1e-28  Score=219.37  Aligned_cols=218  Identities=17%  Similarity=0.277  Sum_probs=192.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.++++|+.|++|+|||+.+|++..++ .||-..|..+++++-..|+++++.|+.|+.||+...+.++.+.+|-..|.|+
T Consensus       163 n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L  241 (460)
T KOG0285|consen  163 NEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL  241 (460)
T ss_pred             ceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence            789999999999999999999998766 6899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +.+|.-..|++|+  .+++|||+++...+..+.||..+|.++.+.|....+++++ .|++|++||++.++.     ..++
T Consensus       242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt-----~~tl  315 (460)
T KOG0285|consen  242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKT-----MITL  315 (460)
T ss_pred             eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCce-----eEee
Confidence            9999999999999  7999999999999999999999999999999888999987 799999999999874     3567


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccce
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      .++...+.+++..     |....+|+++.| .|+-|++..+..+.++..+...+.+....+.+      .+++|+..|.
T Consensus       316 t~hkksvral~lh-----P~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~------v~~~G~dng~  382 (460)
T KOG0285|consen  316 THHKKSVRALCLH-----PKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG------VLVSGGDNGS  382 (460)
T ss_pred             ecccceeeEEecC-----CchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc------eEEEcCCceE
Confidence            7888888888887     887888888776 79999999999998877766655554422222      6677766553

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=202.39  Aligned_cols=264  Identities=14%  Similarity=0.124  Sum_probs=213.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +++.++|+.|.+|++|++..|.++.++ .+|...|.+++.+.|+..|++|+.|..|.+||+.+|+..+.|++|.+.|+.+
T Consensus        29 GnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV  107 (307)
T KOG0316|consen   29 GNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTV  107 (307)
T ss_pred             CCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEE
Confidence            999999999999999999999999777 6899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      .|+.+...+++|+  .++++||.++.  ++++.+......|.++..+  +..+++++ .||+++.||++.+...      
T Consensus       108 ~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS-~DGtvRtydiR~G~l~------  178 (307)
T KOG0316|consen  108 RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS-VDGTVRTYDIRKGTLS------  178 (307)
T ss_pred             EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec-cCCcEEEEEeecceee------
Confidence            9999999999999  89999999864  6788888888899999886  44566665 7999999999998743      


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc-Ccccccccchhhhhcccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV-NSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~  320 (579)
                       .+.-+..++++.|+     ++++..++++.|+++++.|-.+|+.++..++++...--.+. +..    +...+++|+.|
T Consensus       179 -sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q----sdthV~sgSED  248 (307)
T KOG0316|consen  179 -SDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSED  248 (307)
T ss_pred             -hhhcCCcceeEEec-----CCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc----cceeEEeccCC
Confidence             34455678899998     99999999999999999999999999887776543221110 111    12378899998


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCC-cEEEeecCCcceeeccccceecccceee
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGE-DINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~-v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |.++.|+        .......-++..|... +..+.+.|.-.-+ +++. ++....|.-
T Consensus       249 G~Vy~wd--------Lvd~~~~sk~~~~~~v~v~dl~~hp~~~~f-~~A~-~~~~~~~~~  298 (307)
T KOG0316|consen  249 GKVYFWD--------LVDETQISKLSVVSTVIVTDLSCHPTMDDF-ITAT-GHGDLFWYQ  298 (307)
T ss_pred             ceEEEEE--------eccceeeeeeccCCceeEEeeecccCccce-eEec-CCceeceee
Confidence            8877755        2222333355556655 7888888876655 4443 456667754

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.5e-26  Score=232.76  Aligned_cols=255  Identities=15%  Similarity=0.151  Sum_probs=195.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .+++|+..+++++.+.....|+...+..+..+.... ..   .-.++...+|. ..+.++.|.|.+        +.+|++
T Consensus        27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-~~---~~~~~~l~GH~-~~V~~v~fsP~d--------~~~LaS   93 (493)
T PTZ00421         27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-KL---ASNPPILLGQE-GPIIDVAFNPFD--------PQKLFT   93 (493)
T ss_pred             cccCCCCCcEeECCceEEEEEecCCceEEeeccccc-cC---CCCCceEeCCC-CCEEEEEEcCCC--------CCEEEE
Confidence            677887778888888888899876664433222111 00   00112233553 467889998854        678999


Q ss_pred             EECCCeEEEEEccCCe-------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           92 GTGGGDVLALAVSAGQ-------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      |+.||.|++||+.++.       .+.. +.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+.+|...|.
T Consensus        94 gS~DgtIkIWdi~~~~~~~~~~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         94 ASEDGTIMGWGIPEEGLTQNISDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             EeCCCEEEEEecCCCccccccCcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            9999999999998653       2333 46899999999999975 6899999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccc
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~s~---~d~~i~vwd~~~~~~~~~  237 (579)
                      +++|+|+|++|++++  +.|++||+++++.+.++.+|.+. +..+.|.+++..+++++.   .|+.|++||++...... 
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~-  251 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY-  251 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce-
Confidence            999999999999998  89999999999999999999865 456789998888887652   47899999998764320 


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeec
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR  288 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~  288 (579)
                       ..... +....+....|+     +++.+|++++ .||.|++||+.+++.+.
T Consensus       252 -~~~~~-d~~~~~~~~~~d-----~d~~~L~lggkgDg~Iriwdl~~~~~~~  296 (493)
T PTZ00421        252 -STVDL-DQSSALFIPFFD-----EDTNLLYIGSKGEGNIRCFELMNERLTF  296 (493)
T ss_pred             -eEecc-CCCCceEEEEEc-----CCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence             11111 223344455666     8999998887 49999999998887654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=4.4e-26  Score=220.67  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=196.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|+|+++++++++.||.|++|++.+++....+..+...                  +.++.|.+.         +.+
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~------------------i~~~~~~~~---------~~~  107 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------------------VSSVAFSPD---------GRI  107 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc------------------EEEEEEcCC---------CCE
Confidence            36699999999999999999999999988777776644433                  345555543         566


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++++.+|.|.+||+.+++....+ ..|...|.++.|+|++.++++++.|+.|++||+++++.+..+..|...+.+++|+
T Consensus       108 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~  186 (289)
T cd00200         108 LSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS  186 (289)
T ss_pred             EEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEEC
Confidence            777777999999999988877666 4788999999999999888888889999999999999999999888899999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+++.+++++  +.|++||+++++.+..+..|...+.++.|+|++.++++++ .|+.+++|++..++..     ..+..+
T Consensus       187 ~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~-----~~~~~~  260 (289)
T cd00200         187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECV-----QTLSGH  260 (289)
T ss_pred             CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeE-----EEcccc
Confidence            9998888877  8999999999999988888999999999999987777765 6999999999876533     333344


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ...+..+.|+     |++.++++++.||.+++|+
T Consensus       261 ~~~i~~~~~~-----~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         261 TNSVTSLAWS-----PDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEEC-----CCCCEEEEecCCCeEEecC
Confidence            5566777787     8899999999999999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.4e-27  Score=202.93  Aligned_cols=284  Identities=14%  Similarity=0.162  Sum_probs=216.9

Q ss_pred             ceEEEEccC-CCEEEEEe-------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            8 DILTSFSPA-LDYFAICS-------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         8 ~~~~~fs~d-g~~las~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ..++.|||= .++||.+.       ..|++.|-++..++-+.++....                ..-..-.++|.+..  
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d----------------~~D~LfdV~Wse~~--   72 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD----------------TEDGLFDVAWSENH--   72 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee----------------cccceeEeeecCCC--
Confidence            346699992 33455432       36889999986555444433111                12234467787765  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                            .+.+++++.||++++||...........++|...|.++.|++ +++.+++++-|++|++||...++.+++|.+|
T Consensus        73 ------e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh  146 (311)
T KOG0277|consen   73 ------ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGH  146 (311)
T ss_pred             ------cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCC
Confidence                  778999999999999997665544455578999999999998 4556888899999999999999999999999


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ...|....|+| .++++++++  +.+++||++.......+..|...+.++.|+.-...++.++..|+.|+.||++..+. 
T Consensus       147 ~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-  225 (311)
T KOG0277|consen  147 NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-  225 (311)
T ss_pred             ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-
Confidence            99999999999 567888877  89999999875444448999999999999976555554445799999999998763 


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         +++.+..+...++-+.|++    .....|++++.|=+++|||.......                            
T Consensus       226 ---pl~eL~gh~~AVRkvk~Sp----h~~~lLaSasYDmT~riw~~~~~ds~----------------------------  270 (311)
T KOG0277|consen  226 ---PLFELNGHGLAVRKVKFSP----HHASLLASASYDMTVRIWDPERQDSA----------------------------  270 (311)
T ss_pred             ---cceeecCCceEEEEEecCc----chhhHhhhccccceEEecccccchhh----------------------------
Confidence               4677788888899999983    23467899999999999986433211                            


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceeccccee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~  378 (579)
                                                .+++.-|+..+..+.||+ ++.++ ++++.|.++++|+
T Consensus       271 --------------------------~e~~~~HtEFv~g~Dws~~~~~~v-As~gWDe~l~Vw~  307 (311)
T KOG0277|consen  271 --------------------------IETVDHHTEFVCGLDWSLFDPGQV-ASTGWDELLYVWN  307 (311)
T ss_pred             --------------------------hhhhhccceEEeccccccccCcee-eecccccceeeec
Confidence                                      112335777788888886 55667 9999999999996

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=2.7e-26  Score=203.37  Aligned_cols=238  Identities=14%  Similarity=0.211  Sum_probs=203.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  +-+.|.+|++.+++++.|.+|+.||+++|++...+++|..-++.+.  +.                       
T Consensus        89 HsgAV--M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~--p~-----------------------  141 (338)
T KOG0265|consen   89 HSGAV--MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLD--PS-----------------------  141 (338)
T ss_pred             cccee--EeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecC--cc-----------------------
Confidence            46788  5559999999999999999999999999999999987776555332  10                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                       +.+..++.+++.||++++||+++.+.+..+.  ..-+++++.|..++..+++|+-|+.|++||++.+...+++.+|.++
T Consensus       142 -rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt  218 (338)
T KOG0265|consen  142 -RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT  218 (338)
T ss_pred             -ccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc
Confidence             1136788999999999999999988876552  4568999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCC----CEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPG----AVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~----~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      |+.+..+|+|.++.+-+  .++++||++.    .+++..+.+|..    ....++|+|+++++-+++ .|+.+++||...
T Consensus       219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags-~dr~vyvwd~~~  297 (338)
T KOG0265|consen  219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS-ADRFVYVWDTTS  297 (338)
T ss_pred             eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCcccccc-ccceEEEeeccc
Confidence            99999999999999988  8999999984    355788877653    244679999999887776 699999999887


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ..     .++.++.+...+..+.|.     |...+|.+++.|.+|++=+
T Consensus       298 r~-----~lyklpGh~gsvn~~~Fh-----p~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  298 RR-----ILYKLPGHYGSVNEVDFH-----PTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             cc-----EEEEcCCcceeEEEeeec-----CCCcEEEEeccCceeEeec
Confidence            55     567888888899999998     9999999999999998754

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-26  Score=226.07  Aligned_cols=271  Identities=17%  Similarity=0.241  Sum_probs=218.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+ ..+.||.|.. ..|++|+..++........+                  ...++++.|.+.         +.+|++
T Consensus       184 dWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~------------------~~~vtSv~ws~~---------G~~Lav  234 (484)
T KOG0305|consen  184 DWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG------------------EELVTSVKWSPD---------GSHLAV  234 (484)
T ss_pred             hcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC------------------CCceEEEEECCC---------CCEEEE
Confidence            677 4457777764 47999999999865544322                  345667777765         899999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEEccC
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSD  170 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~~p~  170 (579)
                      |..+|.|.|||..+.+.+..+...|...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|
T Consensus       235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence            99999999999999888877754499999999997  66899999999999999998766555 8889999999999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-CCEEEEEe-cCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-GKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++++|+|+  +.+.|||....++..++..|...|..++|+|- ...||+|+ ..|+.|++||..+++..     ......
T Consensus       313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i-----~~vdtg  387 (484)
T KOG0305|consen  313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI-----DSVDTG  387 (484)
T ss_pred             CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe-----cccccC
Confidence            99999999  89999999888899999999999999999994 34566644 46899999999988744     334334


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceec
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  324 (579)
                      . .+..+.|+     +..+-|+++.  .++.|.||+..+.+.+                                     
T Consensus       388 s-QVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~ps~~~~-------------------------------------  424 (484)
T KOG0305|consen  388 S-QVCSLIWS-----KKYKELLSTHGYSENQITLWKYPSMKLV-------------------------------------  424 (484)
T ss_pred             C-ceeeEEEc-----CCCCEEEEecCCCCCcEEEEecccccee-------------------------------------
Confidence            4 44555665     6666566553  3778999987653221                                     


Q ss_pred             CCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          325 PASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       325 ~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                        ..+.+|...|..+++||||..+ ++|+.|.++++|++-
T Consensus       425 ------------------~~l~gH~~RVl~la~SPdg~~i-~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  425 ------------------AELLGHTSRVLYLALSPDGETI-VTGAADETLRFWNLF  461 (484)
T ss_pred             ------------------eeecCCcceeEEEEECCCCCEE-EEecccCcEEecccc
Confidence                              1456899999999999999999 999999999999984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=3.6e-26  Score=208.67  Aligned_cols=271  Identities=14%  Similarity=0.173  Sum_probs=215.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ++++++|++||.++|||.. |++...+.+|.+++                  ..+.|...++.      ...+++++.|.
T Consensus       115 ~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~i------------------k~v~~v~~n~~------~~~fvsas~Dq  169 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPI------------------KSVAWVIKNSS------SCLFVSASMDQ  169 (423)
T ss_pred             CceEEEeecCCeeEEEecC-CceEEEEecCCcce------------------eeeEEEecCCc------cceEEEecCCc
Confidence            6799999999999999974 88888887665544                  35566655544      45799999999


Q ss_pred             eEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-------------------------C
Q 008058           97 DVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-------------------------T  148 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-------------------------~  148 (579)
                      ++++|....++....   ...||...|-++...++|..+++|+.|.++.+|+..                         +
T Consensus       170 tl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  170 TLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             eEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            999999988764322   224899999999999999999999999999999932                         1


Q ss_pred             CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      +.++.++.+|..+|.++.|++ ...+++++  .+|+.||+.+++.+.++.+ .....++..+|..+.|++++ .|+.+++
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gs-sdr~irl  326 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGS-SDRHIRL  326 (423)
T ss_pred             cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecC-CCCceee
Confidence            235667889999999999997 66778888  8999999999999888874 56789999999998888887 6999999


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-eecccCCceEEeeecccCcc
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ||.+++...  ...+.+..|...+..+.+++    .+...|++|+.||++++||+++.. .+..+.++...+.+.+    
T Consensus       327 ~DPR~~~gs--~v~~s~~gH~nwVssvkwsp----~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd----  396 (423)
T KOG0313|consen  327 WDPRTGDGS--VVSQSLIGHKNWVSSVKWSP----TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD----  396 (423)
T ss_pred             cCCCCCCCc--eeEEeeecchhhhhheecCC----CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe----
Confidence            999988532  34455666666888888873    345678999999999999999887 7877777766666544    


Q ss_pred             cccccchhhhhccccceecCCc
Q 008058          306 SQKSATAAIFAAKLQDIVKPAS  327 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~  327 (579)
                       +.... .|++|+.|..++++.
T Consensus       397 -W~~~~-~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  397 -WNEGG-LIVSGGADNKLRIFK  416 (423)
T ss_pred             -ccCCc-eEEeccCcceEEEec
Confidence             33222 788999887666644

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=8.4e-28  Score=225.88  Aligned_cols=241  Identities=21%  Similarity=0.273  Sum_probs=195.7

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd  145 (579)
                      .++++.|+|..        +.+|++++.|+.|+||++.. +.++.++ .+|..+|.+++|+++|..|++++-|+.+++||
T Consensus       216 gvsai~~fp~~--------~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  216 GVSAIQWFPKK--------GHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             ccchhhhccce--------eeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            45677777754        78999999999999999987 6666554 78999999999999999999999999999999


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058          146 PLTGSLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~  222 (579)
                      +++|+++..|.. ...++|+.|+|++ +.+++|+  +.|+.||+++++.+..+..|-+.|..+.|-++|+++++++ +|+
T Consensus       287 tETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk  364 (503)
T KOG0282|consen  287 TETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK  364 (503)
T ss_pred             cccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc
Confidence            999999999873 4578999999998 6777776  8999999999999999999999999999999999999997 799


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      +++||+.+.+-..+    +........+.++...     |++.++++-+.|+.|.+|.+...-.+..             
T Consensus       365 s~riWe~~~~v~ik----~i~~~~~hsmP~~~~~-----P~~~~~~aQs~dN~i~ifs~~~~~r~nk-------------  422 (503)
T KOG0282|consen  365 SVRIWENRIPVPIK----NIADPEMHTMPCLTLH-----PNGKWFAAQSMDNYIAIFSTVPPFRLNK-------------  422 (503)
T ss_pred             cEEEEEcCCCccch----hhcchhhccCcceecC-----CCCCeehhhccCceEEEEecccccccCH-------------
Confidence            99999998875442    1122222333445554     9999999999999999997532211110             


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCC--CCcEEEeecCCcceeeccccceecccceeee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS--GEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                           +    .                              .+.||.  +.-..+.|||||.+| +||+.|+.+.+|+-.
T Consensus       423 -----k----K------------------------------~feGh~vaGys~~v~fSpDG~~l-~SGdsdG~v~~wdwk  462 (503)
T KOG0282|consen  423 -----K----K------------------------------RFEGHSVAGYSCQVDFSPDGRTL-CSGDSDGKVNFWDWK  462 (503)
T ss_pred             -----h----h------------------------------hhcceeccCceeeEEEcCCCCeE-EeecCCccEEEeech
Confidence                 0    0                              122333  235788999999999 999999999999974

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=3.8e-26  Score=211.76  Aligned_cols=275  Identities=19%  Similarity=0.262  Sum_probs=222.8

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ...|..+.+++|+.|..+.++|..+++.+..|++|.-.+....|+++                           ...+++
T Consensus       226 d~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~---------------------------~~~v~~  278 (506)
T KOG0289|consen  226 DIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKD---------------------------LDTVIT  278 (506)
T ss_pred             eecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccc---------------------------hhheee
Confidence            55555578999999999999999999999999988887777777766                           677899


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--CCCeeEEEEcc
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--TKGISCMAVSS  169 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~v~~l~~~p  169 (579)
                      ++.|-.|++|........ .....|..+|+.+..+|.|.||++++.||+..+.|+++|..+......  .-.+++.+|+|
T Consensus       279 aSad~~i~vws~~~~s~~-~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEP-TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             cCCcceEEeeccccccCc-cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            999999999999877655 334679999999999999999999999999999999999988776542  23699999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc
Q 008058          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      ||.+|.+|.  |.+++||+.++..+..|.+|.++|..+.|+.+|-||++++ +|+.|++||++..+..   ..+.+....
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~---kt~~l~~~~  433 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNF---KTIQLDEKK  433 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhccc---ceeeccccc
Confidence            999999998  9999999999999999999999999999999999999998 7999999999987744   233333322


Q ss_pred             eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCc
Q 008058          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPAS  327 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  327 (579)
                       .+..+.|+     +.|.+|+.++.|=+|++++-.+.                     .+.                   
T Consensus       434 -~v~s~~fD-----~SGt~L~~~g~~l~Vy~~~k~~k---------------------~W~-------------------  467 (506)
T KOG0289|consen  434 -EVNSLSFD-----QSGTYLGIAGSDLQVYICKKKTK---------------------SWT-------------------  467 (506)
T ss_pred             -cceeEEEc-----CCCCeEEeecceeEEEEEecccc---------------------cce-------------------
Confidence             46677787     89999999977766666642111                     011                   


Q ss_pred             eEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          328 VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       328 ~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                   ....+..|.+....+.|..+.+++ +++|.|...++..
T Consensus       468 -------------~~~~~~~~sg~st~v~Fg~~aq~l-~s~smd~~l~~~a  504 (506)
T KOG0289|consen  468 -------------EIKELADHSGLSTGVRFGEHAQYL-ASTSMDAILRLYA  504 (506)
T ss_pred             -------------eeehhhhcccccceeeecccceEE-eeccchhheEEee
Confidence                         011233466677888888888999 9999888876653

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.1e-25  Score=226.65  Aligned_cols=229  Identities=14%  Similarity=0.171  Sum_probs=173.5

Q ss_pred             EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (579)
Q Consensus        23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd  102 (579)
                      |+.++.|++|+......+..+.+|...+                  .+++|.|.+        +.+|++|+.||.|++||
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V------------------~~lafsP~~--------~~lLASgS~DgtIrIWD  103 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSI------------------LDLQFNPCF--------SEILASGSEDLTIRVWE  103 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCE------------------EEEEEcCCC--------CCEEEEEeCCCeEEEEE
Confidence            4557888889887766666676555444                  455665543        57899999999999999


Q ss_pred             ccCCeE-E------EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058          103 VSAGQL-K------WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus       103 ~~~~~~-~------~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      +.++.. .      .....+|...|.+++|+|++.. +++++.|++|++||+++++....+. +...|.+++|+|+|.+|
T Consensus       104 i~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        104 IPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             CCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence            986421 1      1223689999999999999876 5788999999999999998877776 56789999999999999


Q ss_pred             EEEC--CeEEEEECCCCeeeEEeecCCCCEEEE-----EEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeee
Q 008058          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFM-----TFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l-----~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      ++++  +.|++||+++++.+.++.+|.+.+...     .|++++.+++++|..+   +.|++||++.....  .....+.
T Consensus       183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld  260 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSID  260 (568)
T ss_pred             EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEec
Confidence            9887  899999999999999999998875443     3458889999988432   47999999964321  1222333


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .....+...+..     ++|.++++|+.|++|++|++..+.
T Consensus       261 ~~~~~L~p~~D~-----~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        261 NASAPLIPHYDE-----STGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             CCccceEEeeeC-----CCCCEEEEEECCCeEEEEEccCCc
Confidence            333333333333     678999999999999999987664

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=3.4e-26  Score=232.92  Aligned_cols=236  Identities=18%  Similarity=0.307  Sum_probs=203.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++..|.  +.++++++.|++|++||..++..+.. +.+|.+.+..+.|..-                           +.
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~---------------------------~~  262 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG---------------------------GD  262 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC---------------------------CC
Confidence            444555  56899999999999999999998887 9888887776666543                           67


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      .+++|+.|.++++||..+|++...+ .+|.+.|.++...  +.++++|+.|.+|++|++.++..+.++.+|.++|+++..
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~  339 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL  339 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence            8999999999999999999999777 5899999999874  457888999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +  +.++++|+  +.|++||+.+++++.++.+|...|.++.+.+. .++++++ .|++|++||+++..    .|+.++.+
T Consensus       340 ~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~IkvWdl~~~~----~c~~tl~~  411 (537)
T KOG0274|consen  340 D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS-LDTTIKVWDLRTKR----KCIHTLQG  411 (537)
T ss_pred             c--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee-eccceEeecCCchh----hhhhhhcC
Confidence            8  78888888  99999999999999999999999999988765 6888887 69999999999983    25567777


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      +...+....       ..+++|++++.||+|++||..+++.++..+
T Consensus       412 h~~~v~~l~-------~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~  450 (537)
T KOG0274|consen  412 HTSLVSSLL-------LRDNFLVSSSADGTIKLWDAEEGECLRTLE  450 (537)
T ss_pred             Ccccccccc-------cccceeEeccccccEEEeecccCceeeeec
Confidence            766664443       357999999999999999998888776554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=2.7e-25  Score=244.58  Aligned_cols=241  Identities=17%  Similarity=0.255  Sum_probs=194.8

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|  .+++|+| ++.+||+++.||+|+|||+.+++.+..+.+|...+.                  ++.|.+.+     
T Consensus       533 ~~v--~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~------------------~l~~~p~~-----  587 (793)
T PLN00181        533 SKL--SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW------------------SIDYSSAD-----  587 (793)
T ss_pred             Cce--eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE------------------EEEEcCCC-----
Confidence            345  4458987 478999999999999999999998888877665554                  44554432     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~  160 (579)
                         +.+|++|+.||.|++||+.++..+..+.  +...|.++.|+ ++|.+|++|+.||.|++||+++++ .+..+.+|..
T Consensus       588 ---~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~  662 (793)
T PLN00181        588 ---PTLLASGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK  662 (793)
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC
Confidence               6789999999999999999998876663  33689999995 578999999999999999998765 5677889999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .|.++.|. ++.++++++  ++|++||++.      .+.+.++.+|...+..+.|+|++.+|++++ .|+.|++|+....
T Consensus       663 ~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~  740 (793)
T PLN00181        663 TVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFP  740 (793)
T ss_pred             CEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCC
Confidence            99999997 677888887  8999999974      356888999999999999999999999988 7999999998655


Q ss_pred             ccccc--------eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          233 KKQSA--------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       233 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      .....        ..-....++...+..++|+     |++..|++|+.||.|+||++
T Consensus       741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws-----~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWR-----GQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CceEEEecccCCcccccccCCCCcEEEEEEEc-----CCCCeEEEecCCCcEEEEec
Confidence            32200        0001112344567888887     99999999999999999985

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2e-26  Score=199.50  Aligned_cols=238  Identities=16%  Similarity=0.230  Sum_probs=191.1

Q ss_pred             eEEEEccCC-CEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPAL-DYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg-~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ..++||++. +.+++++.||++++||... ..+++.++.|...+.+                  +.|.+..        .
T Consensus        64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~S------------------vdwn~~~--------r  117 (311)
T KOG0277|consen   64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYS------------------VDWNTVR--------R  117 (311)
T ss_pred             eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEE------------------ecccccc--------c
Confidence            345999865 5788999999999999542 3466777766655543                  4444433        5


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+++++.||+|++|+...++.+.++ .+|...|....|+| ..+.+++++.|+++++||++.......+..|...+.|+
T Consensus       118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c  196 (311)
T KOG0277|consen  118 RIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC  196 (311)
T ss_pred             eeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence            67888899999999999999988776 78999999999999 67789999999999999998655455589999999999


Q ss_pred             EEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          166 AVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      .|+. +..++++|+  +.|+.||+++- .++..+.+|.-.|+.++|+|-..-++++++.|-++++||...+..    ++.
T Consensus       197 dw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds----~~e  272 (311)
T KOG0277|consen  197 DWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS----AIE  272 (311)
T ss_pred             cccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh----hhh
Confidence            9997 556777777  89999999975 468889999999999999997654444445899999999986542    334


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      +..++...+..+.|+.    -++.++|+++.|+.++||+.
T Consensus       273 ~~~~HtEFv~g~Dws~----~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSL----FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccceEEecccccc----ccCceeeecccccceeeecc
Confidence            5668888888887773    46789999999999999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.9e-25  Score=194.10  Aligned_cols=239  Identities=14%  Similarity=0.197  Sum_probs=190.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ...||.+  +|+|.|+|||++|.|.++.||.-..+  +++..+.+|...+.+++|+.+                      
T Consensus        61 krsVRsv--Awsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s----------------------  116 (312)
T KOG0645|consen   61 KRSVRSV--AWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS----------------------  116 (312)
T ss_pred             hheeeee--eecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC----------------------
Confidence            3568777  99999999999999999999976544  678888888777766666555                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEe
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~  155 (579)
                           +++|++|+.|..|-||.+..+..  ....+++|+..|..+.|+|....|++++.|.+|++|+-.   ...+.+++
T Consensus       117 -----G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl  191 (312)
T KOG0645|consen  117 -----GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL  191 (312)
T ss_pred             -----CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence                 99999999999999999985532  234457899999999999999999999999999999765   34689999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .+|...|.+++|+|.|..|++++  ++++||-..+.-    -..|..++..+.|. ++ .+++++ +|+.|++|.-...-
T Consensus       192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~-~~-~IaS~g-gD~~i~lf~~s~~~  264 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD-NG-VIASGG-GDDAIRLFKESDSP  264 (312)
T ss_pred             cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec-cc-ceEecc-CCCEEEEEEecCCC
Confidence            99999999999999999999998  899999865321    12477889999998 44 678887 79999999866431


Q ss_pred             cc-cceeEE-eeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECC
Q 008058          234 KQ-SASCVL-AMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       234 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~  282 (579)
                      .. ....+. ....|...++++.+.     | .+.+|++++.||.|++|.+.
T Consensus       265 d~p~~~l~~~~~~aHe~dVNsV~w~-----p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  265 DEPSWNLLAKKEGAHEVDVNSVQWN-----PKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCchHHHHHhhhcccccccceEEEc-----CCCCCceeecCCCceEEEEEec
Confidence            11 111111 122445577888887     6 47899999999999999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6e-26  Score=213.88  Aligned_cols=231  Identities=14%  Similarity=0.178  Sum_probs=195.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|-.||++||+|+..|.|+|||..+...+..+..|..++....|++.                          ++..
T Consensus        72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~--------------------------d~t~  125 (487)
T KOG0310|consen   72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQ--------------------------DNTM  125 (487)
T ss_pred             eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEeccc--------------------------CCeE
Confidence            45689999999999999999999997776567778888888877777765                          2778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~  166 (579)
                      +++|+.|+.+++||+.+...+.. ..+|++.|.|.+|+|... .+++||.||+|++||++.. ..+.++. |..+|..+.
T Consensus       126 l~s~sDd~v~k~~d~s~a~v~~~-l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl  203 (487)
T KOG0310|consen  126 LVSGSDDKVVKYWDLSTAYVQAE-LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL  203 (487)
T ss_pred             EEecCCCceEEEEEcCCcEEEEE-ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence            88999999999999999987434 478999999999999654 6899999999999999877 5666666 888999999


Q ss_pred             EccCCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          167 VSSDGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       167 ~~p~g~~l~~~~-g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +-|.|..+++++ +.|++||+.+| +.+..+..|...|+|+++..+++.|+++| -|+.+++||+.+.+     .+..+.
T Consensus       204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd~t~~K-----vv~s~~  277 (487)
T KOG0310|consen  204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFDTTNYK-----VVHSWK  277 (487)
T ss_pred             EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEEccceE-----EEEeee
Confidence            999999999998 79999999955 55555566999999999999999999998 59999999977655     456677


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw  279 (579)
                      -++.++++..+      |++..++.|..+|.+.+=
T Consensus       278 ~~~pvLsiavs------~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  278 YPGPVLSIAVS------PDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             cccceeeEEec------CCCceEEEecccceeeee
Confidence            77777776655      899999999999988776

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1e-26  Score=214.28  Aligned_cols=277  Identities=17%  Similarity=0.158  Sum_probs=217.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|+++  .|-++...|++|+.|..|++|++..++  .+.++.+..+.+....|.++                      
T Consensus       175 ~gev~~v--~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~----------------------  230 (459)
T KOG0288|consen  175 EGEVHDV--EFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD----------------------  230 (459)
T ss_pred             cccccee--EEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC----------------------
Confidence            4567556  999998899999999999999998766  44445444444544444444                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +..+++++.|+.+++|++...+...++ .+|++.|+++.|......+++|+.|.+|+.||+....+.+++-. ..
T Consensus       231 -----~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S  303 (459)
T KOG0288|consen  231 -----NKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GS  303 (459)
T ss_pred             -----CceEEeecCCCceeeeeccchhhhhhh-cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cc
Confidence                 778999999999999999999888666 67999999999988776699999999999999999888877542 34


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .+..|..+  +..+++|.  +.|+.||.++..+....+.+. .|+++..++++..+++++ .|.++.+.|+++....   
T Consensus       304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss-RDdtl~viDlRt~eI~---  376 (459)
T KOG0288|consen  304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS-RDDTLKVIDLRTKEIR---  376 (459)
T ss_pred             cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec-CCCceeeeecccccEE---
Confidence            55666665  45666666  899999999999999988765 899999999999999987 7999999999987643   


Q ss_pred             eEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          239 CVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       239 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                      ..+.-.  .....++-+.|+     |++.|+++|+.||.|+||++.+++.....+.                        
T Consensus       377 ~~~sA~g~k~asDwtrvvfS-----pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~------------------------  427 (459)
T KOG0288|consen  377 QTFSAEGFKCASDWTRVVFS-----PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL------------------------  427 (459)
T ss_pred             EEeeccccccccccceeEEC-----CCCceeeeccCCCcEEEEEccCceEEEEecc------------------------
Confidence            111111  111124556666     9999999999999999999988876432210                        


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCC-CCcEEEeecCCcceeeccccceecccce
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS-GEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~-~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                                    .+. ..|++++|+|.|.+| ++++.++.+.+|
T Consensus       428 ------------------------------s~s~~aI~s~~W~~sG~~L-lsadk~~~v~lW  458 (459)
T KOG0288|consen  428 ------------------------------STSNAAITSLSWNPSGSGL-LSADKQKAVTLW  458 (459)
T ss_pred             ------------------------------CCCCcceEEEEEcCCCchh-hcccCCcceEec
Confidence                                          011 158999999999999 999999999988

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=9.5e-26  Score=219.09  Aligned_cols=231  Identities=17%  Similarity=0.241  Sum_probs=191.9

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           15 PALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      |+++||++||.||.|++|+.....      +...++.|...++.++....                           +..
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~---------------------------~~t   87 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN---------------------------GKT   87 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC---------------------------CCc
Confidence            467899999999999999875322      35666777777766655544                           667


Q ss_pred             EEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEeCCCC--ceeeE--------e
Q 008058           89 LVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISF-ATHGSCIYSAGADGMVCEIDPLTG--SLLGK--------F  155 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~-~~~~~~l~s~~~dg~v~iwd~~~~--~~~~~--------~  155 (579)
                      +++++.|-+|++|+...+.  +. .....|.+.|.|+++ .++...+++||.|+.|.+||+.++  +.+..        +
T Consensus        88 lIS~SsDtTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen   88 LISASSDTTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             eEEecCCceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence            9999999999999998873  44 344779999999999 788889999999999999999977  22322        2


Q ss_pred             e-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          156 R-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       156 ~-~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      . ++..+|++++.++.|..+++|+  +.+++||.++.+.+..+.||...|..+..++||+.+++++ .||+|++||+...
T Consensus       167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLgqQ  245 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLGQQ  245 (735)
T ss_pred             CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeecccc
Confidence            2 6777999999999999999998  8999999999999999999999999999999999999998 5999999999887


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +     |+.++..|...+.....+     |+=.++.+|+.||.|+.=|+.+.
T Consensus       246 r-----Cl~T~~vH~e~VWaL~~~-----~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 R-----CLATYIVHKEGVWALQSS-----PSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             c-----eeeeEEeccCceEEEeeC-----CCcceEEecCCCCcEEecccCCc
Confidence            6     555665555555555555     77789999999999999988774

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=220.14  Aligned_cols=334  Identities=13%  Similarity=0.116  Sum_probs=233.8

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE---EEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      ++.|.|+|..++|.+...|..++|||++.-..+   ..+--|...+..+.--+.  .-| +....|   .          
T Consensus       327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~--nv~-~~~~ac---l----------  390 (1080)
T KOG1408|consen  327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC--NVH-SPTAAC---L----------  390 (1080)
T ss_pred             eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--ccc-Cccccc---C----------
Confidence            468899999999999999999999999754322   112222222221111110  000 000000   0          


Q ss_pred             CCcEEEEEECCCeEEEEEccCC---eEEEE-e---------c-----------------------CCCCCCEEEEEEccC
Q 008058           85 GSSLLVLGTGGGDVLALAVSAG---QLKWR-L---------S-----------------------DCHPGGVSAISFATH  128 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~---~~~~~-~---------~-----------------------~~h~~~V~~l~~~~~  128 (579)
                      ....+.+|+.||+|++||+..+   ....+ +         .                       -+...++.+++.+|+
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~  470 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD  470 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC
Confidence            1456899999999999999752   11100 0         0                       012346999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCE
Q 008058          129 GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAV  202 (579)
Q Consensus       129 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v  202 (579)
                      |++|++|..-|++++||+.+-+....+.+|...|.|+.++-   ..++|++++  ..|+|||+.. ..++.++.+|...|
T Consensus       471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssI  550 (1080)
T KOG1408|consen  471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSI  550 (1080)
T ss_pred             cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccce
Confidence            99999999999999999999988889999999999999985   357888988  6899999964 45678899999999


Q ss_pred             EEEEEecCC--CEEEEEecCCCeEEEEEcCCCccccceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058          203 RFMTFSDNG--KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       203 ~~l~~~~~~--~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  277 (579)
                      +++.|.-+|  ..++++| .|+.|.+--.+.....   .++.-.++   ...+.-+..     +|..+++++++.|..|+
T Consensus       551 TsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g---~~f~r~t~t~~ktTlYDm~V-----dp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  551 TSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSG---RLFPRHTQTLSKTTLYDMAV-----DPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             eEEEEeecCCceEEEecc-CchhhheehhccccCc---eeccccccccccceEEEeee-----CCCcceEEEEecccceE
Confidence            999998877  6788888 6887654333221111   11211111   112222333     38999999999999999


Q ss_pred             EEECCCceeecccCCceEEeeecc--cCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008058          278 IWYGQNIEELRNTKATKILSSSED--VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (579)
Q Consensus       278 iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~  355 (579)
                      |||++++++.+.+++.+..-....  ...|.+.    ++++...|..+-.+|        -....+..++.||...|+.+
T Consensus       622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi----Y~atScsdktl~~~D--------f~sgEcvA~m~GHsE~VTG~  689 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI----YLATSCSDKTLCFVD--------FVSGECVAQMTGHSEAVTGV  689 (1080)
T ss_pred             EEeccccceeeeecccccCCCceEEEEECCCcc----EEEEeecCCceEEEE--------eccchhhhhhcCcchheeee
Confidence            999999999988876543311111  1244444    777777765333222        33456677888999999999


Q ss_pred             eecCCcceeeccccceecccceee
Q 008058          356 NCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       356 ~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .|++|-++| +|.|.|+.|.+|.+
T Consensus       690 kF~nDCkHl-ISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  690 KFLNDCKHL-ISVSGDGCIFVWKL  712 (1080)
T ss_pred             eecccchhh-eeecCCceEEEEEC
Confidence            999999999 99999999999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.6e-25  Score=216.96  Aligned_cols=240  Identities=19%  Similarity=0.254  Sum_probs=200.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++.|+++|++||.|..+|.|.|||..+.+.+..+..                 +....+.+++|.         
T Consensus       218 ~~v--tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~-----------------~h~~rvg~laW~---------  269 (484)
T KOG0305|consen  218 ELV--TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG-----------------SHASRVGSLAWN---------  269 (484)
T ss_pred             Cce--EEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-----------------CcCceeEEEecc---------
Confidence            456  4569999999999999999999999998887777653                 224467788886         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        ...+.+|+.+|.|..+|+...+.......+|...|..+.|++|++++++|+.|+.+.|||.....++..+..|...|.
T Consensus       270 --~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK  347 (484)
T KOG0305|consen  270 --SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK  347 (484)
T ss_pred             --CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee
Confidence              456899999999999999988766555678999999999999999999999999999999988889999999999999


Q ss_pred             EEEEcc-CCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE-EecCCCeEEEEEcCCCccccc
Q 008058          164 CMAVSS-DGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p-~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      +++|+| ...+||+|+    +.|++||..+++.+..+. ..+.|.++.|++..+-|++ .|..++.|.||+..+.+..  
T Consensus       348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~--  424 (484)
T KOG0305|consen  348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV--  424 (484)
T ss_pred             EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee--
Confidence            999999 567888887    689999999999888775 5678999999998865554 4455778999999886533  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                         ..+..|...+-.+.++     |||..|++|+.|.++++|++-..
T Consensus       425 ---~~l~gH~~RVl~la~S-----Pdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  425 ---AELLGHTSRVLYLALS-----PDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ---eeecCCcceeEEEEEC-----CCCCEEEEecccCcEEeccccCC
Confidence               3444444455566666     99999999999999999997654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.9e-25  Score=227.63  Aligned_cols=299  Identities=16%  Similarity=0.132  Sum_probs=218.7

Q ss_pred             CcccceEEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            4 SNIRDILTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..|  .++..+|||..+|||+  .||.++||+.+.--.  .............+..   ..| ...++|+.|.+.     
T Consensus        14 ~~I--fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~~~~l~k~l~~m---~~h-~~sv~CVR~S~d-----   80 (942)
T KOG0973|consen   14 KSI--FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEKNENLPKHLCTM---DDH-DGSVNCVRFSPD-----   80 (942)
T ss_pred             eeE--EEEEecCCceeEecCCccccccceeeccccccc--hhhhhhcccchhheee---ccc-cCceeEEEECCC-----
Confidence            446  6779999999999999  899999998653110  0000000000001110   122 335667777664     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC----------C--------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSA----------G--------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE  143 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~----------~--------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i  143 (579)
                          +.+||+|+.|+.|.||....          |        +++ ..+.+|...|.+++|+|++.++++++.|++|.+
T Consensus        81 ----G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   81 ----GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVII  155 (942)
T ss_pred             ----CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEE
Confidence                89999999999999999873          0        123 334689999999999999999999999999999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEecCCCEEE
Q 008058          144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFSDNGKYVL  215 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~l~  215 (579)
                      ||..+.+.+..+++|...|..+.|+|-|++|++-+  ++|++|++.+....+.+.++.      .....+.|+|||.+|+
T Consensus       156 wn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  156 WNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             EccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            99999999999999999999999999999999987  899999988776666665443      3477899999999998


Q ss_pred             EEecCCC---eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc------------EEEEEEcCCeEEEEE
Q 008058          216 SSAVGER---YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL------------YVLAISETGVCYIWY  280 (579)
Q Consensus       216 s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~s~~~dg~i~iwd  280 (579)
                      +.-.-.+   ++.|.+-.+.+     .-..+-.|...+.++.|++..+.....            .+|+|+.|++|.||.
T Consensus       236 s~nA~n~~~~~~~IieR~tWk-----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWK-----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             chhhccCCcceeEEEecCCce-----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence            8653332   56676654443     223344555588899998654432222            678889999999998


Q ss_pred             CCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCC
Q 008058          281 GQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQD  360 (579)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~d  360 (579)
                      ....+++.                           .+..                           .....|..++|+||
T Consensus       311 T~~~RPl~---------------------------vi~~---------------------------lf~~SI~DmsWspd  336 (942)
T KOG0973|consen  311 TALPRPLF---------------------------VIHN---------------------------LFNKSIVDMSWSPD  336 (942)
T ss_pred             cCCCCchh---------------------------hhhh---------------------------hhcCceeeeeEcCC
Confidence            64433322                           1111                           11236899999999


Q ss_pred             cceeeccccceecccceeee
Q 008058          361 GVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       361 g~~l~~s~s~d~~~~~w~~~  380 (579)
                      |..| +.+|.|+++.+-.+.
T Consensus       337 G~~L-facS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  337 GFSL-FACSLDGTVALIHFE  355 (942)
T ss_pred             CCeE-EEEecCCeEEEEEcc
Confidence            9999 999999999998875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.2e-25  Score=210.90  Aligned_cols=284  Identities=14%  Similarity=0.178  Sum_probs=198.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +..|  .++++.|.|..|++||.|.+|++||...... ...|+....              .....+..+.|.+.     
T Consensus       167 tk~V--sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--------------~E~h~i~sl~ys~T-----  225 (641)
T KOG0772|consen  167 TKIV--SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--------------CETHQINSLQYSVT-----  225 (641)
T ss_pred             ceEE--EEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--------------ccccccceeeecCC-----
Confidence            3456  5569999999999999999999999874331 122221111              01123344445443     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEE-----------ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----------LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----------~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~  149 (579)
                          +..|++.+..-..+++|-...+....           ..+||...++|.+|+|+.+ .|++++.||++++||+...
T Consensus       226 ----g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~  301 (641)
T KOG0772|consen  226 ----GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT  301 (641)
T ss_pred             ----CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence                78889999999999999765443311           1368999999999999664 5999999999999998754


Q ss_pred             c-eeeEeec-----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee---eEEeecCCC--CEEEEEEecCCCEEEE
Q 008058          150 S-LLGKFRA-----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPG--AVRFMTFSDNGKYVLS  216 (579)
Q Consensus       150 ~-~~~~~~~-----~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~--~v~~l~~~~~~~~l~s  216 (579)
                      + ..+.|+.     ..-+++.++|+|||+.+|+|.  |+|.+|+......   ...-..|..  .|++|.|+++|++|++
T Consensus       302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  302 KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence            3 3333332     223789999999999999988  9999999864322   223356776  8999999999999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEEECCCceeeccc
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~  290 (579)
                      -| .|+++++||++..+..-  .++.--.......-++|+     |+.+.|++|+.      .|++.+||..+.+.+..+
T Consensus       382 Rg-~D~tLKvWDLrq~kkpL--~~~tgL~t~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki  453 (641)
T KOG0772|consen  382 RG-FDDTLKVWDLRQFKKPL--NVRTGLPTPFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI  453 (641)
T ss_pred             cc-CCCceeeeeccccccch--hhhcCCCccCCCCccccC-----CCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence            98 69999999999876431  111111222333455666     99999999964      568999999998888766


Q ss_pred             CCceEEeeecccCcccccccchhhhhccccceec
Q 008058          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  324 (579)
                      .-....+...     .+...++.|.+++.||.++
T Consensus       454 ~i~~aSvv~~-----~WhpkLNQi~~gsgdG~~~  482 (641)
T KOG0772|consen  454 DISTASVVRC-----LWHPKLNQIFAGSGDGTAH  482 (641)
T ss_pred             cCCCceEEEE-----eecchhhheeeecCCCceE
Confidence            5443332221     2444455888888876443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=7.2e-25  Score=223.25  Aligned_cols=239  Identities=20%  Similarity=0.278  Sum_probs=199.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+.|  .+++|..-+.+|++|+.|.+++|||..+|.|...+.+|...+..+...                         
T Consensus       248 H~g~V--~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-------------------------  300 (537)
T KOG0274|consen  248 HFGGV--WGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-------------------------  300 (537)
T ss_pred             CCCCc--eeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-------------------------
Confidence            45678  455888778899999999999999999999999999877655433222                         


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++|+.|.+|++|++.++.++..+ .+|.++|+++..+  +.++++|+.|++|++||+.++++++++.+|...
T Consensus       301 ----~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  301 ----PFLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR  373 (537)
T ss_pred             ----CceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence                445777899999999999999998665 5699999999996  789999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |+++.+.+. ..+++|+  +.|++||+++. +++.++.+|..-+..+.+.  +++|++++ .|++|++||...++..   
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~-aD~~Ik~WD~~~~~~~---  446 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSS-ADGTIKLWDAEEGECL---  446 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEecc-ccccEEEeecccCcee---
Confidence            999988765 8899998  89999999999 9999999999999777654  66888887 7999999999988744   


Q ss_pred             eEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        ..+.. +...+..+.+       ....+++++.||.+++||++++...+..
T Consensus       447 --~~~~~~~~~~v~~l~~-------~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  447 --RTLEGRHVGGVSALAL-------GKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             --eeeccCCcccEEEeec-------CcceEEEEecCCeeEEEecccCchhhhh
Confidence              44444 3233343433       2478899999999999999999887654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.9e-25  Score=205.84  Aligned_cols=240  Identities=16%  Similarity=0.298  Sum_probs=194.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..||  ..+.||||.+||++|+.|..+++||+.+|.+...+..                + .+...++++|.|.      
T Consensus       269 ~~~V--~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~-~~~S~~sc~W~pD------  323 (519)
T KOG0293|consen  269 SQPV--SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------G-LGFSVSSCAWCPD------  323 (519)
T ss_pred             cCce--EEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------C-cCCCcceeEEccC------
Confidence            4577  7779999999999999999999999999998877642                2 3556778999987      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++|+.|+.+..||+..+..- ....-....|.+++..+||+++++.+.|..|++++..+......+. ...+|
T Consensus       324 ---g~~~V~Gs~dr~i~~wdlDgn~~~-~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~i  398 (519)
T KOG0293|consen  324 ---GFRFVTGSPDRTIIMWDLDGNILG-NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPI  398 (519)
T ss_pred             ---CceeEecCCCCcEEEecCCcchhh-cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCce
Confidence               677999999999999999865432 2212233569999999999999999999999999987765554444 34689


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC--EEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA--VRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~--v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ++++++.||+++++.-  ..+++||++..+.++++.||...  +..-+|-- +..++++|+ +|+.|+||+..+++.   
T Consensus       399 ts~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-ED~kvyIWhr~sgkl---  474 (519)
T KOG0293|consen  399 TSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS-EDSKVYIWHRISGKL---  474 (519)
T ss_pred             eEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC-CCceEEEEEccCCce---
Confidence            9999999999988876  89999999999999999999865  22334543 445667665 899999999999874   


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                        +..+..+...+.+++|+|    .+..++|++++||+|+||...
T Consensus       475 --l~~LsGHs~~vNcVswNP----~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  475 --LAVLSGHSKTVNCVSWNP----ADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             --eEeecCCcceeeEEecCC----CCHHHhhccCCCCeEEEecCC
Confidence              467778889999999984    356789999999999999754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-24  Score=194.17  Aligned_cols=242  Identities=19%  Similarity=0.266  Sum_probs=193.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|.++  |.  +|.|+|+||.|-+|+|||+.+......+-.|.+.++.+.|.+++.                     
T Consensus        42 H~~sitav--AV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------------   96 (362)
T KOG0294|consen   42 HAGSITAL--AV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------------   96 (362)
T ss_pred             cccceeEE--Ee--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc---------------------
Confidence            45778444  44  689999999999999999999988888888888888777776611                     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          .+.|++|+.||.|.+|+.....++..+ ++|.+.|+.++.+|.|+..++.+.|+.++.||+.+|+.-...+- ...
T Consensus        97 ----~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~  170 (362)
T KOG0294|consen   97 ----KSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNK  170 (362)
T ss_pred             ----hhheeeecCCCcEEEEEcCCeEEeeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCc
Confidence                236999999999999999999888666 78999999999999999999999999999999999986655442 233


Q ss_pred             eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+.+.|+|.|.+++.+. +.|-+|.+.+......+.. ...+.++.|.. +.+|++++ +|+.|.+||.++....    .
T Consensus       171 at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~----~  243 (362)
T KOG0294|consen  171 ATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPL----T  243 (362)
T ss_pred             ceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeecC-CceEEEec-CCceEEEeccCCCccc----e
Confidence            45699999999888888 9999999988776655542 24567777754 45778887 6999999999885433    2


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ....|...+-....+.    .|++.+|++++.||.|++||++...
T Consensus       244 ~~~AH~~RVK~i~~~~----~~~~~~lvTaSSDG~I~vWd~~~~~  284 (362)
T KOG0294|consen  244 EFLAHENRVKDIASYT----NPEHEYLVTASSDGFIKVWDIDMET  284 (362)
T ss_pred             eeecchhheeeeEEEe----cCCceEEEEeccCceEEEEEccccc
Confidence            3345666666666565    3788999999999999999986553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=3.6e-26  Score=197.26  Aligned_cols=242  Identities=15%  Similarity=0.238  Sum_probs=204.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  +.+..+.|...-|+++.|-+-+|||.-+|..++.|. |..-+....|+.+                        
T Consensus        59 kgav--w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~d------------------------  111 (334)
T KOG0278|consen   59 KGAV--WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQD------------------------  111 (334)
T ss_pred             Ccce--eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEeccc------------------------
Confidence            3567  666778888888999999999999999999998885 5555555555555                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         .+.|++|+.+.-+++||++..+....-..+|++.|..+.|....+.|++++.|++||+||.+++..++++. .+.+|
T Consensus       112 ---s~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~V  187 (334)
T KOG0278|consen  112 ---SNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPV  187 (334)
T ss_pred             ---chhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCC
Confidence               77899999999999999998775544457899999999999989999999999999999999999999987 46689


Q ss_pred             eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++.++++|+++.++. +.|..||..+...++.+. -...|.+...+|+...+++++ +|..++.||..++..+.   .+
T Consensus       188 tSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~---~~  262 (334)
T KOG0278|consen  188 TSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIG---SY  262 (334)
T ss_pred             cceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecC-cceEEEEEeccCCceee---ec
Confidence            9999999999999998 899999999988888776 456789999999998888777 89999999999998652   22


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                       ...+...+.|+.|+     |+|...++|++||+|++|....++.
T Consensus       263 -nkgh~gpVhcVrFS-----PdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  263 -NKGHFGPVHCVRFS-----PDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -ccCCCCceEEEEEC-----CCCceeeccCCCceEEEEEecCCCc
Confidence             23455567889998     9999999999999999998655543

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=8.1e-24  Score=215.48  Aligned_cols=204  Identities=14%  Similarity=0.195  Sum_probs=162.8

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCe-------EEEEeccccccccccccccccccccccCccceEEe
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      ++++|  .+++|+| ++++|++|+.|++|+|||+.++.       .+..+.+|..                  .+.++.|
T Consensus        74 H~~~V--~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~------------------~V~~l~f  133 (493)
T PTZ00421         74 QEGPI--IDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK------------------KVGIVSF  133 (493)
T ss_pred             CCCCE--EEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC------------------cEEEEEe
Confidence            35678  5569999 88999999999999999997653       2334443333                  4556677


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008058           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  153 (579)
                      .|..        +.+|++|+.|+.|++||+.+++....+ .+|...|.+++|+|+|.+|++++.|++|++||+++++.+.
T Consensus       134 ~P~~--------~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~  204 (493)
T PTZ00421        134 HPSA--------MNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS  204 (493)
T ss_pred             CcCC--------CCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence            6643        468999999999999999999887665 6799999999999999999999999999999999999999


Q ss_pred             EeecCCCC-eeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          154 KFRASTKG-ISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       154 ~~~~~~~~-v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~-~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      .+.+|.+. +..+.|.+++..+++++      +.|++||+++.. ++.....+ ...+....|+++++++++++..|+.|
T Consensus       205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I  284 (493)
T PTZ00421        205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI  284 (493)
T ss_pred             EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence            99888764 45678899887777643      689999998754 34444333 34556678899999998887569999


Q ss_pred             EEEEcCCCcc
Q 008058          225 ALWRTDGVKK  234 (579)
Q Consensus       225 ~vwd~~~~~~  234 (579)
                      ++||+.+++.
T Consensus       285 riwdl~~~~~  294 (493)
T PTZ00421        285 RCFELMNERL  294 (493)
T ss_pred             EEEEeeCCce
Confidence            9999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=4.8e-26  Score=203.35  Aligned_cols=238  Identities=17%  Similarity=0.207  Sum_probs=198.1

Q ss_pred             CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cccccccccccccccccccccCccceEEeeecccc
Q 008058            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      |...+|  +|++||.|...+|+|+.||.|+||.+.+|.|+..|. .|...+.++.|+.+                     
T Consensus       261 Mmd~aV--lci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD---------------------  317 (508)
T KOG0275|consen  261 MMDDAV--LCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRD---------------------  317 (508)
T ss_pred             ecccce--EEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccC---------------------
Confidence            556889  888999999999999999999999999999999887 66666666666665                     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                            +..+++++.|.++++.-+.+|+++..+ .||++-|+...|.+||.++++++.||+|++|+..+.+++.+|+...
T Consensus       318 ------~SqiLS~sfD~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~  390 (508)
T KOG0275|consen  318 ------NSQILSASFDQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG  390 (508)
T ss_pred             ------cchhhcccccceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC
Confidence                  778999999999999999999998777 7899999999999999999999999999999999999999988644


Q ss_pred             C--CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          160 K--GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~--~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .  +|+++-.-|. -..++++.  ++|++-++ .|+.+++|..   ..+...+...+|.|.++...+ +|+.++.|...+
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~s  468 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLS  468 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeec
Confidence            3  7888888774 45677776  89999987 4678888853   235566778999999999988 799999999999


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ++..     .++..+...+-.....     |..+.|++=++||.+++|.
T Consensus       469 G~LE-----~tl~VhEkdvIGl~HH-----PHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  469 GKLE-----RTLPVHEKDVIGLTHH-----PHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             Ccee-----eeeecccccccccccC-----cccchhhhhcccchhhhcC
Confidence            8754     2333333333334444     8889999999999999994

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=191.67  Aligned_cols=286  Identities=17%  Similarity=0.198  Sum_probs=194.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ...|  .+++||.||++||+++.|++|+||+++....    +.|..--.++      +.+    ..|.+.|.|.-     
T Consensus        86 ~~~v--t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nv------e~d----hpT~V~FapDc-----  144 (420)
T KOG2096|consen   86 KKEV--TDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNV------EYD----HPTRVVFAPDC-----  144 (420)
T ss_pred             CCce--eeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccc------cCC----CceEEEECCCc-----
Confidence            4668  5559999999999999999999999876321    1111100000      001    12233333321     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCC---eEE--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAG---QLK--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~---~~~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~  151 (579)
                         ..+++.+-...++++|.+...   ...        ..+...|...|..+-...++.+|++++.|..|.+|+++ |+.
T Consensus       145 ---~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~  220 (420)
T KOG2096|consen  145 ---KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL  220 (420)
T ss_pred             ---ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence               334444555556999987532   111        12334577788888888889999999999999999998 999


Q ss_pred             eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC---CC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          152 LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS---DH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       152 ~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~---~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      +..+......-+..+.+|+|+++++++  -.|++|..-   .|     ..+..++||.+.|..++|+|+++.+++.+ .|
T Consensus       221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS-kD  299 (420)
T KOG2096|consen  221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS-KD  299 (420)
T ss_pred             eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe-cC
Confidence            999887777778889999999999998  789999863   22     33567899999999999999999999998 79


Q ss_pred             CeEEEEEcCCCcccc--ceeEE----ee-ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce
Q 008058          222 RYIALWRTDGVKKQS--ASCVL----AM-EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~--~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      |++++||.+-.-...  .....    .+ ......+ -+..+     |+|+.|+... ...+++|..++++.....    
T Consensus       300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls-----P~g~~lA~s~-gs~l~~~~se~g~~~~~~----  368 (420)
T KOG2096|consen  300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS-----PSGDSLAVSF-GSDLKVFASEDGKDYPEL----  368 (420)
T ss_pred             CcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC-----CCCcEEEeec-CCceEEEEcccCccchhH----
Confidence            999999986432110  00000    01 1112222 23344     8888776554 357888876665432211    


Q ss_pred             EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008058          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~  374 (579)
                                                                      +  ..|...|.+++|++||+++ +|++ |..+
T Consensus       369 ------------------------------------------------e--~~h~~~Is~is~~~~g~~~-atcG-dr~v  396 (420)
T KOG2096|consen  369 ------------------------------------------------E--DIHSTTISSISYSSDGKYI-ATCG-DRYV  396 (420)
T ss_pred             ------------------------------------------------H--HhhcCceeeEEecCCCcEE-eeec-ceee
Confidence                                                            1  1577789999999999999 9998 6555


Q ss_pred             cce
Q 008058          375 RGR  377 (579)
Q Consensus       375 ~~w  377 (579)
                      ++.
T Consensus       397 rv~  399 (420)
T KOG2096|consen  397 RVI  399 (420)
T ss_pred             eee
Confidence            554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.6e-23  Score=178.18  Aligned_cols=243  Identities=15%  Similarity=0.202  Sum_probs=190.0

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-----eeEeecCCCCeeEEEEcc----CCCEEEEEC-C--eE
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-----LGKFRASTKGISCMAVSS----DGKMLATAA-G--QL  181 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~l~~~p----~g~~l~~~~-g--~i  181 (579)
                      +.|.+.|+|.+|+|+|+.+++|+.|.+|++.-+....+     -..|.-|.+.|..++|-.    .|.+|++++ |  .|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            56899999999999999999999999999976543222     235777999999999964    356888887 5  67


Q ss_pred             EEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-------cCceeeEeEE
Q 008058          182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-------HPAVFMDCRC  254 (579)
Q Consensus       182 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~  254 (579)
                      ++-|...|+....+.||.+.|.++ ++-+|-.+++++ .|.+|++||++-..     ++.++.       -....+..++
T Consensus       166 y~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgs-qdktirfwdlrv~~-----~v~~l~~~~~~~glessavaav~  238 (350)
T KOG0641|consen  166 YITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGS-QDKTIRFWDLRVNS-----CVNTLDNDFHDGGLESSAVAAVA  238 (350)
T ss_pred             EEeecCCCCcceeecCCcccEEEE-EEecCcEEEccC-CCceEEEEeeeccc-----eeeeccCcccCCCcccceeEEEE
Confidence            777888999999999999999876 233566667665 89999999998765     333332       1234566677


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEe
Q 008058          255 IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY  334 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  334 (579)
                      ..     |.|+.|++|-.|....+||++.++.++.+.|+...+.+.. |+|...    ++++++.|..++.-|     ..
T Consensus       239 vd-----psgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vr-fsp~a~----yllt~syd~~ikltd-----lq  303 (350)
T KOG0641|consen  239 VD-----PSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVR-FSPGAH----YLLTCSYDMKIKLTD-----LQ  303 (350)
T ss_pred             EC-----CCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEE-eCCCce----EEEEecccceEEEee-----cc
Confidence            76     9999999999999999999999999999999887777766 788777    899999986555433     34


Q ss_pred             CCCCCcee-EEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          335 GLLLKPSF-QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       335 g~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |....... -.+..|...++.+.|.|..--+ +|.|.|++..+|-+
T Consensus       304 gdla~el~~~vv~ehkdk~i~~rwh~~d~sf-isssadkt~tlwa~  348 (350)
T KOG0641|consen  304 GDLAHELPIMVVAEHKDKAIQCRWHPQDFSF-ISSSADKTATLWAL  348 (350)
T ss_pred             cchhhcCceEEEEeccCceEEEEecCcccee-eeccCcceEEEecc
Confidence            43333222 2344599899999999998877 89999999999965

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.3e-23  Score=212.89  Aligned_cols=179  Identities=9%  Similarity=0.081  Sum_probs=142.5

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCc--------eeeEeecCCCCe
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGS--------LLGKFRASTKGI  162 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~v  162 (579)
                      |+..+.|++|+......+..+ .+|.++|.+++|+|+ +.+|++|+.||+|++||+.++.        .+..+.+|...|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            455678999998877666555 689999999999996 7899999999999999997642        344678899999


Q ss_pred             eEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          163 SCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       163 ~~l~~~p~g~~l-~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+++|+|++..+ ++++  +.|++||+++++.+..+. |...|.+++|+|+|.+|++++ .|+.|++||+++++..    
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i----  202 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIA----  202 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEE----
Confidence            999999998765 5665  899999999998877776 667899999999999998887 7999999999987643    


Q ss_pred             EEeeecCceee-----EeEEecCCcccCCCcEEEEEEcCC----eEEEEECCC
Q 008058          240 VLAMEHPAVFM-----DCRCIDNGGVDDAGLYVLAISETG----VCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~  283 (579)
                       ..+..+....     ....|+     +++.+|++++.|+    +|+|||+++
T Consensus       203 -~tl~gH~g~~~s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        203 -SSFHIHDGGKNTKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             -EEEecccCCceeEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCC
Confidence             2333332221     222233     7889999988774    799999875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.9e-25  Score=202.62  Aligned_cols=261  Identities=16%  Similarity=0.170  Sum_probs=209.2

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      ..+++|+.||.|++||+.+.++...+ .+|.+.|.++++..  ..+++++.|.+|+.|-+. +.+++++.+ ...+..+.
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg-~s~~~gId  154 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILG-KSVYLGID  154 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeec-cccccccc
Confidence            56899999999999999999988766 68999999999976  678999999999999975 457777764 34677788


Q ss_pred             EccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          167 VSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       167 ~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      -+..+..+++++..|.|||.+-..++.++......|.++.|+|....++.++..|+.|.+||++...... +.+..+.  
T Consensus       155 h~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~mR--  231 (433)
T KOG0268|consen  155 HHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK-KVILTMR--  231 (433)
T ss_pred             cccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc-eeeeecc--
Confidence            8878889999999999999999899999998889999999999877665555479999999999987652 2223322  


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-eecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                         ...++|+     |++..++++++|..++.||++... .+..++.+...+...+ |+|.|+    .+++|+.|..+++
T Consensus       232 ---TN~Iswn-----PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd-fsptG~----EfvsgsyDksIRI  298 (433)
T KOG0268|consen  232 ---TNTICWN-----PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD-FSPTGQ----EFVSGSYDKSIRI  298 (433)
T ss_pred             ---ccceecC-----ccccceeeccccccceehhhhhhcccchhhcccceeEEEec-cCCCcc----hhccccccceEEE
Confidence               2456676     888889999999999999988764 4566677777777776 899999    8999999988777


Q ss_pred             CceEEEEEeCCCCCceeEEEecCC---CCcEEEeecCCcceeeccccceecccceee
Q 008058          326 ASVHTFVAYGLLLKPSFQKILVNS---GEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +..     .....     .-..|+   ..|.++.||.|.+|+ +|||.|+.+++|..
T Consensus       299 f~~-----~~~~S-----RdiYhtkRMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  299 FPV-----NHGHS-----RDIYHTKRMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKA  344 (433)
T ss_pred             eec-----CCCcc-----hhhhhHhhhheeeEEEEeccccEE-EecCCCcceeeeec
Confidence            431     11000     001232   358999999999999 99999999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.5e-25  Score=221.04  Aligned_cols=241  Identities=16%  Similarity=0.223  Sum_probs=181.3

Q ss_pred             EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------------------------------C---------
Q 008058          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------------------------------G---------  149 (579)
Q Consensus       111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------------------------------~---------  149 (579)
                      .+..+|.+.|+++.|++||+|||+||.||.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            33348999999999999999999999999999998754                                0         


Q ss_pred             -------------------ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008058          150 -------------------SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       150 -------------------~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  208 (579)
                                         ++++.|++|.+.|..+.|+.+ .+|++++  .+|++|++...++++.|. |...|+|++|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence                               123445689999999999965 5777777  999999999999999997 99999999999


Q ss_pred             c-CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          209 D-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       209 ~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      | |.+||++|+ -|+.|+||++...+..      ....-...++.++|.     |||++.++|+.+|.+++|+....+..
T Consensus       419 PvDDryFiSGS-LD~KvRiWsI~d~~Vv------~W~Dl~~lITAvcy~-----PdGk~avIGt~~G~C~fY~t~~lk~~  486 (712)
T KOG0283|consen  419 PVDDRYFISGS-LDGKVRLWSISDKKVV------DWNDLRDLITAVCYS-----PDGKGAVIGTFNGYCRFYDTEGLKLV  486 (712)
T ss_pred             ccCCCcEeecc-cccceEEeecCcCeeE------eehhhhhhheeEEec-----cCCceEEEEEeccEEEEEEccCCeEE
Confidence            9 677999987 6999999999886522      222334778899998     99999999999999999998776544


Q ss_pred             cccC---------CceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC--CcEEEe
Q 008058          288 RNTK---------ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG--EDINLN  356 (579)
Q Consensus       288 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~  356 (579)
                      ....         ..+ .++....+..+..    .+++.+.|..|+++|+        .......+++|+..  ..+.-.
T Consensus       487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~----~vLVTSnDSrIRI~d~--------~~~~lv~KfKG~~n~~SQ~~As  553 (712)
T KOG0283|consen  487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPD----EVLVTSNDSRIRIYDG--------RDKDLVHKFKGFRNTSSQISAS  553 (712)
T ss_pred             EeeeEeeccCccccCc-eeeeeEecCCCCC----eEEEecCCCceEEEec--------cchhhhhhhcccccCCcceeee
Confidence            2211         111 2333221222211    4666666666666553        11223335555332  357778


Q ss_pred             ecCCcceeeccccceecccceee
Q 008058          357 CSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       357 ~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |+.||++| +++|+|..+++|+.
T Consensus       554 fs~Dgk~I-Vs~seDs~VYiW~~  575 (712)
T KOG0283|consen  554 FSSDGKHI-VSASEDSWVYIWKN  575 (712)
T ss_pred             EccCCCEE-EEeecCceEEEEeC
Confidence            99999999 99999999999997

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=3.8e-24  Score=220.41  Aligned_cols=244  Identities=18%  Similarity=0.184  Sum_probs=191.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC------------------eEEEEecccccccccccccccccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG------------------QVQTEFADIASTETTSLYGNRLEREH   63 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (579)
                      +.++|  -|+.|||||+|||+||.|+.|.||+....                  ++...+.+|.                
T Consensus        68 h~~sv--~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----------------  129 (942)
T KOG0973|consen   68 HDGSV--NCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----------------  129 (942)
T ss_pred             ccCce--eEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC----------------
Confidence            35778  56699999999999999999999997731                  1233333333                


Q ss_pred             ccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 008058           64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCE  143 (579)
Q Consensus        64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i  143 (579)
                        ..+..++|.|.         +.++++++.|+.|.+||..+.+.+..+ .+|.+.|.++.|.|-|+||++-+.|++|++
T Consensus       130 --~DV~Dv~Wsp~---------~~~lvS~s~DnsViiwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikv  197 (942)
T KOG0973|consen  130 --SDVLDVNWSPD---------DSLLVSVSLDNSVIIWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKV  197 (942)
T ss_pred             --CccceeccCCC---------ccEEEEecccceEEEEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEE
Confidence              35556666663         889999999999999999999777555 789999999999999999999999999999


Q ss_pred             EeCCCCceeeEeecCC------CCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC-
Q 008058          144 IDPLTGSLLGKFRAST------KGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN-  210 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~------~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-  210 (579)
                      |++.+....+.+..+.      ..+..+.|+|||++|++..      ..+.|.+-.+.+.-..|-||..++.+++|+|. 
T Consensus       198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l  277 (942)
T KOG0973|consen  198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL  277 (942)
T ss_pred             EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence            9987776766665433      2678999999999999976      48999998888888899999999999999972 


Q ss_pred             -----C---------CE-EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          211 -----G---------KY-VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       211 -----~---------~~-l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                           .         .| +++.|+.|++|.||.....+..    .....-....+.-+.|+     |||..|++++.||+
T Consensus       278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl----~vi~~lf~~SI~DmsWs-----pdG~~LfacS~DGt  348 (942)
T KOG0973|consen  278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL----FVIHNLFNKSIVDMSWS-----PDGFSLFACSLDGT  348 (942)
T ss_pred             hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch----hhhhhhhcCceeeeeEc-----CCCCeEEEEecCCe
Confidence                 1         11 5555568999999998665533    11112223344456666     99999999999999


Q ss_pred             EEEEECCCc
Q 008058          276 CYIWYGQNI  284 (579)
Q Consensus       276 i~iwd~~~~  284 (579)
                      |.++.++..
T Consensus       349 V~~i~Fee~  357 (942)
T KOG0973|consen  349 VALIHFEEK  357 (942)
T ss_pred             EEEEEcchH
Confidence            999987654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-23  Score=176.75  Aligned_cols=245  Identities=20%  Similarity=0.283  Sum_probs=191.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE-----EEEeccccccccccccccccccccccCccceEEeeecc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      .+.|  .|.+|||+|+++|+|++|.+|++.......+     -.+|..|.+.+..+.|..+                  .
T Consensus        89 kgsi--yc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~------------------~  148 (350)
T KOG0641|consen   89 KGSI--YCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD------------------P  148 (350)
T ss_pred             CccE--EEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecC------------------C
Confidence            4678  7779999999999999999999975543322     2345556666655555433                  1


Q ss_pred             cccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           78 RKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                      ..     ++.+|++++ .|..|++-|..+|+....+ .+|++-|.++. +-+|-.+++|+.|.+|++||++-..++.++.
T Consensus       149 ~s-----~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~  221 (350)
T KOG0641|consen  149 ES-----GGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLD  221 (350)
T ss_pred             Cc-----CceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeecc
Confidence            11     144555543 4556888888999887665 68999998874 3367889999999999999999888887754


Q ss_pred             c--C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          157 A--S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~--~-----~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .  |     ...|.+++..|.|++|++|.  ....+||++.++.++.|..|...|.++.|+|...|+++++ .|..|++-
T Consensus       222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s-yd~~iklt  300 (350)
T KOG0641|consen  222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS-YDMKIKLT  300 (350)
T ss_pred             CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec-ccceEEEe
Confidence            2  1     24799999999999999998  7899999999999999999999999999999999999998 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      |++..-......+...+|.+..+.+-+.      |..--+++.+.|.++.+|-+
T Consensus       301 dlqgdla~el~~~vv~ehkdk~i~~rwh------~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  301 DLQGDLAHELPIMVVAEHKDKAIQCRWH------PQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             ecccchhhcCceEEEEeccCceEEEEec------CccceeeeccCcceEEEecc
Confidence            9987543323344556688888887766      67778889999999999965

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=3.5e-24  Score=186.94  Aligned_cols=275  Identities=13%  Similarity=0.121  Sum_probs=213.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +-||+.+  .|+.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+.++....+                        
T Consensus        10 ERplTqi--KyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~------------------------   63 (327)
T KOG0643|consen   10 ERPLTQI--KYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWD------------------------   63 (327)
T ss_pred             ccccceE--EecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCC------------------------
Confidence            4678666  99999999999999999999999899999999988877664433322                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCC-------CCc
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPL-------TGS  150 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----dg~v~iwd~~-------~~~  150 (579)
                         ...+++|+.|.++++||+.+|+++....  -..+|..+.|+++|++++.+..     .+.|.++|++       ..+
T Consensus        64 ---s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   64 ---SKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ---cceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence               6679999999999999999999988774  4578999999999998777643     4679999998       445


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      +...+..+...++.+-|.|-+++|++|.  |.|..||+++++ .+..-..|...|+.|.++||..++++++ .|.+-++|
T Consensus       139 p~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s-~Dttakl~  217 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS-KDTTAKLV  217 (327)
T ss_pred             ceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc-cCccceee
Confidence            6778888889999999999999999998  999999999985 4556678999999999999999999997 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC-------------eEEEEECCCceeecccCCc
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG-------------VCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg-------------~i~iwd~~~~~~~~~~~~~  293 (579)
                      |..+-+.+     .+. .....+++++++     |.-.+++.|+. +-             ..++|++-..+.+...+++
T Consensus       218 D~~tl~v~-----Kty-~te~PvN~aais-----P~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH  286 (327)
T KOG0643|consen  218 DVRTLEVL-----KTY-TTERPVNTAAIS-----PLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH  286 (327)
T ss_pred             eccceeeE-----EEe-eecccccceecc-----cccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence            99987644     222 233455666666     65555555543 21             1223333333445555555


Q ss_pred             eEEeeecccCcccccccchhhhhccccceecC
Q 008058          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      -..+.+.+ +.|+++    .-.+|..||-+++
T Consensus       287 FGPINsvA-fhPdGk----sYsSGGEDG~VR~  313 (327)
T KOG0643|consen  287 FGPINSVA-FHPDGK----SYSSGGEDGYVRL  313 (327)
T ss_pred             ccCcceeE-ECCCCc----ccccCCCCceEEE
Confidence            55555555 788888    7788888875554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.93  E-value=7.4e-24  Score=193.62  Aligned_cols=239  Identities=16%  Similarity=0.218  Sum_probs=186.6

Q ss_pred             CCCcccceEEEEcc-C--CCEEEEEeCCCcEEEEECCCCeEEE----EeccccccccccccccccccccccCccceEEee
Q 008058            2 GSSNIRDILTSFSP-A--LDYFAICSGDARIKIWDTLKGQVQT----EFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-d--g~~las~s~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      +++||+++  ++-. |  ...|++++.|.++++|.++.++...    .-++|...+.++....+                
T Consensus       143 ht~~ik~v--~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~s----------------  204 (423)
T KOG0313|consen  143 HTGPIKSV--AWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSS----------------  204 (423)
T ss_pred             CCcceeee--EEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCC----------------
Confidence            35677443  5432 2  2369999999999999988776432    22245544444333333                


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCC------------------------eEEEEecCCCCCCEEEEEEccCCC
Q 008058           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG------------------------QLKWRLSDCHPGGVSAISFATHGS  130 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~~~~~  130 (579)
                                 +..+++|+.|..|.+|+..+.                        +.....+.||..+|.++.|++ ..
T Consensus       205 -----------gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~  272 (423)
T KOG0313|consen  205 -----------GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT  272 (423)
T ss_pred             -----------CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence                       888999999999999993210                        011233579999999999998 66


Q ss_pred             EEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCCEEEE
Q 008058          131 CIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGAVRFM  205 (579)
Q Consensus       131 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~---~~~~~~~h~~~v~~l  205 (579)
                      .+++++.|.+|+.||+.++..+.++.+ +..++|++.+|..++|++|+  ..|++||.+++.   ...+|.+|.+.|.++
T Consensus       273 v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv  351 (423)
T KOG0313|consen  273 VIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV  351 (423)
T ss_pred             ceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe
Confidence            899999999999999999999888775 45789999999999999998  899999999763   356789999999999


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      .|+|...+.+.+++.|+++++||+++.+.    .++.+..+...+-++.|.      ++..|++|+.|.+|+|+..
T Consensus       352 kwsp~~~~~~~S~S~D~t~klWDvRS~k~----plydI~~h~DKvl~vdW~------~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  352 KWSPTNEFQLVSGSYDNTVKLWDVRSTKA----PLYDIAGHNDKVLSVDWN------EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ecCCCCceEEEEEecCCeEEEEEeccCCC----cceeeccCCceEEEEecc------CCceEEeccCcceEEEecc
Confidence            99998887766667899999999998763    346666666666677774      7889999999999999964

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.8e-24  Score=188.83  Aligned_cols=277  Identities=12%  Similarity=0.191  Sum_probs=217.2

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +-......+.+++.|.+.+||.+++|+|+..|.+|.+.++++.|++.                           +.++++
T Consensus       155 aa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s---------------------------~~L~lT  207 (481)
T KOG0300|consen  155 AADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNS---------------------------GLLLLT  207 (481)
T ss_pred             hhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccc---------------------------cceEEE
Confidence            44444457889999999999999999999999999999998888776                           788899


Q ss_pred             EECCCeEEEEEcc------C------------------------------C---e-EEEEecCCCCCCEEEEEEccCCCE
Q 008058           92 GTGGGDVLALAVS------A------------------------------G---Q-LKWRLSDCHPGGVSAISFATHGSC  131 (579)
Q Consensus        92 ~~~~g~i~iwd~~------~------------------------------~---~-~~~~~~~~h~~~V~~l~~~~~~~~  131 (579)
                      ++.|++-.||...      .                              +   . .+.+ +.+|.+.|.+..|-..|+.
T Consensus       208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~-ltgH~~vV~a~dWL~gg~Q  286 (481)
T KOG0300|consen  208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR-LTGHRAVVSACDWLAGGQQ  286 (481)
T ss_pred             ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee-eeccccceEehhhhcCcce
Confidence            9999998888621      1                              0   0 0112 3579999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEe
Q 008058          132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       132 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~  208 (579)
                      +++++.|.+..+||+++|..+..+.+|....+.++-+|..+++++++  .+.++||.+.. ..+..|+||...|+++.|.
T Consensus       287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~  366 (481)
T KOG0300|consen  287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN  366 (481)
T ss_pred             eeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence            99999999999999999999999999999999999999999999998  79999999853 4578899999999999999


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+.+ +++++ +|++|++||+++....    +.++.... .+.-+..+     ..+..|+.-.++..|++||+...+.-+
T Consensus       367 ~dd~-vVSgS-DDrTvKvWdLrNMRsp----lATIRtdS-~~NRvavs-----~g~~iIAiPhDNRqvRlfDlnG~RlaR  434 (481)
T KOG0300|consen  367 TDDR-VVSGS-DDRTVKVWDLRNMRSP----LATIRTDS-PANRVAVS-----KGHPIIAIPHDNRQVRLFDLNGNRLAR  434 (481)
T ss_pred             cCCc-eeecC-CCceEEEeeeccccCc----ceeeecCC-ccceeEee-----cCCceEEeccCCceEEEEecCCCcccc
Confidence            8764 67776 7999999999987532    22332222 22333443     455677777788899999986443321


Q ss_pred             ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc--ceeec
Q 008058          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG--VLLPM  366 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg--~~l~~  366 (579)
                       .+.             .                                     .-.||..-|.|++|..+-  +-| +
T Consensus       435 -lPr-------------t-------------------------------------sRqgHrRMV~c~AW~eehp~cnL-f  462 (481)
T KOG0300|consen  435 -LPR-------------T-------------------------------------SRQGHRRMVTCCAWLEEHPACNL-F  462 (481)
T ss_pred             -CCc-------------c-------------------------------------cccccceeeeeeeccccCccccc-c
Confidence             110             0                                     112677788999998654  456 8


Q ss_pred             cccceecccceeee
Q 008058          367 SQSLLKSKRGRYVQ  380 (579)
Q Consensus       367 s~s~d~~~~~w~~~  380 (579)
                      +++.|..+.-|++.
T Consensus       463 tcGFDR~v~gW~in  476 (481)
T KOG0300|consen  463 TCGFDRMVAGWKIN  476 (481)
T ss_pred             cccccceeeeeEec
Confidence            99999999999883

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=3.1e-24  Score=198.07  Aligned_cols=234  Identities=16%  Similarity=0.203  Sum_probs=196.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|.  .+.|.+++.++++++.|+.+++|++...+...++.+|...+....|...                        
T Consensus       219 ~g~it--~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~------------------------  272 (459)
T KOG0288|consen  219 LGNIT--SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLS------------------------  272 (459)
T ss_pred             CCCcc--eeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcc------------------------
Confidence            36784  4499999999999999999999999999999999988887776655443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ...+++|+.|.+|++||+....+..+++.+  +.+.+++.+  ...+++|-.|++|++||.++..+......+. .|
T Consensus       273 ---~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~v  344 (459)
T KOG0288|consen  273 ---HSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RV  344 (459)
T ss_pred             ---ccceeeccccchhhhhhhhhhheecccccc--ccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ce
Confidence               334899999999999999999988777643  556777765  4568899999999999999999999988765 89


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      +++..+++|..+.+++  .++.+.|+++.+....+...    ...++.+.|+|++.|+++|+ .||.|+||++.+++.. 
T Consensus       345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-~dgsv~iW~v~tgKlE-  422 (459)
T KOG0288|consen  345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-ADGSVYIWSVFTGKLE-  422 (459)
T ss_pred             eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc-CCCcEEEEEccCceEE-
Confidence            9999999999999998  89999999998877776432    23488999999999999988 6999999999999855 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw  279 (579)
                        .+....+....+.++.|+     |.|..+++++.++.+.+|
T Consensus       423 --~~l~~s~s~~aI~s~~W~-----~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  423 --KVLSLSTSNAAITSLSWN-----PSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             --EEeccCCCCcceEEEEEc-----CCCchhhcccCCcceEec
Confidence              344444444467888888     999999999999999999

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=8e-24  Score=198.10  Aligned_cols=298  Identities=16%  Similarity=0.157  Sum_probs=217.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      -+|  ++|+++||+.+.++++.||+|.=|++.+|+.... ++..  .+...         |                   
T Consensus       143 ~s~--~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev~k~---------~-------------------  190 (479)
T KOG0299|consen  143 LSV--TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EVLKS---------H-------------------  190 (479)
T ss_pred             Ccc--eEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hhhhh---------c-------------------
Confidence            456  7889999999999999999999999999886522 2110  00000         0                   


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                                             +........+|...+.+++.++||+||++|+.|..|.|||.++.+.++.|.+|.+.|
T Consensus       191 -----------------------~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V  247 (479)
T KOG0299|consen  191 -----------------------GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAV  247 (479)
T ss_pred             -----------------------cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccce
Confidence                                   000000003799999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|-.....+++++  +.|++|+++....+.++.||.+.|.+|....-++.+-+++ .|+++++|++.....      
T Consensus       248 ~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~eesq------  320 (479)
T KOG0299|consen  248 SSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEESQ------  320 (479)
T ss_pred             eeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEeccccce------
Confidence            9999987777777776  8999999999989999999999999998887777665555 799999999955432      


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE------------eeecccCccccc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL------------SSSEDVNSKSQK  308 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  308 (579)
                      ..+..+...+.|++|-      +..++++|+.+|.|.+|++...+++...+-....            +.+.. ..+...
T Consensus       321 lifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla-~i~~sd  393 (479)
T KOG0299|consen  321 LIFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLA-VIPGSD  393 (479)
T ss_pred             eeeeCCCCCeeeEEEe------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeE-ecccCc
Confidence            2334556678888885      7788999999999999999888877543321111            11111 122222


Q ss_pred             ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                          .+++|+.+|.+++|.    +..|......+..+. -.+.|++++|+++|+++.+..+.....=-|-.
T Consensus       394 ----L~asGS~~G~vrLW~----i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~  455 (479)
T KOG0299|consen  394 ----LLASGSWSGCVRLWK----IEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC  455 (479)
T ss_pred             ----eEEecCCCCceEEEE----ecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence                777888888766643    222322233444444 34589999999999977455565555545543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.4e-23  Score=194.35  Aligned_cols=281  Identities=17%  Similarity=0.161  Sum_probs=209.5

Q ss_pred             EEeCC-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC-eEE
Q 008058           22 ICSGD-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG-DVL   99 (579)
Q Consensus        22 s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-~i~   99 (579)
                      +++.| .++.+||+.+|.....|++.....           +|.-..                .++.+++++.... .|.
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~-----------~~sl~~----------------l~~~yllsaq~~rp~l~   64 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQ-----------AASLTA----------------LNNEYLLSAQLKRPLLH   64 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCccccc-----------chhhhh----------------hchhheeeecccCcccc
Confidence            34445 459999999999998887531100           000000                0134555555544 499


Q ss_pred             EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-
Q 008058          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-  178 (579)
Q Consensus       100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-  178 (579)
                      +|.+.......+. .--.++|.++.-+|+|.+++.|+..|.+++|.+.+|..+..+.+|-..|+|+.|+.||.++++|+ 
T Consensus        65 vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk  143 (476)
T KOG0646|consen   65 VWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK  143 (476)
T ss_pred             ccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence            9998876554322 22457899999999999999998999999999999999999999999999999999999999999 


Q ss_pred             -CeEEEEECC---------CCeeeEEeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          179 -GQLKTFNCS---------DHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       179 -g~i~vwd~~---------~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                       |.|.+|++.         +-+++..|..|.-+|+.+...+.  ..++++++ .|+++++||+..+...     .+.. .
T Consensus       144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL-----lti~-f  216 (476)
T KOG0646|consen  144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL-----LTIT-F  216 (476)
T ss_pred             CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee-----EEEe-c
Confidence             999999874         34678899999999999988764  45788887 7999999999998644     3332 3


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      +..+.++..+     |.+..+++|+.+|.|.+.++.......      ..+.        .+                  
T Consensus       217 p~si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~------~~v~--------~k------------------  259 (476)
T KOG0646|consen  217 PSSIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQS------AGVN--------QK------------------  259 (476)
T ss_pred             CCcceeEEEc-----ccccEEEecCCcceEEeeehhcCCccc------cccc--------cc------------------
Confidence            3445667776     999999999999999998864432100      0000        00                  


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCC--CcEEEeecCCcceeeccccceecccceeeeec
Q 008058          327 SVHTFVAYGLLLKPSFQKILVNSG--EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                             .+..-...+..+.||.+  +|+|++.+-||.+| +||++|+.+.+|++..+
T Consensus       260 -------~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL-lSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  260 -------GRHEENTQINVLVGHENESAITCLAISTDGTLL-LSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             -------ccccccceeeeeccccCCcceeEEEEecCccEE-EeeCCCCCEEEEecchH
Confidence                   00111233446778888  89999999999999 99999999999999643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.92  E-value=1.9e-21  Score=183.97  Aligned_cols=345  Identities=11%  Similarity=0.075  Sum_probs=243.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccccccc---ccCccceEEeeeccccccc---
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREH---LSVDYTCMKWLSVDRKKKR---   82 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~w~~~~~~~~~---   82 (579)
                      +|++|.++|+ +++|..+|.|.||+..+.+..+....|.+.+.++....+   |.   -..+...+.|...-.+.+.   
T Consensus       250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~---GtllSGgKDRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRD---GTLLSGGKDRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecC---ccEeecCccceEEeccccccccccccC
Confidence            8889999997 679999999999999888877776688888877666544   22   1334456677632111000   


Q ss_pred             ----------ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058           83 ----------KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        83 ----------~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  152 (579)
                                ..+..-|++|+..+.|.-=+++.+-.+..  .+|....+.++.+|+...+++++.|+.+++|+  ..+.+
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence                      00122277888888877777776655422  47999999999999999999999999999999  55655


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      .+.. -..++.|+.|+|.| .++.|.  |...+.|.++...+..-.. ..+++.++|+|+|.+|+.++ .|+.|++|.+.
T Consensus       402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~Vs  477 (626)
T KOG2106|consen  402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGS-HDNHIYIYRVS  477 (626)
T ss_pred             EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEec-CCCeEEEEEEC
Confidence            5544 35688999999999 888887  9999999999666554444 88999999999999999987 79999999998


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee-ecc---cC-cc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-SED---VN-SK  305 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~---~~-~~  305 (579)
                      .....   ....-.++...+..+.|+     +|++++.+-+.|-.|..|.......+...+..+.... +..   .+ ..
T Consensus       478 ~~g~~---y~r~~k~~gs~ithLDwS-----~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s  549 (626)
T KOG2106|consen  478 ANGRK---YSRVGKCSGSPITHLDWS-----SDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGS  549 (626)
T ss_pred             CCCcE---EEEeeeecCceeEEeeec-----CCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEeccc
Confidence            76543   222333444778888888     9999999999999999995444444433222221110 000   00 11


Q ss_pred             ccc--------ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058          306 SQK--------SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       306 ~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      ++.        .....+++|...|.++++..     -.......+.+..+|...|.+++|+-+..++ ++.+.|.++..|
T Consensus       550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y-----Pc~s~rA~~he~~ghs~~vt~V~Fl~~d~~l-i~tg~D~Si~qW  623 (626)
T KOG2106|consen  550 DGTDINAVARSHCEKLLASGDDFGKVHLFSY-----PCSSPRAPSHEYGGHSSHVTNVAFLCKDSHL-ISTGKDTSIMQW  623 (626)
T ss_pred             CCchHHHhhhhhhhhhhhccccCceEEEEcc-----ccCCCcccceeeccccceeEEEEEeeCCceE-EecCCCceEEEE
Confidence            111        01124444444444433221     2244556777889999999999999888777 565699999999


Q ss_pred             ee
Q 008058          378 YV  379 (579)
Q Consensus       378 ~~  379 (579)
                      .+
T Consensus       624 ~l  625 (626)
T KOG2106|consen  624 RL  625 (626)
T ss_pred             Ee
Confidence            76

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.9e-22  Score=175.66  Aligned_cols=234  Identities=15%  Similarity=0.249  Sum_probs=193.9

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.|.++  +|+| +.+.|++++.|.+|++||.+.+++...+.....                   .-.+.|.|.      
T Consensus        65 ~svdql--~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-------------------ni~i~wsp~------  117 (313)
T KOG1407|consen   65 DSVDQL--CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE-------------------NINITWSPD------  117 (313)
T ss_pred             cchhhh--eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc-------------------ceEEEEcCC------
Confidence            456555  7777 557999999999999999999999887753222                   123555554      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.+++++..|..|...|.++.+.....  .....+..++|+-++..|+.....|+|.|.....-++++.+++|....
T Consensus       118 ---g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC  192 (313)
T KOG1407|consen  118 ---GEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC  192 (313)
T ss_pred             ---CCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence               788999999999999999998876544  345678899999888888888888999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .||.|+|+|+++|+|+  ..+.+||++.--+++.+..+.-+|..+.|+.||++|++++ +|..|-|=++++|...     
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS-EDh~IDIA~vetGd~~-----  266 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS-EDHFIDIAEVETGDRV-----  266 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC-ccceEEeEecccCCeE-----
Confidence            9999999999999999  7999999999989999999999999999999999999987 8999999999998743     


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcC---------CeEEEEEC
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---------GVCYIWYG  281 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~  281 (579)
                      ..+.+.+.... ++|.     |....||-++.|         |++++|-+
T Consensus       267 ~eI~~~~~t~t-VAWH-----Pk~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  267 WEIPCEGPTFT-VAWH-----PKRPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             EEeeccCCcee-EEec-----CCCceeeEEecCCCCccccccceeEEecC
Confidence            55656555544 4554     888888887664         46666644

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=3.1e-23  Score=203.25  Aligned_cols=269  Identities=19%  Similarity=0.279  Sum_probs=201.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE--EEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.||.+  ++.+ +..++++|.||++++|+-..++.+  ..+.++.+-+.                 ..+++...+   
T Consensus        14 ~~DVr~v--~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~-----------------~~i~y~e~~---   70 (745)
T KOG0301|consen   14 KSDVRAV--AVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIA-----------------NSICYAESD---   70 (745)
T ss_pred             ccchhee--EecC-CeEEeecCCCCceeeeeccCcccccceecccCcceee-----------------ccceecccc---
Confidence            4566666  5554 448999999999999997655543  23433332221                 113333221   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +..+++|+.|..|.+|..........+ .+|...|+++....++. +++||.|.++++|-.  +++...+.+|..
T Consensus        71 -----~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   71 -----KGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             -----CcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcch
Confidence                 556999999999999999999988655 78999999999887776 999999999999985  677778999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|.+++.-|++ .+++|+  .+|++|.-  ++.+++|.+|..-|+++++-+++. |++++ .||.|+.|++...      
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScs-NDg~Ir~w~~~ge------  210 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCS-NDGSIRLWDLDGE------  210 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeec-CCceEEEEeccCc------
Confidence            99999999988 666776  89999975  788999999999999999998864 67887 7999999999543      


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcc
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAK  318 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  318 (579)
                      ++..+..+...+.++...     +++..++++++|++++||+.....+.-.++......+  .....      .-|++|+
T Consensus       211 ~l~~~~ghtn~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa--~~L~N------gDIvvg~  277 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMA-----LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSA--KVLLN------GDIVVGG  277 (745)
T ss_pred             eeeeeeccceEEEEEEec-----CCCCeEEEecCCceEEEeecCceEEEEecCccceEEE--EEeeC------CCEEEec
Confidence            445666666666666644     7889999999999999999874444444443222211  11111      2688889


Q ss_pred             ccceecCCc
Q 008058          319 LQDIVKPAS  327 (579)
Q Consensus       319 ~~~~~~~~~  327 (579)
                      .||.+|++.
T Consensus       278 SDG~VrVfT  286 (745)
T KOG0301|consen  278 SDGRVRVFT  286 (745)
T ss_pred             cCceEEEEE
Confidence            988877654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.8e-22  Score=180.43  Aligned_cols=223  Identities=14%  Similarity=0.171  Sum_probs=178.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +.++++|+.|-+|+|||+.+......+. .|.+.|+++.|.++-.  .|++|+.||.|.+|+.....++.++++|.+.|+
T Consensus        53 ~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt  131 (362)
T KOG0294|consen   53 GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT  131 (362)
T ss_pred             ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccc
Confidence            7789999999999999999988876664 5999999999998765  899999999999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      .++++|.|++.++.+  +.+++||+-+|+.-..+. -....+.+.|+|.|.+++.++  -+.|-+|.+......     .
T Consensus       132 ~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A~v~-----~  203 (362)
T KOG0294|consen  132 DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNASVF-----R  203 (362)
T ss_pred             eeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEe--ccEEEEEecccHhHh-----h
Confidence            999999999888766  899999999987654443 122334599999999888876  456999999876532     1


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .+..+ ..+.++.|      -++..+++|.+|+.|.+||.++...+.                                 
T Consensus       204 ~i~~~-~r~l~~~~------l~~~~L~vG~d~~~i~~~D~ds~~~~~---------------------------------  243 (362)
T KOG0294|consen  204 EIENP-KRILCATF------LDGSELLVGGDNEWISLKDTDSDTPLT---------------------------------  243 (362)
T ss_pred             hhhcc-ccceeeee------cCCceEEEecCCceEEEeccCCCccce---------------------------------
Confidence            22223 33445555      478999999999999999975532211                                 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe--ecCCcceeeccccceecccceeee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN--CSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~--~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                            .+.+|+..|-.+.  -.|++.+| +|+|.||.|++|++.
T Consensus       244 ----------------------~~~AH~~RVK~i~~~~~~~~~~l-vTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  244 ----------------------EFLAHENRVKDIASYTNPEHEYL-VTASSDGFIKVWDID  281 (362)
T ss_pred             ----------------------eeecchhheeeeEEEecCCceEE-EEeccCceEEEEEcc
Confidence                                  3446777777776  34778899 999999999999984

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.3e-23  Score=208.34  Aligned_cols=236  Identities=14%  Similarity=0.245  Sum_probs=182.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +..++-+.++.++.. .++||.+....    +...++.               .......+..+.|....        .+
T Consensus        46 s~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~---------------kqn~~~S~~DVkW~~~~--------~N  101 (839)
T KOG0269|consen   46 SVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKT---------------KQNKFYSAADVKWGQLY--------SN  101 (839)
T ss_pred             eecCCcceeEEeccc-ceeeEeeCcccCCcceeeeccc---------------ccceeeehhhcccccch--------hh
Confidence            667777778877753 67777665332    2222211               11223345567887544        78


Q ss_pred             EEEEEECCCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           88 LLVLGTGGGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +|++++.+|.|.+||+..   ++.+ ..+.+|...++++.|++. ..+|++|+.||+|++||++..+...++.+....|.
T Consensus       102 lIAT~s~nG~i~vWdlnk~~rnk~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiR  180 (839)
T KOG0269|consen  102 LIATCSTNGVISVWDLNKSIRNKLL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIR  180 (839)
T ss_pred             hheeecCCCcEEEEecCccccchhh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhh
Confidence            999999999999999987   3333 345789999999999984 56799999999999999999999999998888999


Q ss_pred             EEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          164 CMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       164 ~l~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+.|+| .+..++++.  |.+++||++.. ++..++..|.++|.++.|+|++.+|++|| .|+.|+||++.+.+...   
T Consensus       181 DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~---  256 (839)
T KOG0269|consen  181 DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP---  256 (839)
T ss_pred             ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc---
Confidence            999999 567888887  99999999964 56778899999999999999999999998 79999999999876542   


Q ss_pred             EEeeecCceeeEeEEecCCcccCCC-cEEEEEEc--CCeEEEEECC
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISE--TGVCYIWYGQ  282 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~--dg~i~iwd~~  282 (579)
                      ..++ +....+..+.|.     |+. .+|++++.  |-.|+|||+.
T Consensus       257 ~~tI-nTiapv~rVkWR-----P~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  257 KHTI-NTIAPVGRVKWR-----PARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             eeEE-eecceeeeeeec-----cCccchhhhhhccccceEEEEeec
Confidence            2222 345566777787     554 45666654  7799999974

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=5e-23  Score=195.03  Aligned_cols=291  Identities=13%  Similarity=0.144  Sum_probs=206.7

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADGM  140 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~  140 (579)
                      ...++.+...+.         |..+++|+-|.+|++||+..-.    ....+.......|+++.|++.|..|++.+....
T Consensus       167 tk~Vsal~~Dp~---------GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq  237 (641)
T KOG0772|consen  167 TKIVSALAVDPS---------GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ  237 (641)
T ss_pred             ceEEEEeeecCC---------CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence            444555555554         8889999999999999997532    233444455568999999999999999999999


Q ss_pred             EEEEeCCCCceeeE-------------eecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee-eEEee-----cC
Q 008058          141 VCEIDPLTGSLLGK-------------FRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK-MQKFS-----GH  198 (579)
Q Consensus       141 v~iwd~~~~~~~~~-------------~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~-~~~~~-----~h  198 (579)
                      .+++|- .|..+..             -++|...++|.+|+|+.+ .+++++  |++++||+...+. ...|+     +.
T Consensus       238 akl~DR-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  238 AKLLDR-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             eeEEcc-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            999994 4543332             246888999999999654 555665  9999999986432 33332     33


Q ss_pred             CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       199 ~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                      .-+++.++|+|+|+.+++++ .||.|.+|+..........++.........++++.|+     ++|++|++-+.|+++++
T Consensus       317 Rv~~tsC~~nrdg~~iAagc-~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-----~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGC-LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-----YDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             ccCceeeecCCCcchhhhcc-cCCceeeeecCCcccccceEeeeccCCCCceeEEEec-----cccchhhhccCCCceee
Confidence            45789999999999988887 7999999998766544333333333445578999998     99999999999999999


Q ss_pred             EECCCceee-cccCCceEE-eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe
Q 008058          279 WYGQNIEEL-RNTKATKIL-SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN  356 (579)
Q Consensus       279 wd~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~  356 (579)
                      ||++..+.- ....+.... -.....|+|+.+    .|++|...-.-.. .| .+..+....+....++-.....|..+.
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k----li~TGtS~~~~~~-~g-~L~f~d~~t~d~v~ki~i~~aSvv~~~  464 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK----LILTGTSAPNGMT-AG-TLFFFDRMTLDTVYKIDISTASVVRCL  464 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCce----EEEecccccCCCC-Cc-eEEEEeccceeeEEEecCCCceEEEEe
Confidence            999877542 221111111 111224788888    8888876421111 23 333444445555666667777899999


Q ss_pred             ecCCcceeeccccceeccccee
Q 008058          357 CSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       357 ~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      |.|.=+.+ +.|+.||++++.-
T Consensus       465 WhpkLNQi-~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  465 WHPKLNQI-FAGSGDGTAHVYY  485 (641)
T ss_pred             ecchhhhe-eeecCCCceEEEE
Confidence            99998888 6666799988874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=8.2e-23  Score=191.46  Aligned_cols=255  Identities=15%  Similarity=0.240  Sum_probs=186.8

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .+.|+.+  .+-|.. ..+|+++..+.|.|||..+..-.....+        .+.|++ ..||... ...+.|.+..   
T Consensus       124 ~gEVnRa--RymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------~~~Pdl~L~gH~~e-g~glsWn~~~---  189 (422)
T KOG0264|consen  124 DGEVNRA--RYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------ECRPDLRLKGHEKE-GYGLSWNRQQ---  189 (422)
T ss_pred             Cccchhh--hhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------cCCCceEEEeeccc-cccccccccc---
Confidence            3556555  777755 5777888899999999864332211110        111221 2355442 4457887765   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC--CCce
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL--TGSL  151 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~--~~~~  151 (579)
                           ...+++++.++.|.+||+.....      ....+.+|...|.+++|++ +...|.+++.|+.+.+||++  +.++
T Consensus       190 -----~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  190 -----EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             -----ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence                 66799999999999999975432      2345679999999999999 45568899999999999999  5566


Q ss_pred             eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEE
Q 008058          152 LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIAL  226 (579)
Q Consensus       152 ~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~v  226 (579)
                      ....++|.+.|+|++|+| ++.+||+|+  ++|.+||+++. +++.++.+|...|.++.|+|... .|+++| .|+.+.+
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~v  343 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNV  343 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEE
Confidence            677889999999999999 566777887  99999999974 56889999999999999999765 455555 8999999


Q ss_pred             EEcCCCccc---------cceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECC
Q 008058          227 WRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       227 wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~  282 (579)
                      ||+..-...         ..+..+....+...+.-..|+     |+. -.|+++++|+.++||...
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWn-----p~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWN-----PNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCC-----CCCCeEEEEecCCceEEEeecc
Confidence            999653221         123445555555555555555     554 557788999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=188.93  Aligned_cols=237  Identities=17%  Similarity=0.196  Sum_probs=197.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|+|+...+++++.|..|+||......+......|..++......+.                           +.+
T Consensus       265 ~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~t---------------------------geY  317 (506)
T KOG0289|consen  265 TSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPT---------------------------GEY  317 (506)
T ss_pred             EEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccC---------------------------CcE
Confidence            56699999999999999999999999888777777888877776665555                           899


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      ++.++.+|...+.|++++..+...... ..-.+++.+|+|||-.|.+|..||.|++||+.++..+..|.+|.++|..++|
T Consensus       318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEe
Confidence            999999999999999999987555332 2345899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +.+|-+|+++.  +.|++||++..+...++.-. ..++.++.|.+.|++|+++| .|=+|++++-.+..   +.++..+.
T Consensus       398 sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~---W~~~~~~~  473 (506)
T KOG0289|consen  398 SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKS---WTEIKELA  473 (506)
T ss_pred             ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEeccccc---ceeeehhh
Confidence            99999999998  78999999988887777533 24699999999999999987 46556665533332   33455555


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      .+....+++.|.     ...+++++++.|..++++.+
T Consensus       474 ~~sg~st~v~Fg-----~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  474 DHSGLSTGVRFG-----EHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             hcccccceeeec-----ccceEEeeccchhheEEeec
Confidence            555667888887     77899999999999888854

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=180.44  Aligned_cols=248  Identities=15%  Similarity=0.171  Sum_probs=179.3

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +.||.||+.|.+||+|+.||.|.|||..+...-..+..|.-                  ++++++|.+.         ++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~------------------pi~sl~WS~d---------gr   78 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR------------------PITSLCWSRD---------GR   78 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc------------------ceeEEEecCC---------CC
Confidence            57889999999999999999999999998876666654443                  4556666654         88


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeecCC----CCe
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRAST----KGI  162 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~----~~v  162 (579)
                      .|++++.|..|.+||+..|.+..++.  ..++|+.+.|+|..+. ++.+-.+..-.+-++..++....-....    ...
T Consensus        79 ~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   79 KLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSA  156 (405)
T ss_pred             EeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccc
Confidence            89999999999999999999887774  5689999999995433 3333344445555554432211111111    122


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc----
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ----  235 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~----  235 (579)
                      .+..|++.|+++++|.  |.+.+||..+.+++..++-.. ..|.++.|+..|++|+.-+ .|+.|+.|++..-...    
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt-sDRvIR~ye~~di~~~~r~~  235 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT-SDRVIRTYEISDIDDEGRDG  235 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec-CCceEEEEehhhhcccCccC
Confidence            3446889999999998  999999999999998887665 7899999999999999988 6999999998732111    


Q ss_pred             cceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeeccc
Q 008058          236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~  290 (579)
                      .......+.  -+......++|+     .+|.|+++++. -..++||.-..|..++.+
T Consensus       236 e~e~~~K~qDvVNk~~Wk~ccfs-----~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  236 EVEPEHKLQDVVNKLQWKKCCFS-----GDGEYVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             CcChhHHHHHHHhhhhhhheeec-----CCccEEEeccccceeEEEEecCCcceeeee
Confidence            000101111  122234456665     89999998875 457999988777766544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.7e-22  Score=179.47  Aligned_cols=257  Identities=14%  Similarity=0.178  Sum_probs=183.9

Q ss_pred             cccceEEEEcc-CCCEEEEEeCCCcEEEEECCC-CeEEE-EeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSP-ALDYFAICSGDARIKIWDTLK-GQVQT-EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .|  -+++||| ...+++.||.||+||+|+++. |.... ....|.+                  ++-+++|...     
T Consensus        29 sI--S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~------------------PvL~v~Wsdd-----   83 (347)
T KOG0647|consen   29 SI--SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG------------------PVLDVCWSDD-----   83 (347)
T ss_pred             ch--heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC------------------CeEEEEEccC-----
Confidence            46  3449999 555777899999999999986 34322 1223333                  4456666554     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +..+++|+.|+.+++||+.+++.. ++ ..|.++|..+.|-+...  .|++|+-|++|+.||++...++.++.- .
T Consensus        84 ----gskVf~g~~Dk~~k~wDL~S~Q~~-~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-P  156 (347)
T KOG0647|consen   84 ----GSKVFSGGCDKQAKLWDLASGQVS-QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-P  156 (347)
T ss_pred             ----CceEEeeccCCceEEEEccCCCee-ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-c
Confidence                778999999999999999999765 33 57999999999987655  699999999999999999998888774 4


Q ss_pred             CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEE-e-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--
Q 008058          160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQK-F-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--  235 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~-~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~--  235 (579)
                      +.++++..-..--.++++.+.|.+|+++++..... . ..-+-.+++++..+|....+.++ -+|.+.+..++.+...  
T Consensus       157 eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs-iEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  157 ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS-IEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee-ecceEEEEecCCCCccCc
Confidence            57777776543223333348999999987643211 1 11234578999988888778887 6999999999886321  


Q ss_pred             -cceeEEee---ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058          236 -SASCVLAM---EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       236 -~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                       ..+|....   ....+.+..++|.     |....|++++.||+..+||-+....+...+.....+.+
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~Fh-----P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc  298 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFH-----PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC  298 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEee-----cccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence             12232211   1123456667776     88899999999999999998887777766555444443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=6.6e-23  Score=176.74  Aligned_cols=242  Identities=16%  Similarity=0.221  Sum_probs=186.3

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .|.+.  ..+--|.+||||+.|++|+|+.++++   ..+.++++|.+++..+.|.++   .                   
T Consensus        13 ~IHda--~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP---k-------------------   68 (299)
T KOG1332|consen   13 MIHDA--QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP---K-------------------   68 (299)
T ss_pred             hhhHh--hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc---c-------------------
Confidence            34444  33336899999999999999998754   467889999999988888766   0                   


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC---ceeeEe
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG---SLLGKF  155 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~---~~~~~~  155 (579)
                         -+.+|++++.||.|.||.-..++.... ....|...|++++|.|.  |-.|++++.||.|.+.+.++.   ...+..
T Consensus        69 ---~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~  145 (299)
T KOG1332|consen   69 ---FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV  145 (299)
T ss_pred             ---cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence               189999999999999999988854321 12568999999999985  456899999999999987654   233446


Q ss_pred             ecCCCCeeEEEEccC---C-----------CEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCC----CE
Q 008058          156 RASTKGISCMAVSSD---G-----------KMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNG----KY  213 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~---g-----------~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~----~~  213 (579)
                      .+|.-.|++++|.|.   |           +.|++|+  +.|+||+..+++  .-++|.+|.+.|+.++|.|.-    .+
T Consensus       146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~  225 (299)
T KOG1332|consen  146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST  225 (299)
T ss_pred             hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence            779999999999986   5           5688888  899999998763  345689999999999999963    47


Q ss_pred             EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      +++++ .||++.||..+..... .+... +..-...+-.+.|+     ..|+.|++++.|+.+.+|.-
T Consensus       226 iAS~S-qDg~viIwt~~~e~e~-wk~tl-l~~f~~~~w~vSWS-----~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  226 IASCS-QDGTVIIWTKDEEYEP-WKKTL-LEEFPDVVWRVSWS-----LSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             eEEec-CCCcEEEEEecCccCc-ccccc-cccCCcceEEEEEe-----ccccEEEEecCCcEEEEEEe
Confidence            88887 8999999988743221 11111 22233445556676     89999999999999999963

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.4e-22  Score=203.07  Aligned_cols=235  Identities=14%  Similarity=0.223  Sum_probs=188.0

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|.|+|++|++|+.||.|++|+...-. ....+.-+                  +.   .+.|....        .+.
T Consensus        18 ~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~------------------g~---~v~~ia~~--------s~~   68 (933)
T KOG1274|consen   18 LICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDIS------------------GE---LVSSIACY--------SNH   68 (933)
T ss_pred             EEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhcc------------------Cc---eeEEEeec--------ccc
Confidence            45999999999999999999999876542 11111100                  11   12222221        567


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.+++|.+|....++.-. ++...+-++++++|+.+|++++.||.|-.|++.++.+......+++|.++|.++.|+
T Consensus        69 f~~~s~~~tv~~y~fps~~~~~-iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~  147 (933)
T KOG1274|consen   69 FLTGSEQNTVLRYKFPSGEEDT-ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD  147 (933)
T ss_pred             eEEeeccceEEEeeCCCCCccc-eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc
Confidence            9999999999999998876532 223356789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecC--------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |++++||+.+  |.|++||++++.+..++.+-        ...+..++|+|+|..++..+ -|+.|++|+..+....   
T Consensus       148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~---  223 (933)
T KOG1274|consen  148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQ---  223 (933)
T ss_pred             CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeh---
Confidence            9999999987  99999999998876666432        34567889999977777776 5999999999988754   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      ..+...+....+.++.|+     |+|+|||+++.||.|.|||.++
T Consensus       224 f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWS-----PNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEc-----CCCcEEeeeccCCcEEEEeccc
Confidence            333444555557888888     9999999999999999999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-21  Score=174.57  Aligned_cols=268  Identities=10%  Similarity=0.089  Sum_probs=205.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +..+++++.|..+++||..+++.+..+. .+.-.|..++|......++.++.  |.+|+..++.+.+.++.|.+|...|+
T Consensus        26 G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~  104 (311)
T KOG1446|consen   26 GLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVN  104 (311)
T ss_pred             CCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEE
Confidence            8889999999999999999999987774 45567888888776667776665  88999999999999999999999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++.+|-+..+++++  ++|++||++..++..-+.-...+  .++|.|+|-++|++. +...|++||++.-..... ..+
T Consensus       105 sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF-~tf  180 (311)
T KOG1446|consen  105 SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPF-TTF  180 (311)
T ss_pred             EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec-CCCeEEEEEecccCCCCc-eeE
Confidence            999999999999999  89999999987776555433333  478999998888876 556999999998654321 223


Q ss_pred             eee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce--EEeeecccCcccccccchhhhhcc
Q 008058          242 AME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK--ILSSSEDVNSKSQKSATAAIFAAK  318 (579)
Q Consensus       242 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~  318 (579)
                      .+. .....+..+.|+     |||++|+.++..+.+++.|.-+|..+.+.....  ........|.|+++    .|+.++
T Consensus       181 ~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~----Fvl~gs  251 (311)
T KOG1446|consen  181 SITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK----FVLSGS  251 (311)
T ss_pred             ccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc----EEEEec
Confidence            333 334455667777     999999999999999999999998765543322  22223344789998    999999


Q ss_pred             ccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008058          319 LQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       319 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      .||.+..|+.        .....+..+.+ +.+++.++.|.|.-..+ +|++  ..+.+|=
T Consensus       252 ~dg~i~vw~~--------~tg~~v~~~~~~~~~~~~~~~fnP~~~mf-~sa~--s~l~fw~  301 (311)
T KOG1446|consen  252 DDGTIHVWNL--------ETGKKVAVLRGPNGGPVSCVRFNPRYAMF-VSAS--SNLVFWL  301 (311)
T ss_pred             CCCcEEEEEc--------CCCcEeeEecCCCCCCccccccCCceeee-eecC--ceEEEEe
Confidence            9886655432        22233334555 67889999999998877 6654  5666773

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.1e-22  Score=195.89  Aligned_cols=290  Identities=13%  Similarity=0.163  Sum_probs=215.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++-|+++  ..+|.|.+||+|+.||+|+||.+.+|+|+..++.                   +..+.|++|.|...   
T Consensus       399 Htg~Vr~i--Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------------d~~I~~vaw~P~~~---  454 (733)
T KOG0650|consen  399 HTGLVRSI--SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------------DSEIRSVAWNPLSD---  454 (733)
T ss_pred             cCCeEEEE--EecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------------cceeEEEEecCCCC---
Confidence            35678556  7888999999999999999999999999988752                   33566777766531   


Q ss_pred             cccCCcEEEEEECC--------------------------------CeEEEEEccCC---e-EEEEecCCCCCCEEEEEE
Q 008058           82 RKLGSSLLVLGTGG--------------------------------GDVLALAVSAG---Q-LKWRLSDCHPGGVSAISF  125 (579)
Q Consensus        82 ~~~~~~~l~~~~~~--------------------------------g~i~iwd~~~~---~-~~~~~~~~h~~~V~~l~~  125 (579)
                          ...|+++...                                +.+..|.-...   + -+.. .-.|...|.++.|
T Consensus       455 ----~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~-~I~~~k~i~~vtW  529 (733)
T KOG0650|consen  455 ----LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI-VIKHPKSIRQVTW  529 (733)
T ss_pred             ----ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE-EEecCCccceeee
Confidence                1222222222                                22334443311   1 0111 1247789999999


Q ss_pred             ccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCC
Q 008058          126 ATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGA  201 (579)
Q Consensus       126 ~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~  201 (579)
                      +..|.||++...+   ..|.|+++...+...-|+-..+.|.++.|+|...+|++++ ..|++||+..+..++++......
T Consensus       530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw  609 (733)
T KOG0650|consen  530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW  609 (733)
T ss_pred             ecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee
Confidence            9999999987653   5789999987766666766778899999999999999999 99999999988888888777788


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      |.+++++|.|..|+.++ .|+.+..+|+.-..+    ...++.++...++.++|.     +.-..+++|+.||++.||..
T Consensus       610 iS~msihp~GDnli~gs-~d~k~~WfDldlssk----Pyk~lr~H~~avr~Va~H-----~ryPLfas~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSK----PYKTLRLHEKAVRSVAFH-----KRYPLFASGSDDGTVIVFHG  679 (733)
T ss_pred             eeeeeecCCCCeEEEec-CCCeeEEEEcccCcc----hhHHhhhhhhhhhhhhhc-----cccceeeeecCCCcEEEEee
Confidence            99999999999999887 799999999987643    245667888888888887     77789999999999999953


Q ss_pred             CCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC----cEEEee
Q 008058          282 QNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE----DINLNC  357 (579)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~----v~~~~~  357 (579)
                      .-...+.                   +                           +.+...++.+.+|...    |..+.|
T Consensus       680 ~VY~Dl~-------------------q---------------------------npliVPlK~L~gH~~~~~~gVLd~~w  713 (733)
T KOG0650|consen  680 MVYNDLL-------------------Q---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIW  713 (733)
T ss_pred             eeehhhh-------------------c---------------------------CCceEeeeeccCceeecccceEeecc
Confidence            1111000                   0                           0111223355566544    889999


Q ss_pred             cCCcceeeccccceecccce
Q 008058          358 SQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       358 s~dg~~l~~s~s~d~~~~~w  377 (579)
                      .|...+| +|++.|++|++|
T Consensus       714 HP~qpWL-fsAGAd~tirlf  732 (733)
T KOG0650|consen  714 HPRQPWL-FSAGADGTIRLF  732 (733)
T ss_pred             cCCCceE-EecCCCceEEee
Confidence            9999999 999999999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=194.87  Aligned_cols=328  Identities=15%  Similarity=0.201  Sum_probs=226.6

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           15 PALDYFAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      |=|.+++++..++.+.||+..+++..    ..+.....                + .++.+.--+.  .      -+.++
T Consensus       122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~----------------~-~Ital~HP~T--Y------LNKIv  176 (910)
T KOG1539|consen  122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG----------------D-FITALLHPST--Y------LNKIV  176 (910)
T ss_pred             eecceEEEEEccCcEEEEEeccccccccccceeeeccC----------------C-ceeeEecchh--h------eeeEE
Confidence            34778888888899999988764111    01110000                0 0222211110  0      34589


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+..|.+.+|++++++.+.++ .++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+|+...++|++++|.-|
T Consensus       177 vGs~~G~lql~Nvrt~K~v~~f-~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD  255 (910)
T KOG1539|consen  177 VGSSQGRLQLWNVRTGKVVYTF-QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD  255 (910)
T ss_pred             EeecCCcEEEEEeccCcEEEEe-cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence            9999999999999999999888 578899999999998889999999999999999999999999966689999999999


Q ss_pred             CCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------------
Q 008058          171 GKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------------  234 (579)
Q Consensus       171 g~~l~~~~---g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------------  234 (579)
                      |+.+.+.+   |.+.+||++..+.+.... .|.+.|....|.|....+++++ .|+.+++|=.+++..            
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~LR~R~GHs  334 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRLLRSRGGHS  334 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchheeeccCCC
Confidence            98655544   899999999988876665 8989999999999999988887 799888885542110            


Q ss_pred             ccceeE----------------------------------------------------------Eee-------------
Q 008058          235 QSASCV----------------------------------------------------------LAM-------------  243 (579)
Q Consensus       235 ~~~~~~----------------------------------------------------------~~~-------------  243 (579)
                      ....|+                                                          ..+             
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence            000000                                                          000             


Q ss_pred             -------------------------ec-----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC--
Q 008058          244 -------------------------EH-----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--  291 (579)
Q Consensus       244 -------------------------~~-----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  291 (579)
                                               .+     ......+++.+     +-|++.+.|...|.|.+||+++|-....+-  
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-----~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~  489 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-----FCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS  489 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-----ccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence                                     00     00122233333     668999999999999999999997766552  


Q ss_pred             -CceEEeeecccCcccccccchhhhhccccceecCCceEEEE---------------------------------EeCCC
Q 008058          292 -ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV---------------------------------AYGLL  337 (579)
Q Consensus       292 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------~~g~~  337 (579)
                       .+...+.... ...-.+    .+++++.+|+...|+-.-..                                 .+...
T Consensus       490 ~ah~~~V~gla-~D~~n~----~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~  564 (910)
T KOG1539|consen  490 PAHKGEVTGLA-VDGTNR----LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV  564 (910)
T ss_pred             ccccCceeEEE-ecCCCc----eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence             2222222111 011122    56677777765544321111                                 01111


Q ss_pred             CCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          338 LKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .....+.+.||.+.++.++|||||++| ++++.|++|++||+-
T Consensus       565 t~kvvR~f~gh~nritd~~FS~DgrWl-isasmD~tIr~wDlp  606 (910)
T KOG1539|consen  565 TRKVVREFWGHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLP  606 (910)
T ss_pred             hhhhhHHhhccccceeeeEeCCCCcEE-EEeecCCcEEEEecc
Confidence            122344566899999999999999999 999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=2.4e-21  Score=171.51  Aligned_cols=213  Identities=14%  Similarity=0.222  Sum_probs=163.6

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEE--Ee-ccccccccccccccccccccccCccceEEeeeccc
Q 008058            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQT--EF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .+.|+.+  ...+ .|+|+++|+.||.|.|||+++.....  -+ -.+.    +. ...+-+.+| ...++.+.|.|.+ 
T Consensus        43 gGsvNsL--~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~----c~-v~~~h~~~H-ky~iss~~WyP~D-  113 (397)
T KOG4283|consen   43 GGSVNSL--QIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK----CI-VAKQHENGH-KYAISSAIWYPID-  113 (397)
T ss_pred             CCcccee--eeccccceEEeecCCCccEEEEEeccccchhhccceehee----ee-ccccCCccc-eeeeeeeEEeeec-
Confidence            4677667  6666 58999999999999999997653110  00 0000    00 011112244 4567889999987 


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                             ...+.+++-|..+++||..+-+....+.  -.+.|++-+++|-   .-++++|..|-.|++.|+.+|..-+++
T Consensus       114 -------tGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L  184 (397)
T KOG4283|consen  114 -------TGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL  184 (397)
T ss_pred             -------CceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence                   7789999999999999999988766663  4578999999983   335778888899999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCC-eeeEE--------------eecCCCCEEEEEEecCCCEEEEE
Q 008058          156 RASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDH-KKMQK--------------FSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~-~~~--g~i~vwd~~~~-~~~~~--------------~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      .+|.+.|.++.|+|...+++ +|+  |.|++||++.. .+...              -..|.+.|.+++|+.++.+++++
T Consensus       185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~  264 (397)
T KOG4283|consen  185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC  264 (397)
T ss_pred             ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence            99999999999999887655 555  99999999753 22222              24677889999999999999999


Q ss_pred             ecCCCeEEEEEcCCCcc
Q 008058          218 AVGERYIALWRTDGVKK  234 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~  234 (579)
                      + .|..+++|+..++..
T Consensus       265 g-td~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  265 G-TDDRIRVWNMESGRN  280 (397)
T ss_pred             c-CccceEEeecccCcc
Confidence            8 688999999988764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=3.5e-22  Score=187.18  Aligned_cols=236  Identities=15%  Similarity=0.210  Sum_probs=189.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|  ++++.||||+|||+|+.|..|.||+.++.+.++.+++|...+.++.|...                         
T Consensus       203 kei--l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g-------------------------  255 (479)
T KOG0299|consen  203 KEI--LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG-------------------------  255 (479)
T ss_pred             cee--EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC-------------------------
Confidence            446  88899999999999999999999999999999999999998888887755                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                        .+.+++++.|+.|++|++.....+.++ .+|.+.|.++....-++.+-.|+.|+++++|++.. .....|.++.+.+-
T Consensus       256 --t~~lys~s~Drsvkvw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sid  331 (479)
T KOG0299|consen  256 --TSELYSASADRSVKVWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSID  331 (479)
T ss_pred             --ccceeeeecCCceEEEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCee
Confidence              677999999999999999988777555 58999999999888888777788999999999943 33446788888999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cC-----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GH-----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h-----------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      |++|-. ...+++|+  |.|.+|++...+++.+.. .|           +..|++++..|....+++++ ++|.|++|.+
T Consensus       332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS-~~G~vrLW~i  409 (479)
T KOG0299|consen  332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS-WSGCVRLWKI  409 (479)
T ss_pred             eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC-CCCceEEEEe
Confidence            999985 45677777  999999999988877653 12           23789999999998888876 8999999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEE
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIW  279 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iw  279 (579)
                      ..+-.. ...+..+. -..+++.++|+     ++|++|++| +....+--|
T Consensus       410 ~~g~r~-i~~l~~ls-~~GfVNsl~f~-----~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  410 EDGLRA-INLLYSLS-LVGFVNSLAFS-----NSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             cCCccc-cceeeecc-cccEEEEEEEc-----cCCCEEEEeccccccccee
Confidence            887322 12334443 45567777877     899977776 344444444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=8.1e-23  Score=192.87  Aligned_cols=272  Identities=14%  Similarity=0.192  Sum_probs=207.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+..|...+++.||+ .|.|+|||+....       ...++..+-.      ...+.-+..+.-.+.         ++.
T Consensus       423 cAvtIS~~trhVyTgG-kgcVKVWdis~pg-------~k~PvsqLdc------l~rdnyiRSckL~pd---------grt  479 (705)
T KOG0639|consen  423 CAVTISNPTRHVYTGG-KGCVKVWDISQPG-------NKSPVSQLDC------LNRDNYIRSCKLLPD---------GRT  479 (705)
T ss_pred             EEEEecCCcceeEecC-CCeEEEeeccCCC-------CCCccccccc------cCcccceeeeEecCC---------Cce
Confidence            3447888889999998 5899999986431       1111111100      001111222222222         788


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |++|+.-.++.|||+......... +....-.+++++.+||.+..++|..||.|.|||+.+...++.|++|.+.+.||.+
T Consensus       480 LivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi  559 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  559 (705)
T ss_pred             EEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence            999999999999999876542111 1222245788999999999999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      ++||..|.+|+  ++|+-||+++++.+.... ..+.|.++.++|++.+++.+- .++.+.+-.....++      +.+..
T Consensus       560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGM-ens~vevlh~skp~k------yqlhl  631 (705)
T KOG0639|consen  560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKPEK------YQLHL  631 (705)
T ss_pred             cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeec-ccCcEEEEecCCccc------eeecc
Confidence            99999999999  999999999987665432 567899999999999999875 788887777666542      34555


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccce
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      +...+-.+.|.     +-|+++++.+.|+-+..|...-|..+...+......+|..  +.+.+    +|++|+.+..
T Consensus       632 heScVLSlKFa-----~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDI--S~ddk----yIVTGSGdkk  697 (705)
T KOG0639|consen  632 HESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDI--SFDDK----YIVTGSGDKK  697 (705)
T ss_pred             cccEEEEEEec-----ccCceeeecCchhhhhhccCccccceeeccccCcceeeee--ccCce----EEEecCCCcc
Confidence            66667777787     8999999999999999999999988888777777777766  55656    8999998753

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.7e-21  Score=184.30  Aligned_cols=312  Identities=14%  Similarity=0.134  Sum_probs=226.8

Q ss_pred             eEEEEcc--CCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            9 ILTSFSP--ALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 ~~~~fs~--dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      -|++||+  .|.+++...  .+..+.|||+..+......+..+..+                  ....|+|.+       
T Consensus       158 ~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v------------------~~a~FHPtd-------  212 (626)
T KOG2106|consen  158 TCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV------------------FLATFHPTD-------  212 (626)
T ss_pred             eeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE------------------EEEEeccCC-------
Confidence            4569998  356666654  46779999999887766555433333                  345555554       


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                        ..+++....|.+..|+++.+....+.   .+....-|.|++|.++|. +++|.++|.|.||+..+.+..+...+|.+.
T Consensus       213 --~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg  289 (626)
T KOG2106|consen  213 --PNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGG  289 (626)
T ss_pred             --CcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCc
Confidence              34777778899999999988765432   222236799999999986 789999999999999888877777799999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCe-----------ee-----------------------------EEeecCC
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK-----------KM-----------------------------QKFSGHP  199 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-----------~~-----------------------------~~~~~h~  199 (579)
                      |.+++...+|.++- |+  ..|..||-.-.+           .+                             ....+|.
T Consensus       290 v~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~  368 (626)
T KOG2106|consen  290 VFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHG  368 (626)
T ss_pred             eEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecc
Confidence            99999999998777 66  789999832100           00                             0224677


Q ss_pred             CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058          200 GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       200 ~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw  279 (579)
                      .....++.+|+...+++++ .|+.+++|+  ..+     ..++.. -.....++.|.     |.| .++.|+..|...+.
T Consensus       369 delwgla~hps~~q~~T~g-qdk~v~lW~--~~k-----~~wt~~-~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~  433 (626)
T KOG2106|consen  369 DELWGLATHPSKNQLLTCG-QDKHVRLWN--DHK-----LEWTKI-IEDPAECADFH-----PSG-VVAVGTATGRWFVL  433 (626)
T ss_pred             cceeeEEcCCChhheeecc-CcceEEEcc--CCc-----eeEEEE-ecCceeEeecc-----Ccc-eEEEeeccceEEEE
Confidence            7888899999999999998 799999999  222     222222 22334567776     888 99999999999999


Q ss_pred             ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                      |.++...+..+.. ..++.... +++++.    +++.|+.|+.+|++.    +..+...+....+..+  .+++.+.||+
T Consensus       434 d~e~~~lv~~~~d-~~~ls~v~-ysp~G~----~lAvgs~d~~iyiy~----Vs~~g~~y~r~~k~~g--s~ithLDwS~  501 (626)
T KOG2106|consen  434 DTETQDLVTIHTD-NEQLSVVR-YSPDGA----FLAVGSHDNHIYIYR----VSANGRKYSRVGKCSG--SPITHLDWSS  501 (626)
T ss_pred             ecccceeEEEEec-CCceEEEE-EcCCCC----EEEEecCCCeEEEEE----ECCCCcEEEEeeeecC--ceeEEeeecC
Confidence            9999766655444 33344333 788888    999999998877642    1111112222334444  7899999999


Q ss_pred             Ccceeeccccceecccce
Q 008058          360 DGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       360 dg~~l~~s~s~d~~~~~w  377 (579)
                      |++++ .+-|-|--+..|
T Consensus       502 Ds~~~-~~~S~d~eiLyW  518 (626)
T KOG2106|consen  502 DSQFL-VSNSGDYEILYW  518 (626)
T ss_pred             CCceE-EeccCceEEEEE
Confidence            99999 999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.90  E-value=1.1e-22  Score=180.99  Aligned_cols=241  Identities=16%  Similarity=0.290  Sum_probs=192.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+++  .|+|....|++|+.|++|++||...-.....++....                ...+.++.++|.       
T Consensus       173 devn~l--~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd----------------~~~vrsiSfHPs-------  227 (430)
T KOG0640|consen  173 DEVNDL--DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD----------------TEPVRSISFHPS-------  227 (430)
T ss_pred             Ccccce--eecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc----------------cceeeeEeecCC-------
Confidence            467556  9999999999999999999999875443333332111                223445555554       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~  160 (579)
                        |.++++|+.-..+++||+.+-++....  ..+|++.|+++.+++.|+..++++.||.|++||-.+++++.++. +|.+
T Consensus       228 --GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g  305 (430)
T KOG0640|consen  228 --GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG  305 (430)
T ss_pred             --CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence              899999999999999999999886433  35799999999999999999999999999999999999999875 4555


Q ss_pred             -CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          161 -GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                       .|.+..|..+|+++++.+  ..+++|.+.+++++..+.|-.     .--+...|+....|++.--...+.+.-||.++.
T Consensus       306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence             899999999999999998  799999999999999887542     123456788888888876555678999999998


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ...   ..+.+.|.+ .+.+...+     |.+.-+++++.|-.+++|-
T Consensus       386 dr~---~l~slgHn~-a~R~i~HS-----P~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  386 DRV---ALLSLGHNG-AVRWIVHS-----PVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             hhh---hhcccCCCC-CceEEEeC-----CCCCceeeecccceeeeee
Confidence            754   445565655 45556666     8999999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=9.4e-21  Score=185.53  Aligned_cols=268  Identities=17%  Similarity=0.148  Sum_probs=188.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEECC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGG   95 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~   95 (579)
                      ++.+++++.|+.|++||..+++....+..+.. +                  ..+.|.+.         +..+ +++..+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~------------------~~l~~~~d---------g~~l~~~~~~~   52 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-P------------------RGITLSKD---------GKLLYVCASDS   52 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-C------------------CceEECCC---------CCEEEEEECCC
Confidence            35788999999999999999988877763321 1                  23444432         4544 566778


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      +.|++||..+++....+.. + ..+..++|+|+++.++++ +.|+.+++||+.+++.+..+.. ...+.+++|+|+|+++
T Consensus        53 ~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l  129 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPS-G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV  129 (300)
T ss_pred             CeEEEEECCCCcEEEeccC-C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence            9999999999988765532 3 335788999999987655 5689999999998887777763 3356889999999999


Q ss_pred             EEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-----
Q 008058          175 ATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-----  246 (579)
Q Consensus       175 ~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-----  246 (579)
                      +++.   ..+.+||..+++....+.. ...+..+.|+|+++++++++..++.|++||+.+++...   .......     
T Consensus       130 ~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~---~~~~~~~~~~~~  205 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK---KITFEIPGVHPE  205 (300)
T ss_pred             EEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee---eeeecccccccc
Confidence            9887   3578889988877665543 33457899999999887665468999999999876431   1111110     


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      ......+.++     |++++++++ +.++.+.+||.++++.+...                                   
T Consensus       206 ~~~~~~i~~s-----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-----------------------------------  245 (300)
T TIGR03866       206 AVQPVGIKLT-----KDGKTAFVALGPANRVAVVDAKTYEVLDYL-----------------------------------  245 (300)
T ss_pred             cCCccceEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence            0111234455     899886554 45778999998665432110                                   


Q ss_pred             CceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          326 ASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       326 ~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                           .+...+.+++|+|||.+|.++++.++.+++|++.
T Consensus       246 ---------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       246 ---------------------LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             ---------------------EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence                                 0111466889999999983334668999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=1.3e-22  Score=191.45  Aligned_cols=230  Identities=16%  Similarity=0.257  Sum_probs=183.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +|...|||+.|++|+.-.++.|||+..-..  ..++.........+..+++                           .+
T Consensus       470 SckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD---------------------------ak  522 (705)
T KOG0639|consen  470 SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD---------------------------AK  522 (705)
T ss_pred             eeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc---------------------------cc
Confidence            458899999999999999999999975543  2223222122222222332                           77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      +.++|+.||.|.|||+.....+.++ +||++.+.|+.+++||..|.+|+.|.+||.||+++++.+.... ....|.++..
T Consensus       523 vcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~  600 (705)
T KOG0639|consen  523 VCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGY  600 (705)
T ss_pred             eeeeeccCCcEEEEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheeccc
Confidence            8899999999999999998888666 7999999999999999999999999999999999998776644 3568999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +|++.++++|-  +.+.|...... ....+.-|.+-|.++.|.+-|+++++.| .|+.+..|...-+..     ++....
T Consensus       601 cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrtPyGas-----iFqskE  673 (705)
T KOG0639|consen  601 CPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGAS-----IFQSKE  673 (705)
T ss_pred             CCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC-chhhhhhccCccccc-----eeeccc
Confidence            99999999998  67777765433 3456677999999999999999999998 799999999888763     355555


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      ...++.|- ++     .|.++|++|+.|....||.+
T Consensus       674 ~SsVlsCD-IS-----~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  674 SSSVLSCD-IS-----FDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cCcceeee-ec-----cCceEEEecCCCcceEEEEE
Confidence            55555444 43     68899999999999998864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=7e-22  Score=193.82  Aligned_cols=222  Identities=16%  Similarity=0.265  Sum_probs=183.9

Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +|-+ ++-.+++|+.|++|.+|...+......+++|...+.++....+                           +. ++
T Consensus        65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~---------------------------~~-~i  116 (745)
T KOG0301|consen   65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED---------------------------GT-LI  116 (745)
T ss_pred             eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc---------------------------Cc-eE
Confidence            5554 4456999999999999999999999999988876665433322                           33 89


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+.|.++++|-...  +... ..+|+..|+++.+-|++ .++||+.|.+|++|.-  ++.+++|.+|.+-|..+++-|+
T Consensus       117 SgSWD~TakvW~~~~--l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  117 SGSWDSTAKVWRIGE--LVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             ecccccceEEecchh--hhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence            999999999997653  3323 47999999999999988 7899999999999984  8899999999999999999988


Q ss_pred             CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058          171 GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       171 g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      +.++-++. |.|++|++ +|+++..+.+|...|.++...+++..++++| +|+++++|+..       +|...+.++...
T Consensus       191 ~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~-------e~~q~I~lPtts  261 (745)
T KOG0301|consen  191 SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKD-------ECVQVITLPTTS  261 (745)
T ss_pred             CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecC-------ceEEEEecCccc
Confidence            76665555 99999999 8889999999999999999878888899998 89999999976       266778888855


Q ss_pred             eEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      +.++.+-     ++|. |++|+.||.|+||...
T Consensus       262 iWsa~~L-----~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  262 IWSAKVL-----LNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eEEEEEe-----eCCC-EEEeccCceEEEEEec
Confidence            5555443     5655 7889999999999865

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.4e-21  Score=172.95  Aligned_cols=259  Identities=19%  Similarity=0.221  Sum_probs=187.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -.+.|+|.++.|+.++.||.+++||+........++ |..++.                  ++++.+          ...
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL------------------~c~F~d----------~~~   67 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLL------------------DCAFAD----------EST   67 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCcee------------------eeeccC----------Cce
Confidence            455999999999999999999999998776555554 333333                  333332          345


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++|+.||.|+.+|+.++...  ....|..+|.|+.+++....+++|+.|++|++||.+....+.++.. ...|.|+...
T Consensus        68 ~~~G~~dg~vr~~Dln~~~~~--~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~  144 (323)
T KOG1036|consen   68 IVTGGLDGQVRRYDLNTGNED--QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS  144 (323)
T ss_pred             EEEeccCceEEEEEecCCcce--eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc
Confidence            899999999999999998874  2357999999999999888999999999999999987656656553 3488888876


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-c----cee
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-S----ASC  239 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~----~~~  239 (579)
                        |+.|++|.  ..+.+||+++.....+.  ..-+-.++++++-|++.-++.++ -||.|.+=.++..... +    .+|
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS-ieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS-IEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe-ecceEEEEccCCchHHhhhceeEEe
Confidence              55666655  79999999986543222  23345689999999877677776 6999888777665211 1    112


Q ss_pred             EEeee---cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058          240 VLAME---HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       240 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      .....   .....+..+.|+     |-...+++|+.||.|.+||+.+.+.+..+.+-...+.+.. |+.++.
T Consensus       222 Hr~~~~~~~~~yPVNai~Fh-----p~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls-fs~dG~  287 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFH-----PIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS-FSMDGS  287 (323)
T ss_pred             eecccCCceEEEEeceeEec-----cccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE-eccCCC
Confidence            22111   113456667776     8788999999999999999999988877665533333322 444444

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.4e-23  Score=202.55  Aligned_cols=237  Identities=15%  Similarity=0.226  Sum_probs=186.5

Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCC---CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           12 SFSP-ALDYFAICSGDARIKIWDTLK---GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fs~-dg~~las~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .|+. +.++||+++..|.|.+||+..   .+.+..|..|.-                  .+.++.|++..        ..
T Consensus        94 kW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R------------------s~~~ldfh~te--------p~  147 (839)
T KOG0269|consen   94 KWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER------------------SANKLDFHSTE--------PN  147 (839)
T ss_pred             ccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc------------------ceeeeeeccCC--------cc
Confidence            5654 467999999999999999976   444455655543                  44566666665        77


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l  165 (579)
                      +|++|+.||.|++||++..+....+ .+....|+++.|+| .+..|+++...|.+++||++.. ++...+.+|.++|.|+
T Consensus       148 iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  148 ILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             EEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence            8999999999999999998877565 45788999999999 5677999999999999999865 5677899999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEE-EEEec-CCCeEEEEEcCCCcccccee
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV-LSSAV-GERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l-~s~s~-~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .|+|++.+||+|+  +.|+|||+.+.+.  +.++. ...+|..++|-|..++. ++++. .|-.|+|||++..-..    
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP----  301 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP----  301 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc----
Confidence            9999999999999  8999999987654  33333 45789999999987754 44432 4778999999886533    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ..++..+...++.++|..    .|...+.+++.||++..-.+++.
T Consensus       302 ~~t~~eH~~~vt~i~W~~----~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDS----GDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeeccCccccceeccC----CCceeeEeecCccHHHHhhhhcc
Confidence            345666777778888862    45678999999998876554443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=1.2e-21  Score=183.60  Aligned_cols=246  Identities=12%  Similarity=0.122  Sum_probs=185.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEE---------ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc-----
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWR---------LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS-----  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~---------~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~-----  150 (579)
                      ..++++.+.++.|+|||..+..-...         .+.+|...=++++|++.. .++++++.|++|++||+....     
T Consensus       137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~  216 (422)
T KOG0264|consen  137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV  216 (422)
T ss_pred             CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence            67888899999999999875432111         236788878899999854 459999999999999997442     


Q ss_pred             --eeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECC--CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          151 --LLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCS--DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       151 --~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                        ....+.+|...|..++|+|- ..++++++  +.+.|||++  +.++.....+|.++|++++|+|-+.+++++++.|++
T Consensus       217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t  296 (422)
T KOG0264|consen  217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT  296 (422)
T ss_pred             ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence              34568899999999999994 45666666  899999999  556677788999999999999977666665557999


Q ss_pred             EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccC
Q 008058          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVN  303 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  303 (579)
                      |.+||+++.+.    +..++..+...+..+.|++    .....||+++.|+.+.+||+..-...+..             
T Consensus       297 V~LwDlRnL~~----~lh~~e~H~dev~~V~WSP----h~etvLASSg~D~rl~vWDls~ig~eq~~-------------  355 (422)
T KOG0264|consen  297 VALWDLRNLNK----PLHTFEGHEDEVFQVEWSP----HNETVLASSGTDRRLNVWDLSRIGEEQSP-------------  355 (422)
T ss_pred             EEEeechhccc----CceeccCCCcceEEEEeCC----CCCceeEecccCCcEEEEeccccccccCh-------------
Confidence            99999998764    3566777777777888872    34567888899999999997532221110             


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                       .+..           +|     .           -..+-.-.||...|..+.|.|.-.+..+|.+.|+.+.+|...
T Consensus       356 -eda~-----------dg-----p-----------pEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  356 -EDAE-----------DG-----P-----------PELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -hhhc-----------cC-----C-----------cceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence             0000           01     0           011113348999999999999999877999999999999874

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=8.6e-23  Score=185.55  Aligned_cols=269  Identities=10%  Similarity=0.032  Sum_probs=202.7

Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      |++=+|.. ..+|+|+.||.|+|||+.+..+...|+.|.+.+..+.+.                             ...
T Consensus        71 ~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~-----------------------------~~~  121 (433)
T KOG0268|consen   71 CLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVT-----------------------------QTS  121 (433)
T ss_pred             hhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEec-----------------------------ccc
Confidence            33667766 679999999999999999999999999998877766554                             234


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++++.|.+|+.|.+... ....+.  -.+.+.++.-+..+..++|||.+  |.|||.....+++.+.-....|.++.|+
T Consensus       122 ~~tvgdDKtvK~wk~~~~-p~~til--g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  122 FFTVGDDKTVKQWKIDGP-PLHTIL--GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             eEEecCCcceeeeeccCC-cceeee--ccccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecC
Confidence            789999999999998764 333332  23567788877778889998765  8999999889999988777899999999


Q ss_pred             cCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058          169 SDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       169 p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      |... +|+++.  +.|.+||++++.+++++. -.-.-+.|+|+|.+-.|++ +++|..++.||++.....    +.....
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~-a~ED~nlY~~DmR~l~~p----~~v~~d  270 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVA-ANEDHNLYTYDMRNLSRP----LNVHKD  270 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceee-ccccccceehhhhhhccc----chhhcc
Confidence            9665 455553  899999999999887765 2334578999996544544 558999999999886533    233345


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecC
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP  325 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  325 (579)
                      +...+-.+.|+     |.|+-+++|+.|.+|+||....+..-......+.+-.....++.+.+    +|++|+.|+.+++
T Consensus       271 hvsAV~dVdfs-----ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk----yi~SGSdd~nvRl  341 (433)
T KOG0268|consen  271 HVSAVMDVDFS-----PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK----YIISGSDDGNVRL  341 (433)
T ss_pred             cceeEEEeccC-----CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc----EEEecCCCcceee
Confidence            55556667777     99999999999999999998877543222222222121122677777    9999999987777


Q ss_pred             Cc
Q 008058          326 AS  327 (579)
Q Consensus       326 ~~  327 (579)
                      |.
T Consensus       342 Wk  343 (433)
T KOG0268|consen  342 WK  343 (433)
T ss_pred             ee
Confidence            54

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.3e-23  Score=204.87  Aligned_cols=231  Identities=15%  Similarity=0.247  Sum_probs=198.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++.|.++  ..-..++.+++|+.|..+.+|.+..-..+..+.+|..++.++.|..+                        
T Consensus        28 saav~~l--k~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~------------------------   81 (825)
T KOG0267|consen   28 SAAVGCL--KIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS------------------------   81 (825)
T ss_pred             hhhhcee--eeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc------------------------
Confidence            3444334  33456788999999999999999888888889999998888888776                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         ..+|+.|+.+|.|++||+..++.+..+ .+|...+..+.|+|-+.++++|+.|+.+++||.+...+.+.+++|...+
T Consensus        82 ---E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv  157 (825)
T KOG0267|consen   82 ---ERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV  157 (825)
T ss_pred             ---hhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCccee
Confidence               788999999999999999999988655 6899999999999999999999999999999999888999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .++.|+|+|++++.|+  ..++|||...|+.+..|.+|.+.+..+.|+|..-.++.+| .|+++++||+++-+.+     
T Consensus       158 ~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs-~d~tv~f~dletfe~I-----  231 (825)
T KOG0267|consen  158 DVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS-SDRTVRFWDLETFEVI-----  231 (825)
T ss_pred             EEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC-CCceeeeeccceeEEe-----
Confidence            9999999999999998  8999999999999999999999999999999886666666 7999999999976533     


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                      -........+.+..|+     |++..+++|..+.
T Consensus       232 ~s~~~~~~~v~~~~fn-----~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  232 SSGKPETDGVRSLAFN-----PDGKIVLSGEQIS  260 (825)
T ss_pred             eccCCccCCceeeeec-----CCceeeecCchhh
Confidence            2333335556778887     8999888887654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1.6e-21  Score=189.46  Aligned_cols=291  Identities=18%  Similarity=0.212  Sum_probs=200.6

Q ss_pred             ccceEEEEccCC---CEEEEEeCCCcEEEEECCCCeEE------EEeccccccccccccccccccccccCccceEEeeec
Q 008058            6 IRDILTSFSPAL---DYFAICSGDARIKIWDTLKGQVQ------TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         6 V~~~~~~fs~dg---~~las~s~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +..+.+.|++..   ..||.+..||.|.++|.......      ..+..|.                  ..+..+.|.+.
T Consensus        50 ~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~------------------nAifDl~wapg  111 (720)
T KOG0321|consen   50 VPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHK------------------NAIFDLKWAPG  111 (720)
T ss_pred             CCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccccccc------------------ceeEeeccCCC
Confidence            334556777633   47888999999999998654322      2222222                  23445667663


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCc----
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGS----  150 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~----  150 (579)
                               ...|+++++|.++++||+.+++++.. +..||.+.|.+++|.|.+. .|++|+.||.|.+||++-..    
T Consensus       112 ---------e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~  182 (720)
T KOG0321|consen  112 ---------ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL  182 (720)
T ss_pred             ---------ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH
Confidence                     67799999999999999999988644 3468999999999999655 58899999999999986321    


Q ss_pred             -----------------------eeeEeecCCCCeeE---EEEccCCCEEEEEC---CeEEEEECCCCeeeE--------
Q 008058          151 -----------------------LLGKFRASTKGISC---MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--------  193 (579)
Q Consensus       151 -----------------------~~~~~~~~~~~v~~---l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~--------  193 (579)
                                             .+...+++...|.+   +.+..|...||+++   +.|+|||++......        
T Consensus       183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~  262 (720)
T KOG0321|consen  183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD  262 (720)
T ss_pred             HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc
Confidence                                   12223344555555   55667889999987   799999998754322        


Q ss_pred             EeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058          194 KFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       194 ~~~~h---~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      .+.-|   .-.+.++.....|.+|++.+ .|+.|++|++......   .+..+.+.   ....++...+.+|++.++++|
T Consensus       263 ~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s~s---P~~~~sg~---~~~sf~vks~lSpd~~~l~Sg  335 (720)
T KOG0321|consen  263 KYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLSIS---PVAEFSGK---LNSSFYVKSELSPDDCSLLSG  335 (720)
T ss_pred             CccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccCcC---chhhccCc---ccceeeeeeecCCCCceEecc
Confidence            22233   23466677777789998887 5999999999886543   22222221   111222222334999999999


Q ss_pred             EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008058          271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG  350 (579)
Q Consensus       271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~  350 (579)
                      +.|...++|.+.+.+.-                 +       .                              -+.||..
T Consensus       336 Ssd~~ayiw~vs~~e~~-----------------~-------~------------------------------~l~Ght~  361 (720)
T KOG0321|consen  336 SSDEQAYIWVVSSPEAP-----------------P-------A------------------------------LLLGHTR  361 (720)
T ss_pred             CCCcceeeeeecCccCC-----------------h-------h------------------------------hhhCcce
Confidence            99999999986544320                 0       0                              2347888


Q ss_pred             CcEEEeecCCcceeeccccceecccceeeeecee
Q 008058          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQNRVT  384 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~~~  384 (579)
                      +|++++|.|....=.+++|+|..+++|++.+.+.
T Consensus       362 eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  362 EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             EEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence            8999999875543227889999999999854443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=7.6e-21  Score=186.55  Aligned_cols=341  Identities=13%  Similarity=0.104  Sum_probs=227.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      .++.|+|.+..|++++.|.++.||...+.  --+....-.             .-++.+...-...|++.         +
T Consensus       271 ~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG-------------e~gg~a~GF~g~lw~~n---------~  328 (764)
T KOG1063|consen  271 YSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG-------------EVGGSAGGFWGGLWSPN---------S  328 (764)
T ss_pred             EEEEEccchhhheecccCcceEEEecCCccceEEEEEEee-------------cccccccceeeEEEcCC---------C
Confidence            45599999999999999999999987654  222222210             01122223444566654         6


Q ss_pred             cEEEEEECCCeEEEEEccCC-eE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------
Q 008058           87 SLLVLGTGGGDVLALAVSAG-QL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG---------------  149 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~-~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~---------------  149 (579)
                      +.++.-+..|..++|..... .. ......||.+.|++++|+|.|.++++.+.|.+-|+|-.-..               
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy  408 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY  408 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence            77888889999999993332 11 22344799999999999999999999999988887643200               


Q ss_pred             --------------------ceeeEee-----------------------------------------------------
Q 008058          150 --------------------SLLGKFR-----------------------------------------------------  156 (579)
Q Consensus       150 --------------------~~~~~~~-----------------------------------------------------  156 (579)
                                          +.++.|+                                                     
T Consensus       409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence                                0011111                                                     


Q ss_pred             ----------------------------------cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEe
Q 008058          157 ----------------------------------ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       157 ----------------------------------~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~  195 (579)
                                                        +|...|++++.+|+|+++|+++       ..|++|+..+...+..+
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L  568 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL  568 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee
Confidence                                              6788999999999999999987       37999999998888899


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       196 ~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                      .+|.-.|+.++|+|||++|++.+ .|+++.+|........... ......|..++-.+.|+     |++++++++|.|.+
T Consensus       569 ~~HsLTVT~l~FSpdg~~LLsvs-RDRt~sl~~~~~~~~~e~~-fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~  641 (764)
T KOG1063|consen  569 EGHSLTVTRLAFSPDGRYLLSVS-RDRTVSLYEVQEDIKDEFR-FACLKAHTRIIWDCSWS-----PDEKYFATASRDKK  641 (764)
T ss_pred             cccceEEEEEEECCCCcEEEEee-cCceEEeeeeecccchhhh-hccccccceEEEEcccC-----cccceeEEecCCce
Confidence            99999999999999999999998 7999999998654432111 11244566667667776     99999999999999


Q ss_pred             EEEEECCCc--eeecccC--CceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCC----CceeEEEec
Q 008058          276 CYIWYGQNI--EELRNTK--ATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL----KPSFQKILV  347 (579)
Q Consensus       276 i~iwd~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~  347 (579)
                      |++|.....  +.+....  +....++..+....+.......++.|-..|.+.++.-...-..+...    ........+
T Consensus       642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~  721 (764)
T KOG1063|consen  642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIG  721 (764)
T ss_pred             EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccC
Confidence            999998777  3333211  11122222221122222222244555555544433211000000000    011223346


Q ss_pred             CCCCcEEEeecCC----------cceeeccccceecccceee
Q 008058          348 NSGEDINLNCSQD----------GVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       348 h~~~v~~~~~s~d----------g~~l~~s~s~d~~~~~w~~  379 (579)
                      |...|..++|+|.          ...| ++|+.|.++++.++
T Consensus       722 ~~~aV~rl~w~p~~~~~~~~~~~~l~l-a~~g~D~~vri~nv  762 (764)
T KOG1063|consen  722 PDSAVNRLLWRPTCSDDWVEDKEWLNL-AVGGDDESVRIFNV  762 (764)
T ss_pred             hHHhhheeEeccccccccccccceeEE-eeecccceeEEeec
Confidence            8888999999975          2456 88888999988876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=5.7e-21  Score=179.02  Aligned_cols=287  Identities=11%  Similarity=0.129  Sum_probs=213.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|+  ++.|+|....+++++.||+++||.++..  ..++.+.-...++....|.+.                      
T Consensus       213 ~~~I~--sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~----------------------  268 (514)
T KOG2055|consen  213 HGGIT--SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN----------------------  268 (514)
T ss_pred             cCCce--EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC----------------------
Confidence            57784  4599999999999999999999987632  234444333333443333333                      


Q ss_pred             ccccCCc-EEEEEECCCeEEEEEccCCeEEEE-ecCCCC-CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           81 KRKLGSS-LLVLGTGGGDVLALAVSAGQLKWR-LSDCHP-GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~-~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                           +. .+++++...-++.||+.+.+...- ...++. ..+..+..+|++++|+..+..|.|.+....+++.+.+++ 
T Consensus       269 -----G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-  342 (514)
T KOG2055|consen  269 -----GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-  342 (514)
T ss_pred             -----CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence                 44 788888888899999998876421 112333 357788899999999999999999999999999999988 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      -.+.|..++|+.+|+.|++++  |.|++||++...++..+... +.|  ++++.++++.||++|+ +.|.|.|||.++-.
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCF  420 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEecc-CcceEEEeccchhh
Confidence            467899999999999887775  99999999999999888643 333  4677789999999987 79999999965432


Q ss_pred             c-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058          234 K-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      . ....++.++..-...++.+.|+     |+++.||.++.  +..+++-.+.+.......++             .    
T Consensus       421 ~s~~PkPik~~dNLtt~Itsl~Fn-----~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~-------------~----  478 (514)
T KOG2055|consen  421 ASTNPKPIKTVDNLTTAITSLQFN-----HDAQILAIASRVKKNALRLVHVPSCTVFSNFPT-------------S----  478 (514)
T ss_pred             ccCCCCchhhhhhhheeeeeeeeC-----cchhhhhhhhhccccceEEEeccceeeeccCCC-------------C----
Confidence            1 1133556666667778888888     99999988876  55666665443332221110             0    


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                         ...-+.|+|++|||.|-++ +-|..++.+.+|.+
T Consensus       479 -----------------------------------n~~vg~vtc~aFSP~sG~l-AvGNe~grv~l~kL  511 (514)
T KOG2055|consen  479 -----------------------------------NTKVGHVTCMAFSPNSGYL-AVGNEAGRVHLFKL  511 (514)
T ss_pred             -----------------------------------CCcccceEEEEecCCCceE-EeecCCCceeeEee
Confidence                                               0122368999999999999 99999999999987

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=4.4e-21  Score=175.42  Aligned_cols=205  Identities=15%  Similarity=0.245  Sum_probs=150.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      +..+.|+-+..|.|+||++...  +..+......+....+.+-+ ..+|. ...-.++|.|..        ...+++|..
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp~~--------~g~LlsGDc  232 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSPIK--------TGRLLSGDC  232 (440)
T ss_pred             CcceeeeecccCcEEEEEchhh--hhhhcCccccccccccCceEEecccC-ccceeeeccccc--------ccccccCcc
Confidence            4456777778999999997532  11121111111111111111 12444 344468888753        455788888


Q ss_pred             CCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCCeeEEEEc
Q 008058           95 GGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~v~~l~~~  168 (579)
                      .+.|++|.+.+|...  ..-+.+|+..|-+++|+|. ...|++||.||+|+|||++.+   .++. .++|...|+.|.|+
T Consensus       233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWn  311 (440)
T KOG0302|consen  233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWN  311 (440)
T ss_pred             ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEcc
Confidence            899999999998653  2234579999999999995 456999999999999999988   3333 48899999999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCC---CeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCc
Q 008058          169 SDGKMLATAA--GQLKTFNCSD---HKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ..-.+|++|+  |+++|||+++   ++++.+|+-|..+|++|.|+|... .|+++| .|.+|.+||+....
T Consensus       312 r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  312 RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLSVEA  381 (440)
T ss_pred             CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEeeccC
Confidence            9888999998  9999999985   577999999999999999998654 445554 79999999986543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.8e-23  Score=202.12  Aligned_cols=210  Identities=15%  Similarity=0.195  Sum_probs=180.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ...++.|+.+..+.+|.+.....+..+ .+|..+|.++.|+++...|++|+.+|+|++||+.+++.++++.+|...+.++
T Consensus        40 ~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv  118 (825)
T KOG0267|consen   40 SRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSV  118 (825)
T ss_pred             ceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCccee
Confidence            567888888889999999877766554 6899999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      .|+|-+.+.++|+  +.+++||.+...+...+.+|...|..+.|+|+|+++++++ +|.+++|||...++..     ..+
T Consensus       119 ~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~-----~ef  192 (825)
T KOG0267|consen  119 DFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLS-----KEF  192 (825)
T ss_pred             eeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC-Ccceeeeecccccccc-----ccc
Confidence            9999999998888  8999999998889999999999999999999999999998 6999999999988744     344


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      ..+...+..+-|.     |....+++|+.|+++++||+++.+.+...++....+.+.. |.++++
T Consensus       193 ~~~e~~v~sle~h-----p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~-fn~~~~  251 (825)
T KOG0267|consen  193 KSHEGKVQSLEFH-----PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLA-FNPDGK  251 (825)
T ss_pred             ccccccccccccC-----chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeee-ecCCce
Confidence            4444444455565     8888899999999999999999999887777655555544 566655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=1.2e-21  Score=192.27  Aligned_cols=242  Identities=17%  Similarity=0.220  Sum_probs=201.0

Q ss_pred             ccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058            6 IRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ||++  +.||+|++||+|..-|+++||++.+-+....+..|...+.++.|+.+..                        .
T Consensus       462 ~R~~--~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~------------------------~  515 (1080)
T KOG1408|consen  462 FRAL--AVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL------------------------T  515 (1080)
T ss_pred             eEEE--EECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchh------------------------h
Confidence            5555  9999999999999999999999999888888888888888777776510                        1


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec-----C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA-----S  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~  158 (579)
                      ..+|++++.|.-|++||+..+-...+...+|...|+++.|..+|  ..+++++.|+.|.+--.+.......|..     .
T Consensus       516 ~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~  595 (1080)
T KOG1408|consen  516 NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS  595 (1080)
T ss_pred             hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence            56799999999999999988776666668999999999998877  6799999999875433221111111221     2


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ...++.++..|..+++++++  ..|+|||+++++..+.|++   |.+....+...|.|.|+++++ .|+++.++|+.+++
T Consensus       596 ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc-sdktl~~~Df~sgE  674 (1080)
T KOG1408|consen  596 KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC-SDKTLCFVDFVSGE  674 (1080)
T ss_pred             cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee-cCCceEEEEeccch
Confidence            34789999999999999998  8999999999999999964   667788889999999999988 59999999999987


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                           |+..+..+...++.+.|.     +|-++|++.+.||+|.||.+...
T Consensus       675 -----cvA~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  675 -----CVAQMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             -----hhhhhcCcchheeeeeec-----ccchhheeecCCceEEEEECchh
Confidence                 557778888889999998     89999999999999999997643

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.2e-20  Score=167.83  Aligned_cols=271  Identities=14%  Similarity=0.119  Sum_probs=190.0

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd  145 (579)
                      .+.+++|.|..        ..+++.++.||+|++|+++. |..+.+....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus        29 sIS~l~FSP~~--------~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   29 SISALAFSPQA--------DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             chheeEecccc--------CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence            45556666522        67788999999999999987 5666566678999999999999999999999999999999


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCC--EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          146 PLTGSLLGKFRASTKGISCMAVSSDGK--MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~--~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      +.++ .+..+..|.++|.++.|-+...  .|++|+  .+|+.||.+...++.++. -...+.++..-  ...++.+. .+
T Consensus       101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVat-a~  175 (347)
T KOG0647|consen  101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVAT-AE  175 (347)
T ss_pred             ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEe-cC
Confidence            9999 5567788999999999987665  889999  899999999999888876 44566666553  23455555 69


Q ss_pred             CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec--ccCCce-----
Q 008058          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR--NTKATK-----  294 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-----  294 (579)
                      +.|.+|+++.+........-.+   ...+++++.-     ++..-.+.|+-+|.+-|..++.+.+..  .++.++     
T Consensus       176 r~i~vynL~n~~te~k~~~SpL---k~Q~R~va~f-----~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~  247 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPL---KWQTRCVACF-----QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV  247 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcc---cceeeEEEEE-----ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence            9999999987643311111111   2223333332     566666999999999999888763321  111111     


Q ss_pred             ----EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc
Q 008058          295 ----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL  370 (579)
Q Consensus       295 ----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~  370 (579)
                          ..+.+. .|-|-..    .+++++.||....||        ......+.+..-|..+|.+++|+.+|.+++-..|.
T Consensus       248 ~~~VYaVNsi-~FhP~hg----tlvTaGsDGtf~FWD--------kdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  248 NDDVYAVNSI-AFHPVHG----TLVTAGSDGTFSFWD--------KDARTKLKTSETHPQPITCCSFNRNGSIFAYALGY  314 (347)
T ss_pred             CCceEEecce-Eeecccc----eEEEecCCceEEEec--------chhhhhhhccCcCCCccceeEecCCCCEEEEEeec
Confidence                111111 2444322    677888877544433        33333344556688999999999999998444454


Q ss_pred             e
Q 008058          371 L  371 (579)
Q Consensus       371 d  371 (579)
                      |
T Consensus       315 D  315 (347)
T KOG0647|consen  315 D  315 (347)
T ss_pred             c
Confidence            4

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.6e-19  Score=176.86  Aligned_cols=240  Identities=11%  Similarity=0.086  Sum_probs=172.8

Q ss_pred             EEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|+++ ++++.++.|++||..+++....+..+..                   ...+.|.+.         ++.
T Consensus        35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~---------g~~   86 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-------------------PELFALHPN---------GKI   86 (300)
T ss_pred             ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-------------------ccEEEECCC---------CCE
Confidence            35999999976 5667789999999999887766543211                   123444433         454


Q ss_pred             EEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058           89 LVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +++ +..++.|++||+.+++.+..+.  +...+.+++|+|+|+.+++++.++ .+..||..+++....... ...+.+++
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~  163 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAE  163 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEE
Confidence            554 4567899999999988775553  234578899999999999888765 567789988877665442 33567899


Q ss_pred             EccCCCEEEEEC---CeEEEEECCCCeeeEEeecCC-----C--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          167 VSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP-----G--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       167 ~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~-----~--~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      |+|+|+.+++++   +.|++||+++++.+..+..+.     .  ....+.|+|++++++.+...++.+.+||+.+++.. 
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-  242 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-  242 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-
Confidence            999999886543   899999999998877664321     1  23468899999986655435778999999876533 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccC
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~  291 (579)
                          ....+. ..+..+.|+     |+|.+|++++ .+|.|.+||+++++.+...+
T Consensus       243 ----~~~~~~-~~~~~~~~~-----~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       243 ----DYLLVG-QRVWQLAFT-----PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             ----EEEEeC-CCcceEEEC-----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence                112222 234566777     9999998874 58999999999988766553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=2.2e-21  Score=188.96  Aligned_cols=233  Identities=15%  Similarity=0.205  Sum_probs=188.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCC--eEEEEecccccccccccc-ccccccccccCccceEEeeecccccccccCCcE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLY-GNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +...+|+-|+++|.|-+|++|+...+  -|...+..|...+.++++ ..+                           ..+
T Consensus        80 iL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~---------------------------~~l  132 (735)
T KOG0308|consen   80 ILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN---------------------------NEL  132 (735)
T ss_pred             HhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccC---------------------------cee
Confidence            55667889999999999999999877  567777777766665555 222                           678


Q ss_pred             EEEEECCCeEEEEEccCCeE--E--------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           89 LVLGTGGGDVLALAVSAGQL--K--------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~--~--------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      +++|+-|+.|.+||+.++..  +        ..+..|+..+|++++.++.|..|++|+..+.+++||.++++.+..+++|
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH  212 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH  212 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc
Confidence            99999999999999997722  2        1222378889999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      ...|.++..++||+.+++++  |+|++||+...+++.++..|...|.++..+|+-.++++|+ .||.|..=|+++.... 
T Consensus       213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~-  290 (735)
T KOG0308|consen  213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKS-  290 (735)
T ss_pred             ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-CCCcEEecccCCchhh-
Confidence            99999999999999999998  9999999999999999999999999999999999999988 6999999999986322 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                       ..+..-+++...+  ...      ....-+-+++.|+.|+-|..+
T Consensus       291 -tlick~daPv~~l--~~~------~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  291 -TLICKEDAPVLKL--HLH------EHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             -eEeecCCCchhhh--hhc------cccCCceeeeccccceecCCc
Confidence             1333333332222  111      122334677889999999754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.3e-20  Score=165.45  Aligned_cols=241  Identities=13%  Similarity=0.215  Sum_probs=174.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++.|++.|+++|+|+.|++|+|||...    -.+...++.|.+.+..+.|.++                  .       =
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP------------------E-------f   72 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP------------------E-------F   72 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc------------------c-------c
Confidence            459999999999999999999999643    3467777878777776666655                  1       0


Q ss_pred             CcEEEEEECCCeEEEEEccCC-------eE-EEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC------
Q 008058           86 SSLLVLGTGGGDVLALAVSAG-------QL-KWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTG------  149 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~-------~~-~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~------  149 (579)
                      |..+++++.|+++.||.-...       +. ....+....+.|+++.|.|.  |-.+++++.||.+|||+...-      
T Consensus        73 GqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W  152 (361)
T KOG2445|consen   73 GQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW  152 (361)
T ss_pred             cceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence            889999999999999986321       11 12233456788999999994  667999999999999986543      


Q ss_pred             ceeeEee-------cCCCCeeEEEEccC---CCEEEEEC-------CeEEEEECCCC----eeeEEeecCCCCEEEEEEe
Q 008058          150 SLLGKFR-------ASTKGISCMAVSSD---GKMLATAA-------GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       150 ~~~~~~~-------~~~~~v~~l~~~p~---g~~l~~~~-------g~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~  208 (579)
                      .....++       .+..+..|+.|+|.   ..+|+.|+       +.++||....+    ..+.++.+|..+|+.++|.
T Consensus       153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA  232 (361)
T KOG2445|consen  153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA  232 (361)
T ss_pred             hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence            2222232       24457889999974   46888887       48999976543    3466788999999999999


Q ss_pred             cCC----CEEEEEecCCCeEEEEEcCCCc---------------cccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058          209 DNG----KYVLSSAVGERYIALWRTDGVK---------------KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       209 ~~~----~~l~s~s~~d~~i~vwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  269 (579)
                      |+-    ..+++++ .|| |+||.+....               ......+..+..|...+-.+.|+     -.|..|++
T Consensus       233 Pn~Gr~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wN-----mtGtiLsS  305 (361)
T KOG2445|consen  233 PNIGRSYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWN-----MTGTILSS  305 (361)
T ss_pred             cccCCceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEe-----eeeeEEee
Confidence            962    3466665 799 9999987421               01112233344455444555665     68899999


Q ss_pred             EEcCCeEEEEECC
Q 008058          270 ISETGVCYIWYGQ  282 (579)
Q Consensus       270 ~~~dg~i~iwd~~  282 (579)
                      .+.||+|++|...
T Consensus       306 tGdDG~VRLWkan  318 (361)
T KOG2445|consen  306 TGDDGCVRLWKAN  318 (361)
T ss_pred             cCCCceeeehhhh
Confidence            9999999999754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=169.03  Aligned_cols=262  Identities=18%  Similarity=0.240  Sum_probs=182.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc-ccccccCccceEEeeec----ccccccccC
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL-EREHLSVDYTCMKWLSV----DRKKKRKLG   85 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~w~~~----~~~~~~~~~   85 (579)
                      +.|||||..|++-+.|..+++|++-..-....-   ..+.   .+.... ..-.....+-..+|-+.    +|.      
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~---~~~~---~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~------  122 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA---DGPL---NFSKHLSYRYQEGETVYDYCWYSRMKSDQPS------  122 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCC---CCcc---ccccceeEEeccCCEEEEEEeeeccccCCCc------
Confidence            489999999999999999999997422110000   0000   000000 00011223345566542    233      


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEec-CCCCC---CEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCcee--eEee--
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPG---GVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLL--GKFR--  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~---~V~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~--~~~~--  156 (579)
                      ..++++.+.+.-|++||.-+|+....+. -.|..   ...+++|+|||.+|++| ....|++||+ +.|+..  ....  
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence            7788888889999999999998765442 12333   34689999999999887 5678999999 555422  2211  


Q ss_pred             ---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          157 ---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       157 ---~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                         +..+-+.|++|+|-. +.++.|+  .++-||.-..+.++..+.+|.+.|+.+.|.++|+.|++++..|..|-.||++
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence               235678999999954 5888888  6888888888889999999999999999999999999999889999999999


Q ss_pred             CCccccceeEEeeecCce-eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC-ceeecccCC
Q 008058          231 GVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTKA  292 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  292 (579)
                      .....    ++.+..+.. .-.-+.|.   ..|.|++|++|+.||.|++||+++ ++.......
T Consensus       282 ~~~~p----v~~L~rhv~~TNQRI~FD---ld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~  338 (406)
T KOG2919|consen  282 YSRDP----VYALERHVGDTNQRILFD---LDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN  338 (406)
T ss_pred             hccch----hhhhhhhccCccceEEEe---cCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence            86533    333433322 33334454   238999999999999999999987 554443333

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.2e-21  Score=179.26  Aligned_cols=198  Identities=20%  Similarity=0.239  Sum_probs=165.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------CCceeeEee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------TGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---------~~~~~~~~~  156 (579)
                      +.+++.|+-.|.|++|.+.+|..+..+ .+|-..|+++.|+.||.+|++|+.||.|.+|++.         +-++++.|.
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~  171 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS  171 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence            888888889999999999999998655 7899999999999999999999999999999864         235788899


Q ss_pred             cCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          157 ASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       157 ~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .|.-+|+.+...+.  ...+++++  .++++||+..+..+.++. ...++++++.+|-++.++.|+ .+|.|.+.++...
T Consensus       172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKL  249 (476)
T ss_pred             cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-CcceEEeeehhcC
Confidence            99999999998865  35788887  899999999999988886 678899999999999998887 7999999887654


Q ss_pred             cccc-----------ceeEEeeecCc--eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          233 KKQS-----------ASCVLAMEHPA--VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       233 ~~~~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ...+           ......+..+.  ..++|.+.+     -||..|++|+.||++.|||+.+.+.+++..
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-----~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-----TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEe-----cCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence            3111           11122222333  478899988     899999999999999999999988887765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.1e-20  Score=183.46  Aligned_cols=334  Identities=13%  Similarity=0.116  Sum_probs=239.5

Q ss_pred             ceEEEEcc-CCC-EEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            8 DILTSFSP-ALD-YFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         8 ~~~~~fs~-dg~-~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+++.| ++. .+|.|+.+..|.++.-..+  +.+.++.+|...+.++.|+..   ++                    
T Consensus       148 pLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~---~~--------------------  204 (764)
T KOG1063|consen  148 PLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL---GG--------------------  204 (764)
T ss_pred             hHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc---CC--------------------
Confidence            45667777 344 4455666777888764433  567788899988888888765   11                    


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCe------------------------EEE------EecCCCCCCEEEEEEccCCCEEE
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQ------------------------LKW------RLSDCHPGGVSAISFATHGSCIY  133 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~------------------------~~~------~~~~~h~~~V~~l~~~~~~~~l~  133 (579)
                       +.-++++++.|..|+||.+.-+.                        .+.      .+..||.+.|+++.|+|.+..|+
T Consensus       205 -~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LL  283 (764)
T KOG1063|consen  205 -DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLL  283 (764)
T ss_pred             -CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhe
Confidence             14578889999999999986433                        011      22359999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCcee-------eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008058          134 SAGADGMVCEIDPLTGSLL-------GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA  201 (579)
Q Consensus       134 s~~~dg~v~iwd~~~~~~~-------~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~  201 (579)
                      +++.|.++.+|...+..-+       ....+........-|+|+++.+++-+  |..++|..+..   .....+.||...
T Consensus       284 SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~  363 (764)
T KOG1063|consen  284 SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG  363 (764)
T ss_pred             ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence            9999999999987654211       12223344788999999999888877  99999983332   234456899999


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--------------------c-------------------------
Q 008058          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--------------------S-------------------------  236 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~--------------------~-------------------------  236 (579)
                      |+.++|+|.|.+|++.| .|.+-+++-.-..+..                    .                         
T Consensus       364 V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             ceeeeecCCCCEEEEec-cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence            99999999999999998 6988887744311000                    0                         


Q ss_pred             ----------------------------ceeEE--------------------------------------------eee
Q 008058          237 ----------------------------ASCVL--------------------------------------------AME  244 (579)
Q Consensus       237 ----------------------------~~~~~--------------------------------------------~~~  244 (579)
                                                  .+..+                                            .+-
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence                                        00000                                            001


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      .|+..+.+++.+     |+|+++|+++...     .|++|+..+-.+.+.++.+...+.... |+|+++    ++++++.
T Consensus       523 GHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~-FSpdg~----~LLsvsR  592 (764)
T KOG1063|consen  523 GHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA-FSPDGR----YLLSVSR  592 (764)
T ss_pred             cCceeEEEEEec-----CCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE-ECCCCc----EEEEeec
Confidence            223344455555     8999999997643     689999988888887777777766655 899999    9999999


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      |....++..    ..+....--|...+.|+--|+.+.|+||+.++ +|+|.|+++++|...+
T Consensus       593 DRt~sl~~~----~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F-aTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  593 DRTVSLYEV----QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF-ATASRDKKVKVWEEPD  649 (764)
T ss_pred             CceEEeeee----ecccchhhhhccccccceEEEEcccCccccee-EEecCCceEEEEeccC
Confidence            876655442    11122222255577899889999999999998 9999999999998853

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.4e-19  Score=175.83  Aligned_cols=242  Identities=12%  Similarity=0.170  Sum_probs=190.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+++|  .++|||.+.+.||.+-.||.|.||++..+-+...+                ..|+.+..+..++|..      
T Consensus        24 ~Ps~I--~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v----------------i~g~~drsIE~L~W~e------   79 (691)
T KOG2048|consen   24 KPSEI--VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV----------------IHGPEDRSIESLAWAE------   79 (691)
T ss_pred             eccce--EEEEEeccCCceeeeccCCcEEEEccCCCceeeEE----------------EecCCCCceeeEEEcc------
Confidence            35788  67799999999999999999999999876544322                2256677888999984      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--eecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~  159 (579)
                          +..|++.+.+|.|.-||+.+++....+ ....+.|++++.+|.+..++.|+.||.++.++...++....  +.-.+
T Consensus        80 ----~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~  154 (691)
T KOG2048|consen   80 ----GGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQK  154 (691)
T ss_pred             ----CCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccccc
Confidence                677999999999999999999988666 45778999999999999999999999888888777765443  44456


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      +.|.+++|+|++..+++|+  |.|++||...+..+....        +...-|.++.|-.++ .++++- .-|+|.+||.
T Consensus       155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD-S~G~V~FWd~  232 (691)
T KOG2048|consen  155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD-SAGTVTFWDS  232 (691)
T ss_pred             ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec-CCceEEEEcc
Confidence            7999999999999999998  889999999987765221        123347788888776 456664 5899999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ..+...     .....+...+.+++..     +++.++++++.|+.|.-|...+.
T Consensus       233 ~~gTLi-----qS~~~h~adVl~Lav~-----~~~d~vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  233 IFGTLI-----QSHSCHDADVLALAVA-----DNEDRVFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             cCcchh-----hhhhhhhcceeEEEEc-----CCCCeEEEccCCCceEEEEecCC
Confidence            998754     2333333444455555     78899999999999988876555

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.6e-20  Score=162.20  Aligned_cols=235  Identities=17%  Similarity=0.174  Sum_probs=175.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +..|++|+.|+.|+|+....+..  ....+.||.+||+.++|..  .|..|++|+.||.|.+|.-..|+  ....+..|.
T Consensus        23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~  102 (299)
T KOG1332|consen   23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS  102 (299)
T ss_pred             cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence            78899999999999999986542  2233479999999999965  79999999999999999977763  344577899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC---C-----------CEEEEEe
Q 008058          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN---G-----------KYVLSSA  218 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~---~-----------~~l~s~s  218 (579)
                      ..|++++|.|.  |-.|++++  |.|.|.+.++.   ...+....|.-.|+++.|.|.   |           +.|+++|
T Consensus       103 ~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgG  182 (299)
T KOG1332|consen  103 ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGG  182 (299)
T ss_pred             ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccC
Confidence            99999999996  55677776  99999888754   223445789999999999986   4           5689998


Q ss_pred             cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                       .|+.|+||+...+.-.   .-.++..+...++-+++.+..- --..+|+++++||++.||-.+ .+.            
T Consensus       183 -cDn~VkiW~~~~~~w~---~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~-~e~------------  244 (299)
T KOG1332|consen  183 -CDNLVKIWKFDSDSWK---LERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKD-EEY------------  244 (299)
T ss_pred             -CccceeeeecCCcchh---hhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEec-Ccc------------
Confidence             6999999999887422   2234667777778788873211 123689999999999999643 110            


Q ss_pred             ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                            ...+                              ...++   .....++++.||+.|..|+++++ |+.+++|.
T Consensus       245 ------e~wk------------------------------~tll~---~f~~~~w~vSWS~sGn~LaVs~G-dNkvtlwk  284 (299)
T KOG1332|consen  245 ------EPWK------------------------------KTLLE---EFPDVVWRVSWSLSGNILAVSGG-DNKVTLWK  284 (299)
T ss_pred             ------Cccc------------------------------ccccc---cCCcceEEEEEeccccEEEEecC-CcEEEEEE
Confidence                  0001                              00000   11236899999999999966665 99999995

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.9e-20  Score=173.73  Aligned_cols=253  Identities=18%  Similarity=0.203  Sum_probs=173.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEE---EEeccccccccc-cccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQ---TEFADIASTETT-SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      |+|+|.|+.|..|.|||+.--..+   ..+-...+.... .........+|.+ .+-.+.|....        .+.|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~--------~nVLaSg  262 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNF--------RNVLASG  262 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhcccc--------ceeEEec
Confidence            689999999999999997632211   111100000000 0000000113322 22244454432        6789999


Q ss_pred             ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEEEEccC
Q 008058           93 TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +.|.+|++||+.++++...+ ..|.+.|.++.|+| ...+|++|+.|++|.+.|++.-. .-..++ ..+.|-.++|.|.
T Consensus       263 saD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~  340 (463)
T KOG0270|consen  263 SADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPH  340 (463)
T ss_pred             CCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCC
Confidence            99999999999999998666 46999999999999 45679999999999999998432 222333 3568999999997


Q ss_pred             CCEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          171 GKMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ....+.++   |+++-+|+|.. +++.+++.|.++|+++++++....++++++.|+.|++|++......   .+......
T Consensus       341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---~v~~~~~~  417 (463)
T KOG0270|consen  341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK---SVKEHSFK  417 (463)
T ss_pred             CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc---cccccccc
Confidence            66544443   99999999975 8999999999999999999887766666668999999999876543   11111111


Q ss_pred             ceeeEeEEecCCcccCC-CcEEEEEEcCCeEEEEECCCceeec
Q 008058          247 AVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      -..+.|..+.     |+ ..+++.|+..+.++|||+.+...++
T Consensus       418 ~~rl~c~~~~-----~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  418 LGRLHCFALD-----PDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ccceeecccC-----CCcceEEEecCccceEEEeecccChhHH
Confidence            1123444444     44 3567778888899999988776543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2e-19  Score=176.42  Aligned_cols=240  Identities=13%  Similarity=0.130  Sum_probs=188.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|..+  +|++ |..|.+.+.+|.|.-||+.+++....+....+.+.+.+.++.                         
T Consensus        70 rsIE~L--~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-------------------------  121 (691)
T KOG2048|consen   70 RSIESL--AWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-------------------------  121 (691)
T ss_pred             CceeeE--EEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-------------------------
Confidence            456455  8985 456778888999999999999999988877777766665555                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----c
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----A  157 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~  157 (579)
                        +..+++|+.||.++.++...++.... .+....+.|.++.|+|++..+++|+.||.|++||...+..++...     .
T Consensus       122 --~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l  199 (691)
T KOG2048|consen  122 --NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL  199 (691)
T ss_pred             --cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence              77899999999888888888886533 344566899999999999999999999999999999998766221     1


Q ss_pred             ---CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          158 ---STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       158 ---~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                         ...-|.++.|-.++ .+++|+  |+|.+||...+..+..+..|...|.+++..+++.+++++| .|+.|..|...+.
T Consensus       200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~  277 (691)
T KOG2048|consen  200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTN  277 (691)
T ss_pred             ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence               12256777777554 666776  9999999999999999999999999999999999999998 6999999988777


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      +.. ........++...+.+++..     +  ..+++|+.|+.+.+-....
T Consensus       278 ~~~-wv~~~~r~~h~hdvrs~av~-----~--~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  278 KSE-WVINSRRDLHAHDVRSMAVI-----E--NALISGGRDFTLAICSSRE  320 (691)
T ss_pred             ccc-eeeeccccCCcccceeeeee-----c--ceEEecceeeEEEEccccc
Confidence            542 22222334555555555554     3  4899999999998876544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=6.7e-21  Score=170.24  Aligned_cols=257  Identities=14%  Similarity=0.128  Sum_probs=183.8

Q ss_pred             EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058          120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       120 V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~  197 (579)
                      ..|+.|++.|.++++|+.||.|.+||+.+...-+.+.+|..+|++++||+||+.|++++  ..|.+||+..|.+++.+. 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            78999999999999999999999999999998889999999999999999999999999  899999999999988886 


Q ss_pred             CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       198 h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                      ..++|....|+|-.+..+.++--+..-.+-++..++..    ++.....   ...-++..|.     +.|++|++|+..|
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~----~Lp~d~d~dln~sas~~~fd-----r~g~yIitGtsKG  175 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS----VLPKDDDGDLNSSASHGVFD-----RRGKYIITGTSKG  175 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee----eccCCCcccccccccccccc-----CCCCEEEEecCcc
Confidence            78999999999965433333334555566666553311    1121111   1112223454     8999999999999


Q ss_pred             eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC-ceeEEEe--cCCCC
Q 008058          275 VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK-PSFQKIL--VNSGE  351 (579)
Q Consensus       275 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~--~h~~~  351 (579)
                      .+.+||.++.+.+..++-......-...++..+.    .++.-+.|..+|.++..-+...|.... ...+++.  ..+-.
T Consensus       176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~----~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGR----FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             eEEEEecchheeeeeeeechheeeeEEEEeccCc----EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            9999999999888766544411111112344444    777788888888877663333332211 1111111  13335


Q ss_pred             cEEEeecCCcceeeccccceecccceee--eeceeeeccCC
Q 008058          352 DINLNCSQDGVLLPMSQSLLKSKRGRYV--QNRVTALDRAN  390 (579)
Q Consensus       352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~--~~~~~~~~~~~  390 (579)
                      ..+++||.||.|++++.+.-+.+++|+-  ++.++.+.+..
T Consensus       252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k  292 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK  292 (405)
T ss_pred             hhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc
Confidence            7788999999999777777899999985  33466665444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.4e-20  Score=168.12  Aligned_cols=188  Identities=14%  Similarity=0.210  Sum_probs=161.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC------CC-----------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP------LT-----------  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~------~~-----------  148 (579)
                      ...+.+++.|.+-+||.+++|.|+.++ .||.+.|+++.|++.+.++++++.|++-.||..      ..           
T Consensus       160 qpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe  238 (481)
T KOG0300|consen  160 QPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE  238 (481)
T ss_pred             CcceeecccccceeEEeeccccceeee-cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence            457888999999999999999999877 689999999999999999999999999999962      11           


Q ss_pred             -------------------C----ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE
Q 008058          149 -------------------G----SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR  203 (579)
Q Consensus       149 -------------------~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~  203 (579)
                                         +    .++..+.+|...|.+..|-..|+.+++++  .+..+||++++.++..+.||....+
T Consensus       239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELt  318 (481)
T KOG0300|consen  239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELT  318 (481)
T ss_pred             hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcc
Confidence                               0    13456788999999999999999999999  8999999999999999999999999


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      .++-+|..+.+++++ .|.+.++||++..- .   .+..+..+...+..+.|.      .+..+++|++|.+|++||+++
T Consensus       319 HcstHptQrLVvTsS-rDtTFRLWDFReaI-~---sV~VFQGHtdtVTS~vF~------~dd~vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  319 HCSTHPTQRLVVTSS-RDTTFRLWDFREAI-Q---SVAVFQGHTDTVTSVVFN------TDDRVVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             ccccCCcceEEEEec-cCceeEeccchhhc-c---eeeeecccccceeEEEEe------cCCceeecCCCceEEEeeecc
Confidence            999999988888776 79999999998432 1   344556666677777785      567899999999999999987


Q ss_pred             ce
Q 008058          284 IE  285 (579)
Q Consensus       284 ~~  285 (579)
                      .+
T Consensus       388 MR  389 (481)
T KOG0300|consen  388 MR  389 (481)
T ss_pred             cc
Confidence            64

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=7.2e-20  Score=171.59  Aligned_cols=205  Identities=14%  Similarity=0.196  Sum_probs=160.4

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCc
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATH-GSCIYSAGADGM  140 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~  140 (579)
                      ...+++++|+|..+       ..++++|...|+|-+||+.+.+.   -..+...|..+|.++.|+|. ...+++.+.||+
T Consensus       186 ~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  186 DRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             ccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            56788999999873       37899999999999999953221   12334679999999999994 456999999999


Q ss_pred             EEEEeCCCCce--eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEE
Q 008058          141 VCEIDPLTGSL--LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       141 v~iwd~~~~~~--~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      |+.-|+..+..  +.........+..+.|+.+...++.++  |...+||.+++.. ...+.-|...|.+++++|...+++
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l  338 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL  338 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence            99999986633  333333445788899998888777777  9999999998655 666777889999999999877655


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ++++-|++.+|||++....... .....-.+...+..++|+     |.+-.|++.+.|..|+|||..
T Consensus       339 aT~s~D~T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFS-----Ps~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  339 ATASLDQTAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFS-----PSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             eecccCcceeeeehhhhcCCCC-cceecccccceeeeeEEc-----CCCCceEeeccCCceEEeecc
Confidence            5555899999999998654421 233344556678888998     888889999999999999973

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.3e-19  Score=165.96  Aligned_cols=245  Identities=15%  Similarity=0.192  Sum_probs=187.4

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..||  -+++|.|+|. .+++++...-++.||+.+++.... ....              |+..   ..+.-+..++.  
T Consensus       257 ~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~-~~~~--------------g~e~---~~~e~FeVShd--  314 (514)
T KOG2055|consen  257 KFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL-KPPY--------------GVEE---KSMERFEVSHD--  314 (514)
T ss_pred             cCcc--ceeeecCCCceEEEecccceEEEEeeccccccccc-cCCC--------------Cccc---chhheeEecCC--
Confidence            4688  5559999998 888999889999999988775432 1111              1110   01111111111  


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-  160 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-  160 (579)
                          +++|++.+..|.|.+....+++.+..+.  -.+.|.+++|+.+++.|++++.+|.|++||++...+++.|....+ 
T Consensus       315 ----~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v  388 (514)
T KOG2055|consen  315 ----SNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV  388 (514)
T ss_pred             ----CCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence                7899999999999999999999886663  468899999999999999999999999999999999999885443 


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCC------CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCC
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSD------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDG  231 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~  231 (579)
                      .=++++.+++|.++|+|+  |.|.|||..+      .+++.++..-...|+++.|+||++.|+.++. .+..+++-.+.+
T Consensus       389 ~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  389 HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            346788889999999999  9999999653      4667777667788999999999999887763 355788888776


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      -..-+  ..-+...+-..++|+.|+     |.|.++|.|..+|++.+|.+.
T Consensus       469 ~TVFs--NfP~~n~~vg~vtc~aFS-----P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFS--NFPTSNTKVGHVTCMAFS-----PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeec--cCCCCCCcccceEEEEec-----CCCceEEeecCCCceeeEeec
Confidence            54221  111123445567899998     999999999999999999763

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.5e-18  Score=175.85  Aligned_cols=263  Identities=15%  Similarity=0.095  Sum_probs=194.3

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                      .+.++|.+.         +.+|++++.||.|++|+.... +.. ....-+...|.+++.  ++.+|++|+.+++|..|.+
T Consensus        16 ~t~i~~d~~---------gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   16 LTLICYDPD---------GEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             eEEEEEcCC---------CCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEee--cccceEEeeccceEEEeeC
Confidence            556666664         789999999999999998776 333 222336778888876  4558999999999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      .+++.-..+....-++.+++++.+|++++.|+  -.|++-++.+......+.+|.++|.++.|+|++.+|++++ .||.|
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v  162 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKV  162 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-cCceE
Confidence            88865444444556899999999999999999  6899999999888999999999999999999999999987 69999


Q ss_pred             EEEEcCCCccccc-eeEE-eeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEe-eec
Q 008058          225 ALWRTDGVKKQSA-SCVL-AMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS-SSE  300 (579)
Q Consensus       225 ~vwd~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~  300 (579)
                      ++|++.++..... ..+. ..+.. ........|+     |+|..+++.+.|+.|++|+..+.+....+.+..... .+.
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-----PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeec-----CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence            9999998764310 0000 01111 4455667776     999999999999999999999888766554332221 233


Q ss_pred             ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCccee
Q 008058          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLL  364 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (579)
                      ..|+|.|+    +|+++..+|.+-+|+-       ..    .+. ......|.+++|-|++.-+
T Consensus       238 ~~wsPnG~----YiAAs~~~g~I~vWnv-------~t----~~~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  238 LQWSPNGK----YIAASTLDGQILVWNV-------DT----HER-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             EEEcCCCc----EEeeeccCCcEEEEec-------cc----chh-ccccceeEEEecCCCCCee
Confidence            34788888    8888888664443331       11    111 1223458888888888776

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=7e-19  Score=165.05  Aligned_cols=281  Identities=14%  Similarity=0.115  Sum_probs=198.9

Q ss_pred             CCcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeec
Q 008058            3 SSNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ..+|  .+++|+|..  +.+|+|..-|+|-+||+.+.+    -+..+..|..++                  +++.+.|.
T Consensus       186 ~~Ri--t~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~V------------------s~l~F~P~  245 (498)
T KOG4328|consen  186 DRRI--TSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPV------------------SGLKFSPA  245 (498)
T ss_pred             ccce--EEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccc------------------cceEecCC
Confidence            4677  667999966  488889899999999995222    233444444444                  45555555


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-ee
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LG  153 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~  153 (579)
                      +        ...+++.+.||+|++-|++.+...  ... ........++.|+.+...++.+..=|...+||++++.. ..
T Consensus       246 n--------~s~i~ssSyDGtiR~~D~~~~i~e~v~s~-~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~  316 (498)
T KOG4328|consen  246 N--------TSQIYSSSYDGTIRLQDFEGNISEEVLSL-DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE  316 (498)
T ss_pred             C--------hhheeeeccCceeeeeeecchhhHHHhhc-CccceeeeeccccCCCccEEEeecccceEEEEeecCCccch
Confidence            4        667999999999999999876542  222 12345678889999888888898888999999997754 55


Q ss_pred             EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      .+.-|...|++++++|... ++++++  ++.+|||++.-..    +.....|...|.+..|+|++-.|++.+ .|..|+|
T Consensus       317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~-~D~~IRv  395 (498)
T KOG4328|consen  317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC-QDNEIRV  395 (498)
T ss_pred             hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec-cCCceEE
Confidence            6777888999999999655 566777  8999999986322    233356999999999999988888887 7999999


Q ss_pred             EEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc-cCCceEEeeecccCc
Q 008058          227 WRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKILSSSEDVNS  304 (579)
Q Consensus       227 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~  304 (579)
                      ||..- +...  .....+.|+...-....--...++|+..+|++|..-..|-|||...++.+.. +.|....+.+...+-
T Consensus       396 ~dss~~sa~~--~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  396 FDSSCISAKD--EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             eecccccccC--CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence            99841 0100  1223344544332222111233449999999999999999999999986665 555555666666555


Q ss_pred             ccccccchhhhhccc
Q 008058          305 KSQKSATAAIFAAKL  319 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~  319 (579)
                      |-..    .+++|+.
T Consensus       474 P~~~----~~~aG~~  484 (498)
T KOG4328|consen  474 PMRD----TLAAGGN  484 (498)
T ss_pred             cccc----ceeccCC
Confidence            5544    4555544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.82  E-value=2.3e-18  Score=154.07  Aligned_cols=225  Identities=12%  Similarity=0.129  Sum_probs=169.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+||  ++|+|.++ ..+++|+-||.|+.+|+.++.... +-.|..                  .+.|+...+.     
T Consensus        53 ~~~pl--L~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~-igth~~------------------~i~ci~~~~~-----  105 (323)
T KOG1036|consen   53 HGAPL--LDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ-IGTHDE------------------GIRCIEYSYE-----  105 (323)
T ss_pred             cCCce--eeeeccCC-ceEEEeccCceEEEEEecCCccee-eccCCC------------------ceEEEEeecc-----
Confidence            35899  99999974 468899999999999999887543 333443                  3444444432     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--ST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~  159 (579)
                          ...+++|+.|+.|++||+........+.  ....|.++..  .|+.|+.|+.|..|.+||+++.......+.  -+
T Consensus       106 ----~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lk  177 (323)
T KOG1036|consen  106 ----VGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLK  177 (323)
T ss_pred             ----CCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccce
Confidence                5679999999999999999755554442  4458998887  467899999999999999998765443322  22


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCC----eeeEEeecCC---------CCEEEEEEecCCCEEEEEecCCCeE
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDH----KKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~----~~~~~~~~h~---------~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      -.+.|+++-|++.-+++++  |.|.+=.+...    +....|+.|.         -||++|+|+|-...|+++| .||.|
T Consensus       178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG-sDG~V  256 (323)
T KOG1036|consen  178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG-SDGIV  256 (323)
T ss_pred             eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC-CCceE
Confidence            3789999999888888887  88887666554    3344566664         3699999999988999998 59999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      .+||+...+..     ..+..-...+....|+     .+|..||+++.
T Consensus       257 ~~Wd~~~rKrl-----~q~~~~~~SI~slsfs-----~dG~~LAia~s  294 (323)
T KOG1036|consen  257 NIWDLFNRKRL-----KQLAKYETSISSLSFS-----MDGSLLAIASS  294 (323)
T ss_pred             EEccCcchhhh-----hhccCCCCceEEEEec-----cCCCeEEEEec
Confidence            99999987754     2333445567788887     89999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.4e-18  Score=156.45  Aligned_cols=296  Identities=19%  Similarity=0.218  Sum_probs=199.0

Q ss_pred             CcccceEEEEcc-----CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            4 SNIRDILTSFSP-----ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         4 ~~V~~~~~~fs~-----dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .||  .-++|++     .-+.+|+++. .++.+|+....--+..++....             .......-.++|.-...
T Consensus        39 ~~I--~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D-------------~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   39 KPI--FGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYAD-------------EDHDESFYTCSWSYDSN  102 (385)
T ss_pred             Ccc--ceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccC-------------CCCCcceEEEEEEecCC
Confidence            567  4458875     2346777775 4788998754332222221111             11122333456765443


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF--  155 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~--  155 (579)
                      .     +..++++|+.-|.|+|.|+.++++...+ .+|...|+.+.|+|+. +++++++.|..|++|++++..++..|  
T Consensus       103 ~-----~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  103 T-----GNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             C-----CCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence            2     2668899999999999999999998666 6899999999999965 67999999999999999999998886  


Q ss_pred             -ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee------e----------------EEe------ecCCCCEEE
Q 008058          156 -RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK------M----------------QKF------SGHPGAVRF  204 (579)
Q Consensus       156 -~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~------~----------------~~~------~~h~~~v~~  204 (579)
                       .+|.+.|.++.|+++|.++++++  .+|++|++...+.      .                ..|      .-|...|-+
T Consensus       177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC  256 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC  256 (385)
T ss_pred             cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence             46888999999999999999998  8999999973211      0                011      135555666


Q ss_pred             EEEecCCCEEEEEecCCCeEEEEEcCC-Ccc-----cccee---EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          205 MTFSDNGKYVLSSAVGERYIALWRTDG-VKK-----QSASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       205 l~~~~~~~~l~s~s~~d~~i~vwd~~~-~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                      +.|-  |.++++-+ -++.|..|..-. .+.     ....+   ...+.-+...+..+.|   .++|-++.||.|.+.|.
T Consensus       257 vrw~--gd~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf---~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  257 VRWF--GDFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF---AFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHH--hhheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE---eecHHHHHHhhccCCCc
Confidence            6665  56888877 588999998722 111     11111   1122222222222222   24478899999999999


Q ss_pred             EEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE
Q 008058          276 CYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL  355 (579)
Q Consensus       276 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~  355 (579)
                      +++||+++.+.....     ...         +                                     ......|.+.
T Consensus       331 v~vwdL~~~ep~~~t-----tl~---------~-------------------------------------s~~~~tVRQ~  359 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKCT-----TLT---------H-------------------------------------SKSGSTVRQT  359 (385)
T ss_pred             EEEEECCCCCCccCc-----eEE---------e-------------------------------------ccccceeeee
Confidence            999998776542100     000         0                                     0011257888


Q ss_pred             eecCCcceeeccccceecccceee
Q 008058          356 NCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       356 ~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +||.||.+| +-...|+++--|+.
T Consensus       360 sfS~dgs~l-v~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSIL-VLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEE-EEEeCCCcEEEEEe
Confidence            899999999 66666999888875

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=9.7e-18  Score=149.83  Aligned_cols=253  Identities=11%  Similarity=0.092  Sum_probs=174.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC---------Cc
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLT---------GS  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~---------~~  150 (579)
                      |+.+++|+.|++|+|||.....    +.... +.|.+.|..+.|.+  -|+.+++|+.|+++.||.=..         ..
T Consensus        25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv  103 (361)
T KOG2445|consen   25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWV  103 (361)
T ss_pred             CceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeE
Confidence            8889999999999999975443    22222 57999999999965  588999999999999997421         12


Q ss_pred             eeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC------eeeEEee-------cCCCCEEEEEEecC---
Q 008058          151 LLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH------KKMQKFS-------GHPGAVRFMTFSDN---  210 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~------~~~~~~~-------~h~~~v~~l~~~~~---  210 (579)
                      ...++......|+.+.|.|.  |-.+++++  |.++||+.-..      .+...+.       .+..+..|+.|+|.   
T Consensus       104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            33456666779999999994  66788877  99999987543      2222222       46677889999874   


Q ss_pred             CCEEEEEecCC-----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          211 GKYVLSSAVGE-----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       211 ~~~l~s~s~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .++|+.++ .+     +.++||....+... ...+..+..+...+..++|.+..- ..-..||+++.|| |+||++....
T Consensus       184 ~p~iAvgs-~e~a~~~~~~~Iye~~e~~rK-w~kva~L~d~~dpI~di~wAPn~G-r~y~~lAvA~kDg-v~I~~v~~~~  259 (361)
T KOG2445|consen  184 EPLIAVGS-DEDAPHLNKVKIYEYNENGRK-WLKVAELPDHTDPIRDISWAPNIG-RSYHLLAVATKDG-VRIFKVKVAR  259 (361)
T ss_pred             CceEEEEc-ccCCccccceEEEEecCCcce-eeeehhcCCCCCcceeeeeccccC-CceeeEEEeecCc-EEEEEEeecc
Confidence            45677776 33     37899987665422 234455667777888888874321 1346789999999 9999875432


Q ss_pred             eecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008058          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .--..+                     .+.++...+     +         ........+..|.++|+++.|.-.|..| 
T Consensus       260 s~i~~e---------------------e~~~~~~~~-----~---------l~v~~vs~~~~H~~~VWrv~wNmtGtiL-  303 (361)
T KOG2445|consen  260 SAIEEE---------------------EVLAPDLMT-----D---------LPVEKVSELDDHNGEVWRVRWNMTGTIL-  303 (361)
T ss_pred             chhhhh---------------------cccCCCCcc-----c---------cceEEeeeccCCCCceEEEEEeeeeeEE-
Confidence            100000                     001111100     1         0111122455799999999999999999 


Q ss_pred             ccccceecccceee
Q 008058          366 MSQSLLKSKRGRYV  379 (579)
Q Consensus       366 ~s~s~d~~~~~w~~  379 (579)
                      .|.|.||.+|+|..
T Consensus       304 sStGdDG~VRLWka  317 (361)
T KOG2445|consen  304 SSTGDDGCVRLWKA  317 (361)
T ss_pred             eecCCCceeeehhh
Confidence            99999999999976

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.80  E-value=1.6e-18  Score=168.46  Aligned_cols=122  Identities=21%  Similarity=0.403  Sum_probs=95.4

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.-|.++  .|+| +..+||+|+.|..|+||.+-.|.... +..           +...-++....+.|+.+++.     
T Consensus        79 ~d~VtDl--~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LSa-----------pe~~~g~~~~~vE~l~fHpT-----  139 (1012)
T KOG1445|consen   79 GDQVTDL--GFSPFADELLATCSRDEPVKIWKLPRGHSQK-LSA-----------PEIDVGGGNVIVECLRFHPT-----  139 (1012)
T ss_pred             cceeecc--CccccchhhhhcccCCCeeEEEecCCCcccc-cCC-----------cceeecCCceEEEEeecccC-----
Confidence            4456556  8999 45589999999999999987553321 111           11122555777788888876     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~  148 (579)
                          ..-|+..+..|.+++||+.+++....+ .+|...|.+..|+.||..+++++.|..|+|||.+.
T Consensus       140 ----aDgil~s~a~g~v~i~D~stqk~~~el-~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  140 ----ADGILASGAHGSVYITDISTQKTAVEL-SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             ----cCceEEeccCceEEEEEcccCceeecc-cCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence                344777788899999999999988666 68999999999999999999999999999999863

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=7.4e-18  Score=159.44  Aligned_cols=286  Identities=13%  Similarity=0.155  Sum_probs=198.1

Q ss_pred             cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccC
Q 008058           28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSA  105 (579)
Q Consensus        28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~  105 (579)
                      .+++||.........+-.+..                ......+.|..          .++|++++..|.  |++|.-..
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~----------------~pg~~s~~w~~----------~n~lvvas~~gdk~~~~~~K~g   66 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTA----------------EPGDFSFNWQR----------RNFLVVASMAGDKVMRIKEKDG   66 (673)
T ss_pred             ceEEeecccccCccccccCCC----------------CCcceeeeccc----------cceEEEeecCCceeEEEecccC
Confidence            689999876554444432221                11244566755          344666666655  77886433


Q ss_pred             C--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeE
Q 008058          106 G--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQL  181 (579)
Q Consensus       106 ~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i  181 (579)
                      .  +.. .+.......-.|++......++++|+..+.|+|||++...+.+.+++|...|+++.++....+||+++  |.|
T Consensus        67 ~~~~Vp-~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdi  145 (673)
T KOG4378|consen   67 KTPEVP-RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDI  145 (673)
T ss_pred             CCCccc-eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcE
Confidence            2  221 11111112334554445568999999999999999997777888999999999999999999999998  899


Q ss_pred             EEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcc
Q 008058          182 KTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV  260 (579)
Q Consensus       182 ~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                      .|..+.++....+|... ...|.-+.|+|..+++++..+++|.|.+||+......   .. ....|......+||++   
T Consensus       146 iih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~---~~-~~~~HsAP~~gicfsp---  218 (673)
T KOG4378|consen  146 IIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI---FH-ASEAHSAPCRGICFSP---  218 (673)
T ss_pred             EEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc---cc-hhhhccCCcCcceecC---
Confidence            99999999888788644 3456689999999988887778999999999887644   22 2334555667778873   


Q ss_pred             cCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCc
Q 008058          261 DDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKP  340 (579)
Q Consensus       261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~  340 (579)
                       .+...|++.+.|..|++||....+....+.... .....+ |++++.    ++++|+..|.++.+|       -.....
T Consensus       219 -sne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~-Plstva-f~~~G~----~L~aG~s~G~~i~YD-------~R~~k~  284 (673)
T KOG4378|consen  219 -SNEALLVSVGYDKKINIYDIRSQASTDRLTYSH-PLSTVA-FSECGT----YLCAGNSKGELIAYD-------MRSTKA  284 (673)
T ss_pred             -CccceEEEecccceEEEeecccccccceeeecC-Ccceee-ecCCce----EEEeecCCceEEEEe-------cccCCC
Confidence             356788999999999999987654433221111 111122 677777    788888866444432       234455


Q ss_pred             eeEEEecCCCCcEEEeecCCc
Q 008058          341 SFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       341 ~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      .......|...|.+++|-|--
T Consensus       285 Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  285 PVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CceEeeecccceeEEEeeecc
Confidence            566778899999999998875

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=8.4e-18  Score=157.39  Aligned_cols=205  Identities=14%  Similarity=0.164  Sum_probs=158.4

Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE--------------------EEecCCCCCCEEEEEEccC
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK--------------------WRLSDCHPGGVSAISFATH  128 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--------------------~~~~~~h~~~V~~l~~~~~  128 (579)
                      -|++|.....+  ....++++|+|+.+..|.|||+.--..+                    .....+|+..|.++.|+.+
T Consensus       177 LC~ewld~~~~--~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  177 LCIEWLDHGSK--SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             hhhhhhhcCCC--CCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            57788765111  1112889999999999999998621100                    0012368889999999875


Q ss_pred             C-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeee-EEeecCCCCEE
Q 008058          129 G-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVR  203 (579)
Q Consensus       129 ~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~-~~~~~h~~~v~  203 (579)
                      - +.|++||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..+|++|+  +++.+.|.+..... ..++ ..+.|-
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VE  333 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVE  333 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceE
Confidence            4 45899999999999999999999999999999999999995 56778888  99999999953222 2222 457899


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      .++|.|.....+.++.+||+|+-+|++...    .+++++..|...+++++++.    ....++++++.|+.+++|++..
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd~~ISgl~~n~----~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHDDEISGLSVNI----QTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEeccCCcceEEecC----CCCcceeeccccceEEEEeecC
Confidence            999999877655556689999999999875    26788888888888888873    3557899999999999998754


Q ss_pred             c
Q 008058          284 I  284 (579)
Q Consensus       284 ~  284 (579)
                      .
T Consensus       406 ~  406 (463)
T KOG0270|consen  406 D  406 (463)
T ss_pred             C
Confidence            3

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.6e-18  Score=154.70  Aligned_cols=279  Identities=11%  Similarity=0.115  Sum_probs=185.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceee--EeecCC-C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLG--KFRAST-K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~-~  160 (579)
                      .+.++++..+|.|++||..+++.+..+ +++...++.+.|..  ....+.+|+.||+|++||++......  .+..+. .
T Consensus        40 e~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~  118 (376)
T KOG1188|consen   40 ETAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT  118 (376)
T ss_pred             ceeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence            467999999999999999999888666 67888999999977  45679999999999999999765433  345555 4


Q ss_pred             CeeEEEEccCCCEEEEEC------CeEEEEECCCCee-eEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          161 GISCMAVSSDGKMLATAA------GQLKTFNCSDHKK-MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~-~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +..|++.+-.++++++|.      -.+.+||++..+. +..+ ..|...|+++.|+|...-++.+|+-||.|.+||+...
T Consensus       119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            778888877888898887      3799999998765 5554 5799999999999976644444457999999999876


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee-------e---ccc
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS-------S---EDV  302 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~---~~~  302 (579)
                      ....  .....-.....+..+.|.    .+.-+.|.+-+..++..+|+++.+..............       +   .+.
T Consensus       199 ~EeD--aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~  272 (376)
T KOG1188|consen  199 NEED--ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE  272 (376)
T ss_pred             cchh--hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence            4321  112222334445555554    13445799999999999999998875433322211000       0   000


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeC---CCCCceeEEEec-CCCCcEEEeecCCcceeeccccceeccccee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG---LLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      .++... .. ..+++...+     .+.++..-.   .......-.+.+ |..-|.++.|...+.++ .||++|+.+..|.
T Consensus       273 ~~~~~~-~~-~~l~g~~~n-----~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l-~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  273 HSPGDK-DT-CALAGTDSN-----KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL-YTGGEDGLLQAWK  344 (376)
T ss_pred             ccCCCc-ce-EEEeccccC-----ceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee-eccCCCceEEEEe
Confidence            111111 01 111111111     222222111   111122223444 66568888898899999 9999999999998


Q ss_pred             e
Q 008058          379 V  379 (579)
Q Consensus       379 ~  379 (579)
                      .
T Consensus       345 ~  345 (376)
T KOG1188|consen  345 V  345 (376)
T ss_pred             c
Confidence            6

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=3.6e-18  Score=153.85  Aligned_cols=238  Identities=12%  Similarity=0.171  Sum_probs=179.6

Q ss_pred             eEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            9 ILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 ~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      ..|+|+-|    ..++|.|+.-|.|+|.|+.++++...+.+|...++.+.+.|.                          
T Consensus        93 ytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~--------------------------  146 (385)
T KOG1034|consen   93 YTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD--------------------------  146 (385)
T ss_pred             EEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCC--------------------------
Confidence            34555543    248999999999999999999999999999999988877766                          


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee---------
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG---------  153 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------  153 (579)
                      ..+++++++.|..|++|++++..++..+  ..+|.+.|.++.|+++|.+|++|+.|.++++|++...+...         
T Consensus       147 ~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  147 RPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             CCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            2678999999999999999999988655  36899999999999999999999999999999997321100         


Q ss_pred             -------------------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-CCCe-------------eeEEeecC
Q 008058          154 -------------------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-SDHK-------------KMQKFSGH  198 (579)
Q Consensus       154 -------------------~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~-~~~~-------------~~~~~~~h  198 (579)
                                         +-..|...|-|+.|-  |+++++-+  +.|..|.. +-.+             .+.++.-.
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~  304 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP  304 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence                               112255566666665  57888766  89999976 1111             13334444


Q ss_pred             CCCEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058          199 PGAVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (579)
Q Consensus       199 ~~~v~~l~~--~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  276 (579)
                      ...|.-+.|  .|-++.|+.+. ..|.|.+||++...... ............+.-.+|+     .||..|+..++|++|
T Consensus       305 ~c~iWfirf~~d~~~~~la~gn-q~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS-----~dgs~lv~vcdd~~V  377 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGN-QSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFS-----RDGSILVLVCDDGTV  377 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhcc-CCCcEEEEECCCCCCcc-CceEEeccccceeeeeeec-----ccCcEEEEEeCCCcE
Confidence            455666655  56677888776 79999999999876541 1222333345566777777     899999999999999


Q ss_pred             EEEEC
Q 008058          277 YIWYG  281 (579)
Q Consensus       277 ~iwd~  281 (579)
                      .-||.
T Consensus       378 wrwdr  382 (385)
T KOG1034|consen  378 WRWDR  382 (385)
T ss_pred             EEEEe
Confidence            99984

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=1.9e-17  Score=146.61  Aligned_cols=259  Identities=14%  Similarity=0.115  Sum_probs=182.8

Q ss_pred             CcEEEEEECC-------CeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008058           86 SSLLVLGTGG-------GDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  149 (579)
                      .++|+++..+       ..+.||.+...         +++..+...+-+.|.|+.|.|++..+++-. |..|.+|++..+
T Consensus        76 ~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~es  154 (370)
T KOG1007|consen   76 QRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDES  154 (370)
T ss_pred             CceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccC
Confidence            5566666653       12789998653         233444445667999999999999988875 888999999877


Q ss_pred             ce-eeEeec-----CCCCeeEEEEcc--CCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEec
Q 008058          150 SL-LGKFRA-----STKGISCMAVSS--DGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       150 ~~-~~~~~~-----~~~~v~~l~~~p--~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      .. +..+..     +....++-+|+|  +|+.+++.+ +++..||+++.+....+ ..|...|..+.|+|+.+++++++.
T Consensus       155 s~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g  234 (370)
T KOG1007|consen  155 SKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG  234 (370)
T ss_pred             cchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence            65 333322     344677889998  899999888 99999999988776555 478889999999999886655555


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      +||.|++||.+..+.    ++..+..+...+.++.|.+    .-.+.|++|+.|..|.+|.......-..+.......- 
T Consensus       235 DdgyvriWD~R~tk~----pv~el~~HsHWvW~VRfn~----~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese-  305 (370)
T KOG1007|consen  235 DDGYVRIWDTRKTKF----PVQELPGHSHWVWAVRFNP----EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE-  305 (370)
T ss_pred             CCccEEEEeccCCCc----cccccCCCceEEEEEEecC----ccceEEEecCCCceeEEEecccccccccccccccccc-
Confidence            899999999998753    4677778888888888872    2457889999999999998654322111110000000 


Q ss_pred             cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                          .++..         +... .      -     -.....++++..|+..|.+++||.-..++++|-|.||.+.+-++
T Consensus       306 ----~e~~d---------seer-~------k-----pL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  306 ----SEDED---------SEER-V------K-----PLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             ----Ccchh---------hHHh-c------c-----cccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence                00000         0000 0      0     01123455777899999999999999999899999999888766

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.3e-19  Score=184.26  Aligned_cols=286  Identities=15%  Similarity=0.178  Sum_probs=196.5

Q ss_pred             EEEEccCCC-EEEEEeC----------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058           10 LTSFSPALD-YFAICSG----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus        10 ~~~fs~dg~-~las~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ..+|||++. ++|+|..          +.++.||.+.-......++..             ..-..+..+..++|.+...
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~-------------~s~~s~~rF~kL~W~~~g~   77 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV-------------GSLQSSNRFNKLAWGSYGS   77 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc-------------ccccccccceeeeecccCC
Confidence            459999997 7776642          345555544322111111100             0122245677899987653


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccC---Ce---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCce
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSA---GQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~---~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~  151 (579)
                      +.     ..+|+.|..||.|.+||...   +.   .+.+ ...|.+.|.++.|++... .+++|+.||.|.|||+..-+.
T Consensus        78 ~~-----~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t  151 (1049)
T KOG0307|consen   78 HS-----HGLIAGGLEDGNIVLYDPASIIANASEEVLAT-KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET  151 (1049)
T ss_pred             Cc-----cceeeccccCCceEEecchhhccCcchHHHhh-hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence            31     35789999999999999876   22   2223 356999999999999655 899999999999999986554


Q ss_pred             eeEee--cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCC-EEEEEecCCC-
Q 008058          152 LGKFR--ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGK-YVLSSAVGER-  222 (579)
Q Consensus       152 ~~~~~--~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~-~l~s~s~~d~-  222 (579)
                      -.+..  .....|.+++|+.. ..+|++++  |.+.|||++..+.+-.+..|.+  .+..+.|+|+.. .+++++.+|+ 
T Consensus       152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~  231 (1049)
T KOG0307|consen  152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA  231 (1049)
T ss_pred             CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC
Confidence            44432  13458999999975 45677776  8999999999988888876654  477899999864 4555553444 


Q ss_pred             -eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecc
Q 008058          223 -YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSED  301 (579)
Q Consensus       223 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  301 (579)
                       .|.+||++.....    +..+.+|..-+-.+.|+.    .|..++++++.|++|.+|+.++++.+..+.. ...++...
T Consensus       232 PviqlWDlR~assP----~k~~~~H~~GilslsWc~----~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv  302 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSP----LKILEGHQRGILSLSWCP----QDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDV  302 (1049)
T ss_pred             ceeEeecccccCCc----hhhhcccccceeeeccCC----CCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeee
Confidence             6999999876532    234445555555566651    4559999999999999999999999988765 33334333


Q ss_pred             cCcccccccchhhhhccccceecCC
Q 008058          302 VNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      .|++....   .+++++++|.+.++
T Consensus       303 ~w~pr~P~---~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  303 QWCPRNPS---VMAAASFDGKISIY  324 (1049)
T ss_pred             eecCCCcc---hhhhheeccceeee
Confidence            35554332   78889998865543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=4.4e-18  Score=150.93  Aligned_cols=277  Identities=12%  Similarity=0.084  Sum_probs=194.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCe------------EE--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQ------------LK--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~------------~~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~  150 (579)
                      ++++++|..||.|.+||++...            ++  ..-..+|.-.|.++.|-| |...|.+++-|.++++||..+-+
T Consensus        56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ  135 (397)
T KOG4283|consen   56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ  135 (397)
T ss_pred             ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence            8899999999999999997532            11  111246778899999999 66678889999999999999988


Q ss_pred             eeeEeecCCCCeeEEEEccCC--C-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          151 LLGKFRASTKGISCMAVSSDG--K-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g--~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      ....|+ -.+.|++-+++|-.  . ++|+|.  -.|++-|+.+|..-.++.||.+.|.++.|+|...+++.+++.||.|+
T Consensus       136 ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir  214 (397)
T KOG4283|consen  136 EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR  214 (397)
T ss_pred             eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence            888887 45678888999843  2 455555  58999999999999999999999999999999998888777999999


Q ss_pred             EEEcCCCcc----------ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          226 LWRTDGVKK----------QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       226 vwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      +||++....          .....+.+-..+...+..++|+     .++.++++.+.|..+++|+..+|+......+...
T Consensus       215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t-----Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~  289 (397)
T KOG4283|consen  215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT-----SDARYLASCGTDDRIRVWNMESGRNTLREFGPII  289 (397)
T ss_pred             EEEeecccceeEEeecccCccCccccccccccceeeeeeec-----ccchhhhhccCccceEEeecccCccccccccccc
Confidence            999986420          0000111122334455667776     8999999999999999999988864322111110


Q ss_pred             EeeecccCcccccccchh-hhhccccce-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008058          296 LSSSEDVNSKSQKSATAA-IFAAKLQDI-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~  373 (579)
                      .         ..+..... +-++..+-- ...+++.+.+. ...-+.....+.+|...+.+.++.||=+.. .+++.|+.
T Consensus       290 ~---------n~~~~~~~~~~~~~s~vfv~~p~~~~lall-~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~-~tg~~d~n  358 (397)
T KOG4283|consen  290 H---------NQTTSFAVHIQSMDSDVFVLFPNDGSLALL-NLLEGSFVRRLSTHLKRINCAAYRPDFEQC-FTGDMNGN  358 (397)
T ss_pred             c---------cccccceEEEeecccceEEEEecCCeEEEE-EccCceEEEeeecccceeeEEeecCchhhh-hccccCCc
Confidence            0         00000000 111111111 11112222221 122234556777898889999999999998 99999999


Q ss_pred             ccceee
Q 008058          374 KRGRYV  379 (579)
Q Consensus       374 ~~~w~~  379 (579)
                      +..|..
T Consensus       359 i~~w~p  364 (397)
T KOG4283|consen  359 IYMWSP  364 (397)
T ss_pred             cccccc
Confidence            999965

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=7.3e-18  Score=151.15  Aligned_cols=189  Identities=22%  Similarity=0.319  Sum_probs=150.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +.+-...++.|+++++.|..|.+|+.+ |+.+..+............+|+                           +++
T Consensus       191 i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~---------------------------GRF  242 (420)
T KOG2096|consen  191 INIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD---------------------------GRF  242 (420)
T ss_pred             EEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC---------------------------CcE
Confidence            555667788999999999999999998 8888887655544444444444                           999


Q ss_pred             EEEEECCCeEEEEEccC---CeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----C---ceee
Q 008058           89 LVLGTGGGDVLALAVSA---GQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT----G---SLLG  153 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~---~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~----~---~~~~  153 (579)
                      ++++.-.-+|++|.+--   |..     +.++ +||.+.|..++|+++...+++.+.||+.++||..-    +   +.++
T Consensus       243 ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk  321 (420)
T KOG2096|consen  243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK  321 (420)
T ss_pred             EEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence            99999999999999842   221     2233 79999999999999999999999999999999752    1   1222


Q ss_pred             Ee----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          154 KF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       154 ~~----~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      +.    ....+....++++|+|+.|+.+. ..+++|..++++....+ ..|...|++|.|+++|++++++|  |+.+++.
T Consensus       322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG--dr~vrv~  399 (420)
T KOG2096|consen  322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG--DRYVRVI  399 (420)
T ss_pred             cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--ceeeeee
Confidence            22    12233445899999999999998 69999999998877666 46899999999999999999986  8999998


Q ss_pred             E
Q 008058          228 R  228 (579)
Q Consensus       228 d  228 (579)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            6

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=4.3e-19  Score=184.29  Aligned_cols=241  Identities=15%  Similarity=0.138  Sum_probs=183.2

Q ss_pred             EEEEccCCCE----EEEEeCCCcEEEEECCC---Ce---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058           10 LTSFSPALDY----FAICSGDARIKIWDTLK---GQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        10 ~~~fs~dg~~----las~s~dg~i~vwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|.+.|..    ||.|..||.|.+||...   +.   .+..+..|.+.+..+-|++.                  .  
T Consensus        69 kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~------------------q--  128 (1049)
T KOG0307|consen   69 KLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF------------------Q--  128 (1049)
T ss_pred             eeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc------------------C--
Confidence            3489888765    88888999999999865   21   34445555555554444433                  2  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                            ++++++|..+|+|.|||+..-+..... .....+.|.+++|+..-. .|++++.+|.+.|||++..+.+-.+..
T Consensus       129 ------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~  202 (1049)
T KOG0307|consen  129 ------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD  202 (1049)
T ss_pred             ------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc
Confidence                  779999999999999999876554333 222457899999988544 488889999999999998888877776


Q ss_pred             CCC--CeeEEEEccCC-CEEEEEC-----CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008058          158 STK--GISCMAVSSDG-KMLATAA-----GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW  227 (579)
Q Consensus       158 ~~~--~v~~l~~~p~g-~~l~~~~-----g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vw  227 (579)
                      +.+  .+..++|+|+. ..+++++     -.|.+||++.. .+++++.+|...|.++.|++.+ +++++++ .|+.|.+|
T Consensus       203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg-kD~~ii~w  281 (1049)
T KOG0307|consen  203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG-KDNRIICW  281 (1049)
T ss_pred             CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc-CCCCeeEe
Confidence            655  57899999975 3455554     38999999864 5678889999999999999877 6777777 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      +.++++.     +..+......+.-+.|++    .+...+++++.||.|.||.+.++..
T Consensus       282 N~~tgEv-----l~~~p~~~nW~fdv~w~p----r~P~~~A~asfdgkI~I~sl~~~~~  331 (1049)
T KOG0307|consen  282 NPNTGEV-----LGELPAQGNWCFDVQWCP----RNPSVMAAASFDGKISIYSLQGTDT  331 (1049)
T ss_pred             cCCCceE-----eeecCCCCcceeeeeecC----CCcchhhhheeccceeeeeeecCCc
Confidence            9999873     345555556666666762    3456888899999999999877653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=4.7e-18  Score=160.79  Aligned_cols=214  Identities=14%  Similarity=0.161  Sum_probs=169.7

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      |++......|+++|+..++|+|||++...+...+++|...+..+.|+..                           ..+|
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~---------------------------Deyi  136 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT---------------------------DEYI  136 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC---------------------------ccee
Confidence            3344445589999999999999999977777777877766666555544                           7889


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      ++++..|+|.|..+.++.....+..+....|.-+.|+|..++ |.+++.+|.|.+||+....++.. .+.|..+...|+|
T Consensus       137 Asvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  137 ASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF  216 (673)
T ss_pred             EEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee
Confidence            999999999999999988765554444456779999998776 67789999999999987777665 4568899999999


Q ss_pred             ccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +|.... |++.+  ..|.+||.+..+....+. ...|.+.++|.++|.+|+++. ..|.|..||++..+..    +....
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~~k~P----v~v~s  290 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRSTKAP----VAVRS  290 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeec-CCceEEEEecccCCCC----ceEee
Confidence            997654 45555  799999999877776665 567889999999999999887 5899999999987643    44455


Q ss_pred             cCceeeEeEEec
Q 008058          245 HPAVFMDCRCID  256 (579)
Q Consensus       245 ~~~~~~~~~~~~  256 (579)
                      .+...+.+++|-
T Consensus       291 ah~~sVt~vafq  302 (673)
T KOG4378|consen  291 AHDASVTRVAFQ  302 (673)
T ss_pred             ecccceeEEEee
Confidence            556667888886

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=1e-17  Score=154.39  Aligned_cols=208  Identities=17%  Similarity=0.267  Sum_probs=162.6

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +++||  +.++|+| +.+.+|+||.|.+|.||++-.+.....+.   .++..       ..|| ...+..+.|+|.-   
T Consensus        80 Ht~~v--LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---epvv~-------L~gH-~rrVg~V~wHPtA---  143 (472)
T KOG0303|consen   80 HTAPV--LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---EPVVE-------LYGH-QRRVGLVQWHPTA---  143 (472)
T ss_pred             ccccc--cccccCccCCceeecCCCCceEEEEECCCcccccCcc---cceEE-------Eeec-ceeEEEEeecccc---
Confidence            46888  6679999 45689999999999999987655433222   11110       1233 3356678888875   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           .+.|++++.|..|.+||+.+|+...++.  |.+.|+++.|+.||.+|++++.|..|++||.++++.+..-.+|.+
T Consensus       144 -----~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG  216 (472)
T KOG0303|consen  144 -----PNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG  216 (472)
T ss_pred             -----hhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC
Confidence                 6789999999999999999999876763  999999999999999999999999999999999999988878877


Q ss_pred             -CeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          161 -GISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                       ....+.|-.+|.++.+|-     .++-+||..+-+.   ..++. ..+.|.---|.+|...+..+|-+|+.|+.|.+..
T Consensus       217 ~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  217 AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence             456667888999665554     5899998765432   33343 3455666678899999988998999999999887


Q ss_pred             Cc
Q 008058          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       296 d~  297 (472)
T KOG0303|consen  296 EP  297 (472)
T ss_pred             CC
Confidence            65

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.1e-17  Score=150.06  Aligned_cols=311  Identities=12%  Similarity=0.086  Sum_probs=205.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+-|+++  .||.++++||+|+.|..+++|+++..-...+-+...           +...|....+.|++|...      
T Consensus        56 ~GCiNAl--qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------~~~~~H~SNIF~L~F~~~------  116 (609)
T KOG4227|consen   56 TGCINAL--QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------VMEHPHRSNIFSLEFDLE------  116 (609)
T ss_pred             cccccee--eeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------eccCccccceEEEEEccC------
Confidence            4667666  999999999999999999999986432111100000           001122245566666654      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeE--eecC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGK--FRAS  158 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~--~~~~  158 (579)
                         +..+++|..+++|...|+.+.+.+..... ...+.|+.+..+|-.+.|++.+.+|.|.+||.+... .+..  ....
T Consensus       117 ---N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  117 ---NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             ---CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence               67799999999999999999988755531 223589999999999999999999999999998654 2222  2223


Q ss_pred             CCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCee-eEE------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          159 TKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKK-MQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~-~~~------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ......+.|+|.... |++.+  +-+-+||.+..+. +..      ++.......++.|+|+|..|++.- ....-.+||
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D  272 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFD  272 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEee
Confidence            447788999997664 44555  7899999986532 221      221122346789999999988864 344556788


Q ss_pred             cCCCccccceeEEeeecCc------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058          229 TDGVKKQSASCVLAMEHPA------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      +.+..+    .++...|..      ..+..++|.      +...+++|+.+-.|++|.+.....-..+.           
T Consensus       273 ~~S~R~----~V~k~D~N~~GY~N~~T~KS~~F~------~D~~v~tGSD~~~i~~WklP~~~ds~G~~-----------  331 (609)
T KOG4227|consen  273 FISQRC----FVLKSDHNPNGYCNIKTIKSMTFI------DDYTVATGSDHWGIHIWKLPRANDSYGFT-----------  331 (609)
T ss_pred             eecccc----eeEeccCCCCcceeeeeeeeeeee------cceeeeccCcccceEEEecCCCccccCcc-----------
Confidence            877543    345555443      223445553      55679999999999999865332211110           


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                        ..++          ....    -.     ....+...+-.+.||..-+.++.|+|...+| +|.+-.+.+|+|.-
T Consensus       332 --~IG~----------~~~~----~~-----~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l-~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  332 --QIGH----------DEEE----MP-----SEIFIEKELTVLRGHRSVPNQVRFSQHNNLL-VSSGVENSFKLWSD  386 (609)
T ss_pred             --ccCc----------chhh----Cc-----hhheecceeEEEecccccccceeecCCcceE-eccchhhheecccc
Confidence              0000          0000    00     0001122344677999999999999999999 88888999999963

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.77  E-value=1.1e-17  Score=153.30  Aligned_cols=205  Identities=13%  Similarity=0.083  Sum_probs=153.5

Q ss_pred             CCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCC----------------CceeeEeecCCCCeeEEEEccCC-CEEE
Q 008058          115 CHPGGVSAISFATHGS--CIYSAGADGMVCEIDPLT----------------GSLLGKFRASTKGISCMAVSSDG-KMLA  175 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~p~g-~~l~  175 (579)
                      +|.+.++-+.-.+-|+  +.++-+..|.|++||+..                .+++.++.+|...=+.++|||-- ..++
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            5667777777776543  455557899999999852                35678889999888999999932 2466


Q ss_pred             EEC--CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceee
Q 008058          176 TAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFM  250 (579)
Q Consensus       176 ~~~--g~i~vwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  250 (579)
                      +|.  +.|++|...++.-.   ..|.+|+..|-.+.|+|..+-++++++-|++|+|||++.+....  ++.+- .+...+
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~k-Ah~sDV  305 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTK-AHNSDV  305 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEee-ccCCce
Confidence            776  89999999887542   34678999999999999766544444479999999999986543  55553 444477


Q ss_pred             EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEE
Q 008058          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHT  330 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  330 (579)
                      +++.|+     ..-.+||+|+.||+++|||+++.+.-                    +                      
T Consensus       306 NVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~--------------------~----------------------  338 (440)
T KOG0302|consen  306 NVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG--------------------Q----------------------  338 (440)
T ss_pred             eeEEcc-----CCcceeeecCCCceEEEEEhhhccCC--------------------C----------------------
Confidence            888887     45569999999999999998654320                    0                      


Q ss_pred             EEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          331 FVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       331 ~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                ....+..|..+|+++.|+|...-..+.+|.|+.+.+|++
T Consensus       339 ----------pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  339 ----------PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             ----------cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence                      011566899999999999865433366667999999998

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.77  E-value=3.5e-17  Score=159.61  Aligned_cols=245  Identities=16%  Similarity=0.184  Sum_probs=172.4

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE--eccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      -..|  +.+.|-|....|++++.|.++++||++++++...  +.+|...+.+.+|.+.                      
T Consensus       100 ~nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~----------------------  155 (720)
T KOG0321|consen  100 KNAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT----------------------  155 (720)
T ss_pred             ccee--EeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC----------------------
Confidence            3457  5569999556899999999999999999988766  7888888877777765                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEE------EEe--------------------cCCCCCCEEE---EEEccCCCE
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRL--------------------SDCHPGGVSA---ISFATHGSC  131 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~--------------------~~~h~~~V~~---l~~~~~~~~  131 (579)
                          +...+++|+.||.|.|||+.-...-      ..+                    ..+|...|.+   +.+..|...
T Consensus       156 ----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t  231 (720)
T KOG0321|consen  156 ----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST  231 (720)
T ss_pred             ----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence                2678999999999999999743200      000                    1133444555   555678888


Q ss_pred             EEEEeC-CCcEEEEeCCCCceee--------EeecC---CCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEe
Q 008058          132 IYSAGA-DGMVCEIDPLTGSLLG--------KFRAS---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKF  195 (579)
Q Consensus       132 l~s~~~-dg~v~iwd~~~~~~~~--------~~~~~---~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~  195 (579)
                      |++++. |+.|++||++......        .+..|   ...+.++..+..|.++.+.+  +.|+.|++.+-  .++..+
T Consensus       232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~  311 (720)
T KOG0321|consen  232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF  311 (720)
T ss_pred             eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence            999887 9999999998654322        22223   23678888888888776655  99999999864  334445


Q ss_pred             ecCCCCEE--EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058          196 SGHPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       196 ~~h~~~v~--~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      .++...-.  .-..+|++.++++++ .|...++|.+...+..   ... +..+...+.++.|.+.   +. .-++++++|
T Consensus       312 sg~~~~sf~vks~lSpd~~~l~SgS-sd~~ayiw~vs~~e~~---~~~-l~Ght~eVt~V~w~pS---~~-t~v~TcSdD  382 (720)
T KOG0321|consen  312 SGKLNSSFYVKSELSPDDCSLLSGS-SDEQAYIWVVSSPEAP---PAL-LLGHTREVTTVRWLPS---AT-TPVATCSDD  382 (720)
T ss_pred             cCcccceeeeeeecCCCCceEeccC-CCcceeeeeecCccCC---hhh-hhCcceEEEEEeeccc---cC-CCceeeccC
Confidence            54432211  124579999999998 6999999999887644   222 3344455566666632   23 346777999


Q ss_pred             CeEEEEECCCc
Q 008058          274 GVCYIWYGQNI  284 (579)
Q Consensus       274 g~i~iwd~~~~  284 (579)
                      .++++|++.++
T Consensus       383 ~~~kiW~l~~~  393 (720)
T KOG0321|consen  383 FRVKIWRLSNG  393 (720)
T ss_pred             cceEEEeccCc
Confidence            99999998654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=4e-17  Score=151.20  Aligned_cols=253  Identities=15%  Similarity=0.140  Sum_probs=161.3

Q ss_pred             cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--------C--------CceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--------T--------GSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus       113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      +..|...|+++.|+|+|..+++|+.+|.|.+|-..        +        ....+.+.+|...|..++|+|++.++++
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s  140 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS  140 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence            35799999999999999999999999999999755        2        1234557789899999999999999999


Q ss_pred             EC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---------------e
Q 008058          177 AA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---------------C  239 (579)
Q Consensus       177 ~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~---------------~  239 (579)
                      ++  +.+++||+..|+....+.+|...|..++|.|-++++++-+ .|+..+.+++.........               .
T Consensus       141 ~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~  219 (434)
T KOG1009|consen  141 GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK  219 (434)
T ss_pred             eeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence            98  8999999999999999999999999999999999999987 5887777776554322100               0


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEc----CCe-----EEEEECCCce-eeccc---CCceEEeeecccC---
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----TGV-----CYIWYGQNIE-ELRNT---KATKILSSSEDVN---  303 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----dg~-----i~iwd~~~~~-~~~~~---~~~~~~~~~~~~~---  303 (579)
                      ...+-|.....  .+|....++|+|..+++...    +|.     .++|+-...+ +....   +.....+.+..++   
T Consensus       220 s~rLfhDeTlk--sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~el  297 (434)
T KOG1009|consen  220 STRLFHDETLK--SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYEL  297 (434)
T ss_pred             eeeeeecCchh--hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEe
Confidence            11111111110  12222334499999988743    333     3556543221 11111   1111111111100   


Q ss_pred             cccccc------cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008058          304 SKSQKS------ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (579)
Q Consensus       304 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~  376 (579)
                      .+....      +-..+++-..       ...+++.++....+.+-....|...++.++||+||..| +-.|.|+-.-+
T Consensus       298 rp~~~~~~~~~lpyrlvfaiAt-------~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l-~vSS~DGyCS~  368 (434)
T KOG1009|consen  298 RPLSSEKFLFVLPYRLVFAIAT-------KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVL-LVSSTDGFCSL  368 (434)
T ss_pred             ccccccccccccccceEEEEee-------cceEEEeccccccceEEEeeeeeeeecceeecCCCcEE-EEeccCCceEE
Confidence            000000      0001111111       11233334444455555555799999999999999999 66666775433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1.3e-16  Score=147.15  Aligned_cols=207  Identities=17%  Similarity=0.227  Sum_probs=161.8

Q ss_pred             ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCCCCCEEEEEEccC-CCEE
Q 008058           60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCHPGGVSAISFATH-GSCI  132 (579)
Q Consensus        60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h~~~V~~l~~~~~-~~~l  132 (579)
                      .+||.+ .+..+.|.|.+        ...|++|+.|.+|.||++..+...      ...+.+|...|--+.|+|. .+.|
T Consensus        77 v~GHt~-~vLDi~w~Pfn--------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL  147 (472)
T KOG0303|consen   77 VCGHTA-PVLDIDWCPFN--------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL  147 (472)
T ss_pred             ccCccc-cccccccCccC--------CceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhH
Confidence            456654 55678899987        788999999999999999865432      2234689999999999995 4568


Q ss_pred             EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEec
Q 008058          133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSD  209 (579)
Q Consensus       133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~  209 (579)
                      ++++.|.+|.+||+.+|+.+-++. |.+.|++++|+.||.++++++  ..|+|||.++++.+..-.+|.+. -..+.|-.
T Consensus       148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            999999999999999999988888 999999999999999999998  89999999999999888888753 44567888


Q ss_pred             CCCEEEEEec---CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCce
Q 008058          210 NGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       210 ~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~  285 (579)
                      +|. ++++|.   .++.+-+||...-...  .....++.... +-.-+++     +|...|..++ .|+.|+.|.+.+-.
T Consensus       227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elDtSnG-vl~PFyD-----~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  227 SGK-IFTTGFSRMSERQIALWDPNNLEEP--IALQELDTSNG-VLLPFYD-----PDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             cCc-eeeeccccccccceeccCcccccCc--ceeEEeccCCc-eEEeeec-----CCCCEEEEEecCCcceEEEEecCCC
Confidence            887 556552   3678999998776543  13334443333 3344555     7777776655 59999999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=7.6e-17  Score=157.75  Aligned_cols=272  Identities=14%  Similarity=0.182  Sum_probs=197.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ...|+++  +|-|||..|+.+.. ..+.|||...|...+.+++|...+.+++|+.+                        
T Consensus        12 ~hci~d~--afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~d------------------------   64 (1081)
T KOG1538|consen   12 EHCINDI--AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD------------------------   64 (1081)
T ss_pred             ccchhee--EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccC------------------------
Confidence            3457566  99999998877764 47999999999999999999988887777777                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         |..+++|+.|..|.+|+..-.... +  -.|++.|.|+.|+|-...+++|+... .-+|.... +.+.+.+ ....+
T Consensus        65 ---GkrFASG~aDK~VI~W~~klEG~L-k--YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~q-K~V~K~k-ss~R~  135 (1081)
T KOG1538|consen   65 ---GKRFASGSADKSVIIWTSKLEGIL-K--YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQ-KSVSKHK-SSSRI  135 (1081)
T ss_pred             ---CceeccCCCceeEEEeccccccee-e--eccCCeeeEeecCchHHHhhhcchhh-ccccChhh-hhHHhhh-hheeE
Confidence               889999999999999997654433 3  35999999999999999999997543 56888643 3333333 34578


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecCC-----CEEEEEecCCCeEEEEEcCCC
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDNG-----KYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~~-----~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .+++|..||++++.|-  |+|.+-+- +++....+   .|..++|.+++|+|..     ..+++. .+..++..+.+...
T Consensus       136 ~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~-DW~qTLSFy~LsG~  213 (1081)
T KOG1538|consen  136 ICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA-DWGQTLSFYQLSGK  213 (1081)
T ss_pred             EEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE-eccceeEEEEecce
Confidence            9999999999999997  89998864 44433333   3577899999999863     245555 48888888888764


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      ...   ....+....   .|..+.     ++|.+++.|+.|+.+++|--+ |-.+.                        
T Consensus       214 ~Ig---k~r~L~FdP---~CisYf-----~NGEy~LiGGsdk~L~~fTR~-GvrLG------------------------  257 (1081)
T KOG1538|consen  214 QIG---KDRALNFDP---CCISYF-----TNGEYILLGGSDKQLSLFTRD-GVRLG------------------------  257 (1081)
T ss_pred             eec---ccccCCCCc---hhheec-----cCCcEEEEccCCCceEEEeec-CeEEe------------------------
Confidence            322   011222222   233333     899999999999999999421 11111                        


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                     ++..-...+++++..|+|++. +-|..||++--+++.
T Consensus       258 -------------------------------Tvg~~D~WIWtV~~~PNsQ~v-~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  258 -------------------------------TVGEQDSWIWTVQAKPNSQYV-VVGCQDGTIACYNLI  293 (1081)
T ss_pred             -------------------------------eccccceeEEEEEEccCCceE-EEEEccCeeehhhhH
Confidence                                           111122368888888888888 777788888777763

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.75  E-value=1e-14  Score=149.67  Aligned_cols=323  Identities=20%  Similarity=0.285  Sum_probs=217.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ...|  ..+.|.+++..++.++.|+.+.+|+...+. ....+.....                 .....+.+.  .+.  
T Consensus        65 ~~~i--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~--  121 (466)
T COG2319          65 EDSI--TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----------------SSVSKLALS--SPD--  121 (466)
T ss_pred             cceE--EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----------------CceeeEEEE--CCC--
Confidence            3456  555999999999999999999999998876 5555543221                 111122221  111  


Q ss_pred             cccCCc-EEEEEEC-CCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec
Q 008058           82 RKLGSS-LLVLGTG-GGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        82 ~~~~~~-~l~~~~~-~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~  157 (579)
                          .. .++..+. ++.+.+|+... ......+ ..|...|.++.|+|+++.+++++. |+.+++|+...+..+..+.+
T Consensus       122 ----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         122 ----GNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             ----cceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence                33 3444344 88999999998 5554444 679999999999999998888885 99999999998889999999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      |...+.+++|+|++. .+++++  +.|++||...+..+. .+.+|.... ...|+|++.++++++ .|+.+++|+.....
T Consensus       197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~  274 (466)
T COG2319         197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS-SDGTIRLWDLRSSS  274 (466)
T ss_pred             CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec-CCCcEEEeeecCCC
Confidence            999999999999998 555534  899999999888877 688888875 448999998877666 79999999998776


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC--CceEEeeecccCcccccccc
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK--ATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  311 (579)
                      ..    ......+...+....+.     |++..+++++.|+.+.+|+..+........  .+...+.... +.++..   
T Consensus       275 ~~----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---  341 (466)
T COG2319         275 SL----LRTLSGHSSSVLSVAFS-----PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGS---  341 (466)
T ss_pred             cE----EEEEecCCccEEEEEEC-----CCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEE-ECCCCC---
Confidence            41    11223335556666776     788888889889999999988776554332  1111111111 111101   


Q ss_pred             hhhhhc-cccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecc-ccceecccceeee
Q 008058          312 AAIFAA-KLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMS-QSLLKSKRGRYVQ  380 (579)
Q Consensus       312 ~~i~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s-~s~d~~~~~w~~~  380 (579)
                       .+..+ ..++       .+.. +.............+. .+..+.+++ .... .+ ++.++.+.+|+..
T Consensus       342 -~~~~~~~~d~-------~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~  400 (466)
T COG2319         342 -LLVSGGSDDG-------TIRL-WDLRTGKPLKTLEGHS-NVLSVSFSP-DGRV-VSSGSTDGTVRLWDLS  400 (466)
T ss_pred             -EEEEeecCCC-------cEEe-eecCCCceeEEecCCc-eEEEEEECC-CCCE-EEEecCCCceEEEecc
Confidence             22222 2222       2222 2111111111222222 278888888 5433 44 6788999999874

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.9e-17  Score=158.34  Aligned_cols=242  Identities=15%  Similarity=0.148  Sum_probs=180.8

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCC--------CeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLK--------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      -||++  +|.|....|++++.||+|++|+++.        -+.+.+|.+|.+++.++++...                  
T Consensus       296 ~ir~l--~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------------  355 (577)
T KOG0642|consen  296 CIRAL--AFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------------  355 (577)
T ss_pred             hhhhh--hcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC------------------
Confidence            46666  8999999999999999999999832        2467888899888887777766                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                               +..+++|+-||+|+.|++..+         ..+...+.||++.|+.+++++....|++|+.||+|+.|+..
T Consensus       356 ---------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~  426 (577)
T KOG0642|consen  356 ---------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT  426 (577)
T ss_pred             ---------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC
Confidence                     788999999999999966421         23344557999999999999999999999999999999987


Q ss_pred             CCceeeEeecCC--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEE
Q 008058          148 TGSLLGKFRAST--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       148 ~~~~~~~~~~~~--~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~  215 (579)
                      .... .+|....  +...++++-.....+..++   +.-.+++......+..+...       ...+..+.++|.+...+
T Consensus       427 ~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~  505 (577)
T KOG0642|consen  427 EESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF  505 (577)
T ss_pred             CcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE
Confidence            6655 4444322  3446666654433333333   34444455554444444321       23467788999998888


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      ++. .|+.|+++|..+++..     .....+...+++.++.     |+|-+|++++.||.+++|.+.....+
T Consensus       506 ~~h-ed~~Ir~~dn~~~~~l-----~s~~a~~~svtslai~-----~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  506 TAH-EDRSIRFFDNKTGKIL-----HSMVAHKDSVTSLAID-----PNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ecc-cCCceecccccccccc-----hheeeccceecceeec-----CCCceEEeecCCceeehhhccchhee
Confidence            776 8999999999988744     4555666777888887     99999999999999999987654443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=2.4e-15  Score=138.09  Aligned_cols=233  Identities=14%  Similarity=0.168  Sum_probs=171.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ....|+.|...|..|+.|| -++|+................+....|+                             ..+
T Consensus         9 ~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS-----------------------------SSL   58 (391)
T KOG2110|consen    9 NFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS-----------------------------SSL   58 (391)
T ss_pred             eeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc-----------------------------cce
Confidence            3347999999999999998 4788776433211111111111111121                             455


Q ss_pred             EEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008058           89 LVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS  163 (579)
Q Consensus        89 l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~  163 (579)
                      +++.+.+.  .+++++...+..+..+.  ...+|.++.++.  +.|+.+-.+ .|+|||+++.+.++++..   +...+.
T Consensus        59 vaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~  133 (391)
T KOG2110|consen   59 VAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLC  133 (391)
T ss_pred             eEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceE
Confidence            66666543  39999999998887775  446799999964  467666544 499999999999888654   344677


Q ss_pred             EEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccce
Q 008058          164 CMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSAS  238 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~  238 (579)
                      ++++++.+.+++.-+    |.|.+||+.+-+.+..+..|.+++.+++|+++|.+|++++ +.| .|+|+.+.++++.   
T Consensus       134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS-eKGTVIRVf~v~~G~kl---  209 (391)
T KOG2110|consen  134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS-EKGTVIRVFSVPEGQKL---  209 (391)
T ss_pred             eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec-cCceEEEEEEcCCccEe---
Confidence            777777778888755    9999999999999999999999999999999999999998 455 5799999998754   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ..+.-+.....+..++|+     |++.+|++.+..++|++|.++...
T Consensus       210 ~eFRRG~~~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             eeeeCCceeeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecccc
Confidence            223323334445667777     999999999999999999987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=7.5e-16  Score=133.34  Aligned_cols=227  Identities=13%  Similarity=0.189  Sum_probs=160.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe----------EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.-+++|.++||+.|+.+|+|.+..+.+-.          .+..++.|.+++..+.|..                     
T Consensus        14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---------------------   72 (325)
T KOG0649|consen   14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---------------------   72 (325)
T ss_pred             HHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---------------------
Confidence            344789999999999999999999875321          2223344555444444432                     


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeE------EEEe-cCCCC-----CCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQL------KWRL-SDCHP-----GGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~------~~~~-~~~h~-----~~V~~l~~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                              . ++..+.||.|+-|.......      .++. ...|.     ..|+++...|..+-++.++.|+.++.||+
T Consensus        73 --------~-~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl  143 (325)
T KOG0649|consen   73 --------D-FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL  143 (325)
T ss_pred             --------h-heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe
Confidence                    2 45555669999998754321      1111 11222     35899999998888888889999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----------CCEEEEEEecCCCEE
Q 008058          147 LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----------GAVRFMTFSDNGKYV  214 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~----------~~v~~l~~~~~~~~l  214 (579)
                      ++|+..+++++|.+.|.++.--.....+++|+  |++++||.++++.+..+....          ..|.+++  -+..++
T Consensus       144 E~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWl  221 (325)
T KOG0649|consen  144 EDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWL  221 (325)
T ss_pred             cCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceE
Confidence            99999999999999999999855566777777  999999999999988774322          2244444  445688


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      +.++  ...+.+|+++..+..   +++.+..+..   .+.|       ....++++++.+.+.-|.+.
T Consensus       222 vCGg--Gp~lslwhLrsse~t---~vfpipa~v~---~v~F-------~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  222 VCGG--GPKLSLWHLRSSEST---CVFPIPARVH---LVDF-------VDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EecC--CCceeEEeccCCCce---EEEeccccee---Eeee-------ecceEEEeccccceeeeeec
Confidence            7664  578999999998754   6666554433   2333       23678888888889888654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=1.5e-14  Score=148.51  Aligned_cols=320  Identities=21%  Similarity=0.317  Sum_probs=215.9

Q ss_pred             cccceEEEEccCCC-EEEEEeC-CCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSPALD-YFAICSG-DARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~dg~-~las~s~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++..+... ++++. +++..+. |+.+.+|+... ......+..|...+..+.|++.                       
T Consensus       111 ~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------  166 (466)
T COG2319         111 SVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPD-----------------------  166 (466)
T ss_pred             ceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCC-----------------------
Confidence            45455444 88888 5555455 99999999987 6777777766665555555544                       


Q ss_pred             cccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceee-EeecC
Q 008058           82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLG-KFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~  158 (579)
                          +..++.++. ++.+++|+...+..+..+ .+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+..|
T Consensus       167 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~  241 (466)
T COG2319         167 ----GKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH  241 (466)
T ss_pred             ----CCEEEecCCCCCceEEEEcCCCceEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC
Confidence                556777775 999999999987776555 56999999999999998 55665899999999998888887 68888


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .... ...|+|++..+++++  +.+++|+...... +..+.+|...+.++.|.|++..+++++ .|+.+.+|+.......
T Consensus       242 ~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~  319 (466)
T COG2319         242 SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS-SDGTVRLWDLETGKLL  319 (466)
T ss_pred             Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee-CCCcEEEEEcCCCceE
Confidence            7765 448999998888776  8999999987654 445568899999999999888888866 6788999988876543


Q ss_pred             cceeEEe-eecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058          236 SASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       236 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      .   ... ..+.. .+..+.+.     +++..++.+ ..|+.+.+|+............... ..... +.+. .    .
T Consensus       320 ~---~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~-~----~  383 (466)
T COG2319         320 S---SLTLKGHEG-PVSSLSFS-----PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVS-FSPD-G----R  383 (466)
T ss_pred             E---EeeecccCC-ceEEEEEC-----CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEE-ECCC-C----C
Confidence            1   111 12333 34444443     444555555 6789999999887762222221111 11111 1111 1    1


Q ss_pred             hhh-ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          314 IFA-AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       314 i~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +.. +..++.+..++        ............+...+....+++++..+ ++++.+.+++.|++.
T Consensus       384 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  442 (466)
T COG2319         384 VVSSGSTDGTVRLWD--------LSTGSLLRNLDGHTSRVTSLDFSPDGKSL-ASGSSDNTIRLWDLK  442 (466)
T ss_pred             EEEEecCCCceEEEe--------cccCeeeeeccCCCCcEEEEEECCCCcEE-EEecCCCcEEEEecc
Confidence            111 22222222211        11111121222221578899999999999 888889999999885

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=5.6e-15  Score=146.41  Aligned_cols=188  Identities=18%  Similarity=0.257  Sum_probs=124.5

Q ss_pred             CcEEEEEE-CCCeEEEEEcc-CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cc---eeeEee
Q 008058           86 SSLLVLGT-GGGDVLALAVS-AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GS---LLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~-~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~---~~~~~~  156 (579)
                      +++|++++ .++.|.+|++. ++..  ....  ...+....++|+|+|+++++++ .++.|.+||+.+ +.   .+..+.
T Consensus        46 ~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         46 KRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             CCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence            66676665 46779999997 3433  2222  1334567899999999988876 488999999864 32   223232


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE-------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~-------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                       +.....+++++|+|+++++++   +.|.+||+.+...+.       .... ......+.|+|+|++++++...++.|.+
T Consensus       124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v  201 (330)
T PRK11028        124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDV  201 (330)
T ss_pred             -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEE
Confidence             223567889999999998766   799999998633221       1111 2345789999999999888756899999


Q ss_pred             EEcCCCccccceeEEeeec-C-----ceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCC
Q 008058          227 WRTDGVKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~  283 (579)
                      |++...... ...+..... +     ......+.++     |+|++++++.. ++.|.+|+++.
T Consensus       202 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~i~~~-----pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        202 WQLKDPHGE-IECVQTLDMMPADFSDTRWAADIHIT-----PDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEEeCCCCC-EEEEEEEecCCCcCCCCccceeEEEC-----CCCCEEEEecCCCCeEEEEEEeC
Confidence            999743111 112222211 1     1111234555     99999999865 78999998754

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.9e-16  Score=143.65  Aligned_cols=190  Identities=12%  Similarity=0.201  Sum_probs=145.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      +.+|++-..|.|++||..+|+.+..|+++....+.+.|...                  +       ++..+.+|+.||.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~------------------d-------s~h~v~s~ssDG~   95 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISC------------------D-------SPHGVISCSSDGT   95 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecC------------------C-------CCCeeEEeccCCe
Confidence            45888888999999999999999999988887776666543                  1       1677999999999


Q ss_pred             EEEEEccCCeEEEEec-CCCC-CCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCce-eeE-eecCCCCeeEEEEcc
Q 008058           98 VLALAVSAGQLKWRLS-DCHP-GGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSL-LGK-FRASTKGISCMAVSS  169 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~-~~h~-~~V~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~-~~~-~~~~~~~v~~l~~~p  169 (579)
                      |++||++......++. .+|. .+-.+++.+..++.+++|.    .|-.|.+||++..+. ++. ...|.+.|+++.|+|
T Consensus        96 Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen   96 VRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             EEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence            9999999876554443 3344 4667777776777777774    466899999998765 444 567899999999999


Q ss_pred             C-CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCc
Q 008058          170 D-GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       170 ~-g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      . -++|++|+  |.|.+||+.....   +...-.|...|..+.|..++ +.+.+-+ ...+..+|+++.+.
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-H~Etf~~~ele~~~  245 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-HMETFAIYELEDGS  245 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-ccCceeEEEccCCC
Confidence            5 56888888  9999999975422   22233477889999999887 2344444 68889999987764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=6.1e-16  Score=137.33  Aligned_cols=207  Identities=15%  Similarity=0.235  Sum_probs=152.1

Q ss_pred             cccceEEEEccCC-----CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            5 NIRDILTSFSPAL-----DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         5 ~V~~~~~~fs~dg-----~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      |++.+  -|.|+.     +.||+++ | .+|+|.+.........+.        ..+.. .+.+...+.|+..|...+  
T Consensus        98 P~tK~--~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~--------~L~~~-kns~~~aPlTSFDWne~d--  162 (364)
T KOG0290|consen   98 PVTKL--MWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS--------VLNNN-KNSEFCAPLTSFDWNEVD--  162 (364)
T ss_pred             Cccce--EecCCccccCcchhhccc-C-eEEEEeccCcCCceehhh--------hhccC-cccccCCcccccccccCC--
Confidence            56444  888876     3677665 3 799999874321111110        11111 235556678899998887  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                            .++|.+++-|-+..|||++++..  +.+.+-+|...|.+++|...+. .|++++.||.||+||++.-+.-..+.
T Consensus       163 ------p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY  236 (364)
T KOG0290|consen  163 ------PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY  236 (364)
T ss_pred             ------cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence                  67899999999999999999733  4444468999999999998554 58999999999999998765433332


Q ss_pred             c---CCCCeeEEEEccCC-CEEEEEC---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEE
Q 008058          157 A---STKGISCMAVSSDG-KMLATAA---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~---~~~~v~~l~~~p~g-~~l~~~~---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vw  227 (579)
                      .   ...+...++|++.. +++|+-.   ..|.+.|++.. .++..+.+|.+.|+.++|.|.+ .++.++| +|..+-+|
T Consensus       237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG-DD~qaliW  315 (364)
T KOG0290|consen  237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG-DDCQALIW  315 (364)
T ss_pred             cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC-CcceEEEE
Confidence            2   23478889998854 5666543   79999999964 5688999999999999999965 4677777 79999999


Q ss_pred             EcCCCc
Q 008058          228 RTDGVK  233 (579)
Q Consensus       228 d~~~~~  233 (579)
                      |+...-
T Consensus       316 Dl~q~~  321 (364)
T KOG0290|consen  316 DLQQMP  321 (364)
T ss_pred             eccccc
Confidence            998653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=1.1e-15  Score=155.03  Aligned_cols=250  Identities=12%  Similarity=0.127  Sum_probs=180.9

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE--EEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .|++|+| +.+++|.|..+|+|.+||...+...  ..+..              ........++.+.|..... 
T Consensus       242 ~s~v--~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------~~~sh~~~v~~vvW~~~~~-  304 (555)
T KOG1587|consen  242 PSEV--TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------LEVSHSEPVTAVVWLQNEH-  304 (555)
T ss_pred             CCce--eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--------------ccccCCcCeEEEEEeccCC-
Confidence            4677  7779999 5678888889999999999876642  11111              1122245677888877421 


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEE-----ecC------CCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-----LSD------CHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-----~~~------~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~  147 (579)
                            +.-+++++.||.|..|+++.-.....     ...      .....++++.|.+ +-..|+.|+..|.|.--+-.
T Consensus       305 ------~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~  378 (555)
T KOG1587|consen  305 ------NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK  378 (555)
T ss_pred             ------CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence                  35588999999999998864322100     000      1234689999988 44569999999998774322


Q ss_pred             CC--------ceeeEeecCCCCeeEEEEccCCCE-EEEEC-CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008058          148 TG--------SLLGKFRASTKGISCMAVSSDGKM-LATAA-GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       148 ~~--------~~~~~~~~~~~~v~~l~~~p~g~~-l~~~~-g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  216 (579)
                      ..        +....+..|.++|+++.++|=+.. +.+++ .+++||... ...++..+..+...|++++|||...-++.
T Consensus       379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence            21        123345668889999999996554 44444 799999988 66778888888888999999999887777


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      +...||.+.+||+......   ++....-.......+.++     +.|+.|++|...|++++|++..
T Consensus       459 ~~d~~G~l~iWDLl~~~~~---Pv~s~~~~~~~l~~~~~s-----~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEE---PVLSQKVCSPALTRVRWS-----PNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             EEcCCCceehhhhhccccC---CcccccccccccceeecC-----CCCcEEEEecCCCcEEEEEcCc
Confidence            7778999999999877644   333333336677778887     7899999999999999999854

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=3.8e-16  Score=151.32  Aligned_cols=225  Identities=12%  Similarity=0.131  Sum_probs=171.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc--------------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS--------------  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~--------------  150 (579)
                      +.+|++|+.||+|+||.+.+|.++.++.  ..+.|.|++|+|.+.. ++.+.....+.+-+..-|.              
T Consensus       412 G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~  489 (733)
T KOG0650|consen  412 GEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASA  489 (733)
T ss_pred             cceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcC
Confidence            8999999999999999999999998875  4568999999997764 3333233334444432110              


Q ss_pred             -----------------------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCE
Q 008058          151 -----------------------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAV  202 (579)
Q Consensus       151 -----------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v  202 (579)
                                             -++..-.|...|..+.|+..|.+|++..     ..|.|+++...+...-|....+.|
T Consensus       490 ~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~v  569 (733)
T KOG0650|consen  490 PNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLV  569 (733)
T ss_pred             CCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCce
Confidence                                   1122223677899999999999999876     489999998776666676667889


Q ss_pred             EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       203 ~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      .++.|+|...+|++++  .+.|++||+......     ..+......++..+.+     |.|..|+.|+.|+.+..||++
T Consensus       570 q~v~FHPs~p~lfVaT--q~~vRiYdL~kqelv-----KkL~tg~kwiS~msih-----p~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  570 QRVKFHPSKPYLFVAT--QRSVRIYDLSKQELV-----KKLLTGSKWISSMSIH-----PNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             eEEEecCCCceEEEEe--ccceEEEehhHHHHH-----HHHhcCCeeeeeeeec-----CCCCeEEEecCCCeeEEEEcc
Confidence            9999999999999886  678999999875532     3444555667777776     999999999999999999975


Q ss_pred             CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc
Q 008058          283 NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~  362 (579)
                      -...                                                      ..+++..|...+.+++|.+.=.
T Consensus       638 lssk------------------------------------------------------Pyk~lr~H~~avr~Va~H~ryP  663 (733)
T KOG0650|consen  638 LSSK------------------------------------------------------PYKTLRLHEKAVRSVAFHKRYP  663 (733)
T ss_pred             cCcc------------------------------------------------------hhHHhhhhhhhhhhhhhccccc
Confidence            3311                                                      0114567888899999998888


Q ss_pred             eeeccccceecccceee
Q 008058          363 LLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       363 ~l~~s~s~d~~~~~w~~  379 (579)
                      ++ +|||.|+++.+...
T Consensus       664 Lf-as~sdDgtv~Vfhg  679 (733)
T KOG0650|consen  664 LF-ASGSDDGTVIVFHG  679 (733)
T ss_pred             ee-eeecCCCcEEEEee
Confidence            88 99999999888753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=4.6e-15  Score=155.02  Aligned_cols=254  Identities=14%  Similarity=0.149  Sum_probs=161.3

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++.|..+  +.++ ++.+|++||.||+|+|||...-... .++      -....|++.      +..+.++.....    
T Consensus      1048 s~~v~k~--a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~------rS~ltys~~------~sr~~~vt~~~~---- 1109 (1431)
T KOG1240|consen 1048 SSAVIKL--AVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSA------RSELTYSPE------GSRVEKVTMCGN---- 1109 (1431)
T ss_pred             cccccce--eecCCCCceEEEecCCceEEEeeehhhhcCccee------eeeEEEecc------CCceEEEEeccC----
Confidence            4455433  5555 5699999999999999997532110 000      011122211      222223332222    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEE------EEecCCC-CCCEEE-EEEcc-CCC-EEEEEeCCCcEEEEeCCCCc
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK------WRLSDCH-PGGVSA-ISFAT-HGS-CIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~------~~~~~~h-~~~V~~-l~~~~-~~~-~l~s~~~dg~v~iwd~~~~~  150 (579)
                           ++.+|+++.||.|.+.++......      .+....+ .+.+.+ -+|.. .+. .++.+...+.|..||++...
T Consensus      1110 -----~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1110 -----GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred             -----CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence                 778999999999999998762111      1111222 233333 34433 233 67788888999999998776


Q ss_pred             eeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecC---CCEEEEEec-CC
Q 008058          151 LLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDN---GKYVLSSAV-GE  221 (579)
Q Consensus       151 ~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~---~~~l~s~s~-~d  221 (579)
                      ....++.  ..+.|++++.+|.+.++++|.  |.+.+||++=+.++..+. ++..+++.+..+|-   ....+++++ ..
T Consensus      1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred             hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence            5555443  346899999999999999998  999999999888887763 45578888877764   346666665 67


Q ss_pred             CeEEEEEcCCCccccceeEEeee---------cCc--------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          222 RYIALWRTDGVKKQSASCVLAME---------HPA--------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +.|.+|++.++....   ++-..         .+.        .......+.     ..+.++.+|+.|..|+.||....
T Consensus      1265 nevs~wn~~~g~~~~---vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~-----~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQT---VLWASDGAPILSYALPSNDARKPDSLAGISCGVC-----EKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             CceeeeecccCcceE---EEEcCCCCcchhhhcccccCCCCCcccceeeecc-----cCCceeeecCCccceeeccCCCc
Confidence            889999999885431   11111         000        011112222     35678899999999999998766


Q ss_pred             eee
Q 008058          285 EEL  287 (579)
Q Consensus       285 ~~~  287 (579)
                      +..
T Consensus      1337 ~~s 1339 (1431)
T KOG1240|consen 1337 EIS 1339 (1431)
T ss_pred             ccc
Confidence            543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=1.4e-15  Score=145.55  Aligned_cols=176  Identities=16%  Similarity=0.302  Sum_probs=143.0

Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +...++++++||.+.+.+-. ++.. +...+|.+.+.+-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|
T Consensus        74 ~~d~~~i~s~DGkf~il~k~-~rVE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c  150 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKS-ARVE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRC  150 (737)
T ss_pred             CcceEEEEcCCceEEEeccc-chhh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEE
Confidence            46789999999999888743 3333 33368999999999999999999999999999999 577665565556679999


Q ss_pred             EEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          165 MAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       165 l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      ++|.|+.+-++.+. +.+.+=.+.....+-.++.|.+-|.++.|+|.+..++++| +|-..++||-...      ..+..
T Consensus       151 ~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG-ED~kfKvWD~~G~------~Lf~S  223 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG-EDFRFKIWDAQGA------NLFTS  223 (737)
T ss_pred             EEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC-CceeEEeecccCc------ccccC
Confidence            99999877666555 8898888887777778899999999999999999999998 8999999998765      34566


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  277 (579)
                      ..+...++.++|.     |+ ..++.++. ++++
T Consensus       224 ~~~ey~ITSva~n-----pd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  224 AAEEYAITSVAFN-----PE-KDYLLWSY-NTAR  250 (737)
T ss_pred             Chhccceeeeeec-----cc-cceeeeee-eeee
Confidence            6778889999998     88 55555554 3455

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.68  E-value=2.9e-15  Score=132.93  Aligned_cols=200  Identities=14%  Similarity=0.210  Sum_probs=152.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      -|+.|.||+..+|+-. |..|.+|+++.+.. +.++.......             .....+.-.|.|-.        ..
T Consensus       127 ~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e-------------~~~~ftsg~WspHH--------dg  184 (370)
T KOG1007|consen  127 NCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE-------------MRHSFTSGAWSPHH--------DG  184 (370)
T ss_pred             eeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc-------------ccceecccccCCCC--------cc
Confidence            4569999999998877 88999999988765 44444222111             12234556676643        22


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCC-CceeeEeecCCCCeeEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLT-GSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~l  165 (579)
                      .-+..+.++++..||+++..+...+..+|...|.++.|+|+.++ |++|+.||.|++||.+. ..+++.+.+|...|.++
T Consensus       185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV  264 (370)
T ss_pred             ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE
Confidence            34666788999999999998888888899999999999998776 88999999999999985 45788899999999999


Q ss_pred             EEccCC-CEEEEEC--CeEEEEECCCC-----------------------------eeeEEeecCCCCEEEEEEecCCCE
Q 008058          166 AVSSDG-KMLATAA--GQLKTFNCSDH-----------------------------KKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       166 ~~~p~g-~~l~~~~--g~i~vwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      .|+|.- +++++|+  ..|.+|....-                             ..+.++..|...|.+++|+.-..+
T Consensus       265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW  344 (370)
T KOG1007|consen  265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW  344 (370)
T ss_pred             EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence            999954 4555665  57777754210                             124467789999999999988888


Q ss_pred             EEEEecCCCeEEEEEcC
Q 008058          214 VLSSAVGERYIALWRTD  230 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~  230 (579)
                      ++++-+.||.+.|=.+.
T Consensus       345 iFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  345 IFASLSYDGRVIISSVP  361 (370)
T ss_pred             eEEEeccCceEEeecCC
Confidence            77766689998876554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=6.7e-16  Score=144.30  Aligned_cols=194  Identities=21%  Similarity=0.182  Sum_probs=154.3

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++|++||..+++|+.||++|||++-+...+.....|...+.++.|+++                           +.+|
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~d---------------------------gk~l  201 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPD---------------------------GKFL  201 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCC---------------------------CcEE
Confidence            4599999999999999999999999888888888889999999999988                           8889


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCC---C--EEEEEeCCCcEEEEeCCCCce-----eeEeecC
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHG---S--CIYSAGADGMVCEIDPLTGSL-----LGKFRAS  158 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~---~--~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~  158 (579)
                      ++-+.+ ..+||+..++..+.+.. .+.......+.|+.|+   .  .++....-+.|+.||+...+.     .++....
T Consensus       202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~  280 (398)
T KOG0771|consen  202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR  280 (398)
T ss_pred             EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence            999999 99999999997665543 3344456788888877   3  333344556777777643221     1111123


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...|++++.+++|++++.|+  |.|.|++..+.+.+..+ +.|...|+.+.|+|+.+++++.+ .|....+..+.-.
T Consensus       281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svS-s~~~~~v~~l~vd  356 (398)
T KOG0771|consen  281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVS-SDNEAAVTKLAVD  356 (398)
T ss_pred             cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccc-cCCceeEEEEeec
Confidence            34799999999999999999  99999999988777655 57999999999999999999987 5888888877653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.68  E-value=3.8e-14  Score=140.48  Aligned_cols=236  Identities=9%  Similarity=0.049  Sum_probs=150.4

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEECC-CCeEE--EEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058           10 LTSFSPALDYFAICS-GDARIKIWDTL-KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        10 ~~~fs~dg~~las~s-~dg~i~vwd~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .++++|++++|++++ .++.|.+|++. ++...  ..... ..                  ....+.+.+.         
T Consensus        39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~------------------~p~~i~~~~~---------   90 (330)
T PRK11028         39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PG------------------SPTHISTDHQ---------   90 (330)
T ss_pred             cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CC------------------CceEEEECCC---------
Confidence            459999999987765 47899999986 34332  11110 00                  1122333332         


Q ss_pred             CcEEEEEE-CCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-----E
Q 008058           86 SSLLVLGT-GGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-----K  154 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-----~  154 (579)
                      ++++++++ .++.|.+|++.+..    .+..+  .+.....+++++|+|+++++++ .++.|.+||+.+...+.     .
T Consensus        91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~  168 (330)
T PRK11028         91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE  168 (330)
T ss_pred             CCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence            66666665 47889999997432    22211  2334567889999999986555 56999999997633221     1


Q ss_pred             eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC--C--eeeEEeecC------CCCEEEEEEecCCCEEEEEecC
Q 008058          155 FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCSD--H--KKMQKFSGH------PGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       155 ~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~--~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      ... .......++|+|+|+++++++   +.|.+|++..  +  +.+.++..+      ......+.|+|++++++++...
T Consensus       169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~  248 (330)
T PRK11028        169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT  248 (330)
T ss_pred             eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence            111 223567899999999998876   8999999973  3  233333322      1223468899999999988656


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECC
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ  282 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~  282 (579)
                      ++.|.+|++...... ...+..... ......+.++     |+|++|++++. +++|.+|+++
T Consensus       249 ~~~I~v~~i~~~~~~-~~~~~~~~~-~~~p~~~~~~-----~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        249 ASLISVFSVSEDGSV-LSFEGHQPT-ETQPRGFNID-----HSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCeEEEEEEeCCCCe-EEEeEEEec-cccCCceEEC-----CCCCEEEEEEccCCcEEEEEEc
Confidence            889999999654321 001111111 1122344565     99999998876 8999999764

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=1.1e-13  Score=127.21  Aligned_cols=145  Identities=19%  Similarity=0.346  Sum_probs=121.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      .+.|+++-.+. |+|||+.+-+.+.++..  .+..++.++.+++.+.+++.-+  ..|.|.+||..+-+.+.++.+|.+.
T Consensus        97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~  175 (391)
T KOG2110|consen   97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP  175 (391)
T ss_pred             cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Confidence            34456655554 99999999998876643  3666788888888888887643  4689999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          162 ISCMAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g-~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +.|++|+|+|.+||+++  | .|+||.+.+|+.+.+|....  ..|.+++|+|++++|.+++ ..++|.+|.+...
T Consensus       176 lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  176 LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEKV  250 (391)
T ss_pred             eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-CCCeEEEEEeccc
Confidence            99999999999999999  5 68999999999999996444  3477999999999988887 6899999988654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.5e-14  Score=124.03  Aligned_cols=242  Identities=16%  Similarity=0.215  Sum_probs=156.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.+||+.+  +|.  ..+|++|+ ||.|+-|.+.........+..-  .    .-++...+....+--..-|..+  +  
T Consensus        61 hdgpiy~~--~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lw--e----~~~P~~~~~~evPeINam~ldP--~--  125 (325)
T KOG0649|consen   61 HDGPIYYL--AFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLW--E----VKIPMQVDAVEVPEINAMWLDP--S--  125 (325)
T ss_pred             cCCCeeee--eee--hhheeecc-CceEEEeeehhhhhhccchhhh--h----hcCccccCcccCCccceeEecc--C--
Confidence            56888444  887  44677777 6999999886543211111000  0    0000000111111111223222  1  


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC--
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST--  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--  159 (579)
                          .+.++++..|+.++-||+++|+....+ .+|++.|.++.-......+++|+.||++++||+++++.+..+...+  
T Consensus       126 ----enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~  200 (325)
T KOG0649|consen  126 ----ENSILFAGGDGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP  200 (325)
T ss_pred             ----CCcEEEecCCeEEEEEEecCCEEEEEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence                445666669999999999999998666 7999999999985556679999999999999999999888765322  


Q ss_pred             --------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          160 --------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       160 --------~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                              ..|.+++.  +..++++|+ ..+.+|+++..++...|+ -..++..+.|..+  .++++| ..+.|.-|.+.
T Consensus       201 ~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~  274 (325)
T KOG0649|consen  201 NLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVDD--CVLIGG-EGNHVQSYTLN  274 (325)
T ss_pred             hhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeecc--eEEEec-cccceeeeeec
Confidence                    24556655  466899988 589999999999888886 5667888888754  566776 57789999886


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEE
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iw  279 (579)
                      ..-.    ......++..  ....+..   +| -++|-.++....++|+
T Consensus       275 Gvl~----a~ip~~s~~c--~s~s~~~---~p-~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  275 GVLQ----ANIPVESTAC--YSASWQT---SP-IKFISIAGFSNKLHIL  313 (325)
T ss_pred             cEEE----EeccCCccce--eeecccC---Cc-eEEEEecccceeeeee
Confidence            5321    1122223322  2222220   13 3566666777788887

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.67  E-value=2.5e-15  Score=135.41  Aligned_cols=225  Identities=13%  Similarity=0.199  Sum_probs=160.4

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      |+..++|+.+.|.-|++||.-+|+....+........             -...-+++|.+.         +..|+. +.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-------------~taAhsL~Fs~D---------Geqlfa-Gy  177 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-------------YTAAHSLQFSPD---------GEQLFA-GY  177 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHh-------------hhhheeEEecCC---------CCeEee-cc
Confidence            7788999999999999999999998887764322100             011223444332         555554 45


Q ss_pred             CCeEEEEEc-cCCeEE---EEe---cCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058           95 GGDVLALAV-SAGQLK---WRL---SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        95 ~g~i~iwd~-~~~~~~---~~~---~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      ...|+++|+ +.|...   .++   ..+..+-|.+++|+|- .+.++.++...++-+|.-..+.++..+-+|.+.|+.+.
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence            678999999 444321   111   1244678999999995 45788998888888888778889999999999999999


Q ss_pred             EccCCCEEEEEC---CeEEEEECCC-CeeeEEeecCCC-CEEEEEE--ecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQKFSGHPG-AVRFMTF--SDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       167 ~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~~~~h~~-~v~~l~~--~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |.++|+.|.+|.   ..|..||++. ..++..+..|.. .-..|-|  .|++++|++++ .||.|++||+.+....    
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~-tdG~V~vwdlk~~gn~----  332 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD-TDGSVRVWDLKDLGNE----  332 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC-CCccEEEEecCCCCCc----
Confidence            999999999998   5899999996 456777777766 3334544  58899999886 7999999999883321    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      +.........+..+.+.     |-=..+++++.
T Consensus       333 ~sv~~~~sd~vNgvsln-----P~mpilatssG  360 (406)
T KOG2919|consen  333 VSVTGNYSDTVNGVSLN-----PIMPILATSSG  360 (406)
T ss_pred             ccccccccccccceecC-----cccceeeeccC
Confidence            22334445555666665     55444555443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=3.8e-14  Score=144.10  Aligned_cols=292  Identities=13%  Similarity=0.120  Sum_probs=196.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCC--Ce--EEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLK--GQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      -|.++||+++++|+|..||+|.||.--.  +.  ....+.=|...+.                  ++.|.+.        
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~------------------~L~fS~~--------  262 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN------------------SLSFSSD--------  262 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc------------------eeEEecC--------
Confidence            4569999999999999999999996322  11  1111211222333                  3333332        


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-------
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-------  157 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------  157 (579)
                       |.+|++|+..|.+.+|.+.+++  .+++..-.++|..+.++||+.+......|..|.+....+.....++.+       
T Consensus       263 -G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  263 -GAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             -CceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence             8999999999999999999998  467777889999999999999999999999999988765544333332       


Q ss_pred             ----CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-----cCC------CCEEEEEEecCCCEEEEEec-
Q 008058          158 ----STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHP------GAVRFMTFSDNGKYVLSSAV-  219 (579)
Q Consensus       158 ----~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-----~h~------~~v~~l~~~~~~~~l~s~s~-  219 (579)
                          ..+-.+.++++|.-+.++-.+  |.|.+||+.+.+.+..+.     .+.      -.++.++.+..|.++++.-. 
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence                133567789999544454444  999999998877665552     122      23667777777888877531 


Q ss_pred             ------CC--CeEEEEEcCCCcccc-ceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCceeecc
Q 008058          220 ------GE--RYIALWRTDGVKKQS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       220 ------~d--~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                            .|  ..++.|........- .......+|....+......     +... ..++++.||.++||-+...+.+..
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~-----~~rs~~~vta~~dg~~KiW~~~~~~n~~k  494 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLN-----PTRSVRCVTASVDGDFKIWVFTDDSNIYK  494 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEec-----CcccceeEEeccCCeEEEEEEecccccCc
Confidence                  22  368899877654321 11222344665555555554     3333 889999999999998755443322


Q ss_pred             cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058          290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (579)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s  369 (579)
                      ..   ..+.|                                          ...-..|..++..++||.||..|  +.|
T Consensus       495 ~~---s~W~c------------------------------------------~~i~sy~k~~i~a~~fs~dGsll--a~s  527 (792)
T KOG1963|consen  495 KS---SNWTC------------------------------------------KAIGSYHKTPITALCFSQDGSLL--AVS  527 (792)
T ss_pred             Cc---cceEE------------------------------------------eeeeccccCcccchhhcCCCcEE--EEe
Confidence            11   01110                                          00111477789999999999776  556


Q ss_pred             ceecccceeeee
Q 008058          370 LLKSKRGRYVQN  381 (579)
Q Consensus       370 ~d~~~~~w~~~~  381 (579)
                      .|++|.+|+-.+
T Consensus       528 ~~~~Itiwd~~~  539 (792)
T KOG1963|consen  528 FDDTITIWDYDT  539 (792)
T ss_pred             cCCEEEEecCCC
Confidence            799999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=2.9e-15  Score=131.34  Aligned_cols=229  Identities=11%  Similarity=0.088  Sum_probs=161.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--e--------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--F--------  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~--------  155 (579)
                      +.+|+.|+..|.|++|++.+......+...|...|+.+.--|+ ..+.+-+.|+.+.+|++..+..+..  +        
T Consensus        25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFC  103 (323)
T KOG0322|consen   25 NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFC  103 (323)
T ss_pred             chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccc
Confidence            4458999999999999999988765554467888999999887 4678888999999999865321110  0        


Q ss_pred             ----e---------------------------------------cCCCCeeEEEEcc-CCC-EEEEEC---CeEEEEECC
Q 008058          156 ----R---------------------------------------ASTKGISCMAVSS-DGK-MLATAA---GQLKTFNCS  187 (579)
Q Consensus       156 ----~---------------------------------------~~~~~v~~l~~~p-~g~-~l~~~~---g~i~vwd~~  187 (579)
                          .                                       +..+.+.|..+.. +++ .++.++   |.+.+||+.
T Consensus       104 rfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S  183 (323)
T KOG0322|consen  104 RFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLS  183 (323)
T ss_pred             cceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEcc
Confidence                0                                       0112344444322 232 334444   999999999


Q ss_pred             CCeee----------EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc-cceeEEeeecCceeeEeEEec
Q 008058          188 DHKKM----------QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ-SASCVLAMEHPAVFMDCRCID  256 (579)
Q Consensus       188 ~~~~~----------~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      ++..+          .....|..+|.++.|.+.-..=++++ .+..+..|+++..... .......+.+++  +..+...
T Consensus       184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg-a~dkl~~~Sl~~s~gslq~~~e~~lknpG--v~gvrIR  260 (323)
T KOG0322|consen  184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG-ADDKLVMYSLNHSTGSLQIRKEITLKNPG--VSGVRIR  260 (323)
T ss_pred             CCceeeccccccccccchhhccCcceeeeechhhcCCcCCC-ccccceeeeeccccCcccccceEEecCCC--ccceEEc
Confidence            87433          33456899999999987655556666 5778999998764211 011222333332  3344444


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCC
Q 008058          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL  336 (579)
Q Consensus       257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~  336 (579)
                           ||++.+|+++.||+|+||+.++++.+..                                               
T Consensus       261 -----pD~KIlATAGWD~RiRVyswrtl~pLAV-----------------------------------------------  288 (323)
T KOG0322|consen  261 -----PDGKILATAGWDHRIRVYSWRTLNPLAV-----------------------------------------------  288 (323)
T ss_pred             -----cCCcEEeecccCCcEEEEEeccCCchhh-----------------------------------------------
Confidence                 9999999999999999999887765432                                               


Q ss_pred             CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                              +..|...|.+++|+||..++ +.+|.|..|-+|++
T Consensus       289 --------LkyHsagvn~vAfspd~~lm-AaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 --------LKYHSAGVNAVAFSPDCELM-AAASKDARISLWKL  322 (323)
T ss_pred             --------hhhhhcceeEEEeCCCCchh-hhccCCceEEeeec
Confidence                    33678789999999999999 99999999999975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=3.2e-16  Score=151.20  Aligned_cols=248  Identities=17%  Similarity=0.185  Sum_probs=167.5

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--------CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEE
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--------GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKT  183 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~v  183 (579)
                      ..|.+.|+.+.|+|....|++++.||++++|+++.        -+++.+|++|.++|.|+++.+++..+++|+  |+|+.
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~  370 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC  370 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence            45888999999999999999999999999999932        257889999999999999999999999999  99999


Q ss_pred             EECCCC----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058          184 FNCSDH----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       184 wd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      |++...          .....+.||.+.|+.+++|+....|++++ .||+++.|+......    +++...........+
T Consensus       371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs-~DgTvr~w~~~~~~~----~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS-SDGTVRLWEPTEESP----CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec-CCceEEeeccCCcCc----cccCCccccCCcceE
Confidence            966421          22456789999999999999988899987 699999999877653    233332222222333


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee---ecc--cCcccccccchhhhhccccceecCCce
Q 008058          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS---SED--VNSKSQKSATAAIFAAKLQDIVKPASV  328 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~  328 (579)
                      .+..    ....+.++...-|.--+++.+.+..+...........   ...  +.+...   .+..+++..+..++.++ 
T Consensus       446 d~~s----s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~---~~~~~~~hed~~Ir~~d-  517 (577)
T KOG0642|consen  446 DRTS----SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT---ADITFTAHEDRSIRFFD-  517 (577)
T ss_pred             eecc----chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC---CCeeEecccCCceeccc-
Confidence            3320    1112233322233333444444443332221111000   000  001111   12556666666666654 


Q ss_pred             EEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058          329 HTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       329 ~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                             .........+..|...+.++++.|+|-+| +++++|+++++|.+...
T Consensus       518 -------n~~~~~l~s~~a~~~svtslai~~ng~~l-~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  518 -------NKTGKILHSMVAHKDSVTSLAIDPNGPYL-MSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             -------ccccccchheeeccceecceeecCCCceE-EeecCCceeehhhccch
Confidence                   22233333566788899999999999999 99999999999998533

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=5.6e-16  Score=155.49  Aligned_cols=240  Identities=16%  Similarity=0.174  Sum_probs=178.8

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|  .|+.|...|.++++|+.|..++||...++.+.....+|.+.+...+.+..                         
T Consensus       191 naV--yca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-------------------------  243 (1113)
T KOG0644|consen  191 NAV--YCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-------------------------  243 (1113)
T ss_pred             hhe--eeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-------------------------
Confidence            456  67799999999999999999999999999999999999887776665544                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--------------
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG--------------  149 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------------  149 (579)
                        +.++++++.|..|++|.+..+..+..+ .+|++.|++++|+|-.    +.+.||++++||.+-.              
T Consensus       244 --n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~  316 (1113)
T KOG0644|consen  244 --NTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEK  316 (1113)
T ss_pred             --hhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccc
Confidence              677899999999999999999988544 7899999999999954    7789999999998610              


Q ss_pred             ceeeEee----------------cCCCCeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCC
Q 008058          150 SLLGKFR----------------ASTKGISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPG  200 (579)
Q Consensus       150 ~~~~~~~----------------~~~~~v~~l~~~p~g~~l~~~~-------------g~i~vwd~~~~~~~~~~~~h~~  200 (579)
                      ..+..+.                +....+-+++|...+-.+++..             ..+.+|++.+|+....+.+|..
T Consensus       317 ~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd  396 (1113)
T KOG0644|consen  317 DLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD  396 (1113)
T ss_pred             cceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc
Confidence            0010000                0011222333333333333322             3678999999999999999999


Q ss_pred             CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       201 ~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      .+..+.++|-+..++-....||...|||+-.+...   ..+... +...+. ..|+     ++|..++....-|.++|+.
T Consensus       397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi---k~y~~g-h~kl~d-~kFS-----qdgts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI---KHYFIG-HGKLVD-GKFS-----QDGTSIALSDDHGQLYILG  466 (1113)
T ss_pred             ceeeeeecCCCcHhhhhccCCCceEeeecccCCcc---eeeecc-cceeec-cccC-----CCCceEecCCCCCceEEec
Confidence            99999999976655444448999999999988755   233333 333333 3454     8999999999999999998


Q ss_pred             CCCceee
Q 008058          281 GQNIEEL  287 (579)
Q Consensus       281 ~~~~~~~  287 (579)
                      ...++..
T Consensus       467 ~gqs~s~  473 (1113)
T KOG0644|consen  467 TGQSKSQ  473 (1113)
T ss_pred             cCCCccc
Confidence            6655443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=1.8e-15  Score=147.46  Aligned_cols=239  Identities=14%  Similarity=0.185  Sum_probs=166.4

Q ss_pred             EccCCCEEEE--EeCCCcEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           13 FSPALDYFAI--CSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        13 fs~dg~~las--~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      |..+..++|.  .+.-|.|-||++..- ++.-       .+..-        -.-...++.+.|.|++        ...|
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPD-------gv~p~--------l~Ngt~vtDl~WdPFD--------~~rL  643 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPD-------GVMPG--------LFNGTLVTDLHWDPFD--------DERL  643 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCc-------ccccc--------cccCceeeecccCCCC--------hHHe
Confidence            4445555553  344688999988642 2211       01000        1114467889999998        6679


Q ss_pred             EEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           90 VLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ++++.||.|++|.+..+..      ....+..|...|+++.|+| ....|++++.|.+|++||+++++....+.+|.+.|
T Consensus       644 AVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqI  723 (1012)
T KOG1445|consen  644 AVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQI  723 (1012)
T ss_pred             eecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCce
Confidence            9999999999999976532      2234467999999999999 45679999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCe-eeEEeecCC-CCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcc
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHK-KMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK  234 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d----~~i~vwd~~~~~~  234 (579)
                      ..++|+|+|+.+++.+  |+|++|+-++++ .+..-++.. ..-..|.|.-+|++++..|. |    +.|.+||.++-..
T Consensus       724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~  802 (1012)
T KOG1445|consen  724 FGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDL  802 (1012)
T ss_pred             eEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccC
Confidence            9999999999999988  999999988764 343332222 22346788899999998874 4    4688888776542


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECC
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~  282 (579)
                      .. .....++..... -.-.++     +|. ..+++|-.|..|++|.+-
T Consensus       803 ~p-l~t~~lDvaps~-LvP~YD-----~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  803 RP-LYTQVLDVAPSP-LVPHYD-----YDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             Cc-ceeeeecccCcc-cccccc-----CCCceEEEecCCCceEEEEEec
Confidence            21 011122211111 111222     444 456677779999999753

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.5e-13  Score=139.79  Aligned_cols=270  Identities=14%  Similarity=0.157  Sum_probs=179.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccc----cccCccceEEeeeccccccccc--
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE----HLSVDYTCMKWLSVDRKKKRKL--   84 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~~~~~~~~--   84 (579)
                      -.||+|+++++.+.. ..|+||...+|.++..+..|..+.....+.+.-...    -.....+...|...++...+-.  
T Consensus        22 avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             cccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            379999998887774 589999999999999999888887776666541110    0011222233332211110000  


Q ss_pred             ---------------------------------------------------------------------CCcEEEEEECC
Q 008058           85 ---------------------------------------------------------------------GSSLLVLGTGG   95 (579)
Q Consensus        85 ---------------------------------------------------------------------~~~~l~~~~~~   95 (579)
                                                                                           +...+.....+
T Consensus       101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~  180 (792)
T KOG1963|consen  101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM  180 (792)
T ss_pred             CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence                                                                                 00001111112


Q ss_pred             CeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--C--ceeeEeecCCCCeeEEEEc
Q 008058           96 GDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--G--SLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        96 g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--~--~~~~~~~~~~~~v~~l~~~  168 (579)
                      ..+.+|+..++..   .......|...+++.++||++++++++..||.|.+|.--.  +  .....+.-|...|++++|+
T Consensus       181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS  260 (792)
T KOG1963|consen  181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS  260 (792)
T ss_pred             eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence            2244444444221   0111234666789999999999999999999999996322  1  2334566688899999999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee---
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---  243 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~---  243 (579)
                      ++|.+|++|+  +.+.+|.+.+++ .+-++.-.++|..+.++||+.+.+... .|+.|.+-...+.....  .+..+   
T Consensus       261 ~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~--tIsgi~~~  336 (792)
T KOG1963|consen  261 SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKS--TISGIKPP  336 (792)
T ss_pred             cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhh--hccCccCC
Confidence            9999999999  899999999987 344566788999999999999888776 79999999886554321  01111   


Q ss_pred             -----ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          244 -----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       244 -----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                           .........+.++     |..+.++-.+..|.|.+||+-+-+.+...
T Consensus       337 ~~~~k~~~~~l~t~~~id-----pr~~~~vln~~~g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  337 TPSTKTRPQSLTTGVSID-----PRTNSLVLNGHPGHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             CccccccccccceeEEEc-----CCCCceeecCCCceEEEEeccccceeeeE
Confidence                 1123344556665     76677888889999999999887776443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=9.3e-14  Score=143.29  Aligned_cols=287  Identities=14%  Similarity=0.173  Sum_probs=195.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+|=...++++...-.|+|||++.+++...|......               ...++.+......       +..++++
T Consensus      1071 ~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~---------------~t~Vs~l~liNe~-------D~aLlLt 1128 (1387)
T KOG1517|consen 1071 KFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP---------------DTRVSDLELINEQ-------DDALLLT 1128 (1387)
T ss_pred             eecCCCceeEEcCCcceEEEEecccCceeccccCCCCC---------------CCccceeeeeccc-------chhheee
Confidence            89998888999887778999999999998877643311               2234445544433       2678999


Q ss_pred             EECCCeEEEEEccCC-----eEEEEe--cCCC----CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008058           92 GTGGGDVLALAVSAG-----QLKWRL--SDCH----PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~-----~~~~~~--~~~h----~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-  159 (579)
                      |+.||.|+||+-...     +.+...  +.++    .+.=.-+.|..+..+|+++|.-..|+|||......+..+.... 
T Consensus      1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred             eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence            999999999986432     222111  1111    1111345677777778888788999999998777766655433 


Q ss_pred             CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCe---eeEEeecCCCC--EEEEEEecCCCE-EEEEecCCCeEEEEEcC
Q 008058          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHK---KMQKFSGHPGA--VRFMTFSDNGKY-VLSSAVGERYIALWRTD  230 (579)
Q Consensus       160 ~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~---~~~~~~~h~~~--v~~l~~~~~~~~-l~s~s~~d~~i~vwd~~  230 (579)
                      ..|+++.-+. .|+++++|.  |.|++||.+...   .+.....|...  |..+.+-+.|-- |++++ .||.|++||++
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs-~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS-QDGDIQLLDLR 1287 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec-cCCeEEEEecc
Confidence            3677776543 468888886  999999998643   46777888877  999999886654 88887 79999999999


Q ss_pred             CCccccceeEEeee-cC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058          231 GVKKQSASCVLAME-HP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       231 ~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      ......   ..... +-  +..+++....     +....+|+|+. +.|+||++.. +++..++..              
T Consensus      1288 ~~~~e~---~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n-------------- 1343 (1387)
T KOG1517|consen 1288 MSSKET---FLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSG-EQLNIIKYN-------------- 1343 (1387)
T ss_pred             cCcccc---cceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecCh-hhhcccccC--------------
Confidence            853221   11111 11  2235556555     77888999988 9999999753 333222210              


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                               ..+                         +....+.+.+++|+|--.++ +.|+.|.++.++...
T Consensus      1344 ---------~~F-------------------------~~q~~gs~scL~FHP~~~ll-AaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1344 ---------PGF-------------------------MGQRIGSVSCLAFHPHRLLL-AAGSADSTVSIYSCE 1381 (1387)
T ss_pred             ---------ccc-------------------------ccCcCCCcceeeecchhHhh-hhccCCceEEEeecC
Confidence                     000                         00122356899999999999 889999999888763

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=4.4e-13  Score=121.03  Aligned_cols=232  Identities=16%  Similarity=0.210  Sum_probs=163.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccc--cccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ++++|+.|..-+++|..+| .+||+++--+....-+.+.+  .+....|.                             .
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR-----------------------------~   58 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR-----------------------------S   58 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh-----------------------------h
Confidence            6789999999999988776 79999875332211111111  11111111                             2


Q ss_pred             cEEEE-EECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecC
Q 008058           87 SLLVL-GTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRAS  158 (579)
Q Consensus        87 ~~l~~-~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~  158 (579)
                      ++++. |+.+      ..|.|||=....++.++.  -..+|.++.+.++  .|+.. ..+.|++|... +-+.++.+...
T Consensus        59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~--f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~  133 (346)
T KOG2111|consen   59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELS--FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETR  133 (346)
T ss_pred             ceEEEecCCCCCCCCCceEEEEecccCcEEEEEE--eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence            34444 3333      349999977777776663  5689999999765  55555 56789999987 44555555433


Q ss_pred             C--CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEcC
Q 008058          159 T--KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTD  230 (579)
Q Consensus       159 ~--~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~-i~vwd~~  230 (579)
                      .  .++.+++-+.+..+||.-+   |+|+|-|+...+.  -..+..|.+.|.+++.+-+|..+++++ ..|+ |+|||..
T Consensus       134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS-tkGTLIRIFdt~  212 (346)
T KOG2111|consen  134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS-TKGTLIRIFDTE  212 (346)
T ss_pred             cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec-cCcEEEEEEEcC
Confidence            2  3455555444555666656   8999999987654  467789999999999999999999998 5665 8999999


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +++..   .-+.-+.....+.+++|+     |+..+|+++|+.|+++||.++..
T Consensus       213 ~g~~l---~E~RRG~d~A~iy~iaFS-----p~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  213 DGTLL---QELRRGVDRADIYCIAFS-----PNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCcEe---eeeecCCchheEEEEEeC-----CCccEEEEEcCCCeEEEEEeecC
Confidence            99865   334445556677888998     99999999999999999987654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=2.3e-15  Score=141.90  Aligned_cols=225  Identities=16%  Similarity=0.221  Sum_probs=173.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+.|+.+|++|+.|+..|.|..+|+.++++..++.... .+.                  .+.|...         .. +
T Consensus       134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-tv~------------------Dv~~LHn---------eq-~  184 (545)
T KOG1272|consen  134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-TVR------------------DVTFLHN---------EQ-F  184 (545)
T ss_pred             eeeecCCccEEEecCCccceeeeecccceeeeeeehhh-hhh------------------hhhhhcc---------hH-H
Confidence            45899999999999999999999999999988775322 222                  2333321         23 3


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      ++.....-++|||-..-+. ..+ ..| ..|..+.|-|.--+|++++..|.++--|+.+|+.+..+....+.+..++-+|
T Consensus       185 ~AVAQK~y~yvYD~~GtEl-HCl-k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  185 FAVAQKKYVYVYDNNGTEL-HCL-KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             HHhhhhceEEEecCCCcEE-eeh-hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            3444455688888654443 233 333 6799999999988899999999999999999999999998888999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc
Q 008058          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      -+-.+-+|.  |+|.+|.....+++..+-.|.++|.+|++.++|+|++++| -|+.++|||++.-...   ......++.
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~~ql---~t~~tp~~a  337 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNFYQL---HTYRTPHPA  337 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeecccccc---ceeecCCCc
Confidence            888888887  9999999999999999999999999999999999999999 6999999999987633   111112332


Q ss_pred             eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                         ..+.++      + +-+++.+....+.||.
T Consensus       338 ---~~ls~S------q-kglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  338 ---SNLSLS------Q-KGLLALSYGDHVQIWK  360 (545)
T ss_pred             ---cccccc------c-ccceeeecCCeeeeeh
Confidence               334443      2 3355566667899994

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1e-14  Score=136.44  Aligned_cols=199  Identities=15%  Similarity=0.117  Sum_probs=149.9

Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec--
Q 008058          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG--  197 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~--  197 (579)
                      ..++|+++|..+++++.||++|+|+..+...+.....|...|.++.|+|||+.|++-+ ...+||+.+++..+.....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~  227 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS  227 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc
Confidence            7899999999999999999999999888877777888999999999999999999988 7999999999977766542  


Q ss_pred             CCCCEEEEEEecCC---C-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058          198 HPGAVRFMTFSDNG---K-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       198 h~~~v~~l~~~~~~---~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      .......+.|+.|+   . ++++....-+.|+.|++........-.....-.....+++...+     ++|++++.|+.|
T Consensus       228 k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~AlGT~d  302 (398)
T KOG0771|consen  228 KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLALGTMD  302 (398)
T ss_pred             cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-----CCCcEEEEeccC
Confidence            23346678888776   3 23333324456777776544321000111122233456777777     899999999999


Q ss_pred             CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008058          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (579)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (579)
                      |.|-|++..+.+.++-.+                                                      ..|...|+
T Consensus       303 GsVai~~~~~lq~~~~vk------------------------------------------------------~aH~~~VT  328 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK------------------------------------------------------EAHLGFVT  328 (398)
T ss_pred             CcEEEEEeceeeeeEeeh------------------------------------------------------hhheeeee
Confidence            999999987665543211                                                      25777899


Q ss_pred             EEeecCCcceeeccccceecccceee
Q 008058          354 NLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .+.|+||.+++ ++-|.|....+..+
T Consensus       329 ~ltF~Pdsr~~-~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  329 GLTFSPDSRYL-ASVSSDNEAAVTKL  353 (398)
T ss_pred             eEEEcCCcCcc-cccccCCceeEEEE
Confidence            99999999999 88888888877766

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.61  E-value=7.5e-15  Score=128.77  Aligned_cols=153  Identities=12%  Similarity=0.096  Sum_probs=112.5

Q ss_pred             CCEEEEEEcc-CCC--EEEEEeCCCcEEEEeCCCCce----------eeEeecCCCCeeEEEEccCCCEEEEEC--CeEE
Q 008058          118 GGVSAISFAT-HGS--CIYSAGADGMVCEIDPLTGSL----------LGKFRASTKGISCMAVSSDGKMLATAA--GQLK  182 (579)
Q Consensus       118 ~~V~~l~~~~-~~~--~l~s~~~dg~v~iwd~~~~~~----------~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~  182 (579)
                      +.+.+..+.. ++.  .++.|..+|.|.+||+.++..          +.....|..+|.++.+.+.-..=++|+  ..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            4455555422 333  367788999999999998733          333446888999999987544445555  5778


Q ss_pred             EEECCC--Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058          183 TFNCSD--HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       183 vwd~~~--~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      .|++..  +.+  -....-..-.|..+.+-||++.++++| +|+.|+||+.++....     ..+..|...+.+++|+  
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG-WD~RiRVyswrtl~pL-----AVLkyHsagvn~vAfs--  302 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG-WDHRIRVYSWRTLNPL-----AVLKYHSAGVNAVAFS--  302 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecc-cCCcEEEEEeccCCch-----hhhhhhhcceeEEEeC--
Confidence            887753  222  122222344588899999999999998 9999999999998754     3445556778889998  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEEC
Q 008058          259 GVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                         |+...+|+++.|++|.+|++
T Consensus       303 ---pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ---PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ---CCCchhhhccCCceEEeeec
Confidence               89899999999999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=1.1e-14  Score=139.53  Aligned_cols=178  Identities=20%  Similarity=0.260  Sum_probs=137.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  +|-.|+|||.-|++++.||.|++|.. +|.+..++                  ......+.|++|.|.+.+   
T Consensus       104 ~~A~--~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl------------------~Q~~~~v~c~~W~p~S~~---  159 (737)
T KOG1524|consen  104 AAAI--SSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV------------------VQNEESIRCARWAPNSNS---  159 (737)
T ss_pred             hhhh--hhcccCCCCceeeeecCCceEEEEec-cchHHHHH------------------hhcCceeEEEEECCCCCc---
Confidence            3566  77799999999999999999999984 45543222                  222456779999987633   


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                             ++-+..+.+.|=.+..+..+.+. ++|.+-|.++.|++..+.+++|+.|-..++||- .|+.+.+-..|..+|
T Consensus       160 -------vl~c~g~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  160 -------IVFCQGGHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAI  230 (737)
T ss_pred             -------eEEecCCeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccce
Confidence                   44455566666666655544444 579999999999999999999999999999995 577887778899999


Q ss_pred             eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          163 SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      ++++|+|+ +.++.++ +++++=           +...+.|..++|++||..++.++ ..|.+.+
T Consensus       231 TSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt-~~G~v~~  282 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGT-STGQLIV  282 (737)
T ss_pred             eeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccc-cCceEEE
Confidence            99999999 7777777 776621           23457899999999999988777 4665544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.60  E-value=1.5e-13  Score=127.73  Aligned_cols=243  Identities=18%  Similarity=0.208  Sum_probs=165.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----------------eEEEEeccccccccccccccccccccccC
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----------------QVQTEFADIASTETTSLYGNRLEREHLSV   66 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (579)
                      ..+|+.+  .|+|+|+.||+|+.+|.|.+|....-                .....+.+|..                  
T Consensus        65 ~~aVN~v--Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~------------------  124 (434)
T KOG1009|consen   65 TRAVNVV--RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD------------------  124 (434)
T ss_pred             cceeEEE--EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc------------------
Confidence            4567555  99999999999999999999976520                11122222322                  


Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                      .+-.++|.+.         +.++++++.|..+++||+..|+..... .+|...|..++|.|-++++++-+.|...+.+++
T Consensus       125 diydL~Ws~d---------~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  125 DIYDLAWSPD---------SNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             chhhhhccCC---------CceeeeeeccceEEEEEeccceeEeec-cccccccceeecchhhhhhhhhccCcccceeee
Confidence            3334566554         788999999999999999999998655 689999999999999999999999987777776


Q ss_pred             CCCceeeEee-------------------cCC----CCeeEEEEccCCCEEEEECC-----------eEEEEECCC-Cee
Q 008058          147 LTGSLLGKFR-------------------AST----KGISCMAVSSDGKMLATAAG-----------QLKTFNCSD-HKK  191 (579)
Q Consensus       147 ~~~~~~~~~~-------------------~~~----~~v~~l~~~p~g~~l~~~~g-----------~i~vwd~~~-~~~  191 (579)
                      ...+.++...                   -|.    .....++|+|+|.++++..|           ..++|+-.. .++
T Consensus       195 ~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP  274 (434)
T KOG1009|consen  195 KLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP  274 (434)
T ss_pred             eeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence            5332221111                   011    13456799999999998762           235554332 345


Q ss_pred             eEEeecCCCCEEEEEEecC------------------CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058          192 MQKFSGHPGAVRFMTFSDN------------------GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~~~~------------------~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      +..+++...++..+.|+|-                  +-.++.++  .+.|++||.+.....   +... .-+-..++-.
T Consensus       275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt--~~svyvydtq~~~P~---~~v~-nihy~~iTDi  348 (434)
T KOG1009|consen  275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT--KNSVYVYDTQTLEPL---AVVD-NIHYSAITDI  348 (434)
T ss_pred             eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee--cceEEEeccccccce---EEEe-eeeeeeecce
Confidence            6666666666666666651                  22344443  678999998886644   2222 2233344555


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      +|+     +||.+++..+.||-+.+-.++..+.
T Consensus       349 aws-----~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  349 AWS-----DDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             eec-----CCCcEEEEeccCCceEEEEEcchhc
Confidence            665     8999999999999888776665544

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.60  E-value=1.2e-14  Score=131.24  Aligned_cols=227  Identities=15%  Similarity=0.168  Sum_probs=157.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|||+|+|+|+++.- ++.|=|..+-+..+.|...                   ..+.-+.|...+        -..+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl-------------------dki~yieW~ads--------~~il   64 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL-------------------DKIVYIEWKADS--------CHIL   64 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH-------------------HHhhheeeeccc--------eeee
Confidence            45999999999999854 7778887776654433210                   123346676443        4567


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      .....++.|.+|++...+....+.. ...++.+++|+|||+.++ +..-|-.|.+|.+.+.+... ++-.+..+..++|+
T Consensus        65 C~~yk~~~vqvwsl~Qpew~ckIde-g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~  142 (447)
T KOG4497|consen   65 CVAYKDPKVQVWSLVQPEWYCKIDE-GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH  142 (447)
T ss_pred             eeeeccceEEEEEeecceeEEEecc-CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC
Confidence            7788899999999999998877754 567899999999997755 55568899999998766543 33344567899999


Q ss_pred             cCCCEEEEECC-----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          169 SDGKMLATAAG-----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       169 p~g~~l~~~~g-----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      |||++.+..+.     -+.+...+....++.+.-.+-..+.+.|+|||..+++   .|..+       .-     .++..
T Consensus       143 ~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---wd~~L-------ey-----kv~aY  207 (447)
T KOG4497|consen  143 PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---WDNVL-------EY-----KVYAY  207 (447)
T ss_pred             CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---ecchh-------hh-----eeeee
Confidence            99999999882     2333333334456666666677889999999988765   34321       00     00111


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                       +-+.-+..+.++     |-+++|++|+.|+.+++.|--+-+.+
T Consensus       208 -e~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  208 -ERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             -eeccceeEEEec-----cccceEEeeccchhhhhhceeeeeeh
Confidence             112223456676     88999999999999999875544443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=2.4e-14  Score=137.46  Aligned_cols=137  Identities=23%  Similarity=0.428  Sum_probs=115.3

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC--------------CeEEEEe-cC------------CCC
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA--------------GQLKWRL-SD------------CHP  117 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~--------------~~~~~~~-~~------------~h~  117 (579)
                      ...++|+.|.+.+        ...++++-.+|.+++||..-              +...... ..            --.
T Consensus       219 ktsvT~ikWvpg~--------~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~  290 (636)
T KOG2394|consen  219 KSSVTCIKWVPGS--------DSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE  290 (636)
T ss_pred             ccceEEEEEEeCC--------CceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence            4688999999987        67788999999999997531              1110000 00            012


Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~  195 (579)
                      +.|..++|+|||++|++.+.||.+||||..+.+.+..++..-+...|++|+|||++|++|+  ..|.||.+...+.+..-
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            4789999999999999999999999999999888888888888999999999999999999  79999999999999999


Q ss_pred             ecCCCCEEEEEEec
Q 008058          196 SGHPGAVRFMTFSD  209 (579)
Q Consensus       196 ~~h~~~v~~l~~~~  209 (579)
                      ++|++.|+.++|.|
T Consensus       371 qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  371 QGHKSWVSVVAFDP  384 (636)
T ss_pred             cccccceeeEeecc
Confidence            99999999999983

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=4.1e-14  Score=134.38  Aligned_cols=285  Identities=19%  Similarity=0.286  Sum_probs=193.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+-|+.+  -|...|..|++||.|.+|.+||+..+.....|.+                ||.......- |.|..     
T Consensus       142 ~GcVntV--~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S----------------GH~~NvfQaK-FiP~s-----  197 (559)
T KOG1334|consen  142 KGCVNTV--HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES----------------GHCNNVFQAK-FIPFS-----  197 (559)
T ss_pred             CCcccee--eecccCceeeccCccceEEeehhhccCccccccc----------------ccccchhhhh-ccCCC-----
Confidence            3556555  9999999999999999999999999988776642                3333222221 33333     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccC-CeEE-EEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee---
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSA-GQLK-WRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR---  156 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~-~~~~-~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~---  156 (579)
                        +..-+++++.||.|++=.+.. +.+. ......|.++|.-++.-|+..+ |++++.|+.+.-+|++.+....++.   
T Consensus       198 --~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~  275 (559)
T KOG1334|consen  198 --GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE  275 (559)
T ss_pred             --CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence              145689999999999877653 3332 1223569999999999997665 9999999999999998875544332   


Q ss_pred             cCCC---CeeEEEEccCCC-EEEEEC--CeEEEEECCCCe------eeEEeecC------CCCEEEEEEecCCCEEEEEe
Q 008058          157 ASTK---GISCMAVSSDGK-MLATAA--GQLKTFNCSDHK------KMQKFSGH------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       157 ~~~~---~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~------~~~~~~~h------~~~v~~l~~~~~~~~l~s~s  218 (579)
                      .+..   ..+.++.+|... .+++++  .-+++||.+.-.      .+.+|..|      .-.|++++|+.++.-++++-
T Consensus       276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  276 ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             cCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee
Confidence            2333   678899999766 666666  678999987432      23444322      24589999997776666654


Q ss_pred             cCCCeEEEEEcCCCcc----------ccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          219 VGERYIALWRTDGVKK----------QSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                       .|-.|+++.-..+..          ....+++.-.-+ ..+-.+-+|.     |...|+++|++-|.|.||+-.+++.+
T Consensus       356 -nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfG-----PrsEyVvSGSDCGhIFiW~K~t~eii  429 (559)
T KOG1334|consen  356 -NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFG-----PRSEYVVSGSDCGHIFIWDKKTGEII  429 (559)
T ss_pred             -cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeecc-----CccceEEecCccceEEEEecchhHHH
Confidence             588899995443322          001111221112 2233344555     88999999999999999999999999


Q ss_pred             cccCCceEEeeecccCcccccccchhhhhccccceec
Q 008058          288 RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVK  324 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  324 (579)
                      +-.++.+..+.|..     ...-.+.+++...+-.++
T Consensus       430 ~~MegDr~VVNCLE-----pHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  430 RFMEGDRHVVNCLE-----PHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             HHhhcccceEeccC-----CCCCCchhhccCCcccee
Confidence            88888777777654     222244666666665333

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.5e-13  Score=138.94  Aligned_cols=216  Identities=14%  Similarity=0.129  Sum_probs=138.9

Q ss_pred             CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC---CeEEEEE
Q 008058           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALA  102 (579)
Q Consensus        26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd  102 (579)
                      +..|.+||..... ...+..+...+....|+++                           ++.|+.++.+   ..|++||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPD---------------------------G~~la~~s~~~~~~~i~i~d  234 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPD---------------------------GSKLAYVSFENKKSQLVVHD  234 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCC---------------------------CCEEEEEEecCCCcEEEEEe
Confidence            4689999986554 4445544444555555554                           6667776643   3599999


Q ss_pred             ccCCeEEE-EecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEE--EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058          103 VSAGQLKW-RLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCE--IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       103 ~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~i--wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +.+++... ....+|   ..+++|+|||+.|+.++ .+|.+.+  ||+.++.. ..+..+...+.+..|+|||+.++.++
T Consensus       235 l~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s  310 (429)
T PRK01742        235 LRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS  310 (429)
T ss_pred             CCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE
Confidence            99886432 112333   34689999999888764 6776555  57665554 44555666788999999999877654


Q ss_pred             ---CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEE
Q 008058          179 ---GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC  254 (579)
Q Consensus       179 ---g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (579)
                         |...||++... .....+ ++..  ....|+|+|++++.++ .++ +.+||+.+++..   . .....   ......
T Consensus       311 ~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~-~~~-i~~~Dl~~g~~~---~-lt~~~---~~~~~~  378 (429)
T PRK01742        311 DRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN-GDN-VVKQDLTSGSTE---V-LSSTF---LDESPS  378 (429)
T ss_pred             CCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc-CCC-EEEEECCCCCeE---E-ecCCC---CCCCce
Confidence               66777765432 222223 3443  4578999999998876 454 666999887532   1 11111   112344


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEECC--Cceeeccc
Q 008058          255 IDNGGVDDAGLYVLAISETGVCYIWYGQ--NIEELRNT  290 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~  290 (579)
                      |+     |+|++|+.++.+|.+.+|.+-  +++..+.+
T Consensus       379 ~s-----PdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l  411 (429)
T PRK01742        379 IS-----PNGIMIIYSSTQGLGKVLQLVSADGRFKARL  411 (429)
T ss_pred             EC-----CCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence            66     999999999999988888752  34444433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-13  Score=140.59  Aligned_cols=189  Identities=15%  Similarity=0.141  Sum_probs=126.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++  ...+|||||++|++++.+   ..|++||+.+++.... ....              ++    .....|.|.    
T Consensus       204 ~~v--~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~--------------g~----~~~~~wSPD----  258 (429)
T PRK01742        204 QPL--MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR--------------GH----NGAPAFSPD----  258 (429)
T ss_pred             Ccc--ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC--------------Cc----cCceeECCC----
Confidence            356  556999999999988754   3699999988764321 1111              11    113455543    


Q ss_pred             ccccCCcEEEEEE-CCCeE--EEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC-ceeeEe
Q 008058           81 KRKLGSSLLVLGT-GGGDV--LALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG-SLLGKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~-~~g~i--~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~-~~~~~~  155 (579)
                           ++.|+++. .+|.+  ++||+.++... .+ ..+...+.+..|+|||+.|+.++ .+|...+|++... .....+
T Consensus       259 -----G~~La~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        259 -----GSRLAFASSKDGVLNIYVMGANGGTPS-QL-TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             -----CCEEEEEEecCCcEEEEEEECCCCCeE-ee-ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence                 66666654 67764  45566666543 33 34667788999999999877655 5788888876432 222223


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          156 RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                       .+..  .+..|+|||+.++.++ ..+.+||+.+++.......+  ...++.|+|+|+++++++ .++.+.+|.+.
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s-~~g~~~~l~~~  401 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSS-TQGLGKVLQLV  401 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEE-cCCCceEEEEE
Confidence             3333  4678999999998877 67788999988654322222  335678999999999987 58888888763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=2.6e-13  Score=140.04  Aligned_cols=242  Identities=17%  Similarity=0.204  Sum_probs=169.2

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CC----CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           16 ALDYFAICSGDARIKIWDT-LK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      |...+.+|+.||.||||+- .+    .+.+..+.+..+-          ..+..+. .....|...+         ..|+
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~----------~~~~r~~-~~v~dWqQ~~---------G~Ll 1181 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ----------LPGARGT-GLVVDWQQQS---------GHLL 1181 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeecccccc----------CccCCCC-CeeeehhhhC---------CeEE
Confidence            5568999999999999963 22    2334333322110          0111111 2456676653         3455


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC---ceeeEeecCCCC--eeE
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTG---SLLGKFRASTKG--ISC  164 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~--v~~  164 (579)
                      +++.-..|+|||.....+...+..+....|+++.-+- .|+.+++|..||.|++||.+..   ..+..++.|+..  |..
T Consensus      1182 ~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred             ecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccccee
Confidence            5555788999999999988888777777788876543 4789999999999999998743   357778888886  999


Q ss_pred             EEEccCCCE-EEEEC--CeEEEEECCCCee--eEEeecCC--C-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          165 MAVSSDGKM-LATAA--GQLKTFNCSDHKK--MQKFSGHP--G-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       165 l~~~p~g~~-l~~~~--g~i~vwd~~~~~~--~~~~~~h~--~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      +.+.+.|-- |++|+  |.|++||++....  ..++..|-  + ..+++..++....+++|+ . +.|+||++...+...
T Consensus      1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs-~-q~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS-A-QLIKIYSLSGEQLNI 1339 (1387)
T ss_pred             EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC-c-ceEEEEecChhhhcc
Confidence            999987654 88887  9999999997422  22222332  3 589999999999888876 4 899999998765432


Q ss_pred             cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      .+. -.-+........+..|.     |..-.+|+|+.|..|.||.....
T Consensus      1340 ~k~n~~F~~q~~gs~scL~FH-----P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1340 IKYNPGFMGQRIGSVSCLAFH-----PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cccCcccccCcCCCcceeeec-----chhHhhhhccCCceEEEeecCCc
Confidence            110 00112233344778887     88889999999999999986654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=6e-13  Score=122.01  Aligned_cols=195  Identities=18%  Similarity=0.324  Sum_probs=140.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..+|.+  +|++.-.-+|++..|-.|++||-.. .+...++                 ......++|++|-|..      
T Consensus        99 ~dlr~~--aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-----------------s~sQrnvtclawRPls------  152 (445)
T KOG2139|consen   99 IDLRGV--AWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-----------------SVSQRNVTCLAWRPLS------  152 (445)
T ss_pred             cceeeE--eechhhhhhhhhccCcEEEEeccCC-CCCceec-----------------chhhcceeEEEeccCC------
Confidence            345556  9999888889999999999999654 5444443                 2235678999999876      


Q ss_pred             cCCcEEEEEECCCeEEEEEccCC----eEE-------EEe--cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAG----QLK-------WRL--SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTG  149 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~----~~~-------~~~--~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~  149 (579)
                        ...+++|+..| |.+|.....    ..+       .++  ..+| .+|+++.|++||..+++++ .|..|.+||+.++
T Consensus       153 --aselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg  228 (445)
T KOG2139|consen  153 --ASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG  228 (445)
T ss_pred             --cceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence              55677777654 778876531    110       001  1345 6899999999999999987 5678999999998


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      ..+....-..+.++-+.|+|||.++.++.  +..++|+...........-..+.|....|+|+|++|+.+++  +.-.+|
T Consensus       229 ~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~ly  306 (445)
T KOG2139|consen  229 QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLY  306 (445)
T ss_pred             CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEE
Confidence            87665544556889999999999998887  89999965443222223334558999999999999888775  444555


Q ss_pred             EcC
Q 008058          228 RTD  230 (579)
Q Consensus       228 d~~  230 (579)
                      .+.
T Consensus       307 sl~  309 (445)
T KOG2139|consen  307 SLT  309 (445)
T ss_pred             EEe
Confidence            554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.57  E-value=4.7e-13  Score=136.00  Aligned_cols=244  Identities=18%  Similarity=0.219  Sum_probs=169.0

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCE--EEEEeC
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSC--IYSAGA  137 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~  137 (579)
                      ...++|+.+.+.+        +.+++.|+.+|.|.+||+..+..     +......|..+|+.+.|..+-.-  |++++.
T Consensus       242 ~s~v~~~~f~p~~--------p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss  313 (555)
T KOG1587|consen  242 PSEVTCLKFCPFD--------PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS  313 (555)
T ss_pred             CCceeEEEeccCC--------cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence            4567888888887        77899999999999999987654     22333568999999999765444  999999


Q ss_pred             CCcEEEEeCCCCce------eeEee------cCCCCeeEEEEccC-CCEEEEEC--CeEEEEE---CCCC-----eeeEE
Q 008058          138 DGMVCEIDPLTGSL------LGKFR------ASTKGISCMAVSSD-GKMLATAA--GQLKTFN---CSDH-----KKMQK  194 (579)
Q Consensus       138 dg~v~iwd~~~~~~------~~~~~------~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd---~~~~-----~~~~~  194 (579)
                      ||.|..|+++.-..      .....      .....+++++|.+. -..+++|+  |.|.--+   .+.+     +....
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence            99999998764322      11111      11237889999884 34566666  7776632   2222     12345


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC-CcEEEEEEcC
Q 008058          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA-GLYVLAISET  273 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d  273 (579)
                      +..|.++|..+.++|=+..++.++ .|-++++|.......    +++........+..++|+     |. ...++++..|
T Consensus       394 ~~~h~g~v~~v~~nPF~~k~fls~-gDW~vriWs~~~~~~----Pl~~~~~~~~~v~~vaWS-----ptrpavF~~~d~~  463 (555)
T KOG1587|consen  394 FITHIGPVYAVSRNPFYPKNFLSV-GDWTVRIWSEDVIAS----PLLSLDSSPDYVTDVAWS-----PTRPAVFATVDGD  463 (555)
T ss_pred             ccccCcceEeeecCCCccceeeee-ccceeEeccccCCCC----cchhhhhccceeeeeEEc-----CcCceEEEEEcCC
Confidence            667889999999999887766666 499999999773321    234455555557777887     44 3567778889


Q ss_pred             CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcE
Q 008058          274 GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDI  353 (579)
Q Consensus       274 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~  353 (579)
                      |.|.+||+.....    .|             ...                                    ...+.....
T Consensus       464 G~l~iWDLl~~~~----~P-------------v~s------------------------------------~~~~~~~l~  490 (555)
T KOG1587|consen  464 GNLDIWDLLQDDE----EP-------------VLS------------------------------------QKVCSPALT  490 (555)
T ss_pred             Cceehhhhhcccc----CC-------------ccc------------------------------------ccccccccc
Confidence            9999999743221    00             000                                    001122456


Q ss_pred             EEeecCCcceeeccccceecccceeee
Q 008058          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+.|+++|++| +.|..-|++.++++.
T Consensus       491 ~~~~s~~g~~l-avGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  491 RVRWSPNGKLL-AVGDANGTTHILKLS  516 (555)
T ss_pred             eeecCCCCcEE-EEecCCCcEEEEEcC
Confidence            67789999999 999999999999984

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=3.2e-13  Score=125.12  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=126.8

Q ss_pred             CcEEEEEECC--CeEEEEEccCCeEEEEecCCCC--------CCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCC-cee
Q 008058           86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHP--------GGVSAISFATH--GSCIYSAGADGMVCEIDPLTG-SLL  152 (579)
Q Consensus        86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~--------~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~  152 (579)
                      ..++++|+..  ..+.+||+...+.+++-..-..        -.++++.|-+.  ...|++++.-+.|++||.+.+ +++
T Consensus       161 p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV  240 (412)
T KOG3881|consen  161 PYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPV  240 (412)
T ss_pred             CceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcce
Confidence            5677888888  7799999999877655422111        23578899887  778999999999999999866 577


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      ..|.....+++++...|+|+++++|.  |.+..||++.++.... +.+..+.|++|..+|.+++++++| -|+.++|+|+
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G-LDRyvRIhD~  319 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG-LDRYVRIHDI  319 (412)
T ss_pred             eEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec-cceeEEEeec
Confidence            78887788999999999999999998  9999999999988766 889999999999999999999999 5999999999


Q ss_pred             CCCccc
Q 008058          230 DGVKKQ  235 (579)
Q Consensus       230 ~~~~~~  235 (579)
                      .+.+..
T Consensus       320 ktrkll  325 (412)
T KOG3881|consen  320 KTRKLL  325 (412)
T ss_pred             ccchhh
Confidence            986543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.57  E-value=2.5e-13  Score=130.56  Aligned_cols=194  Identities=18%  Similarity=0.263  Sum_probs=144.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecC----CCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC------------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD----CHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT------------  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~----~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~------------  148 (579)
                      +--+++|-..|.|.+.|....+.. +++.    -....|+++.|-|.+ ..++.+-.+|.+++||..-            
T Consensus       185 g~dllIGf~tGqvq~idp~~~~~s-klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  185 GLDLLIGFTTGQVQLIDPINFEVS-KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CcceEEeeccCceEEecchhhHHH-HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            667899999999999998763321 2111    123689999999954 4566777899999997531            


Q ss_pred             --Cc--------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC
Q 008058          149 --GS--------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN  210 (579)
Q Consensus       149 --~~--------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~  210 (579)
                        +.              ++..+.-..+.|+..+|+|||++||+.+  |.++|||..+.+++..++..-+...|++|+||
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD  343 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD  343 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence              11              1112222345788999999999999998  99999999998888888777788999999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC------------------------------cc
Q 008058          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG------------------------------GV  260 (579)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~  260 (579)
                      |+|++++| +|.-|.||.+...+     .+..-..|...++.++|++-                              .-
T Consensus       344 GKyIvtGG-EDDLVtVwSf~erR-----VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~  417 (636)
T KOG2394|consen  344 GKYIVTGG-EDDLVTVWSFEERR-----VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTG  417 (636)
T ss_pred             ccEEEecC-CcceEEEEEeccce-----EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCC
Confidence            99999998 79999999998875     34555566777777777610                              00


Q ss_pred             cC-------------CCcEEEEEEcCCeEEEEECCCcee
Q 008058          261 DD-------------AGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       261 ~~-------------~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      +.             ....+.+.+.|-++.+||+.....
T Consensus       418 S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  418 SAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             CcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence            01             224678889999999999865443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.56  E-value=6e-13  Score=118.51  Aligned_cols=205  Identities=10%  Similarity=0.131  Sum_probs=149.3

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC--eEEEE------ecCCCCCCEEEEEEcc-CCCEEEEEe
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG--QLKWR------LSDCHPGGVSAISFAT-HGSCIYSAG  136 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~--~~~~~------~~~~h~~~V~~l~~~~-~~~~l~s~~  136 (579)
                      .+.+.+.|.|......    ..  +.++.+..+++|.+...  +...+      ....+.++++++.|+. +-+++.+++
T Consensus        97 YP~tK~~wiPd~~g~~----pd--lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVY----PD--LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCccceEecCCccccC----cc--hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4566777877652210    22  45566678999999842  22110      1235678999999987 677899999


Q ss_pred             CCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEE
Q 008058          137 ADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTF  207 (579)
Q Consensus       137 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~  207 (579)
                      -|-+..+||++++..   ...+-+|...|..++|...+. .+++.+  |++++||++..+.-..+.   ....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            999999999998733   445778999999999998654 666666  999999999765433332   22456778899


Q ss_pred             ecCC-CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          208 SDNG-KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       208 ~~~~-~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ++.. +++++-..+...|.|.|++....    .+..+..|...+..+.|.+    ..+.+|+++++|.++.+||++..
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~t----pva~L~~H~a~VNgIaWaP----hS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCT----PVARLRNHQASVNGIAWAP----HSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCc----ceehhhcCcccccceEecC----CCCceeeecCCcceEEEEecccc
Confidence            8754 56777665667899999998753    3566777777788888873    35688999999999999998654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=2.7e-15  Score=150.74  Aligned_cols=238  Identities=18%  Similarity=0.171  Sum_probs=171.8

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~  191 (579)
                      .+|...|+|+.|...|.++++|+.|..|+||.+.++.+...+++|.+.|+.++.+.+..++++++  ..|++|-+.++.+
T Consensus       187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p  266 (1113)
T KOG0644|consen  187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP  266 (1113)
T ss_pred             HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence            47999999999999999999999999999999999999999999999999999999988999988  5799999999999


Q ss_pred             eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  271 (579)
                      +..+.+|++.|++++|+|--    +++ .||++++||.+-.-.. ....-........+....|.     .++..+++++
T Consensus       267 vsvLrghtgavtaiafsP~~----sss-~dgt~~~wd~r~~~~~-y~prp~~~~~~~~~~s~~~~-----~~~~~f~Tgs  335 (1113)
T KOG0644|consen  267 VSVLRGHTGAVTAIAFSPRA----SSS-DDGTCRIWDARLEPRI-YVPRPLKFTEKDLVDSILFE-----NNGDRFLTGS  335 (1113)
T ss_pred             HHHHhccccceeeeccCccc----cCC-CCCceEeccccccccc-cCCCCCCcccccceeeeecc-----cccccccccc
Confidence            99999999999999999864    444 7999999999822111 00000011222334445554     6788899999


Q ss_pred             cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCC
Q 008058          272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGE  351 (579)
Q Consensus       272 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~  351 (579)
                      .|+....|...-..   ......+-+..    +.+..   ...+++..+-        ....+....+.....+.+|...
T Consensus       336 ~d~ea~n~e~~~l~---~~~~~lif~t~----ssd~~---~~~~~ar~~~--------~~~vwnl~~g~l~H~l~ghsd~  397 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA---WRSNLLIFVTR----SSDLS---SIVVTARNDH--------RLCVWNLYTGQLLHNLMGHSDE  397 (1113)
T ss_pred             CCcccccchhhHhh---hhccceEEEec----ccccc---ccceeeeeee--------Eeeeeecccchhhhhhcccccc
Confidence            99999888753221   11100010110    11111   1233333321        1112222233334466789999


Q ss_pred             cEEEeecCCcceeeccccceecccceeee
Q 008058          352 DINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       352 v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +..+.+.|-..-++.+++.|++..+|++.
T Consensus       398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~  426 (1113)
T KOG0644|consen  398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIW  426 (1113)
T ss_pred             eeeeeecCCCcHhhhhccCCCceEeeecc
Confidence            99999999888777999999999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.56  E-value=1.1e-13  Score=135.83  Aligned_cols=229  Identities=15%  Similarity=0.207  Sum_probs=160.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .|++||.||+.+|+|+.|..|.||+.+-...+ .+ +|..                  .+.|+.+.|.       
T Consensus        54 DtV--ycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D------------------~IQCMsFNP~-------  104 (1081)
T KOG1538|consen   54 DTV--YCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHND------------------AIQCMSFNPI-------  104 (1081)
T ss_pred             ceE--EEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCC------------------eeeEeecCch-------
Confidence            346  67799999999999999999999986522221 11 2333                  3445555554       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~  160 (579)
                        ...+++|+ -.+.-+|..........   .....|.+++|..||++++.|-.||+|.+-+ .+|+....+..   .+.
T Consensus       105 --~h~LasCs-LsdFglWS~~qK~V~K~---kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Ns  177 (1081)
T KOG1538|consen  105 --THQLASCS-LSDFGLWSPEQKSVSKH---KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNS  177 (1081)
T ss_pred             --HHHhhhcc-hhhccccChhhhhHHhh---hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCC
Confidence              33344444 34567888776554321   2346799999999999999999999999987 45555444443   556


Q ss_pred             CeeEEEEccCC-----CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          161 GISCMAVSSDG-----KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g-----~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +|.+++|+|..     ..+++.+  .++..|.+. |+.+.+-..-.-...++.+.++|.|++.+|+ |+.+.+|.-..-.
T Consensus       178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGs-dk~L~~fTR~Gvr  255 (1081)
T KOG1538|consen  178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGS-DKQLSLFTRDGVR  255 (1081)
T ss_pred             CceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccC-CCceEEEeecCeE
Confidence            99999999953     4667776  577777764 4444333333344578899999999999994 9999998644422


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                            .-+....+..+..+...     |++++++.|+.||+|--|++
T Consensus       256 ------LGTvg~~D~WIWtV~~~-----PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  256 ------LGTVGEQDSWIWTVQAK-----PNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ------EeeccccceeEEEEEEc-----cCCceEEEEEccCeeehhhh
Confidence                  23445556666666666     99999999999999999985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.55  E-value=6e-13  Score=119.53  Aligned_cols=132  Identities=18%  Similarity=0.333  Sum_probs=100.1

Q ss_pred             CeEEEEEccCCe-EEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCC
Q 008058           96 GDVLALAVSAGQ-LKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK  172 (579)
Q Consensus        96 g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~  172 (579)
                      |...+|.+.... ....+.....++|.+++|+|+|+.|+..  ..++.|.+||++ ++.+..+.  ...++.+.|+|+|+
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~  113 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR  113 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence            345555553322 2223322345679999999999987654  457799999996 76766664  45778999999999


Q ss_pred             EEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----CCeEEEEEcCCC
Q 008058          173 MLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----ERYIALWRTDGV  232 (579)
Q Consensus       173 ~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~-----d~~i~vwd~~~~  232 (579)
                      ++++++     |.|.+||.++.+.+.++. |. .++.+.|+|+|+++++++..     |+.++||+....
T Consensus       114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999986     679999999988887765 33 47899999999999998753     788999998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=1.8e-12  Score=128.30  Aligned_cols=317  Identities=14%  Similarity=0.125  Sum_probs=179.9

Q ss_pred             CEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           18 DYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        18 ~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ++++ +-..+|.|.|.|..+.+.+..+...........|+++                           ++++++++.||
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------------gr~~yv~~rdg   58 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------------GRYLYVANRDG   58 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------------SSEEEEEETTS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------------CCEEEEEcCCC
Confidence            4444 4456899999999999999988754433333445544                           88899999999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------CCCeeEEEEc
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------TKGISCMAVS  168 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~l~~~  168 (579)
                      .|.++|+.+++.+.++..+  ....++++++||+++++++ .++.+.++|.++.+.++.+...       ...+.++..+
T Consensus        59 ~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s  136 (369)
T PF02239_consen   59 TVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS  136 (369)
T ss_dssp             EEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred             eEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence            9999999999999888544  4578999999999988665 6899999999999998887643       2367788888


Q ss_pred             cCCCEEEEEC---CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce------
Q 008058          169 SDGKMLATAA---GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS------  238 (579)
Q Consensus       169 p~g~~l~~~~---g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~------  238 (579)
                      |....++..-   +.|.+.|....+.+. +............|+|+++|++.+...++.|.++|..+++.....      
T Consensus       137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            8888666553   889888987654432 233345567789999999999887777889999998887533100      


Q ss_pred             ---eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          239 ---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       239 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         ....+.|+..-.  ++..    ...+...++.-..+.+.+||..+.+.++.++..-......  .+|+++    .+.
T Consensus       217 ~~~~~~~~php~~g~--vw~~----~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~--thP~s~----~vw  284 (369)
T PF02239_consen  217 HPGPGANFPHPGFGP--VWAT----SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK--THPDSR----YVW  284 (369)
T ss_dssp             EETTEEEEEETTTEE--EEEE----EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE----TT-S----EEE
T ss_pred             cccccccccCCCcce--EEee----ccccceecccccCCccccchhhcCeEEEEEECCCCcceee--cCCCCc----cEE
Confidence               011111222111  0100    0223333333334456677777776665543221111111  144444    444


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeecccccee-cccceee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSLLK-SKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~d~-~~~~w~~  379 (579)
                      +....+.   ....+.+.+-... ....++.. ....+..+.|++||+++-+|.-..+ .+.++|.
T Consensus       285 vd~~~~~---~~~~v~viD~~tl-~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  285 VDTFLNP---DADTVQVIDKKTL-KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             EE-TT-S---SHT-EEEEECCGT-EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred             eeccCCC---CCceEEEEECcCc-ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence            4411110   0223333332222 22222221 2224899999999998745544333 5666664

...

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.52  E-value=6.3e-13  Score=120.08  Aligned_cols=206  Identities=8%  Similarity=0.056  Sum_probs=156.0

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVC  142 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~  142 (579)
                      ...++|.+|.+.         ...++++..+.+|.||.....+  .....+..|...|++++|+|..+.|++|+.|..-+
T Consensus        10 ~~pitchAwn~d---------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay   80 (361)
T KOG1523|consen   10 LEPITCHAWNSD---------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY   80 (361)
T ss_pred             cCceeeeeecCC---------CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence            346778888775         7789999999999999998776  23344578999999999999999999999999999


Q ss_pred             EEeCCCC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee----EEeecCCCCEEEEEEecCCCE
Q 008058          143 EIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       143 iwd~~~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      +|....+   ++.-.+..++...+++.|+|.++.+++|+  ..|.||-.+...--    ..-+.+.+.|+++.|+|++-.
T Consensus        81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL  160 (361)
T KOG1523|consen   81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL  160 (361)
T ss_pred             ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence            9998433   34444566888999999999999999999  57888776543221    112456788999999999988


Q ss_pred             EEEEecCCCeEEEEEcCCCcc------------cc-ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          214 VLSSAVGERYIALWRTDGVKK------------QS-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      +++++ .|+..+++...-...            .. ...+.........+..+.|+     |+|..|+-.+.|+.+.+=|
T Consensus       161 laaGs-~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-----~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  161 LAAGS-TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-----PSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             ecccc-cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-----CCCCEeeEecCCCceEEee
Confidence            88776 799999997532110            00 00112222445566777787     9999999999999999988


Q ss_pred             CCCce
Q 008058          281 GQNIE  285 (579)
Q Consensus       281 ~~~~~  285 (579)
                      .....
T Consensus       235 a~~p~  239 (361)
T KOG1523|consen  235 AAGPS  239 (361)
T ss_pred             cCCCc
Confidence            76554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2.2e-12  Score=125.05  Aligned_cols=185  Identities=18%  Similarity=0.283  Sum_probs=142.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~  159 (579)
                      ..-|++++....|+-+++..|..+..+ .-..+.++++..++...+|++|+.+|.|..||.+....+.++..      |.
T Consensus       145 scDly~~gsg~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  145 SCDLYLVGSGSEVYRLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP  223 (703)
T ss_pred             CccEEEeecCcceEEEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence            344778888889999999999987555 34568999999999999999999999999999998776665543      22


Q ss_pred             C-----CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEc
Q 008058          160 K-----GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ~-----~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~  229 (579)
                      +     .|+++.|+.+|-.+++|.  |.+.|||+++.+++..- .+..-+|..+.|.+.  +..+++.  +...++|||-
T Consensus       224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~  301 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDE  301 (703)
T ss_pred             cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhccc
Confidence            2     499999999999999998  99999999998876543 334567889999765  4455554  5788999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      .+++..     ..+..... +...|+-     |++-+++++..++.+..|=++..
T Consensus       302 ~~Gk~~-----asiEpt~~-lND~C~~-----p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  302 CTGKPM-----ASIEPTSD-LNDFCFV-----PGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             ccCCce-----eeccccCC-cCceeee-----cCCceEEEecCCCcceeEEcccc
Confidence            998754     22322333 4444554     89999999999998888865443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=4.8e-11  Score=108.05  Aligned_cols=143  Identities=17%  Similarity=0.309  Sum_probs=108.8

Q ss_pred             EEEECCCeEEEEEccCC-eEEEEecC-CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCce--eeEeecCCCCeeE
Q 008058           90 VLGTGGGDVLALAVSAG-QLKWRLSD-CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSL--LGKFRASTKGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~-~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~--~~~~~~~~~~v~~  164 (579)
                      ++.-..+.|++|...++ +.+..+.. ....++.+++-+.+..+|+.-+ .-|.|++-|+...+.  ...+.+|...|.|
T Consensus       107 iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac  186 (346)
T KOG2111|consen  107 IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC  186 (346)
T ss_pred             EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE
Confidence            44455678999998743 33333321 2234455555444555555543 568999999976655  4678999999999


Q ss_pred             EEEccCCCEEEEEC--C-eEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          165 MAVSSDGKMLATAA--G-QLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g-~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ++++.+|..+|+++  | .|+|||..+|+.+.++...  ...|.+|+|+|++.+|++++ +.|++.|+.++...
T Consensus       187 v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS-dKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  187 VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS-DKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc-CCCeEEEEEeecCC
Confidence            99999999999999  5 6999999999999998643  35699999999999999887 79999999998744

>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=99.49  E-value=1.7e-14  Score=117.06  Aligned_cols=80  Identities=31%  Similarity=0.462  Sum_probs=76.3

Q ss_pred             eecccCChhhHHHHhhccChhhHHHHHHHHHHHHh-cCCCCcchhHHHHHHHHHHhcccccCC-CChhHHHHHHHHHHHH
Q 008058          484 DFETNIPVKKMRATILSLSPTNACKLLEVLVDLWQ-SRSYKGKNILQWIYFILVNHGHHLLSQ-ESLTPMLSSLYKVRKK  561 (579)
Q Consensus       484 ~l~~~~~~~~i~~tv~~Lp~~~~~~lL~~l~~~~~-~~~~~~~~~~~wl~~ll~~h~~~l~s~-~~l~~~l~~l~~~~~~  561 (579)
                      ++++.+|+++|++|+++||+.|+.+||+++++.++ +++.+.+++++|+++||+.|++||++. |++.+.|..|++.++.
T Consensus         8 ~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~   87 (110)
T PF04003_consen    8 EVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRE   87 (110)
T ss_pred             HHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999888 788899999999999999999999999 9999999999999999


Q ss_pred             hh
Q 008058          562 KL  563 (579)
Q Consensus       562 r~  563 (579)
                      |+
T Consensus        88 ~~   89 (110)
T PF04003_consen   88 RL   89 (110)
T ss_pred             HH
Confidence            99

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.3e-11  Score=125.87  Aligned_cols=235  Identities=9%  Similarity=-0.018  Sum_probs=147.1

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.+||....... .+ ..+...+.+..|+|||+.|+..+   .+..+++||+.+++.... ....+.+..++|+|||+.
T Consensus       180 ~l~~~d~dg~~~~-~l-t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQF-VV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence            5899998766543 22 23567899999999999988654   245799999988764332 223334557899999998


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecC
Q 008058          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+...   |  .|++||+.+++.. .+..+...+....|+|||+.|+.++..++.  |+++++.+++..      .+...
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~------~lt~~  329 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ------RITWE  329 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE------EeecC
Confidence            88652   3  6999999887654 444455567889999999998887744444  444466555322      12222


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccccee
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      ........|+     |||++|+..+.+   ..|++||+++++...-.....   .....++|+++    .|+.++.++. 
T Consensus       330 ~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~---~~~p~~SpDG~----~i~~~s~~~~-  396 (429)
T PRK03629        330 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL---DETPSIAPNGT----MVIYSSSQGM-  396 (429)
T ss_pred             CCCccCEEEC-----CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC---CCCceECCCCC----EEEEEEcCCC-
Confidence            2223445666     999999887653   368889998875432111111   11223678877    6666666542 


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                         ...+.+..  ........+.+|.+.+...+|||
T Consensus       397 ---~~~l~~~~--~~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        397 ---GSVLNLVS--TDGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ---ceEEEEEE--CCCCCeEECccCCCCcCCcccCC
Confidence               11122221  01122334556777778888876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.48  E-value=2.3e-12  Score=116.52  Aligned_cols=200  Identities=12%  Similarity=0.156  Sum_probs=153.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      -.||  .|.+|++|+..+|.+-....|.||.....+   ..++++.|.                  ..++++.|.+.   
T Consensus        10 ~~pi--tchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd------------------~~vtgvdWap~---   66 (361)
T KOG1523|consen   10 LEPI--TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD------------------KIVTGVDWAPK---   66 (361)
T ss_pred             cCce--eeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC------------------cceeEEeecCC---
Confidence            3688  666999999999999999999999987665   344554443                  35567888776   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEc-cCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAV-SAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----  152 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~-~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----  152 (579)
                            .+.|++|+.|..-++|.. ..++..  ..+ ..++..++++.|+|.++.|++|+.-..|.+|-++....-    
T Consensus        67 ------snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsK  139 (361)
T KOG1523|consen   67 ------SNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSK  139 (361)
T ss_pred             ------CCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhh
Confidence                  556999999999999998 444432  223 358889999999999999999999999999987643321    


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC-----CC-------------CeeeEEeecCCCCEEEEEEecCCC
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNC-----SD-------------HKKMQKFSGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~-----~~-------------~~~~~~~~~h~~~v~~l~~~~~~~  212 (579)
                      +.-+.+...|++++|+|++-++++|+  +..+||..     ++             |+++.++....+.|..+.|+|+|.
T Consensus       140 hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~  219 (361)
T KOG1523|consen  140 HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN  219 (361)
T ss_pred             hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence            12233456899999999999999998  77777643     21             233445545678899999999999


Q ss_pred             EEEEEecCCCeEEEEEcCCCc
Q 008058          213 YVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|+-.+ .|..+.+-|.....
T Consensus       220 ~lawv~-Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  220 RLAWVG-HDSTVSFVDAAGPS  239 (361)
T ss_pred             EeeEec-CCCceEEeecCCCc
Confidence            999998 79999999987764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=1.5e-10  Score=114.70  Aligned_cols=193  Identities=18%  Similarity=0.215  Sum_probs=134.8

Q ss_pred             CcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +++++ +-..+|.|.+.|..+.+.+.++..++ ..-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ...+
T Consensus         5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            34454 45567999999999999988885433 334567899999999999999999999999999999988544 5688


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC-------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH-------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      +++++||++++++.   +.+.++|.++.+.++++...       ...+..+..+|.+..++.+-.+.+.|.+-|....+.
T Consensus        83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence            99999999999887   89999999999999887543       346778888898886666654457787778776643


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecc
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~  289 (579)
                      .   ..... .......-..|+     |++++++++ ..++.|-++|.++++.+..
T Consensus       163 ~---~~~~i-~~g~~~~D~~~d-----pdgry~~va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  163 L---KVTTI-KVGRFPHDGGFD-----PDGRYFLVAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             E---EEEEE-E--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             c---ceeee-cccccccccccC-----cccceeeecccccceeEEEeeccceEEEE
Confidence            2   12222 223334445666     899987665 4577999999998876643

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.7e-11  Score=124.38  Aligned_cols=215  Identities=17%  Similarity=0.176  Sum_probs=140.5

Q ss_pred             CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---CCeEEEEEc
Q 008058           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---GGDVLALAV  103 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---~g~i~iwd~  103 (579)
                      ..|.+||...+. ...+..+...+....|+++                           ++.|+..+.   +..|++||+
T Consensus       182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpD---------------------------G~~lay~s~~~g~~~i~~~dl  233 (435)
T PRK05137        182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPN---------------------------RQEITYMSYANGRPRVYLLDL  233 (435)
T ss_pred             eEEEEECCCCCC-cEEEecCCCCeEeeEECCC---------------------------CCEEEEEEecCCCCEEEEEEC
Confidence            368888875443 3444444444444444443                           666666653   356999999


Q ss_pred             cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008058          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (579)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--  178 (579)
                      .+++.. .+ ..+.+.+.+..|+|||+.|+ +.+.++.  |++||+.+++. ..+..+........|+|||+.++..+  
T Consensus       234 ~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        234 ETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             CCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECC
Confidence            988764 22 34566788999999999865 5555554  78889887765 34554555667899999999888765  


Q ss_pred             ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058          179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       179 ---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                         ..|++||+.+++. ..+..+...+....|+|+|++++..+...  ..|.+||+..+...      .+.... .....
T Consensus       311 ~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------~lt~~~-~~~~p  382 (435)
T PRK05137        311 SGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------ILTSGF-LVEGP  382 (435)
T ss_pred             CCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------eccCCC-CCCCC
Confidence               2789999876654 34444455667789999999998876323  36888887654321      111211 23445


Q ss_pred             EecCCcccCCCcEEEEEEcC------CeEEEEECCCce
Q 008058          254 CIDNGGVDDAGLYVLAISET------GVCYIWYGQNIE  285 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~  285 (579)
                      .|+     |||++|+..+.+      ..++++|+..+.
T Consensus       383 ~~s-----pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        383 TWA-----PNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             eEC-----CCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence            566     999998876553      257777775543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.1e-11  Score=125.17  Aligned_cols=171  Identities=11%  Similarity=0.076  Sum_probs=119.9

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|....... .+ ..|...+.+..|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+|||+.
T Consensus       183 ~l~~~d~dg~~~~-~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        183 RLAIMDQDGANVR-YL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEEECCCCCCcE-EE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence            6888988655543 33 357788999999999999887753   468999999888653 34445667788999999998


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+.. +    ..|++||+.+++. ..+..+........|+|||++++..+..++  .|++||+.+++..      .+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~------~lt~~  332 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR------RISFG  332 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE------EeecC
Confidence            7644 3    3688899988764 456666666778999999999888764333  6888887765432      12112


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQ  282 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~  282 (579)
                      ........|+     |+|++|+..+.++   .|.+||..
T Consensus       333 ~~~~~~~~~S-----pdG~~ia~~~~~~~~~~i~~~d~~  366 (435)
T PRK05137        333 GGRYSTPVWS-----PRGDLIAFTKQGGGQFSIGVMKPD  366 (435)
T ss_pred             CCcccCeEEC-----CCCCEEEEEEcCCCceEEEEEECC
Confidence            2223345566     9999998876532   46666643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.7e-11  Score=125.17  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=127.0

Q ss_pred             eEEEEccCCCEEEEEeC---CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058            9 ILTSFSPALDYFAICSG---DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ...+|||||+.||..+.   +..|.+|++.+|+..... ......                  ....|.|.         
T Consensus       202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~------------------~~~~~SPD---------  253 (429)
T PRK03629        202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHN------------------GAPAFSPD---------  253 (429)
T ss_pred             eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCc------------------CCeEECCC---------
Confidence            56799999999997653   457999999888643321 111111                  12445543         


Q ss_pred             CcEEEEE-ECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLG-TGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~-~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +..|+.. +.+|  .|++||+.+++.. ++. .+...+....|+|||+.|+.++.+ +  .|+.+|+.+++. ..+....
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~~~-~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~  330 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEG  330 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEE-Ecc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCC
Confidence            5556554 4455  4999999988765 332 344567899999999988777654 3  455567766654 3333344


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe---EEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY---IALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~---i~vwd~~~  231 (579)
                      ....+..|+|||+.++..+     ..|++||+.+++. ..+... .......|+|||++++.++ .++.   +.++++..
T Consensus       331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s-~~~~~~~l~~~~~~G  407 (429)
T PRK03629        331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSS-SQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEE-cCCCceEEEEEECCC
Confidence            4566789999999988764     3689999988764 334322 2334678999999999887 4553   67777755


Q ss_pred             Cc
Q 008058          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       408 ~~  409 (429)
T PRK03629        408 RF  409 (429)
T ss_pred             CC
Confidence            43

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=9.6e-12  Score=111.76  Aligned_cols=153  Identities=16%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             EEEEEccCCCEEEEEeC----------CCcEEEEeCC-CCceeeEeec-CCCCeeEEEEccCCCEEEEEC----CeEEEE
Q 008058          121 SAISFATHGSCIYSAGA----------DGMVCEIDPL-TGSLLGKFRA-STKGISCMAVSSDGKMLATAA----GQLKTF  184 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~----------dg~v~iwd~~-~~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~----g~i~vw  184 (579)
                      ..+.|+|+|.+|+.-..          -|...+|.++ .+..+..+.- ..++|.+++|+|+|+.+++..    +.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            56788999988654332          1234444442 2233444433 344799999999999877653    689999


Q ss_pred             ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      |++ ++.+.++.  ...++.+.|+|+|++++.++..  .|.+.+||.++.+.     +....+..  ...+.|+     |
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~~~~--~t~~~Ws-----P  153 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFEHSD--ATDVEWS-----P  153 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccccCc--EEEEEEc-----C
Confidence            996 66666664  5678899999999999998743  46799999996653     34444443  4667787     9


Q ss_pred             CCcEEEEEEc------CCeEEEEECCCceeecc
Q 008058          263 AGLYVLAISE------TGVCYIWYGQNIEELRN  289 (579)
Q Consensus       263 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~  289 (579)
                      +|+++++++.      |+.++||+.. |+.+..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            9999999874      7899999984 555543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=5.6e-10  Score=110.80  Aligned_cols=241  Identities=16%  Similarity=0.220  Sum_probs=153.5

Q ss_pred             EEEccCCCEEEEEeC----CCcEEEEECCC--CeEEE--EeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058           11 TSFSPALDYFAICSG----DARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        11 ~~fs~dg~~las~s~----dg~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++++|++++|.++..    +|.|..|++..  +.+..  ......                  ..   -++...+++   
T Consensus        42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g------------------~~---p~~i~~~~~---   97 (345)
T PF10282_consen   42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG------------------SS---PCHIAVDPD---   97 (345)
T ss_dssp             EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS------------------SC---EEEEEECTT---
T ss_pred             EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC------------------CC---cEEEEEecC---
Confidence            489999999998876    56888888765  34322  221100                  01   111122222   


Q ss_pred             ccCCcEEEEEE-CCCeEEEEEccC-CeEEEE--ec----------CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008058           83 KLGSSLLVLGT-GGGDVLALAVSA-GQLKWR--LS----------DCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~-~~g~i~iwd~~~-~~~~~~--~~----------~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~  147 (579)
                         +.+++++. .+|.|.++++.. |.....  ..          ........++.|+|+|++++++. ....|++|++.
T Consensus        98 ---g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~  174 (345)
T PF10282_consen   98 ---GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID  174 (345)
T ss_dssp             ---SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred             ---CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence               66677766 588999999987 443222  11          11234578999999999988775 34579999987


Q ss_pred             CCc--e--eeEeec-CCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeec----C--CCCEEEEEEec
Q 008058          148 TGS--L--LGKFRA-STKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSG----H--PGAVRFMTFSD  209 (579)
Q Consensus       148 ~~~--~--~~~~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~--~~~~~~----h--~~~v~~l~~~~  209 (579)
                      ...  .  ...+.. .......++|+|+|+++++..   +.|.+|++.  ++..  +..+..    .  ......|.++|
T Consensus       175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp  254 (345)
T PF10282_consen  175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP  254 (345)
T ss_dssp             TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred             CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence            654  3  222332 334789999999999988876   899999988  4432  222221    1  12578899999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEEC--CCc
Q 008058          210 NGKYVLSSAVGERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYG--QNI  284 (579)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~--~~~  284 (579)
                      ||++|+++...++.|.+|++..  ++..   .+............+.++     |+|++|++++. ++.|.+|++  ++|
T Consensus       255 dg~~lyvsnr~~~sI~vf~~d~~~g~l~---~~~~~~~~G~~Pr~~~~s-----~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  255 DGRFLYVSNRGSNSISVFDLDPATGTLT---LVQTVPTGGKFPRHFAFS-----PDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             TSSEEEEEECTTTEEEEEEECTTTTTEE---EEEEEEESSSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CCCEEEEEeccCCEEEEEEEecCCCceE---EEEEEeCCCCCccEEEEe-----CCCCEEEEEecCCCeEEEEEEeCCCC
Confidence            9999999887888999999943  3322   233333334445666776     99999999885 679999975  455


Q ss_pred             ee
Q 008058          285 EE  286 (579)
Q Consensus       285 ~~  286 (579)
                      ..
T Consensus       327 ~l  328 (345)
T PF10282_consen  327 KL  328 (345)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.6e-11  Score=125.93  Aligned_cols=176  Identities=11%  Similarity=0.057  Sum_probs=121.9

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.+||...+... .+ ..+...+.+..|+|||+.|+.++.   +..|++||+.+++... +....+...+++|+|||+.
T Consensus       185 ~l~i~D~~g~~~~-~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        185 ALQVADSDGYNPQ-TI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEECCCCCCce-Ee-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence            5889998655433 33 346678999999999999888763   3469999998876543 3333445567899999997


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecC
Q 008058          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++.. +    ..|++||+.+++. ..+..+........|+|||++++.++..++.  |+++++.+++..   . .+.  .
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~-lt~--~  334 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---R-LTF--Q  334 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---E-eec--C
Confidence            7643 2    3799999988764 4566666666788999999999887744554  666676665422   1 111  1


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCceee
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEEL  287 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~  287 (579)
                      ........|+     |+|++|+..+.++   .|.+||+.+++..
T Consensus       335 g~~~~~~~~S-----pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        335 GNYNARASVS-----PDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             CCCccCEEEC-----CCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence            1222345666     9999998876543   6999999877643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=4.1e-12  Score=117.55  Aligned_cols=164  Identities=13%  Similarity=0.159  Sum_probs=126.6

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeEeec-CCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGKFRA-STKGISCMAVSSDGKMLATAA--GQLKTF  184 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vw  184 (579)
                      .+|.+.|.++.|+.++++|++|+.|..+++|++..      .+++..... |...|.|++|....+.+++|.  ++|...
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H  132 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH  132 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence            47999999999999999999999999999999853      355554433 446899999999999999998  899999


Q ss_pred             ECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058          185 NCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (579)
Q Consensus       185 d~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      |+.+.+.+..+..  ..+.|..+..+|..+.|++.+ .++.|.+||.+..... ...+.. .........+-|.+    .
T Consensus       133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~~~~-~~~~~~-AN~~~~F~t~~F~P----~  205 (609)
T KOG4227|consen  133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDRQNP-ISLVLP-ANSGKNFYTAEFHP----E  205 (609)
T ss_pred             ecccceeeeeecccCcccceeecccCCCCceEEEEe-cCceEEEEeccCCCCC-Cceeee-cCCCccceeeeecC----C
Confidence            9999998877752  235899999999988888887 7999999999886522 112222 22233333444542    2


Q ss_pred             CCcEEEEEEcCCeEEEEECCCc
Q 008058          263 AGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       263 ~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ...+|++.+..|-+.+||.+..
T Consensus       206 ~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  206 TPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             CceeEEeccccCCCCceeeccc
Confidence            4578888899999999997644

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=3.1e-11  Score=123.82  Aligned_cols=213  Identities=14%  Similarity=0.090  Sum_probs=138.5

Q ss_pred             CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC---CeEEEEEc
Q 008058           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG---GDVLALAV  103 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~---g~i~iwd~  103 (579)
                      .+|.+||...+ ....+..+...+....|+++                           ++.|+..+..   ..|++||+
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpD---------------------------g~~la~~s~~~~~~~l~~~dl  235 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPD---------------------------GKKLAYVSFERGRSAIYVQDL  235 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCC---------------------------CCEEEEEecCCCCcEEEEEEC
Confidence            36889998644 33444444444444555554                           6667766633   35999999


Q ss_pred             cCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--
Q 008058          104 SAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--  178 (579)
Q Consensus       104 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--  178 (579)
                      .+++... + ..+.+...+..|+|||+.++ +.+.+|  .|++||+.+++.. .+..+.......+|+|||+.++.++  
T Consensus       236 ~~g~~~~-l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        236 ATGQREL-V-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             CCCCEEE-e-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence            8887642 2 23344556889999999875 445555  5999999887653 4444555557789999999888765  


Q ss_pred             -C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058          179 -G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       179 -g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                       |  .|+++|+.+++.. .+..+......++|+|+|++++..+..++  .|.+||+.+++..      .+.+... ....
T Consensus       313 ~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------~Lt~~~~-~~~p  384 (433)
T PRK04922        313 GGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------TLTPGSL-DESP  384 (433)
T ss_pred             CCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------ECCCCCC-CCCc
Confidence             3  5788888776543 23323344557899999999987653332  6999999876532      1222211 1233


Q ss_pred             EecCCcccCCCcEEEEEEcC---CeEEEEECCC
Q 008058          254 CIDNGGVDDAGLYVLAISET---GVCYIWYGQN  283 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~  283 (579)
                      .|+     |||++|+..+.+   +.|++++...
T Consensus       385 ~~s-----pdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        385 SFA-----PNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             eEC-----CCCCEEEEEEecCCceEEEEEECCC
Confidence            565     999998887763   3677777754

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=7.9e-12  Score=114.03  Aligned_cols=251  Identities=15%  Similarity=0.166  Sum_probs=164.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      -++.|+.+|++||+|..+|+|.++.-....     ....++.|...-.   |.   ..-.....+..+.|.+...     
T Consensus        29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFD---YL---kSleieEKinkIrw~~~~n-----   97 (433)
T KOG1354|consen   29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFD---YL---KSLEIEEKINKIRWLDDGN-----   97 (433)
T ss_pred             eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccc---hh---hhhhhhhhhhhceecCCCC-----
Confidence            355899999999999999999999654222     2334444432211   10   1112234567788887642     


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeE-----------------------------------EEEecCCCCCCEEEEEEccC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQL-----------------------------------KWRLSDCHPGGVSAISFATH  128 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~-----------------------------------~~~~~~~h~~~V~~l~~~~~  128 (579)
                        ...+++.+.|.+|++|.+.....                                   ...+..+|+.-|+++.++.|
T Consensus        98 --~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD  175 (433)
T KOG1354|consen   98 --LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD  175 (433)
T ss_pred             --ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence              67788999999999998864211                                   11223468888999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC-ce--eeEeecCC-----CCeeEEEEccCC-C-EEEEEC-CeEEEEECCCCeee----E
Q 008058          129 GSCIYSAGADGMVCEIDPLTG-SL--LGKFRAST-----KGISCMAVSSDG-K-MLATAA-GQLKTFNCSDHKKM----Q  193 (579)
Q Consensus       129 ~~~l~s~~~dg~v~iwd~~~~-~~--~~~~~~~~-----~~v~~l~~~p~g-~-~l~~~~-g~i~vwd~~~~~~~----~  193 (579)
                      +..++++ .|-.|.+|++.-- +.  +..++.+.     .-|++..|+|.. + ++.+.+ |+|++-|++...+.    +
T Consensus       176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence            9998887 6778999998633 22  22233332     357888999943 3 344445 99999999854221    1


Q ss_pred             Ee------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-------------c-
Q 008058          194 KF------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------------A-  247 (579)
Q Consensus       194 ~~------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------------~-  247 (579)
                      .|            .+--..|..+.|+++|+|+++-.  =-+|++||+......    +.+.+-+             + 
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRD--yltvk~wD~nme~~p----v~t~~vh~~lr~kLc~lYEnD~  328 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD--YLTVKLWDLNMEAKP----VETYPVHEYLRSKLCSLYENDA  328 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec--cceeEEEeccccCCc----ceEEeehHhHHHHHHHHhhccc
Confidence            11            12224578899999999998742  378999999665432    1111111             1 


Q ss_pred             --eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          248 --VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       248 --~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                        .... ++|+     .++.++++|+..+..++|+...|.
T Consensus       329 IfdKFe-c~~s-----g~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  329 IFDKFE-CSWS-----GNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hhheeE-EEEc-----CCcceEecccccceEEEecCCCCc
Confidence              1122 3343     688899999999999999966553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.2e-11  Score=124.51  Aligned_cols=202  Identities=18%  Similarity=0.150  Sum_probs=128.0

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...... ..+ ..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus       177 ~L~~~D~dG~~~-~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        177 QLQISDADGQNA-QSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEEECCCCCCc-eEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            477777744332 233 3467789999999999998877643   359999998887543 3333455678999999998


Q ss_pred             EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--CCccccceeEEeeecC
Q 008058          174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--GVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~--g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~  246 (579)
                      ++.. +  |  .|+++|+.++. ...+..+........|+|||++++..+..++...+|.+.  ++...   . ....  
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~---~-lt~~--  326 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ---R-VTFT--  326 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE---E-EecC--
Confidence            8753 3  4  46666665554 455665666667789999999988776445666666654  33211   1 1111  


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ........|+     |+|++|+..+.++   .|.+||+.+++...-......   ....++++++    .|+.++.+
T Consensus       327 g~~~~~~~~S-----pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~---~~p~~spdg~----~l~~~~~~  391 (427)
T PRK02889        327 GSYNTSPRIS-----PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRD---ESPSFAPNGR----YILYATQQ  391 (427)
T ss_pred             CCCcCceEEC-----CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCc---cCceECCCCC----EEEEEEec
Confidence            1112234566     9999999887654   699999988764322211111   1123677777    55555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=125.44  Aligned_cols=205  Identities=14%  Similarity=0.246  Sum_probs=149.3

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEe
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEID  145 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd  145 (579)
                      +.|+.|...         |.+|++|+.|-.+.|||+...+.+..+..+|...|.++.|-|  +++.+++|..|..|+++|
T Consensus        53 VN~LeWn~d---------G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   53 VNCLEWNAD---------GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             ecceeecCC---------CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            446666654         899999999999999999999988888899999999999999  567799999999999999


Q ss_pred             CCCC----------ceeeEeecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeee----------EEeecCCCCE
Q 008058          146 PLTG----------SLLGKFRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKM----------QKFSGHPGAV  202 (579)
Q Consensus       146 ~~~~----------~~~~~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~----------~~~~~h~~~v  202 (579)
                      +...          .....+..|...|..|+..|++ +.+.+++  |+|+-||++.....          ..+...--..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            9741          2344577788999999999998 6777887  99999999874221          1111122345


Q ss_pred             EEEEEecCCC-EEEEEecCCCeEEEEEcCCCccc-------------cceeEEee--e----------cCceeeEeEEec
Q 008058          203 RFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQ-------------SASCVLAM--E----------HPAVFMDCRCID  256 (579)
Q Consensus       203 ~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~-------------~~~~~~~~--~----------~~~~~~~~~~~~  256 (579)
                      .++.++|... +|++|+ .|-..++||.+...+.             ...|+..+  .          +-......+.|+
T Consensus       204 k~ltisp~rp~~laVGg-sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGG-SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeecCCCCceEEecC-CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            6889998766 556665 6899999995432110             00111111  1          111224556666


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                           |+|.-|++.-..-.|++||+..++..
T Consensus       283 -----pNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  283 -----PNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             -----CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence                 99988888766679999998877654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.43  E-value=1.9e-11  Score=113.55  Aligned_cols=191  Identities=10%  Similarity=0.093  Sum_probs=141.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE----EEEecCCCCCCEEEEEEccCCCEE-EEEeCC--CcEEEEeCCCCceeeEeecC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHPGGVSAISFATHGSCI-YSAGAD--GMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~d--g~v~iwd~~~~~~~~~~~~~  158 (579)
                      ...|++|..+|.+.+|....+..    ...+.  -..++..+.-++...+| ++|+..  ..+.+||+...+.+..-+.-
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv  192 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV  192 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence            66799999999999999985431    11221  22567777777766554 557777  78999999887554433221


Q ss_pred             ---------CCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          159 ---------TKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       159 ---------~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                               .-.++.+.|-+.  ...|+++.  +.+++||.+.+ +++..|.--..+++++...|++++++++. .-+.+
T Consensus       193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l  271 (412)
T KOG3881|consen  193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQL  271 (412)
T ss_pred             CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchh
Confidence                     125678888887  78888888  89999999976 56888887889999999999999988876 68999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      ..||++.++...    ..+..-...++.+...     |.+.++++++.|..++|||+++.+.+.
T Consensus       272 ~~FD~r~~kl~g----~~~kg~tGsirsih~h-----p~~~~las~GLDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  272 AKFDLRGGKLLG----CGLKGITGSIRSIHCH-----PTHPVLASCGLDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             heecccCceeec----cccCCccCCcceEEEc-----CCCceEEeeccceeEEEeecccchhhh
Confidence            999999987541    1122333334444443     888999999999999999999865543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=2.1e-11  Score=112.00  Aligned_cols=191  Identities=14%  Similarity=0.259  Sum_probs=132.6

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEI  144 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iw  144 (579)
                      ....-++|++-         -..++++..|..|++||-.. ++...+.......|++++|-|.+. .|+.|+..| |.+|
T Consensus        99 ~dlr~~aWhqH---------~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW  167 (445)
T KOG2139|consen   99 IDLRGVAWHQH---------IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIW  167 (445)
T ss_pred             cceeeEeechh---------hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEE
Confidence            34556777763         44578999999999999877 333344334456899999999654 466666555 8999


Q ss_pred             eCCCC----ce--------eeEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058          145 DPLTG----SL--------LGKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       145 d~~~~----~~--------~~~~~--~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~  207 (579)
                      .....    +.        .+.++  +| .+|+++.|.+||..+++++   ..|.|||..++..+.-..-..+.++-+.|
T Consensus       168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkw  246 (445)
T KOG2139|consen  168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW  246 (445)
T ss_pred             EcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence            76421    11        11122  23 4899999999999999998   68999999998766544445677889999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      +|||.+|+++. -|+..++|+.......   .-... ... .+...+|+     |.|++|+.+.. |.=.+|.
T Consensus       247 SPdgd~lfaAt-~davfrlw~e~q~wt~---erw~l-gsg-rvqtacWs-----pcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  247 SPDGDVLFAAT-CDAVFRLWQENQSWTK---ERWIL-GSG-RVQTACWS-----PCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             cCCCCEEEEec-ccceeeeehhccccee---cceec-cCC-ceeeeeec-----CCCCEEEEEEc-CCceEEE
Confidence            99999999887 6999999965443211   11122 222 56677787     99998876654 3334444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.7e-11  Score=121.41  Aligned_cols=180  Identities=14%  Similarity=0.094  Sum_probs=114.2

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEE--eCCCCceeeEeecCC
Q 008058           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEI--DPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iw--d~~~~~~~~~~~~~~  159 (579)
                      ++.|+..+..   ..|++||+.+++... + ....+.+.+..|+|||+.|+ +.+.+|...+|  |+..+. ...+..+.
T Consensus       207 G~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  283 (427)
T PRK02889        207 GTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS  283 (427)
T ss_pred             CCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence            6667766543   349999999887642 2 22335567899999999876 45677765555  554444 44555455


Q ss_pred             CCeeEEEEccCCCEEEEEC---Ce--EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~  232 (579)
                      .......|+|||+.++..+   |.  |+++++.+++. ..+..+........|+|+|++++..+..++  .|.+||+.++
T Consensus       284 ~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            5567789999999887655   44  44455555543 222222333456789999999987763222  6999999887


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEEC
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG  281 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~  281 (579)
                      +..      .+.... ......|+     |||++|+.++.++   .+++.+.
T Consensus       363 ~~~------~lt~~~-~~~~p~~s-----pdg~~l~~~~~~~g~~~l~~~~~  402 (427)
T PRK02889        363 QVT------ALTDTT-RDESPSFA-----PNGRYILYATQQGGRSVLAAVSS  402 (427)
T ss_pred             CeE------EccCCC-CccCceEC-----CCCCEEEEEEecCCCEEEEEEEC
Confidence            532      111111 12344566     9999998887644   3555555

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.4e-12  Score=124.14  Aligned_cols=275  Identities=11%  Similarity=0.089  Sum_probs=191.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCC-Ccee--eEeecCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLT-GSLL--GKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~-~~~~--~~~~~~~~  160 (579)
                      +..+++|+.|..|.+||...+.....+..+|...|....|-|.  .+.+++++.||.|++=.+.. +.+.  ..+..|.+
T Consensus       154 Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g  233 (559)
T KOG1334|consen  154 GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG  233 (559)
T ss_pred             CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccC
Confidence            8899999999999999999999988999999999999999883  45699999999999876543 3322  33556889


Q ss_pred             CeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEee---cCCC---CEEEEEEecCCC-EEEEEecCCCeEEEEEcC
Q 008058          161 GISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFS---GHPG---AVRFMTFSDNGK-YVLSSAVGERYIALWRTD  230 (579)
Q Consensus       161 ~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~---~h~~---~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~  230 (579)
                      +|.-++.-|+..+ |.+++  +.+.-+|++++.+...+.   .+..   ....++..|... .+++++ .|..+++||.+
T Consensus       234 ~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG-~dqf~RvYD~R  312 (559)
T KOG1334|consen  234 PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGG-SDQFARVYDQR  312 (559)
T ss_pred             ccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCC-hhhhhhhhccc
Confidence            9999999997653 45555  788889999876544332   2333   456788888776 566666 69999999987


Q ss_pred             CCcccc------ceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee------------ecc-c
Q 008058          231 GVKKQS------ASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE------------LRN-T  290 (579)
Q Consensus       231 ~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~-~  290 (579)
                      .-....      .-|. .........+.++.|+     .++.-+.+.-.|-.|++|+-.-+.-            +.. .
T Consensus       313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vY  387 (559)
T KOG1334|consen  313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVY  387 (559)
T ss_pred             chhhccccchhhhcCCccccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhh
Confidence            643221      0000 0111344557788887     6778888888888999995322111            111 2


Q ss_pred             CCce--EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc
Q 008058          291 KATK--ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ  368 (579)
Q Consensus       291 ~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~  368 (579)
                      ++++  ..+.....|.|...    ++++|+..|+|++|+        ......++-+.+-..-|.|+--.|--..| +|+
T Consensus       388 KGHrN~~TVKgVNFfGPrsE----yVvSGSDCGhIFiW~--------K~t~eii~~MegDr~VVNCLEpHP~~PvL-AsS  454 (559)
T KOG1334|consen  388 KGHRNSRTVKGVNFFGPRSE----YVVSGSDCGHIFIWD--------KKTGEIIRFMEGDRHVVNCLEPHPHLPVL-ASS  454 (559)
T ss_pred             cccccccccceeeeccCccc----eEEecCccceEEEEe--------cchhHHHHHhhcccceEeccCCCCCCchh-hcc
Confidence            2222  12344455666555    899999988777654        22333333445544467888788888888 999


Q ss_pred             cceecccceee
Q 008058          369 SLLKSKRGRYV  379 (579)
Q Consensus       369 s~d~~~~~w~~  379 (579)
                      +-|..||+|.=
T Consensus       455 Gid~DVKIWTP  465 (559)
T KOG1334|consen  455 GIDHDVKIWTP  465 (559)
T ss_pred             CCccceeeecC
Confidence            99999999953

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=3.8e-12  Score=122.71  Aligned_cols=207  Identities=18%  Similarity=0.334  Sum_probs=145.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +++-|+++  +|+.||.+|++||.|-.+.|||.-..+.++.+.                .||.. .+.++.|.|..    
T Consensus        49 H~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~----------------TgHta-NIFsvKFvP~t----  105 (758)
T KOG1310|consen   49 HTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSIS----------------TGHTA-NIFSVKFVPYT----  105 (758)
T ss_pred             ccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeee----------------ccccc-ceeEEeeeccC----
Confidence            35678666  999999999999999999999998888877764                24543 23355565543    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC---------CeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCce
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSA---------GQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~---------~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~  151 (579)
                         ++.++++|..|..|+++|+..         .+........|...|.-++..|++ ..+.+++.||+++-+|++....
T Consensus       106 ---nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  106 ---NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             ---CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence               267899999999999999985         122223446789999999999998 6799999999999999986321


Q ss_pred             -ee---------EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC--------C----------eeeEEe-ecCC
Q 008058          152 -LG---------KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD--------H----------KKMQKF-SGHP  199 (579)
Q Consensus       152 -~~---------~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~--------~----------~~~~~~-~~h~  199 (579)
                       ..         .+...--...|+.++|... +|++|+  --.++||.+.        +          .++..| ++|-
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl  262 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL  262 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence             11         1111112567899999655 566666  4788999431        1          122223 2332


Q ss_pred             --------CC---EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          200 --------GA---VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       200 --------~~---v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                              ..   ++-+.|+|+|.-|+..- ....|+++|+..++..
T Consensus       263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~-~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  263 KNSQGNLDRYITCCTYVTFNPNGTELLVSW-GGEHVYLFDVNEDKSP  308 (758)
T ss_pred             cCcccccccceeeeEEEEECCCCcEEEEee-CCeEEEEEeecCCCCc
Confidence                    11   45678999998777654 3557999999887644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-10  Score=122.62  Aligned_cols=192  Identities=11%  Similarity=0.070  Sum_probs=128.4

Q ss_pred             CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-------ce
Q 008058           86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-------SL  151 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~  151 (579)
                      +.++++|+.||+|++||...-       +...++ ......+.++.+.+.+..++.++.||.|++.++...       .+
T Consensus      1061 ~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~ 1139 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQ 1139 (1431)
T ss_pred             CceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeee
Confidence            689999999999999998741       112222 124578999999999999999999999999988652       12


Q ss_pred             eeEeecCCC--CeeEEEEcc-CCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          152 LGKFRASTK--GISCMAVSS-DGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       152 ~~~~~~~~~--~v~~l~~~p-~g~-~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                      .+....+..  -|..-++.. ++. .++.+.  +.|..||+++.....++  ....+.|++++.+|.+.++++|. ..|.
T Consensus      1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt-s~G~ 1218 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT-SRGQ 1218 (1431)
T ss_pred             eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec-CCce
Confidence            222222222  233334433 233 455554  89999999987654444  33457899999999999999988 5899


Q ss_pred             EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECCCce
Q 008058          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQNIE  285 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~  285 (579)
                      +.+||++-+...   +.+..++...... ++.++.  .|.....++++.  .+-|.+|++.+|.
T Consensus      1219 l~lWDLRF~~~i---~sw~~P~~~~i~~-v~~~~~--~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPI---LSWEHPARAPIRH-VWLCPT--YPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             EEEEEeecCcee---ecccCcccCCcce-EEeecc--CCCCceEEEecccCCCceeeeecccCc
Confidence            999999988754   3344444332222 222211  144455555544  7789999998884

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=2.4e-09  Score=106.25  Aligned_cols=277  Identities=14%  Similarity=0.169  Sum_probs=165.3

Q ss_pred             EEEEECC----CeEEEEEc--cCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCC--c--eeeE
Q 008058           89 LVLGTGG----GDVLALAV--SAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTG--S--LLGK  154 (579)
Q Consensus        89 l~~~~~~----g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~--~--~~~~  154 (579)
                      +++|+..    +.|..|++  .+++....-...-......++++|++++|+++..    ++.|..|++...  +  .+..
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~   81 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS   81 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence            4566655    57888888  5555432111123355678899999999999976    568988887653  3  3334


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE---ee--c--------CCCCEEEEEEecCCCEEEEE
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK---FS--G--------HPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~---~~--~--------h~~~v~~l~~~~~~~~l~s~  217 (579)
                      ..........++++|++++++++.   |.|.++++.. +.....   +.  +        ......++.|+|++++++++
T Consensus        82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            443445678899999999999986   8999999987 433222   21  1        12447899999999999988


Q ss_pred             ecCCCeEEEEEcCCCcc-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECC--Ccee--ecccC
Q 008058          218 AVGERYIALWRTDGVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQ--NIEE--LRNTK  291 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~--~~~~~  291 (579)
                      ......|.+|++..... ......... ....-.+-+.|+     |+++++.+.++ ++.|.+|++.  ++..  +....
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~  235 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIS  235 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred             ecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEEeecccCCceeEEEEee
Confidence            76777899999987652 111112222 233334556676     89999888776 7899999887  4321  11111


Q ss_pred             Cc----e-EEeeecccCcccccccchhhhhcccc-ceecCCceEEEEEeCC-CCCceeEEEecCCCCcEEEeecCCccee
Q 008058          292 AT----K-ILSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGL-LLKPSFQKILVNSGEDINLNCSQDGVLL  364 (579)
Q Consensus       292 ~~----~-~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~-~~~~~~~~~~~h~~~v~~~~~s~dg~~l  364 (579)
                      ..    . ........++++++    .++++... +.+     .++..... ......+.+......-..++++|||++|
T Consensus       236 ~~~~~~~~~~~~~~i~ispdg~----~lyvsnr~~~sI-----~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l  306 (345)
T PF10282_consen  236 TLPEGFTGENAPAEIAISPDGR----FLYVSNRGSNSI-----SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL  306 (345)
T ss_dssp             SCETTSCSSSSEEEEEE-TTSS----EEEEEECTTTEE-----EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred             eccccccccCCceeEEEecCCC----EEEEEeccCCEE-----EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence            00    0 00111122466666    55555442 111     11111111 1112222333223346899999999999


Q ss_pred             eccccceecccceeee
Q 008058          365 PMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       365 ~~s~s~d~~~~~w~~~  380 (579)
                      .++...++.+.++++.
T Consensus       307 ~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  307 YVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEecCCCeEEEEEEe
Confidence            6666677888888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.35  E-value=3e-12  Score=121.13  Aligned_cols=230  Identities=16%  Similarity=0.215  Sum_probs=163.4

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+++  .|=.+.++||++- ..-+.|||- .|..++-++.+. .+..+-|                  .|.        
T Consensus       172 tv~Dv--~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~~-~v~rLeF------------------LPy--------  220 (545)
T KOG1272|consen  172 TVRDV--TFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRHI-RVARLEF------------------LPY--------  220 (545)
T ss_pred             hhhhh--hhhcchHHHHhhh-hceEEEecC-CCcEEeehhhcC-chhhhcc------------------cch--------
Confidence            45555  8888888888876 457899995 476666665432 1222222                  221        


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                       --+|++++..|-++.-|+.+|+.+..+.. -.+.+..++-+|-+..+-.|...|+|.+|.....+++..+..|.++|.+
T Consensus       221 -HfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~s  298 (545)
T KOG1272|consen  221 -HFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSS  298 (545)
T ss_pred             -hheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcce
Confidence             34577888889999999999999877754 4578899999998889999999999999999999999999999999999


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC-CCccccceeEE
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD-GVKKQSASCVL  241 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~  241 (579)
                      |++.++|+++++++  ..++|||+++...+.++.. ..+...++||..|  +++.| ....|.+|.=. .+.........
T Consensus       299 iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s~~~~~pYm  374 (545)
T KOG1272|consen  299 IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGSGHGETPYM  374 (545)
T ss_pred             EEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeee-cCCeeeeehhhhcCCCCCCcchh
Confidence            99999999999998  8999999998876666553 4567788998777  33444 45679999532 21100000111


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  277 (579)
                      .. .-...+..+.|.     |-...|-.|...|--.
T Consensus       375 ~H-~~~~~V~~l~Fc-----P~EDvLGIGH~~G~ts  404 (545)
T KOG1272|consen  375 NH-RCGGPVEDLRFC-----PYEDVLGIGHAGGITS  404 (545)
T ss_pred             hh-ccCcccccceec-----cHHHeeeccccCCcee
Confidence            11 112244555565     6666666666655333

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.34  E-value=2.1e-10  Score=104.29  Aligned_cols=234  Identities=12%  Similarity=0.186  Sum_probs=153.2

Q ss_pred             CCcccceEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccc-----------------
Q 008058            3 SSNIRDILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL-----------------   64 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------   64 (579)
                      ++++  .+++|||||+.+. +...|-+|.||.+.+.+... ++-....+....|+++   |..                 
T Consensus        91 ~agl--s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~d---g~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   91 QAGL--SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPD---GQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             CCcc--eeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCC---CceeeeeecccHHHHHHHHh
Confidence            4566  6669999997555 55668999999998776543 2223333344455544   211                 


Q ss_pred             -------------cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE
Q 008058           65 -------------SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC  131 (579)
Q Consensus        65 -------------~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~  131 (579)
                                   ..+.+.+.|.|.         +         ..+-+||..-.-.+..+  .-.-++..+.|+|.+++
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPd---------g---------~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qf  224 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPD---------G---------NWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQF  224 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCC---------C---------cEEEEecchhhheeeee--eeccceeEEEeccccce
Confidence                         122333444443         2         23556664433222222  12357899999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEe--------------------------------------------------------
Q 008058          132 IYSAGADGMVCEIDPLTGSLLGKF--------------------------------------------------------  155 (579)
Q Consensus       132 l~s~~~dg~v~iwd~~~~~~~~~~--------------------------------------------------------  155 (579)
                      ++.|+.|+.+|+.+--+.+.+..|                                                        
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            999999999988654332211111                                                        


Q ss_pred             ----e------cCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          156 ----R------ASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       156 ----~------~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                          +      ...-.+.-++|++|..++++-.    +.+.+||++..+....+. ...+|....|+|....|+.+. +.
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct-g~  382 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT-GK  382 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc-CC
Confidence                1      1122566789999999999976    789999998876654443 567899999999988888876 46


Q ss_pred             CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                      ..+++|......     + ...+.++-.+..+.|.     .+|..++-.+.|.-
T Consensus       383 srLY~W~psg~~-----~-V~vP~~GF~i~~l~W~-----~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  383 SRLYFWAPSGPR-----V-VGVPKKGFNIQKLQWL-----QPGEFIVLCGKDAF  425 (447)
T ss_pred             ceEEEEcCCCce-----E-EecCCCCceeeeEEec-----CCCcEEEEEcCCce
Confidence            679999887643     1 2233445556666776     78888888888763

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=4.5e-09  Score=97.70  Aligned_cols=245  Identities=14%  Similarity=0.168  Sum_probs=155.4

Q ss_pred             EEEccCCCEEEEEeC---CCcEEEEECCC--CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058           11 TSFSPALDYFAICSG---DARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fs~dg~~las~s~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++|+|++++|.++..   +|.|..|.++.  |++...=+..             ..|+   .-   +..+.+++      
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-------------~~g~---~p---~yvsvd~~------   99 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-------------LPGS---PP---CYVSVDED------   99 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-------------cCCC---CC---eEEEECCC------
Confidence            499999999998865   46777776664  5543211100             0011   00   11122222      


Q ss_pred             CcEEEEEEC-CCeEEEEEccC-CeEEEE-ecCCCCCC----------EEEEEEccCCCEEEEEeC-CCcEEEEeCCCCce
Q 008058           86 SSLLVLGTG-GGDVLALAVSA-GQLKWR-LSDCHPGG----------VSAISFATHGSCIYSAGA-DGMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~-~g~i~iwd~~~-~~~~~~-~~~~h~~~----------V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~  151 (579)
                      +++++++.. .|.|.++-++. |..... -...|.++          +....|.|+++++++++. -..|.+|++..|+.
T Consensus       100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L  179 (346)
T COG2706         100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKL  179 (346)
T ss_pred             CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcc
Confidence            666766654 57799999976 332111 01235544          889999999999988863 33699999998764


Q ss_pred             eeE---eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEEeec---------CCCCEEEEEEecCCCEEE
Q 008058          152 LGK---FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQKFSG---------HPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       152 ~~~---~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~-~~~~~~~~---------h~~~v~~l~~~~~~~~l~  215 (579)
                      ...   .-........|.|+|++++..+..   ++|-+|..... ..+..++.         .......|.++|||++|.
T Consensus       180 ~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         180 TPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             ccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            332   112345779999999999999887   89999998763 22222221         134567889999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEEC--CCcee
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG--QNIEE  286 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~--~~~~~  286 (579)
                      ++-.....|.+|.+...... ...+.....+....+...++     ++|++|+++++++ .|.+|..  ++|+.
T Consensus       260 asNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~-----~~g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         260 ASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNIN-----PSGRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             EecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeC-----CCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence            88766678888888765322 11222223334444555565     8999999998854 7888854  44443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=1.6e-09  Score=111.24  Aligned_cols=179  Identities=17%  Similarity=0.175  Sum_probs=120.0

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADG--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~dg--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.++.++..   ..|++||+.+++....  ..+.+.+.+++|+|||+.|+. .+.++  .|++||+.++... .+..+.
T Consensus       201 g~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~  277 (417)
T TIGR02800       201 GQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP  277 (417)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC
Confidence            6667766644   3699999998865422  234566778999999998764 44444  5899998877543 334344


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~---~i~vwd~~~  231 (579)
                      .......|+|||+.|+..+     ..|+++|+.+++. ..+..+...+..+.|+|+|++++.++ .++   .|.+||+.+
T Consensus       278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~-~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH-REGGGFNIAVMDLDG  355 (417)
T ss_pred             CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE-ccCCceEEEEEeCCC
Confidence            4556779999999887654     2788899887654 34444556677889999999998887 454   788889877


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEEC
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYG  281 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~  281 (579)
                      +...   .   +..... .....|+     |+|++|+..+.++   .+++.+.
T Consensus       356 ~~~~---~---l~~~~~-~~~p~~s-----pdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       356 GGER---V---LTDTGL-DESPSFA-----PNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             CCeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEeCCCcEEEEEEEC
Confidence            5422   1   111111 1223455     9999998887754   3455543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.7e-09  Score=110.06  Aligned_cols=184  Identities=11%  Similarity=0.061  Sum_probs=115.4

Q ss_pred             EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC----cEEEEeCCCC---ceeeEeecCC
Q 008058           90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG----MVCEIDPLTG---SLLGKFRAST  159 (579)
Q Consensus        90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg----~v~iwd~~~~---~~~~~~~~~~  159 (579)
                      ++...+|  .|.+.++.+++.....  ...+......|+|||+.|+..+. +|    .+..|++..+   +..+......
T Consensus       203 y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~  280 (428)
T PRK01029        203 YVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF  280 (428)
T ss_pred             EEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC
Confidence            3444444  4888899887653222  23445567899999998876653 22    3444776653   3333333223


Q ss_pred             CCeeEEEEccCCCEEEEEC---C--eEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA---G--QLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g--~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~  231 (579)
                      ......+|+|||+.|+..+   |  .|+++++.. +.....+..+...+....|+|||++|+..+..+  ..|.+||+.+
T Consensus       281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~  360 (428)
T PRK01029        281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT  360 (428)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            3446789999999877654   4  466666642 233445555556677899999999998876433  3699999988


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCCcee
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEE  286 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~  286 (579)
                      ++..      .+...........|+     |||++|+..+.   .+.|+++|+.+++.
T Consensus       361 g~~~------~Lt~~~~~~~~p~wS-----pDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        361 GRDY------QLTTSPENKESPSWA-----IDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             CCeE------EccCCCCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            7643      121222223445666     99998876543   34688888877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=9.4e-10  Score=113.04  Aligned_cols=174  Identities=11%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...+... .+ ..+...+.+..|+|||++|+.++.+   ..|++||+.+++... +..+.+.+.+++|+|||+.
T Consensus       171 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       171 ELQVADYDGANPQ-TI-TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             eEEEEcCCCCCCE-Ee-ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence            4888887644432 33 2456678999999999998887643   479999998886543 3334556678999999997


Q ss_pred             EEEE-C----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058          174 LATA-A----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+.. +    ..|++||+.+++. ..+..+........|+|+|++|+.++..++  .|++|++.+++..      .+...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~  320 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFR  320 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecC
Confidence            7654 3    3699999987754 344455555667899999999887764333  5777787765422      12222


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCce
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~  285 (579)
                      ........|+     |+|++|+.++.++   .|.+||+.++.
T Consensus       321 ~~~~~~~~~s-----pdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       321 GGYNASPSWS-----PDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             CCCccCeEEC-----CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            2223345566     9999999988876   78999987754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.27  E-value=9.7e-09  Score=95.49  Aligned_cols=276  Identities=14%  Similarity=0.123  Sum_probs=168.7

Q ss_pred             EEEEECC----CeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCC--CCceee--Ee
Q 008058           89 LVLGTGG----GDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPL--TGSLLG--KF  155 (579)
Q Consensus        89 l~~~~~~----g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~--~~~~~~--~~  155 (579)
                      +++|+..    .-|++|++.+.  +......-.+.+.++-++|+|++++|+++..+   |.|..|.+.  +|+...  ..
T Consensus         5 ~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~   84 (346)
T COG2706           5 VYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ   84 (346)
T ss_pred             EEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence            4455443    44999998743  32212223567889999999999999998654   667666554  354322  22


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCC----------EEEEEEecCCCEEEEEec
Q 008058          156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGA----------VRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~----------v~~l~~~~~~~~l~s~s~  219 (579)
                      .....+.+.++++++|++++++.   |.|.++-++. |.+  ...+..|.+.          +....|.|++++++++..
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            22334558999999999999998   8999999875 432  2122335554          888999999999999877


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCc----eeecccCCce
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNI----EELRNTKATK  294 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~----~~~~~~~~~~  294 (579)
                      .-..|.+|++..++........ + .++.-.+-+.|.     |++++....++ +++|.+|..+..    +.++.+....
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~-v-~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAE-V-KPGAGPRHIVFH-----PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             CCceEEEEEcccCccccccccc-c-CCCCCcceEEEc-----CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            6678999999977654322211 2 333334556666     99999998887 999999987763    2222221110


Q ss_pred             -----EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC---ceeEEEecCCCCcEEEeecCCcceeec
Q 008058          295 -----ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK---PSFQKILVNSGEDINLNCSQDGVLLPM  366 (579)
Q Consensus       295 -----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~~  366 (579)
                           ...++....+++++    +++++..-     .+ .+.+..=....   ...+...-+...-....++++|++|.+
T Consensus       238 ~dF~g~~~~aaIhis~dGr----FLYasNRg-----~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Lia  307 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGR----FLYASNRG-----HD-SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIA  307 (346)
T ss_pred             cccCCCCceeEEEECCCCC----EEEEecCC-----CC-eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence                 11111112344554    44444331     01 11111101111   111112223334678899999999956


Q ss_pred             cccceecccceeeee
Q 008058          367 SQSLLKSKRGRYVQN  381 (579)
Q Consensus       367 s~s~d~~~~~w~~~~  381 (579)
                      +.-.+.++.+..+.+
T Consensus       308 a~q~sd~i~vf~~d~  322 (346)
T COG2706         308 ANQKSDNITVFERDK  322 (346)
T ss_pred             EccCCCcEEEEEEcC
Confidence            666667788887753

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.8e-09  Score=111.10  Aligned_cols=175  Identities=12%  Similarity=0.062  Sum_probs=119.0

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|...+... .+ ..+...+....|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+|||+.
T Consensus       180 ~l~~~d~~g~~~~-~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAV-TL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCce-EE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence            3778887765543 33 2466789999999999998776543   369999998886543 3323345567899999998


Q ss_pred             EEEE-C--C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058          174 LATA-A--G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~-~--g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++.. .  |  .|++||+.+++. ..+..+........|+|||+.++..+..++  .|+++++.+++..   .+ ..  .
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~l-t~--~  329 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RV-TF--V  329 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Ee-ec--C
Confidence            8743 3  3  799999988764 345556666777899999998887764444  5777787766532   11 11  1


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcC-C--eEEEEECCCcee
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQNIEE  286 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~  286 (579)
                      ........|+     |+|++|+..+.+ |  .|.+||+.+++.
T Consensus       330 ~~~~~~~~~S-----pdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        330 GNYNARPRLS-----ADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             CCCccceEEC-----CCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            1122234566     999999887753 3  588899887754

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.2e-09  Score=106.35  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=91.9

Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      ++++.++....+...+. ..++|.++.|+|+|+-++++.    ..+.+||++. .++..|.  .++-+.+-|+|.|++++
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~~~fnp~g~ii~  327 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNTAFFNPHGNIIL  327 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccceEECCCCCEEE
Confidence            35555554222222222 367999999999999888776    5899999864 4565553  57778999999999999


Q ss_pred             EEecCC--CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEEECCC
Q 008058          216 SSAVGE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIWYGQN  283 (579)
Q Consensus       216 s~s~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~  283 (579)
                      .+|.++  |.+-+||+.+.+.+     .....  ...+...|+     |||.++++++.      |+.++||+...
T Consensus       328 lAGFGNL~G~mEvwDv~n~K~i-----~~~~a--~~tt~~eW~-----PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  328 LAGFGNLPGDMEVWDVPNRKLI-----AKFKA--ANTTVFEWS-----PDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EeecCCCCCceEEEeccchhhc-----ccccc--CCceEEEEc-----CCCcEEEEEeccccEEecCCeEEEEecC
Confidence            998543  68999999986644     23222  233556676     99999999875      78899998743

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=4.5e-09  Score=108.20  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=116.9

Q ss_pred             CcEEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCC--cEEEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADG--MVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg--~v~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.|+..+.+   ..|.+||+.+++... + ....+.+....|+|||+.|+ +.+.+|  .|++||+.+++.. .+..+.
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~  286 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHP  286 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCC
Confidence            6666665533   359999999887642 2 22334456789999999876 444455  6888899877654 344455


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~  232 (579)
                      .......|+|||+.++..+     ..|+++|+.+++... +...........|+|+|++++..+..++  .|.+||+.++
T Consensus       287 ~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        287 AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence            5567789999999877655     368888988776432 2222223345789999999988764343  5888898876


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-C--eEEEEECC
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-G--VCYIWYGQ  282 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~  282 (579)
                      +..   .   +...... ....|+     |+|++++..+.+ |  .+++++..
T Consensus       366 ~~~---~---lt~~~~~-~~p~~s-----pdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        366 SVR---I---LTDTSLD-ESPSVA-----PNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             CEE---E---ccCCCCC-CCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            532   1   1111111 123565     999999887654 3  46666664

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=2.3e-10  Score=102.51  Aligned_cols=198  Identities=14%  Similarity=0.158  Sum_probs=145.2

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++++.|++.|.-++++..+|.+.+-+-.......  .++.|........|+..                          +
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~--------------------------~  177 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK--------------------------E  177 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC--------------------------C
Confidence            5788999999999999999999866555554443  67777666555555433                          2


Q ss_pred             CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCC-CceeeEeecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLT-GSLLGKFRASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~v  162 (579)
                      ++++++|+.||.+..||++ .++.+++-.+-|..+|.++.-+| .+.++++|+.|..|++||.+. ++++..-. -.+.|
T Consensus       178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGV  256 (339)
T KOG0280|consen  178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGV  256 (339)
T ss_pred             CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccce
Confidence            6789999999999999999 56677665567999999999887 577899999999999999984 55554433 34789


Q ss_pred             eEEEEccCCC--EEEEEC-CeEEEEECCCC--e---eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE-EEEcCCC
Q 008058          163 SCMAVSSDGK--MLATAA-GQLKTFNCSDH--K---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA-LWRTDGV  232 (579)
Q Consensus       163 ~~l~~~p~g~--~l~~~~-g~i~vwd~~~~--~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~-vwd~~~~  232 (579)
                      ..+.++|.-.  .++++- +-.+|-+.+.+  +   .....+.|.+-+..-.|......+++++..|+.++ +|-.-++
T Consensus       257 WRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  257 WRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             EEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            9999999533  344444 56677666543  2   34455677777777778555567899888898855 7765444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=2.4e-10  Score=118.85  Aligned_cols=191  Identities=11%  Similarity=0.131  Sum_probs=147.0

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058           14 SPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        14 s~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      .-+...++.+..++.+.+||...+.....+....                ...-++++.|...- +      .-++++|+
T Consensus        96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~~g~s~-~------~~~i~~gs  152 (967)
T KOG0974|consen   96 FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLIIGDSA-E------ELYIASGS  152 (967)
T ss_pred             hhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEEEeccC-c------EEEEEecc
Confidence            3455678888888899999998777665543211                11222333332211 1      56789999


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCC
Q 008058           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGK  172 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~  172 (579)
                      .-+.|.+|++...+... ...+|.+.|.++.|+-||++++++|.|.++++|++.+.+... +.-+|...|..++|+|+  
T Consensus       153 v~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--  229 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--  229 (967)
T ss_pred             ccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence            99999999998444433 347999999999999999999999999999999999987766 66679999999999998  


Q ss_pred             EEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       173 ~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .+++++  -+.++|+.. +..+..+.+|. ..+..++..++....++++ .|+.+++|++...
T Consensus       230 ~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g-~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG-NDSTLKLWDLNGR  290 (967)
T ss_pred             eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeec-cCcchhhhhhhcc
Confidence            788887  799999764 44555777786 4588999998888888887 7999999998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.6e-09  Score=109.65  Aligned_cols=175  Identities=12%  Similarity=0.025  Sum_probs=114.4

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.++|....... .+ ..+...+.+..|+|||+.|+..+. ++  .|++||+.+++... +....+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~~~-~l-~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNEQ-ML-LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCce-Ee-ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence            4777777655432 22 245678899999999999877653 33  58899998876533 2222334457899999998


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecC
Q 008058          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+...   |  .|+++|+.+++. ..+..+........|+|||++++..+..++  .|+++|+.+++..   . .+.  .
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~---~-Lt~--~  348 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS---R-LTF--E  348 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE---E-Eec--C
Confidence            87643   3  689999987754 445556666778899999999887764444  4666677665432   1 111  1


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECCCcee
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIEE  286 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~  286 (579)
                      ........|+     |||++|+..+. ++  .|.++|+.+++.
T Consensus       349 g~~~~~~~~S-----pDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        349 GEQNLGGSIT-----PDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             CCCCcCeeEC-----CCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            1111224566     99999888765 34  456678777653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=5.1e-09  Score=107.47  Aligned_cols=181  Identities=14%  Similarity=0.081  Sum_probs=113.3

Q ss_pred             CcEEEEEEC-CC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCCc--EEEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLGTG-GG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGM--VCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~-~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~dg~--v~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.|+..+. ++  .|++||+.+++.....  ...+......|+|||+.|+. .+.+|.  |+++|+.+++.. .+..+.
T Consensus       229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~  305 (448)
T PRK04792        229 GRKLAYVSFENRKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHR  305 (448)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCC
Confidence            666666543 33  4999999888753221  12233457899999998765 455664  888898877643 344445


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~  232 (579)
                      ......+|+|||+.++..+     ..|+++|+.+++... +..+........|+|||++++..+..++  .|.++|+.++
T Consensus       306 ~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        306 AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence            5567889999999887655     368888888776433 2222223345789999999888764444  4555677666


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECC
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQ  282 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~  282 (579)
                      +..   .   +..... .....|+     |+|++|+..+. +|  .+++++.+
T Consensus       385 ~~~---~---lt~~~~-d~~ps~s-----pdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        385 AMQ---V---LTSTRL-DESPSVA-----PNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CeE---E---ccCCCC-CCCceEC-----CCCCEEEEEEecCCceEEEEEECC
Confidence            432   1   111111 1112455     99998877665 33  36677763

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.22  E-value=4.6e-11  Score=119.25  Aligned_cols=203  Identities=12%  Similarity=0.147  Sum_probs=139.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +++.++  ..+|.|+-+|.++.-|. .+-|+... ....-+. |.                ....+....|.+-..    
T Consensus        25 ~~~~a~--si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~----------------tpw~vad~qws~h~a----   80 (1081)
T KOG0309|consen   25 GGFNAV--SINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HI----------------TPWQVADVQWSPHPA----   80 (1081)
T ss_pred             Ccccce--eeccccchhhhhhhcCe-EEEeccCCCCCceeee-cc----------------CcchhcceecccCCC----
Confidence            455444  78899998888887764 45565432 2211111 00                011223344544321    


Q ss_pred             ccCCcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCC-ceeeEeecC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTG-SLLGKFRAS  158 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~-~~~~~~~~~  158 (579)
                         ..+-++.+...+-.+|++..  .+.+.-++.+|+..|+++.|+|+.. .+++++.|..|..||+++- ..+..+..-
T Consensus        81 ---~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen   81 ---KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             ---CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence               34556677777788899864  3344445578999999999999654 5899999999999999875 455555554


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC-CeEEEEECCCC-eeeEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008058          159 TKGISCMAVSS-DGKMLATAA-GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~-g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~-~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ......+.|+- ++..+++.. +.|.+||.+.| .++..+++|...|.++.|..- ...+.+++ .|++|+.||......
T Consensus       158 ~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-~d~tvkfw~y~kSt~  236 (1081)
T KOG0309|consen  158 RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-NDGTVKFWDYSKSTT  236 (1081)
T ss_pred             cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-CCCceeeeccccccc
Confidence            55667889987 455666655 79999999975 578889999999999998753 22456665 799999999877653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.22  E-value=1.3e-09  Score=99.82  Aligned_cols=232  Identities=19%  Similarity=0.278  Sum_probs=152.9

Q ss_pred             cCCCEEEEEeCCCcEEEEE-CCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058           15 PALDYFAICSGDARIKIWD-TLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      |-.+-+.+.+.|.++|||- .+.++.-..+..                 .....++++.....         ...|++|-
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----------------~mP~~~~~~~y~~e---------~~~L~vg~   87 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----------------YMPSPCSAMEYVSE---------SRRLYVGQ   87 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhhh-----------------hCCCCceEeeeecc---------ceEEEEEE
Confidence            3334578899999999994 445554333321                 11123344444433         56799999


Q ss_pred             CCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           94 GGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        94 ~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      .+|++.-+.+...   ....+....|...|..+.|+.....+++++.|..+.---.+.+..+..+.- ....+++.+.-.
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~  166 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL  166 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE
Confidence            9999998887642   222334467999999999999899999999998875545555544333221 111122222211


Q ss_pred             CCEEEEEC--CeEEEEEC--CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          171 GKMLATAA--GQLKTFNC--SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                        +...|.  |.|.+-.+  ..-.++.++.+|.+.+.++.|.|....++++. .|..+.+||+...+..    ...+..+
T Consensus       167 --~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~-~d~~vi~wdigg~~g~----~~el~gh  239 (404)
T KOG1409|consen  167 --YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGA-SDHSVIMWDIGGRKGT----AYELQGH  239 (404)
T ss_pred             --EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecc-ccCceEEEeccCCcce----eeeeccc
Confidence              444554  55444433  34567889999999999999999999999987 6999999999877644    2233333


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ...+..++..     +--+.+.+++.||.|.+|+.+..+
T Consensus       240 ~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  240 NDKVQALSYA-----QHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhhhhh-----hhheeeeeccCCCeEEEEecccee
Confidence            3344444444     556889999999999999986554

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=3.5e-10  Score=110.11  Aligned_cols=190  Identities=15%  Similarity=0.160  Sum_probs=142.5

Q ss_pred             EEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +++. +..+++.|+ ...|+-++++.|+.+..|....+.++.+..++.                           ..+|+
T Consensus       140 ~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------------------------hgLla  191 (703)
T KOG2321|consen  140 KYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEE---------------------------HGLLA  191 (703)
T ss_pred             cccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCc---------------------------cceEE
Confidence            5543 334444444 446888899999988877755554444433333                           67899


Q ss_pred             EEECCCeEEEEEccCCeEEEEec-----CCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLS-----DCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~-----~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      +|+.+|.|-.||..+...+..+.     ..|.+     .|+++.|+.+|-.+++|..+|.|.+||+++.+++..- .|..
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~  270 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGY  270 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCC
Confidence            99999999999999876554442     12333     3999999999999999999999999999988876553 3443


Q ss_pred             --CeeEEEEccC--CCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          161 --GISCMAVSSD--GKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       161 --~v~~l~~~p~--g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                        +|..+.|.+.  ++.+++.. ..++|||-.+|+....+. ....++.+++-|++-.++++- ++..+..|=+...
T Consensus       271 e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~An-e~~~m~~yyiP~L  345 (703)
T KOG2321|consen  271 ELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYIPSL  345 (703)
T ss_pred             ccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEec-CCCcceeEEcccc
Confidence              8999999775  67888888 899999999999988876 445699999999988888875 6776766665543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=4.3e-09  Score=107.12  Aligned_cols=196  Identities=16%  Similarity=0.149  Sum_probs=119.3

Q ss_pred             eEEEEccCCCE--EEEEe-CCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDY--FAICS-GDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~--las~s-~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++-+|||||+.  ++..+ .+|  .|.+.++.+|+... +....+.....                  .|.|.       
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p------------------~wSPD-------  241 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP------------------TFSPR-------  241 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce------------------EECCC-------
Confidence            45589999975  33233 333  57777888776432 22122222223                  34332       


Q ss_pred             cCCcEEEEEEC-CC--eEE--EEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEE--eCCC-Ccee
Q 008058           84 LGSSLLVLGTG-GG--DVL--ALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEI--DPLT-GSLL  152 (579)
Q Consensus        84 ~~~~~l~~~~~-~g--~i~--iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iw--d~~~-~~~~  152 (579)
                        ++.|+..+. +|  .+.  .|++..+  .....+..++.+.....+|+|||+.|+..+ .+|...+|  ++.. +...
T Consensus       242 --G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        242 --KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             --CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence              555665543 33  344  4676653  122233333334456789999999877665 46654444  5432 2334


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEE
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIA  225 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~  225 (579)
                      ..+..+...+....|+|||+.|+...     ..|++||+.+++.. .+......+....|+|||+.|+..+..  ...|+
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            44444455677899999999888764     47999999888654 344334466789999999988765532  34688


Q ss_pred             EEEcCCCc
Q 008058          226 LWRTDGVK  233 (579)
Q Consensus       226 vwd~~~~~  233 (579)
                      +|++.+++
T Consensus       399 ~vdl~~g~  406 (428)
T PRK01029        399 LISLITKK  406 (428)
T ss_pred             EEECCCCC
Confidence            88887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.20  E-value=2.1e-08  Score=101.31  Aligned_cols=224  Identities=15%  Similarity=0.134  Sum_probs=142.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+..+++++.+|.|..+|..+|+.+..++........     +            .    .        .+..+++++.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~-----p------------~----v--------~~~~v~v~~~~  114 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGG-----V------------G----A--------DGGLVFVGTEK  114 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccc-----e------------E----E--------cCCEEEEEcCC
Confidence            4668888888999999999999988776533210000     0            0    0        15678899999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~  170 (579)
                      |.+..+|..+|+.+++....  +.+.+.-.. .+..++.++.+|.++.||..+|+.+..+......+     .+.... +
T Consensus       115 g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~  190 (377)
T TIGR03300       115 GEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D  190 (377)
T ss_pred             CEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C
Confidence            99999999999998776422  223221111 34567778889999999999999887765433211     111222 3


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCCC----C------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPG----A------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~----~------v-~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      + .++.+.  +.+..+|.++|+.+.+......    .      + ....+  .+..++.++ .++.+..||..+++..  
T Consensus       191 ~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~~~--  264 (377)
T TIGR03300       191 G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGRVL--  264 (377)
T ss_pred             C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCcEE--
Confidence            3 455554  8999999999987654321100    0      0 11112  234566665 6899999999888643  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                         .......  .....       ..+..+++++.||.++.+|..+++.+...
T Consensus       265 ---W~~~~~~--~~~p~-------~~~~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       265 ---WKRDASS--YQGPA-------VDDNRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             ---EeeccCC--ccCce-------EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence               2222111  11111       24577888889999999999999877554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=1.7e-08  Score=97.46  Aligned_cols=330  Identities=12%  Similarity=0.050  Sum_probs=185.3

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      |+  ..++|||.|.+|++.... .|.+|.-..+..+..+.  ...+....|++.   +.     --..|....-.   - 
T Consensus        34 p~--~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~---~k-----YL~tw~~~pi~---~-   96 (561)
T COG5354          34 PV--AYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPN---EK-----YLVTWSREPII---E-   96 (561)
T ss_pred             ch--hheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcc---cc-----eeeeeccCCcc---C-
Confidence            55  345999999999988765 48899877766555443  222333444433   10     01122211000   0 


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC--EE-EEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeecC-C
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG--VS-AISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRAS-T  159 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~-~  159 (579)
                      ...-..=-+.+..+.+||+.+|..+..+. +...+  .+ -+.|+-+.++++-- ....++++++ ++... .-+..- .
T Consensus        97 pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~  173 (561)
T COG5354          97 PEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP  173 (561)
T ss_pred             hhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence            00000111223369999999999987763 33333  44 67888888776544 3345899997 33221 112211 3


Q ss_pred             CCeeEEEEccCCC--EEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec----------C
Q 008058          160 KGISCMAVSSDGK--MLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV----------G  220 (579)
Q Consensus       160 ~~v~~l~~~p~g~--~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~----------~  220 (579)
                      ..|....|+|.|+  .|+.=.       +.+++|.+..+..+.+-.-..-.=..+.|.+.|++++.-..          +
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            4788889999643  344321       68999999877665543322223346788888887765321          2


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEee
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                      ...++++++......     ... .....+...+|.     |.++.+++.+  .+-.+.+||++..-...-.+..+..  
T Consensus       254 esnLyl~~~~e~~i~-----V~~-~~~~pVhdf~W~-----p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT--  320 (561)
T COG5354         254 ESNLYLLRITERSIP-----VEK-DLKDPVHDFTWE-----PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNT--  320 (561)
T ss_pred             cceEEEEeecccccc-----eec-cccccceeeeec-----ccCCceeEEecccccceeecccccceEEecCCccccc--
Confidence            345788888744322     111 323445566676     7777766655  5889999998766222222212111  


Q ss_pred             ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc--c----cee
Q 008058          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ--S----LLK  372 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~--s----~d~  372 (579)
                        ..|+|..+    .|+.+.++..    .|.+.+..-...+.+...+.+.  ...-+.|||||+|+ .+.  |    .|+
T Consensus       321 --~~fsp~~r----~il~agF~nl----~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~-~~~~ts~k~~~Dn  387 (561)
T COG5354         321 --IFFSPHER----YILFAGFDNL----QGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY-DTDTTSEKLRVDN  387 (561)
T ss_pred             --ccccCccc----EEEEecCCcc----ccceEEeccCCceEEEEEeecC--CceEeeccCCceEE-EecCCCcccccCc
Confidence              23677777    7888777652    2333333222222222222222  24556699999987 332  2    389


Q ss_pred             cccceeee
Q 008058          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+++|++.
T Consensus       388 ~i~l~~v~  395 (561)
T COG5354         388 SIKLWDVY  395 (561)
T ss_pred             ceEEEEec
Confidence            99999995

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.17  E-value=7.4e-08  Score=93.36  Aligned_cols=266  Identities=15%  Similarity=0.068  Sum_probs=149.6

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----------CCcEEEEeCCCCceeeEeecCCC-----
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----------DGMVCEIDPLTGSLLGKFRASTK-----  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~-----  160 (579)
                      +.|.+.|..+++.+..+..+....  .+ ++|||+.++.+..          +..|.+||..+++.+..+.....     
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            889999999999988876554433  34 9999999887765          78999999999999988774222     


Q ss_pred             --CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          161 --GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 --~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                        ....++++|||+++++..    +.|.+.|+.+++.+.++.-.. . ..+--.++..+++.|  .||......+.....
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~-~~vy~t~e~~~~~~~--~Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-C-YHIFPTANDTFFMHC--RDGSLAKVGYGTKGN  179 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-C-cEEEEecCCccEEEe--ecCceEEEEecCCCc
Confidence              334789999999999876    799999999999998886422 1 122222233333333  255554444433221


Q ss_pred             ccceeEEeeecC-ceee-EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce-----eecccCCceE--Eee----ecc
Q 008058          235 QSASCVLAMEHP-AVFM-DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE-----ELRNTKATKI--LSS----SED  301 (579)
Q Consensus       235 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~--~~~----~~~  301 (579)
                      .. ......-+. ...+ .--.|.    ..+|+++.+..+ |+|++.|+....     .+........  .+.    ...
T Consensus       180 ~~-~~~~~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       180 PK-IKPTEVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             eE-EeeeeeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence            10 000111011 0000 000111    038888877776 999999954432     2211100000  000    001


Q ss_pred             cCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccce
Q 008058          302 VNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGR  377 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w  377 (579)
                      .+.++++    .++.+...   +.=......+++.+-.. ......+.. ...++.+++||||+ +|.++...++.+.+-
T Consensus       254 a~~~dg~----~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsVi  327 (352)
T TIGR02658       254 AYHRARD----RIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIF  327 (352)
T ss_pred             EEcCCCC----EEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence            1233333    22221111   11011123566655322 233333332 22689999999999 774455457777777


Q ss_pred             eee
Q 008058          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      |+.
T Consensus       328 D~~  330 (352)
T TIGR02658       328 DAE  330 (352)
T ss_pred             ECc
Confidence            764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.17  E-value=8e-10  Score=115.10  Aligned_cols=185  Identities=12%  Similarity=0.133  Sum_probs=144.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ...+++++.+..+.+||...+.....+.......   ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            5679999999999999999887765553221111   2233456667789999999999999987333333588999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .++.++.||+++++.+  .++++|++.+.+... +.-+|...|..+.|.|+  .+++++ .|.+.++|+.+..+..    
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g-edctcrvW~~~~~~l~----  251 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG-EDCTCRVWGVNGTQLE----  251 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec-cceEEEEEecccceeh----
Confidence            9999999999999998  899999999987765 66789999999999998  788887 8999999976654422    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                       .-..|....+......     ++...+++++.||.+++|+...
T Consensus       252 -~y~~h~g~~iw~~~~~-----~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  252 -VYDEHSGKGIWKIAVP-----IGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -hhhhhhhcceeEEEEc-----CCceEEEeeccCcchhhhhhhc
Confidence             1223555555555565     6778889999999999999654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.16  E-value=1.9e-07  Score=90.57  Aligned_cols=224  Identities=13%  Similarity=0.099  Sum_probs=149.9

Q ss_pred             CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC----------CC
Q 008058           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG----------GG   96 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~----------~g   96 (579)
                      ++|.|.|..+++.+..+.....+..  .++++                           ++.++++..          ++
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~~spD---------------------------g~~lyva~~~~~R~~~G~~~d   77 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP--VVASD---------------------------GSFFAHASTVYSRIARGKRTD   77 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce--eECCC---------------------------CCEEEEEeccccccccCCCCC
Confidence            8999999999999888864332222  14433                           566666665          67


Q ss_pred             eEEEEEccCCeEEEEecCCC------CCCEEEEEEccCCCEEEEEe-C-CCcEEEEeCCCCceeeEeecCC---------
Q 008058           97 DVLALAVSAGQLKWRLSDCH------PGGVSAISFATHGSCIYSAG-A-DGMVCEIDPLTGSLLGKFRAST---------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h------~~~V~~l~~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~---------  159 (579)
                      .|.+||+.+.+.+.++..+-      ......++++|||++++... . +..|.+.|+.+++.+..+....         
T Consensus        78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e  157 (352)
T TIGR02658        78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN  157 (352)
T ss_pred             EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence            79999999999987775321      12345889999999998776 3 7899999999887665443110         


Q ss_pred             ---------C-------------CeeEE--------------EEcc-CCCEEEEEC-CeEEEEECCCC-----eeeEEee
Q 008058          160 ---------K-------------GISCM--------------AVSS-DGKMLATAA-GQLKTFNCSDH-----KKMQKFS  196 (579)
Q Consensus       160 ---------~-------------~v~~l--------------~~~p-~g~~l~~~~-g~i~vwd~~~~-----~~~~~~~  196 (579)
                               +             .....              .|.+ +|+++.... |.|++.|+...     +.+..+.
T Consensus       158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~  237 (352)
T TIGR02658       158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFT  237 (352)
T ss_pred             CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecc
Confidence                     0             01111              1223 777777776 99999996432     2233222


Q ss_pred             c-------CCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcc
Q 008058          197 G-------HPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGV  260 (579)
Q Consensus       197 ~-------h~~~v~~l~~~~~~~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                      .       ..+.+.-++++|+++.++....         ..+.|.++|..+.+..     ..+.-. .....+.++    
T Consensus       238 ~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----~~i~vG-~~~~~iavS----  307 (352)
T TIGR02658       238 EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----RKIELG-HEIDSINVS----  307 (352)
T ss_pred             ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----EEEeCC-CceeeEEEC----
Confidence            1       2233445999999998887431         1257999999888744     233222 234455676    


Q ss_pred             cCCCc-EEEEEE-cCCeEEEEECCCceeeccc
Q 008058          261 DDAGL-YVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       261 ~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                       ||++ +|++.+ .++.|.++|..+++.++..
T Consensus       308 -~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       308 -QDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             -CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             9999 888777 5789999999999988776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.14  E-value=2e-08  Score=97.00  Aligned_cols=308  Identities=14%  Similarity=0.149  Sum_probs=185.5

Q ss_pred             CcccceEEEEccCCCEEEEEeCCC---------------cEEEEECCCCeEEEEeccccccccccccccccccccccCcc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDA---------------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDY   68 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (579)
                      ..|+.+  .|||+++||.+=+..+               .+.|||+.+|..+..|.....+               ....
T Consensus        72 ~~V~~~--~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~---------------~~~W  134 (561)
T COG5354          72 PDVKYL--DFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP---------------YLGW  134 (561)
T ss_pred             CCceec--ccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc---------------cccc
Confidence            346555  8999999999865433               4899999999999888754432               1122


Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCE--EEE-----EeCCCc
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSC--IYS-----AGADGM  140 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~--l~s-----~~~dg~  140 (579)
                      ..+.|...+         .+ ++---...++++++ ++... ..+..-....|....|+|.++.  |+.     .+.+++
T Consensus       135 p~~k~s~~D---------~y-~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~  203 (561)
T COG5354         135 PVLKFSIDD---------KY-VARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAM  203 (561)
T ss_pred             ceeeeeecc---------hh-hhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcE
Confidence            234444432         11 22224556899997 44321 1111112357889999996543  333     357889


Q ss_pred             EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE------C-------CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058          141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA------A-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~------~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~  207 (579)
                      +++|.+..++.+.+-.-....=..+.|++.|+++++-      +       ..+++++++.. .+....+-.++|...+|
T Consensus       204 ~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W  282 (561)
T COG5354         204 VRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTW  282 (561)
T ss_pred             EEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeee
Confidence            9999998776665422222223578899999887642      1       47889988743 33333366899999999


Q ss_pred             ecCCCEEEEEe-cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCC
Q 008058          208 SDNGKYVLSSA-VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN  283 (579)
Q Consensus       208 ~~~~~~l~s~s-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~  283 (579)
                      .|.++.+++.+ ..+-.+.++|++..-        ....+...-....|+     |.+++++.++-   .|.+.+||...
T Consensus       283 ~p~S~~F~vi~g~~pa~~s~~~lr~Nl--------~~~~Pe~~rNT~~fs-----p~~r~il~agF~nl~gni~i~~~~~  349 (561)
T COG5354         283 EPLSSRFAVISGYMPASVSVFDLRGNL--------RFYFPEQKRNTIFFS-----PHERYILFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             cccCCceeEEecccccceeecccccce--------EEecCCccccccccc-----CcccEEEEecCCccccceEEeccCC
Confidence            99988776665 567889999998762        122333333455666     89999998766   46899999766


Q ss_pred             ceeec-ccCCceEEeeecccCcccccccchhhhhccccceecCC-ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008058          284 IEELR-NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA-SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       284 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      .-.+. ......-..+   .++|+++    ++.++...-..+.. ...++-.+|...           ...+.+.|.|.|
T Consensus       350 rf~~~~~~~~~n~s~~---~wspd~q----F~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~  411 (561)
T COG5354         350 RFKVAGAFNGLNTSYC---DWSPDGQ----FYDTDTTSEKLRVDNSIKLWDVYGAKV-----------FELTNITWDPSG  411 (561)
T ss_pred             ceEEEEEeecCCceEe---eccCCce----EEEecCCCcccccCcceEEEEecCchh-----------hhhhhccccCCc
Confidence            54433 3333222222   1566655    44443322111211 112333333221           256778889989


Q ss_pred             ceeecccccee
Q 008058          362 VLLPMSQSLLK  372 (579)
Q Consensus       362 ~~l~~s~s~d~  372 (579)
                      ++. .+.|.+.
T Consensus       412 ~~~-ttsSs~~  421 (561)
T COG5354         412 QYV-TTSSSCP  421 (561)
T ss_pred             ccc-eeeccCC
Confidence            887 4444343

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.14  E-value=7.5e-09  Score=101.74  Aligned_cols=190  Identities=13%  Similarity=0.145  Sum_probs=148.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------c--------------CCCEEEEEeCCCcEEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------T--------------HGSCIYSAGADGMVCE  143 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~--------------~~~~l~s~~~dg~v~i  143 (579)
                      ..+++..+.||.+++|+...++....+..-  -++..++..|.      |              +-..++-|...|.|.+
T Consensus         5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~   84 (541)
T KOG4547|consen    5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL   84 (541)
T ss_pred             hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence            678999999999999999999876555321  12334444442      1              2235777888999999


Q ss_pred             EeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058          144 IDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       144 wd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      |++..|+...++.  .|.+.|.++.++.+-..|.+++  +.+..|+....+.++.+.+....+.+++++|||..+++++ 
T Consensus        85 ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-  163 (541)
T KOG4547|consen   85 YSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-  163 (541)
T ss_pred             EEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-
Confidence            9999999888776  5788999999999989999988  7999999999999999999999999999999999998864 


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  283 (579)
                        +.|++||+.+.+     .+..+.++...++++.|....---.|.+++++. .+.-+.+|-.+.
T Consensus       164 --~~ik~~~~~~ke-----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 --RQIKVLDIETKE-----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --ceEEEEEccCce-----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              689999999987     457788999999998887220001266666654 466777885543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=6.9e-08  Score=108.34  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=148.9

Q ss_pred             EEEccC-CCEEEEEeCCCcEEEEECCCCeEEEEecc-ccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           11 TSFSPA-LDYFAICSGDARIKIWDTLKGQVQTEFAD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fs~d-g~~las~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++ |+.+++-+.+++|++||.. |..+..+-+ .......-.+    ....+. ....+++.+.         ++.
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~----~~a~f~-~P~GIavd~~---------gn~  637 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSF----EDATFN-RPQGLAYNAK---------KNL  637 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCch----hccccC-CCcEEEEeCC---------CCE
Confidence            378875 5566666678899999975 554443322 1000000000    000111 1123444332         455


Q ss_pred             EEEEEC-CCeEEEEEccCCeEEEEecC-CC---------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc
Q 008058           89 LVLGTG-GGDVLALAVSAGQLKWRLSD-CH---------------PGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        89 l~~~~~-~g~i~iwd~~~~~~~~~~~~-~h---------------~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~  150 (579)
                      |+++.. ++.|+.+|..++... .+.. +.               -...++++|+| ++..+++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            566554 456999998877643 2211 00               12346899999 45556666778999999987764


Q ss_pred             eeeEeecC---------------CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-------------cC-
Q 008058          151 LLGKFRAS---------------TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-------------GH-  198 (579)
Q Consensus       151 ~~~~~~~~---------------~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~-------------~h-  198 (579)
                      .. .+.+.               -.....|+++|+|+.|++++   +.|++||+.++.......             .+ 
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 22211               12456799999998666665   799999998765321110             00 


Q ss_pred             -------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----------cCceeeEeEEecCCcc
Q 008058          199 -------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGV  260 (579)
Q Consensus       199 -------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  260 (579)
                             -.....++++++|..+++-. .++.|++||..++...   .+....           ..-.....++++    
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~---tiaG~G~~G~~dG~~~~a~l~~P~GIavd----  867 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVT---TLAGTGKAGFKDGKALKAQLSEPAGLALG----  867 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEE---EEeccCCcCCCCCcccccccCCceEEEEe----
Confidence                   11235889999998766665 7999999999876532   111000           001123445665    


Q ss_pred             cCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          261 DDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       261 ~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                       ++|+.+++-+.+++|++||+.+++.
T Consensus       868 -~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        868 -ENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             -CCCCEEEEECCCCEEEEEECCCCcc
Confidence             8999888888899999999988764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.10  E-value=2.6e-08  Score=89.68  Aligned_cols=263  Identities=11%  Similarity=0.037  Sum_probs=156.5

Q ss_pred             CCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEEEEeCCCCceeeEeecCCC------C
Q 008058           94 GGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVCEIDPLTGSLLGKFRASTK------G  161 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~------~  161 (579)
                      ..|.+.+|++...+...  .+....++.+..+.|.-   +|. .++-+..+|.|.++..........+++-..      .
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~  123 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE  123 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence            34678888887655432  12222345677777753   444 466677889999987665444444443221      2


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..++.|++.+..++++.  |.+.+-+......  ++++++|.-+.....|+....-++..|++|+.+..||++..+.   
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence            45788999998888887  8888666555443  4478999999999999865554444444899999999994431   


Q ss_pred             eeEEe--eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC-ceeecccC--CceEEeeecccCcccccccch
Q 008058          238 SCVLA--MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN-IEELRNTK--ATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       238 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  312 (579)
                       .++.  ..|...++++.+..     |.+.+|++|+.|-.|++||.++ ++++...+  +...++.-    .|...  ..
T Consensus       201 -~i~~n~kvH~~GV~SI~ss~-----~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~----~p~~~--~~  268 (339)
T KOG0280|consen  201 -FIWHNSKVHTSGVVSIYSSP-----PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKH----HPEIF--HR  268 (339)
T ss_pred             -eeeecceeeecceEEEecCC-----CCCceEEEeccccceeeeehhcccCccccCccccceEEEEe----cchhh--hH
Confidence             2232  33566666666555     7889999999999999999885 45544322  22222221    12111  01


Q ss_pred             hhhhccccceecCCceEEEEEeCCC---CCceeEEEecCCCCcEEEeecCCcceeecccc-ceeccc-ceee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLL---LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-LLKSKR-GRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-~d~~~~-~w~~  379 (579)
                      .++++...|       ..++.....   ....+.....|.+-+..-.|.....++ +|+| .|+.++ +|-.
T Consensus       269 lL~~CMh~G-------~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l-ATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  269 LLAACMHNG-------AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL-ATCSFYDKKIRQLWLH  332 (339)
T ss_pred             HHHHHHhcC-------ceEEEecccccchheeeeccccccceeecccccccccee-eeeeccccceeeeeee
Confidence            233333332       111111111   122444555676655555564444566 7776 466645 6743

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.3e-08  Score=99.42  Aligned_cols=197  Identities=19%  Similarity=0.345  Sum_probs=134.2

Q ss_pred             CcccceEEEEccCCC--EEEE-----EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058            4 SNIRDILTSFSPALD--YFAI-----CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~--~las-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.|..+  ++||.+.  ++|+     .|.-+.|+||....+....       .+...        .....+...+.|...
T Consensus       166 ~~i~~f--~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-------~~a~k--------sFFkadkvqm~WN~~  228 (566)
T KOG2315|consen  166 SGITML--SLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-------PVANK--------SFFKADKVQMKWNKL  228 (566)
T ss_pred             cceeeE--EecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-------hhhhc--------cccccceeEEEeccC
Confidence            445444  7777643  5553     3445678888765221111       11111        111223345667654


Q ss_pred             ccccccccCCcEEEEEECC-----------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE--eCCCcEEE
Q 008058           77 DRKKKRKLGSSLLVLGTGG-----------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA--GADGMVCE  143 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~-----------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~--~~dg~v~i  143 (579)
                      .        ..+|++++.|           .+++++++....+...+  ...++|.++.|+|+|+-|+.+  -.--.+.+
T Consensus       229 g--------t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  229 G--------TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             C--------ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence            3        4455555432           24888888855555444  356899999999999876554  45678999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058          144 IDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ||++ +..+..|.  .++-+++-|+|.|++++.++     |.+-+||+.+.+++.++..-.  -+-+.|+|||++|+++.
T Consensus       299 fnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  299 FNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             EcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEe
Confidence            9975 77776664  56678999999999999887     799999999988888887544  35579999999999987


Q ss_pred             cC-----CCeEEEEEcCCC
Q 008058          219 VG-----ERYIALWRTDGV  232 (579)
Q Consensus       219 ~~-----d~~i~vwd~~~~  232 (579)
                      ..     |+.++||+....
T Consensus       374 TaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  374 TAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccccEEecCCeEEEEecCc
Confidence            53     678999998764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.10  E-value=2.7e-08  Score=100.64  Aligned_cols=226  Identities=12%  Similarity=0.118  Sum_probs=140.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..++.++.+|.+..+|..+|+..........     .++.+            +.            .+..+++++.+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~~~p------------~v------------~~~~v~v~~~~  154 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-----VLSPP------------LV------------ANGLVVVRTND  154 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-----eecCC------------EE------------ECCEEEEECCC
Confidence            466777888899999999999998776542211     00100            00            14567888899


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCE-----EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC----C-----
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGV-----SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----G-----  161 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V-----~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~-----  161 (579)
                      |.+..||..+|+.+++.... ...+     .+...  .+..++.+..+|.+..+|+.+|+.+........    .     
T Consensus       155 g~l~a~d~~tG~~~W~~~~~-~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~  231 (377)
T TIGR03300       155 GRLTALDAATGERLWTYSRV-TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV  231 (377)
T ss_pred             CeEEEEEcCCCceeeEEccC-CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence            99999999999988776321 1111     11111  234678888899999999999987655331110    0     


Q ss_pred             -e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          162 -I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 -v-~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                       + .+..+. ++..++++. |.++.||.++++.+..... . .......  ++..++.++ .||.+..+|..+++..   
T Consensus       232 ~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~---  302 (377)
T TIGR03300       232 DVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTD-ADGVVVALDRRSGSEL---  302 (377)
T ss_pred             ccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEEC-CCCeEEEEECCCCcEE---
Confidence             0 111121 344444443 8999999999987765542 1 1122222  345666665 6999999999888643   


Q ss_pred             eEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          239 CVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                        ..... .........       ..+..|++++.+|.++++|..+++.+...+
T Consensus       303 --W~~~~~~~~~~ssp~-------i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       303 --WKNDELKYRQLTAPA-------VVGGYLVVGDFEGYLHWLSREDGSFVARLK  347 (377)
T ss_pred             --EccccccCCccccCE-------EECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence              22211 111111111       135688999999999999999998876554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.08  E-value=6e-10  Score=121.51  Aligned_cols=181  Identities=21%  Similarity=0.353  Sum_probs=138.2

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +.-+|...+.+||+.||.|++|.+..++.+..++... ..+....|+..                           |+.+
T Consensus      2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q---------------------------Gnk~ 2266 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ---------------------------GNKF 2266 (2439)
T ss_pred             ecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc---------------------------CCce
Confidence            3556777899999999999999999998887776322 23333444433                           7778


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCC-C--ceeeEeecCCCCee
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPLT-G--SLLGKFRASTKGIS  163 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~-~--~~~~~~~~~~~~v~  163 (579)
                      .++..||.+.+|.+.. +.. .-.+.|+....++.|-.  ..+++++   .++.+.+||..- +  ..+.  .+|.+.++
T Consensus      2267 ~i~d~dg~l~l~q~~p-k~~-~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP-KPY-TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred             eeeccCCceeecccCC-cce-eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCce
Confidence            9999999999999883 222 23357888999999965  5566654   578899999642 2  2333  78999999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ++++-|..+.+++|+  |.|++||++..+.+.+++.         ++ ...++++++ ..|.++||++......
T Consensus      2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~s-s~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGS-SEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccC-cccceEEEEccccchh
Confidence            999999999999999  9999999998887776654         33 455777776 5999999999876533

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=3.8e-08  Score=95.88  Aligned_cols=319  Identities=11%  Similarity=0.053  Sum_probs=182.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      -+.|||-|.||+|-..-| |.+|--.+....+.|. | ..+..+.|+|.                           ..+|
T Consensus       215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~---------------------------EkYL  264 (698)
T KOG2314|consen  215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPN---------------------------EKYL  264 (698)
T ss_pred             eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCc---------------------------cceE
Confidence            459999999999998776 7799655444444442 1 12222333333                           3444


Q ss_pred             EEEE----------CC-CeEEEEEccCCeEEEEecC--CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           90 VLGT----------GG-GDVLALAVSAGQLKWRLSD--CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        90 ~~~~----------~~-g~i~iwd~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                      ++-+          .+ ..+.|||+.+|.....+..  +....-.-+.||.|+++++.-..| .|.||+..+..++..-.
T Consensus       265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKS  343 (698)
T ss_pred             EEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccc
Confidence            4433          22 3499999999988655532  222222346899999999887664 58899976644332222


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------C
Q 008058          157 ASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------G  220 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------~  220 (579)
                      -....|....|+|.+++||-=.       ..+.+-.+.+++.+++-.-|.-.=..+-|-.+|.+|+.--.         .
T Consensus       344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~  423 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ  423 (698)
T ss_pred             cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence            2345788899999999988644       47788888888877765544433334567677888765421         0


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCC-ceeecccCCceEE
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQN-IEELRNTKATKIL  296 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~-~~~~~~~~~~~~~  296 (579)
                      --.+.|+.++....    .+-..+-...++. ..|.     |.|..+++.+.   ..++.+|.+++ .....-.+.....
T Consensus       424 f~n~eIfrireKdI----pve~velke~vi~-FaWE-----P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~  493 (698)
T KOG2314|consen  424 FSNLEIFRIREKDI----PVEVVELKESVIA-FAWE-----PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK  493 (698)
T ss_pred             EeeEEEEEeeccCC----Cceeeecchheee-eeec-----cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence            11345555554432    1223333333333 3444     88887776654   45899998874 2221111111112


Q ss_pred             eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec-CCCCcEEEeecCCcceeeccccc-----
Q 008058          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV-NSGEDINLNCSQDGVLLPMSQSL-----  370 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~~s~s~-----  370 (579)
                      .+....++|.|+    .++.+..-+    ..|.+-..+. ....+..+... |. ..+.+-|.|.|+|+ +++|.     
T Consensus       494 ~~N~vfwsPkG~----fvvva~l~s----~~g~l~F~D~-~~a~~k~~~~~eh~-~at~veWDPtGRYv-vT~ss~wrhk  562 (698)
T KOG2314|consen  494 FANTVFWSPKGR----FVVVAALVS----RRGDLEFYDT-DYADLKDTASPEHF-AATEVEWDPTGRYV-VTSSSSWRHK  562 (698)
T ss_pred             ccceEEEcCCCc----EEEEEEecc----cccceEEEec-chhhhhhccCcccc-ccccceECCCCCEE-EEeeehhhhc
Confidence            222233677777    777766643    1222222221 11111112222 33 56888899999999 77763     


Q ss_pred             -eecccceeee
Q 008058          371 -LKSKRGRYVQ  380 (579)
Q Consensus       371 -d~~~~~w~~~  380 (579)
                       |+--++|.++
T Consensus       563 ~d~GYri~tfq  573 (698)
T KOG2314|consen  563 VDNGYRIFTFQ  573 (698)
T ss_pred             cccceEEEEee
Confidence             3334555553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.02  E-value=4.9e-07  Score=85.05  Aligned_cols=217  Identities=18%  Similarity=0.199  Sum_probs=135.6

Q ss_pred             CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC
Q 008058           26 DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA  105 (579)
Q Consensus        26 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~  105 (579)
                      +|+|..||..+|+.+....... ...                  .....+. .      .+..+++++.++.+..||..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-~~~------------------~~~~~~~-~------~~~~v~~~~~~~~l~~~d~~t   55 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-GIG------------------GPVATAV-P------DGGRVYVASGDGNLYALDAKT   55 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-SCS------------------SEEETEE-E------ETTEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEECCCCCEEEEEECCC-CCC------------------CccceEE-E------eCCEEEEEcCCCEEEEEECCC
Confidence            6899999999999988775311 000                  0000000 0      066788889999999999999


Q ss_pred             CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCCC---CeeEEEEccCCCEEEEEC--C
Q 008058          106 GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RASTK---GISCMAVSSDGKMLATAA--G  179 (579)
Q Consensus       106 ~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~---~v~~l~~~p~g~~l~~~~--g  179 (579)
                      |+.+++....  .++.... ..++..++.++.++.++.+|..+|+.+... .....   .........++..++.+.  +
T Consensus        56 G~~~W~~~~~--~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  132 (238)
T PF13360_consen   56 GKVLWRFDLP--GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG  132 (238)
T ss_dssp             SEEEEEEECS--SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS
T ss_pred             CCEEEEeecc--cccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC
Confidence            9998777532  1111111 224556777778889999999999998884 33211   112222222355555554  8


Q ss_pred             eEEEEECCCCeeeEEeecCCCCE-----------EEEEEecCCCEEEEEecCCCe-EEEEEcCCCccccceeEEeeecCc
Q 008058          180 QLKTFNCSDHKKMQKFSGHPGAV-----------RFMTFSDNGKYVLSSAVGERY-IALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~l~s~s~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      .|..+|.++|+.+.....+....           ..+.+ .++ .++.++ .++. +.+ |+.+++..     +... ..
T Consensus       133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~-~~g~~~~~-d~~tg~~~-----w~~~-~~  202 (238)
T PF13360_consen  133 KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSS-GDGRVVAV-DLATGEKL-----WSKP-IS  202 (238)
T ss_dssp             EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEEC-CTSSEEEE-ETTTTEEE-----EEEC-SS
T ss_pred             cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEc-CCCeEEEE-ECCCCCEE-----EEec-CC
Confidence            99999999999988886644221           22233 244 555555 5675 555 99988632     2222 22


Q ss_pred             eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          248 VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .....  ..     ..+..|+.++.+|.+..||..+++.+.
T Consensus       203 ~~~~~--~~-----~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  203 GIYSL--PS-----VDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             -ECEC--EE-----CCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CccCC--ce-----eeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            21111  11     567888888899999999999998753

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=2.3e-09  Score=117.15  Aligned_cols=181  Identities=15%  Similarity=0.205  Sum_probs=145.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+.++|+.||.|++|....++.+......-...|+.+.|+.+|+.+..+..||.+.+|... .+.....+.|....+..
T Consensus      2220 ~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df 2298 (2439)
T KOG1064|consen 2220 DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDF 2298 (2439)
T ss_pred             CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccce
Confidence            45689999999999999998887655554455899999999999999999999999999975 77777888999888888


Q ss_pred             EEccCCCEEEEEC-----CeEEEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          166 AVSSDGKMLATAA-----GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       166 ~~~p~g~~l~~~~-----g~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|-.  ..+++++     +.+.+||.--  +..+.. +.|.+.++++++.|..+.|++|| .+|.|++||++..+.+   
T Consensus      2299 ~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisgg-r~G~v~l~D~rqrql~--- 2371 (2439)
T KOG1064|consen 2299 RFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGG-RKGEVCLFDIRQRQLR--- 2371 (2439)
T ss_pred             eeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecC-CcCcEEEeehHHHHHH---
Confidence            8874  6677765     6899999642  222222 78999999999999999999998 7999999999987644   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                            |+-..     +      ....++++|+..|.++||++.....+...+
T Consensus      2372 ------h~~~~-----~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2372 ------HTFQA-----L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             ------HHhhh-----h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence                  22111     1      234789999999999999998887766553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.01  E-value=6.6e-09  Score=93.95  Aligned_cols=247  Identities=17%  Similarity=0.223  Sum_probs=160.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .++.|...|.||++|..-|+|.+|......     ...+|++|.....   |.   ..-.....+..+.|+...+     
T Consensus        30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFD---YL---kSleieEKin~I~w~~~t~-----   98 (460)
T COG5170          30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFD---YL---KSLEIEEKINAIEWFDDTG-----   98 (460)
T ss_pred             eEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchh---hh---hhccHHHHhhheeeecCCC-----
Confidence            445899999999999999999999765432     2233444432211   11   1122234567788887653     


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeE-------------------------------------E----EE-ecCCCCCCEE
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQL-------------------------------------K----WR-LSDCHPGGVS  121 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~-------------------------------------~----~~-~~~~h~~~V~  121 (579)
                        ...+++.+.+.+|++|.+.....                                     +    .+ ....|..-|.
T Consensus        99 --r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170          99 --RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             --cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence              45688889999999998854310                                     0    01 1245777789


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeecCC-----CCeeEEEEccCC--CEEEEEC-CeEEEEECCCCe
Q 008058          122 AISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRAST-----KGISCMAVSSDG--KMLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~l~~~p~g--~~l~~~~-g~i~vwd~~~~~  190 (579)
                      ++.|+.|...++++ .|-.|.+|++.--.   .+..++.|.     .-|++..|+|..  -++.+.+ |.|++-|++...
T Consensus       177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            99999998888877 67789999986432   223344443     257888999954  3455556 999999998532


Q ss_pred             ee----E------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC--------
Q 008058          191 KM----Q------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--------  246 (579)
Q Consensus       191 ~~----~------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--------  246 (579)
                      ..    +            -|.+-.+.|..+.|+++|+|+++-.  =-+|++||.+..+..    +.+..-+        
T Consensus       256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd--yltvkiwDvnm~k~p----ikTi~~h~~l~~~l~  329 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD--YLTVKIWDVNMAKNP----IKTIPMHCDLMDELN  329 (460)
T ss_pred             hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec--cceEEEEecccccCC----ceeechHHHHHHHHH
Confidence            21    1            1122345688899999999998753  468999999886532    3333211        


Q ss_pred             -----ceeeE--eEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          247 -----AVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       247 -----~~~~~--~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                           ..+..  -+.|+     .|.+.+.+|+..+..-+|-
T Consensus       330 d~YEnDaifdkFeisfS-----gd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         330 DVYENDAIFDKFEISFS-----GDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             hhhhccceeeeEEEEec-----CCcccccccccccceeeec
Confidence                 11111  12333     6888899999888887775

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.01  E-value=4.2e-07  Score=100.21  Aligned_cols=238  Identities=13%  Similarity=0.201  Sum_probs=155.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEE----ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIW----DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.|  +++.|-++...++.+..+|.|.+.    +..+....                   ..|..+..+.+++|.|.   
T Consensus        76 ~~i--vs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-------------------~VG~vd~GI~a~~WSPD---  131 (928)
T PF04762_consen   76 DKI--VSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-------------------IVGSVDSGILAASWSPD---  131 (928)
T ss_pred             CcE--EEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-------------------EEEEEcCcEEEEEECCC---
Confidence            346  777899999989999999999988    44433321                   12555667888999886   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEcc----C---------C--eEE--------EEe------------c--------CC-
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVS----A---------G--QLK--------WRL------------S--------DC-  115 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~----~---------~--~~~--------~~~------------~--------~~-  115 (579)
                            ..++++.+.+|++.+.+-.    .         |  +.+        -++            .        .+ 
T Consensus       132 ------~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~  205 (928)
T PF04762_consen  132 ------EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK  205 (928)
T ss_pred             ------cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence                  7889999999997775421    0         0  000        000            0        00 


Q ss_pred             --CCCCEEEEEEccCCCEEEEEeC---C---CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEE
Q 008058          116 --HPGGVSAISFATHGSCIYSAGA---D---GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLK  182 (579)
Q Consensus       116 --h~~~V~~l~~~~~~~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~  182 (579)
                        +.+.-..++|..||.+|++.+.   .   ..+++|+ ++|....+-..-.+--.+++|.|.|+++|+..     ..|.
T Consensus       206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv  284 (928)
T PF04762_consen  206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV  284 (928)
T ss_pred             cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence              2234567899999999998764   2   5799999 45765555443334446789999999999886     3566


Q ss_pred             EEECCCCeeeEEee----cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058          183 TFNCSDHKKMQKFS----GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       183 vwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      +|. ++|-....|.    .....|..+.|++|+..|+... .|. |.+|-..+..-- .+....+..... ...+.|++ 
T Consensus       285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-~~~-vqLWt~~NYHWY-LKqei~~~~~~~-~~~~~Wdp-  358 (928)
T PF04762_consen  285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-EDR-VQLWTRSNYHWY-LKQEIRFSSSES-VNFVKWDP-  358 (928)
T ss_pred             EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-cCC-ceEEEeeCCEEE-EEEEEEccCCCC-CCceEECC-
Confidence            665 5554444443    3456799999999999999875 454 999998776422 001112222222 23366662 


Q ss_pred             cccCCCcEEEEEEcCCeEEEEEC
Q 008058          259 GVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                         .+...|...+.+|.+..++.
T Consensus       359 ---e~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  359 ---EKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             ---CCCCEEEEEecCCcEEEEEE
Confidence               25567888888788877664

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.4e-07  Score=92.14  Aligned_cols=272  Identities=12%  Similarity=0.147  Sum_probs=169.5

Q ss_pred             EEEccCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058           11 TSFSPALDYFAICSG-----------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        11 ~~fs~dg~~las~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.|||+.+||+|-+.           -..+.|||+.+|.....|.....               .........|+..+  
T Consensus       255 idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~---------------~~~~WP~frWS~Dd--  317 (698)
T KOG2314|consen  255 IDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS---------------PYLKWPIFRWSHDD--  317 (698)
T ss_pred             eecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC---------------CccccceEEeccCC--
Confidence            499999999998763           14799999999999888864321               12234456666542  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-----CCcEEEEeCCCCceeeE
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-----DGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~  154 (579)
                             . .++.-....|.||+..+-.++- ...-.-.+|....|+|.++.|+.=..     -..+.+..+.+++.+++
T Consensus       318 -------K-y~Arm~~~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  318 -------K-YFARMTGNSISIYETPSFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             -------c-eeEEeccceEEEEecCceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence                   3 3444445789999987744431 11123467999999999888775431     23567777777877776


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-  221 (579)
                      -.-+.-.=..+.|-.+|.+|+.--            ..+.|+.++....-...-.-...|...+|-|.|..+++-+..+ 
T Consensus       389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~  468 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV  468 (698)
T ss_pred             ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence            554444445677888888887632            2566777665543222223557788999999998877765333 


Q ss_pred             -CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---CCeEEEEECCCceeecccCCceEEe
Q 008058          222 -RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       222 -~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                       .++.+|.+.+.... ...+..+  .....+.+.|+     |.|++++++..   .|.+.++|...........+... .
T Consensus       469 k~tvsfY~~e~~~~~-~~lVk~~--dk~~~N~vfws-----PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~  539 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKK-PSLVKEL--DKKFANTVFWS-----PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-A  539 (698)
T ss_pred             ccceeEEEeecCCCc-hhhhhhh--cccccceEEEc-----CCCcEEEEEEecccccceEEEecchhhhhhccCcccc-c
Confidence             47889988742211 1122333  23455667787     99999988854   68999999875322222111111 1


Q ss_pred             eecccCcccccccchhhhhccccc
Q 008058          298 SSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .+...+.|.|+    ++++++...
T Consensus       540 at~veWDPtGR----YvvT~ss~w  559 (698)
T KOG2314|consen  540 ATEVEWDPTGR----YVVTSSSSW  559 (698)
T ss_pred             cccceECCCCC----EEEEeeehh
Confidence            11222456666    666665543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.95  E-value=2.1e-07  Score=82.80  Aligned_cols=200  Identities=10%  Similarity=-0.037  Sum_probs=133.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      -..|+.|+..|...+|.+.+++....+...|...|+-+.=.-+. ..+..++.|.++++.++.-+..........-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            45689999999999999998876555544555544332211122 23677889999999988654433222222224789


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCC-ee-eE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDH-KK-MQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~-~~-~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      +++++|++++++.+  ..|..|.+... +. +. ........=.+..|+.....++++. .||++.|||++.....-...
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~-Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF-QDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe-cCCcEEEEEecccccchhhh
Confidence            99999999999887  78999988753 22 22 1222333445678988888888887 89999999998765432223


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      ..+-+++...++.+.|+...  +. ..|+..-.=+.+++-|++++...+.
T Consensus       243 sstrp~hnGa~R~c~Fsl~g--~l-DLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYG--LL-DLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             cccCCCCCCceEEEEecCCC--cc-eEEEEecCcceEEEEEcccCceeeE
Confidence            33455778888888888321  22 2344444457899999988876543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.94  E-value=3.6e-08  Score=90.64  Aligned_cols=182  Identities=10%  Similarity=0.163  Sum_probs=125.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECC----CCeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTL----KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ++|++  +++|.+....|..|-..|++.-+.+.    .......+..|...+..+.|+.+.+---....-++++|.....
T Consensus        68 P~~~~--~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~  145 (404)
T KOG1409|consen   68 PSPCS--AMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTES  145 (404)
T ss_pred             CCCce--EeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeecc
Confidence            56774  44999999999999999999887654    3334555667777777777765522112223345667765432


Q ss_pred             ccccc------------cCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008058           79 KKKRK------------LGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        79 ~~~~~------------~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iw  144 (579)
                      ..+-.            .+-.+.+.|...|.|..-.+....  .+.++ .+|.+.+++++|.|..+.+++|..|..+.+|
T Consensus       146 ~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w  224 (404)
T KOG1409|consen  146 GNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF-NGHTGEVTCLKWDPGQRLLFSGASDHSVIMW  224 (404)
T ss_pred             CCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE-cCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence            21110            011234555566666665554332  34343 7899999999999999999999999999999


Q ss_pred             eCCCCc-eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC
Q 008058          145 DPLTGS-LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS  187 (579)
Q Consensus       145 d~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~  187 (579)
                      |+.-++ ......+|.+.|..+...+--+.+.+++  |.|.+||++
T Consensus       225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            986543 3445778888888888888778888877  899999983

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=3.6e-09  Score=102.59  Aligned_cols=223  Identities=14%  Similarity=0.165  Sum_probs=149.5

Q ss_pred             cCCCEEEEEeCCCcEEEEECC-------CCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           15 PALDYFAICSGDARIKIWDTL-------KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+.+-+++++.|.+|++|.++       +..|..+++.|..++.++.|..+                             
T Consensus       745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~-----------------------------  795 (1034)
T KOG4190|consen  745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD-----------------------------  795 (1034)
T ss_pred             ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-----------------------------
Confidence            355678999999999999875       33477778888877776666544                             


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCC-CCCCEEEEEEcc--CCCEEEE-EeCCCcEEEEeCCCCceeeEeec-----C
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDC-HPGGVSAISFAT--HGSCIYS-AGADGMVCEIDPLTGSLLGKFRA-----S  158 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~--~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~-----~  158 (579)
                      .-.+++.||-|.+||+--++...+.... ..+.+..+.--|  +...++. |+...+|+++|.+.+.....++.     .
T Consensus       796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P  875 (1034)
T KOG4190|consen  796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP  875 (1034)
T ss_pred             cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence            1256778999999999888766443211 112222232223  3444444 47889999999998876666543     3


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCCCccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v-wd~~~~~~~  235 (579)
                      ...+.+++..|.|+.++.+-  |.|.+.|.++|+.+..+.........++- |..+.++.+. -|.++.+ |..-.+.. 
T Consensus       876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sa-ldHslaVnWhaldgim-  952 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSA-LDHSLAVNWHALDGIM-  952 (1034)
T ss_pred             chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhc-ccceeEeeehhcCCee-
Confidence            45689999999999999886  99999999999988877665555544443 5566777776 5899988 87665531 


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                          .+....+........       .-|.-+++......+.+|.
T Consensus       953 ----h~q~kpppepahflq-------svgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  953 ----HLQDKPPPEPAHFLQ-------SVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             ----eeccCCCCcchhhhh-------ccCceeEEeccCcEEEEEe
Confidence                122222221111111       2355677777777788884

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=3.8e-09  Score=102.41  Aligned_cols=172  Identities=16%  Similarity=0.176  Sum_probs=131.4

Q ss_pred             cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-------CceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEE
Q 008058          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-------GSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFN  185 (579)
Q Consensus       113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd  185 (579)
                      +.||...|..++--.+.+.+++++.|++|++|.++.       ..+..+++.|+.+|..+.|-.+-+++++++|.|++||
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD  810 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD  810 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence            368999998887777778899999999999999863       2366778899999999999999999999999999999


Q ss_pred             CCCCeeeEEee--cCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEee---ecCceeeEeEEecCC
Q 008058          186 CSDHKKMQKFS--GHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNG  258 (579)
Q Consensus       186 ~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  258 (579)
                      .--++++.++.  ...+.+..+..-++  ...++++++...+|+++|.+..+-.   +.+..   ..+....++....  
T Consensus       811 PFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---~E~kVcna~~Pna~~R~iaVa--  885 (1034)
T KOG4190|consen  811 PFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---CELKVCNAPGPNALTRAIAVA--  885 (1034)
T ss_pred             ccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce---eeEEeccCCCCchheeEEEec--
Confidence            88777765442  12233444444443  4455555457889999999987633   32322   3455667777776  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          259 GVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                         +.|++++++-.+|+|-+.|.++|+.+..-.|
T Consensus       886 ---~~GN~lAa~LSnGci~~LDaR~G~vINswrp  916 (1034)
T KOG4190|consen  886 ---DKGNKLAAALSNGCIAILDARNGKVINSWRP  916 (1034)
T ss_pred             ---cCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence               8999999999999999999999988765443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.91  E-value=1.6e-07  Score=94.25  Aligned_cols=239  Identities=12%  Similarity=0.145  Sum_probs=157.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -|++|+....|+|+|+.||.++|-.+.+...-...++ -.....+..+.. ..|| ...+..+.|...+++         
T Consensus        18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-laa~snLsmNQt-LeGH-~~sV~vvTWNe~~QK---------   85 (1189)
T KOG2041|consen   18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-LAAASNLSMNQT-LEGH-NASVMVVTWNENNQK---------   85 (1189)
T ss_pred             EEEEEcccCCeEEeccccceeEEEEccccCCcccccc-cccccccchhhh-hccC-cceEEEEEecccccc---------
Confidence            4669999999999999999999998876543322222 112223333333 3355 345667888876444         


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (579)
                      |-++..+|-|.+|-+-.|....... ....+-|.+++|+.||..+.....||.|.+=.+...+...+ ++  ......+.
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~  163 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVL  163 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhecccee
Confidence            7888889999999998887543332 33456799999999999999999999998877654332221 22  22445789


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCC-------eeeEE----eecCCCCEEEEEEe--------cCCCEEEEEecCCCeEE
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDH-------KKMQK----FSGHPGAVRFMTFS--------DNGKYVLSSAVGERYIA  225 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~-------~~~~~----~~~h~~~v~~l~~~--------~~~~~l~s~s~~d~~i~  225 (579)
                      |++|.+.++.+-  |.+.+||.+..       .+...    +......+..+.|.        |+...|+.+- ..|.+.
T Consensus       164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-~nGr~Q  242 (1189)
T KOG2041|consen  164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-ANGRMQ  242 (1189)
T ss_pred             ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-cCceeh
Confidence            999998877765  89999997642       11111    12222335556653        5777888875 688888


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      +..-.+....   .+.   ..+..+....|+     ++|..|++++.+
T Consensus       243 iMR~eND~~P---vv~---dtgm~~vgakWn-----h~G~vLAvcG~~  279 (1189)
T KOG2041|consen  243 IMRSENDPEP---VVV---DTGMKIVGAKWN-----HNGAVLAVCGND  279 (1189)
T ss_pred             hhhhcCCCCC---eEE---ecccEeecceec-----CCCcEEEEccCc
Confidence            7655444322   122   222344556666     899999998764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.89  E-value=6.3e-06  Score=77.83  Aligned_cols=217  Identities=18%  Similarity=0.210  Sum_probs=131.6

Q ss_pred             EEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+|.+ +|.++++--..+.|..|+..++.... +....  ..                  .+.....         ...+
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~------------------G~~~~~~---------~g~l   54 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PN------------------GMAFDRP---------DGRL   54 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EE------------------EEEEECT---------TSEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--Cc------------------eEEEEcc---------CCEE
Confidence            37888 66666666568999999998876543 22111  11                  1111111         3446


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec---CC-CCCCEEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCceeeEeec
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLS---DC-HPGGVSAISFATHGSCIYSAGAD--------GMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~---~~-h~~~V~~l~~~~~~~~l~s~~~d--------g~v~iwd~~~~~~~~~~~~  157 (579)
                      +++...+ +.++|+.+++......   .. .....+++++.|+|+..++....        |.|+.++.. ++...... 
T Consensus        55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-  131 (246)
T PF08450_consen   55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-  131 (246)
T ss_dssp             EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred             EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-
Confidence            6666544 4555999886542222   11 34568999999999966665533        568888876 55443333 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCC-e------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSDH-K------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~-~------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .-...+.|+|+|+++.|+.+.   +.|..|++... .      ....+....+..-.+++..+|+..++.. ..+.|.++
T Consensus       132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~  210 (246)
T PF08450_consen  132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVF  210 (246)
T ss_dssp             EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEE
T ss_pred             CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEE
Confidence            345678999999999887654   78999998632 1      1222232233478899999998776655 68899999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  271 (579)
                      +.+ ++..     ..+..+....+.++|.    .++.+.|+..+
T Consensus       211 ~p~-G~~~-----~~i~~p~~~~t~~~fg----g~~~~~L~vTt  244 (246)
T PF08450_consen  211 DPD-GKLL-----REIELPVPRPTNCAFG----GPDGKTLYVTT  244 (246)
T ss_dssp             ETT-SCEE-----EEEE-SSSSEEEEEEE----STTSSEEEEEE
T ss_pred             CCC-ccEE-----EEEcCCCCCEEEEEEE----CCCCCEEEEEe
Confidence            987 5533     2333333355666663    15666665544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.89  E-value=3.2e-07  Score=87.96  Aligned_cols=173  Identities=17%  Similarity=0.168  Sum_probs=126.2

Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           13 FSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        13 fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      |++ +|++++..|. |...|.+.-.+..++.=  +...+.                     ......      .+.-++.
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~--~~~~Vr---------------------Y~r~~~------~~e~~vi  376 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVG--KKGGVR---------------------YRRIQV------DPEGDVI  376 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEcC--CCCceE---------------------EEEEcc------CCcceEE
Confidence            444 7889998884 67777776555544321  111111                     111000      1446899


Q ss_pred             EECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           92 GTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        92 ~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      |+.|| .+-+||..+++.. ++ .+.-+.|.++..+|+|++++.+.....+.+.|+.+|.....=+...+-|+..+|+|+
T Consensus       377 gt~dgD~l~iyd~~~~e~k-r~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n  454 (668)
T COG4946         377 GTNDGDKLGIYDKDGGEVK-RI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN  454 (668)
T ss_pred             eccCCceEEEEecCCceEE-Ee-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence            99999 5999999999865 33 346688999999999999999988889999999999876555556678999999999


Q ss_pred             CCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058          171 GKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       171 g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ++++|-+-      ..|++||+.+++....-+ ..+.=.+-+|.|++++|..-+
T Consensus       455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence            99999885      589999999887654332 333345678999999887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=2.2e-06  Score=82.41  Aligned_cols=170  Identities=18%  Similarity=0.203  Sum_probs=125.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++.+. |...+.+...+-.+ +  -+|.+.|.-..+..+++-++.|..|| .+-++|..+++.. .+...-+.|.+
T Consensus       332 Gd~ia~VSR-GkaFi~~~~~~~~i-q--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~a  406 (668)
T COG4946         332 GDYIALVSR-GKAFIMRPWDGYSI-Q--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEA  406 (668)
T ss_pred             CcEEEEEec-CcEEEECCCCCeeE-E--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEE
Confidence            666666654 56666666655544 2  36888899999988888999999999 8999998877654 45556678999


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccce
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSAS  238 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~  238 (579)
                      +..+|+|+.++.+.  ..|.++|+.+++....=+...+-|+.+.|||++++++.+- -+|    .|+++|+.+++..   
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf-P~gy~tq~Iklydm~~~Kiy---  482 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF-PEGYYTQSIKLYDMDGGKIY---  482 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec-CcceeeeeEEEEecCCCeEE---
Confidence            99999999999998  6888999999976555455678899999999999998874 455    6999999988632   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                         ....+...=-.-+|.     |++++|.--+.
T Consensus       483 ---~vTT~ta~DfsPaFD-----~d~ryLYfLs~  508 (668)
T COG4946         483 ---DVTTPTAYDFSPAFD-----PDGRYLYFLSA  508 (668)
T ss_pred             ---EecCCcccccCcccC-----CCCcEEEEEec
Confidence               222221111123344     88988766543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=5.6e-07  Score=91.13  Aligned_cols=189  Identities=13%  Similarity=0.100  Sum_probs=116.7

Q ss_pred             eEEEEccCCCE-EEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            9 ILTSFSPALDY-FAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 ~~~~fs~dg~~-las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +...|||||+. ++..+.+   ..|.++|+.+|+...... ..+..                  ....|.|.        
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~------------------~~~~~SPD--------  243 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGML------------------VVSDVSKD--------  243 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcE------------------EeeEECCC--------
Confidence            67799999985 6655543   468888998887654332 11111                  12334432        


Q ss_pred             CCcEEE-EEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008058           85 GSSLLV-LGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        85 ~~~~l~-~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~  158 (579)
                       +..++ +.+.+  ..|.++|+.+++.. .+. .+........|+|||+.|+..+. .+  .|+++|+.+++..+.... 
T Consensus       244 -G~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-  319 (419)
T PRK04043        244 -GSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-  319 (419)
T ss_pred             -CCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-
Confidence             44444 44434  45888898888754 332 23333445689999998776653 23  688889887766443321 


Q ss_pred             CCCeeEEEEccCCCEEEEEC--C---------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEE
Q 008058          159 TKGISCMAVSSDGKMLATAA--G---------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIA  225 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g---------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~  225 (579)
                      ...  ...|+|||+.++...  .         .|++.|+.++.. ..+... .......|+|||+.++..+...+  .+.
T Consensus       320 g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~  395 (419)
T PRK04043        320 GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALG  395 (419)
T ss_pred             CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEE
Confidence            111  248999999888654  1         578889887754 344433 23345889999998877663333  355


Q ss_pred             EEEcCCC
Q 008058          226 LWRTDGV  232 (579)
Q Consensus       226 vwd~~~~  232 (579)
                      +.++...
T Consensus       396 ~~~l~g~  402 (419)
T PRK04043        396 IIRLNYN  402 (419)
T ss_pred             EEecCCC
Confidence            6666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.88  E-value=2.5e-06  Score=80.59  Aligned_cols=191  Identities=18%  Similarity=0.203  Sum_probs=126.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEeec-----CC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFRA-----ST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~  159 (579)
                      +.++++-...+.|+.|+..++........    ...++.+. +++ .++.+..++ +.++|+.+++....+..     ..
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~----~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP----GPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEESS----SEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEEEEecC----CCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence            66677777789999999999877532211    27788888 564 555565554 56669988865444332     23


Q ss_pred             CCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          160 KGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      ...+.++++|+|++.++..          |.|+.++.. ++...... .-...+.|+|+|+++.|+.+.+..+.|..+++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~  163 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL  163 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEec
Confidence            4788999999999777754          236667766 44433333 34567899999999988766667888999998


Q ss_pred             CCCcc-c-cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          230 DGVKK-Q-SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       230 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..... . .......+.........+++.     .+|+..++.-..+.|.+++.+ |+.+..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-----~~G~l~va~~~~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-----SDGNLWVADWGGGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-----TTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEc-----CCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence            65432 1 111222333333346777787     889888887889999999987 7666543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.85  E-value=1.2e-06  Score=98.70  Aligned_cols=212  Identities=11%  Similarity=0.128  Sum_probs=128.9

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccc-cccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNR-LEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+++++.|+.+.. .+.|+++|..++.. ..+.+...  ....+... ......-..-..+++.+.+        +.
T Consensus       628 GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~--~g~~~~gg~~~~~~~ln~P~gVa~dp~~--------g~  696 (1057)
T PLN02919        628 GLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGT--KGSDYQGGKKGTSQVLNSPWDVCFEPVN--------EK  696 (1057)
T ss_pred             EEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCc--ccCCCCCChhhhHhhcCCCeEEEEecCC--------Ce
Confidence            3488998887666554 56899999877653 33322110  00000000 0000000011245555432        55


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEec-------CC------CCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceee
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLS-------DC------HPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~-------~~------h~~~V~~l~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~  153 (579)
                      ++++.+.++.|++||..++....-.-       .+      .-...++++|+|+|+.|+. -+.++.|++||+.++....
T Consensus       697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~  776 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL  776 (1057)
T ss_pred             EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence            66666778889999998776531100       01      1124568999999986554 4567899999998765321


Q ss_pred             Eeec-------------C--------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------
Q 008058          154 KFRA-------------S--------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------  197 (579)
Q Consensus       154 ~~~~-------------~--------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~-------------  197 (579)
                      ...+             .        -.....++++++|+++++-.  +.|++||..++.... +.+             
T Consensus       777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~  855 (1057)
T PLN02919        777 LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALK  855 (1057)
T ss_pred             EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccc
Confidence            1100             0        11346899999998777665  799999998876543 222             


Q ss_pred             -CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          198 -HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       198 -h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                       +-.....++++++|+.+++-+ .++.|++||+.+++.
T Consensus       856 a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        856 AQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCcc
Confidence             112467899999998777665 789999999988753

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.85  E-value=3.4e-08  Score=92.80  Aligned_cols=159  Identities=10%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +.++|+|+++|.+..+....+++.........+-               .........+.+.+...         ...+.
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~---------------~~~~v~~~~~ai~~~~~---------~~sv~  123 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLL---------------DVSCVPKRPTAISFIRE---------DTSVL  123 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceee---------------eEeecccCcceeeeeec---------cceEE
Confidence            3688999999999988888788776443211110               00011112223333333         33455


Q ss_pred             EEECCCe---EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEE
Q 008058           91 LGTGGGD---VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        91 ~~~~~g~---i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~  166 (579)
                      ++..-|+   +.+|+...+.+.  ..-||-+.+++++|+||+++|+++..|..|++-....-..+.. +-+|...|..++
T Consensus       124 v~dkagD~~~~di~s~~~~~~~--~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is  201 (390)
T KOG3914|consen  124 VADKAGDVYSFDILSADSGRCE--PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS  201 (390)
T ss_pred             EEeecCCceeeeeecccccCcc--hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee
Confidence            5555555   445554445443  3358999999999999999999999999999987765555555 456999999999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEee
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~  196 (579)
                      .-++.. |++++  +++++||+.+|+.+.++.
T Consensus       202 l~~~~~-LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  202 LTDNYL-LLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eccCce-eeecCCCCcEEEEecccCCcccccc
Confidence            987654 66665  899999999999886653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=3.3e-06  Score=85.55  Aligned_cols=181  Identities=11%  Similarity=-0.005  Sum_probs=113.8

Q ss_pred             Cc-EEEEEECC---CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eC--CCcEEEEeCCCCceeeEeecC
Q 008058           86 SS-LLVLGTGG---GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GA--DGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        86 ~~-~l~~~~~~---g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~--dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      ++ .++..+..   ..|+++|+.+++...-.  ...+......|+|||+.++.. +.  +..|+++|+.+++.. .+..+
T Consensus       199 G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~  275 (419)
T PRK04043        199 EQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNY  275 (419)
T ss_pred             CCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccC
Confidence            44 35544443   45999999988765332  244556778899999876543 33  356888898777643 34333


Q ss_pred             CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--------CeEE
Q 008058          159 TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--------RYIA  225 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--------~~i~  225 (579)
                      ........|+|||+.|+..+     ..|+++|+.+++..+.... ...  ...|+|||++++..+..+        ..|.
T Consensus       276 ~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~  352 (419)
T PRK04043        276 PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLY  352 (419)
T ss_pred             CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence            33334568999999877765     2799999988765332221 111  248999999988877433        3678


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNI  284 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~  284 (579)
                      +.|+.++...      .+.... ......|+     |||+.|+..+.++   .+.+.+++..
T Consensus       353 v~d~~~g~~~------~LT~~~-~~~~p~~S-----PDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        353 LISTNSDYIR------RLTANG-VNQFPRFS-----SDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEECCCCCeE------ECCCCC-CcCCeEEC-----CCCCEEEEEEccCCcEEEEEEecCCC
Confidence            8888777532      121111 11234566     9999888776533   4566666543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.83  E-value=6.6e-07  Score=90.86  Aligned_cols=228  Identities=15%  Similarity=0.119  Sum_probs=138.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.+|.+..+|.++|+.....+....     .++.+            +.            .+..+++++.+|
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-----~~ssP------------~v------------~~~~v~v~~~~g  170 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE-----ALSRP------------VV------------SDGLVLVHTSNG  170 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCc-----eecCC------------EE------------ECCEEEEECCCC
Confidence            45677788899999999999998877653211     01111            00            045678888999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-------CeeEEEE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-------GISCMAV  167 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~l~~  167 (579)
                      .+..+|..+|+.+++.............-+|  .+..++.++.+|.+..+|..+|+.+........       ....+..
T Consensus       171 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~  250 (394)
T PRK11138        171 MLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT  250 (394)
T ss_pred             EEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence            9999999999998877432110000000011  234577778899999999999987665432110       0111112


Q ss_pred             cc---CCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          168 SS---DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       168 ~p---~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +|   ++..++++. |.+..+|..+|+.+.+..-  .....+..  .+..++.++ .++.+..+|..+++..     ...
T Consensus       251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~-~~g~l~ald~~tG~~~-----W~~  320 (394)
T PRK11138        251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVD-QNDRVYALDTRGGVEL-----WSQ  320 (394)
T ss_pred             CcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEc-CCCeEEEEECCCCcEE-----Ecc
Confidence            22   444444444 8999999999987655431  11122222  344566665 6899999999888643     211


Q ss_pred             ec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          244 EH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      .. ..........       .+.+|+.++.||.++.+|..+|+.+...
T Consensus       321 ~~~~~~~~~sp~v-------~~g~l~v~~~~G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        321 SDLLHRLLTAPVL-------YNGYLVVGDSEGYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cccCCCcccCCEE-------ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence            11 0111111111       2467788999999999999999877654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.82  E-value=1.6e-06  Score=88.01  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=140.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+..+++++.+|.+.-+|..+|+.+...+.....   ..++.. ......  .....            .+..+++++.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~~~~-~~~~~~--~~~~v------------~~~~v~v~~~~  129 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD---GWFSKN-KSALLS--GGVTV------------AGGKVYIGSEK  129 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc---cccccc-cccccc--cccEE------------ECCEEEEEcCC
Confidence            4567778888899999999999988876532210   000000 000000  00000            15668889999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEcc
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSS  169 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p  169 (579)
                      |.+..+|..+|+.+++....  +.+.+ ...  .+..++.+..++.++.+|..+|+.+..+......+     .+.... 
T Consensus       130 g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-  204 (394)
T PRK11138        130 GQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-  204 (394)
T ss_pred             CEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-
Confidence            99999999999998876432  22222 112  24467778889999999999999887765421111     111121 


Q ss_pred             CCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-------CEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          170 DGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       170 ~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++..++..+ |.+..+|..+|+.+.+......       ....+.-+|  .+..++.++ .++.+..+|..+++..    
T Consensus       205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~----  279 (394)
T PRK11138        205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIV----  279 (394)
T ss_pred             CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEE----
Confidence            344444333 8899999999887655431110       000111112  234566665 6899999999988643    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                       +...... ... ..       ..+..|+.++.+|.++.+|..+++.+...
T Consensus       280 -W~~~~~~-~~~-~~-------~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        280 -WKREYGS-VND-FA-------VDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             -EeecCCC-ccC-cE-------EECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence             2221111 001 11       24567888889999999999999876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.82  E-value=1.8e-06  Score=78.27  Aligned_cols=207  Identities=15%  Similarity=0.189  Sum_probs=110.9

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +||||+..||.+...|+|+++|+.. ..+..+......           .+..+..+..+.+.......+   -...|++
T Consensus        50 ~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~-----------~~d~~~Aiagl~Fl~~~~s~~---ws~ELlv  114 (282)
T PF15492_consen   50 AWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSF-----------PGDLSDAIAGLIFLEYKKSAQ---WSYELLV  114 (282)
T ss_pred             EECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccccc-----------CCccccceeeeEeeccccccc---cceeEEE
Confidence            9999999999999999999999875 444444321110           122223333344433221100   0335777


Q ss_pred             EECCCeEEEEEccCC-----eE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeeEeecCCCCee
Q 008058           92 GTGGGDVLALAVSAG-----QL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGM-VCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~-----~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      -...|.++-|-+..+     +.  ...+...+..+|.++.|+|..+.|+.|+.... -..+. ...--+..++.-.+...
T Consensus       115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-a~~~GLtaWRiL~~~Py  193 (282)
T PF15492_consen  115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-ASSCGLTAWRILSDSPY  193 (282)
T ss_pred             EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-ccccCceEEEEcCCCCc
Confidence            778888777776432     11  12333345678999999999888877764321 00000 00000111111111111


Q ss_pred             EEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ...+...+.-+.....+-.+|.+-+.+...........|..|..+|||+.|++.. -+|.|.+|++.+-..+
T Consensus       194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih-~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH-FSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE-cCCeEEEEecCcchhh
Confidence            1111111111111111223333333222222223456799999999999999987 6999999999886544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.82  E-value=1.4e-07  Score=86.70  Aligned_cols=247  Identities=13%  Similarity=0.086  Sum_probs=152.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE----EEEecCCCC------------CCEEEEEEccCCC--EEEEEeCCCcEEEEeCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQL----KWRLSDCHP------------GGVSAISFATHGS--CIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~~~dg~v~iwd~~  147 (579)
                      |.+|++|..+|.|.+|.-.....    .....+.|.            ..|..+.|.++++  .++..+.|.+|++|-+.
T Consensus        37 Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~  116 (433)
T KOG1354|consen   37 GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIR  116 (433)
T ss_pred             cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeee
Confidence            89999999999999987543221    222223333            3588899988765  46777799999999875


Q ss_pred             CCcee-----------------------------------eEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008058          148 TGSLL-----------------------------------GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       148 ~~~~~-----------------------------------~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~  190 (579)
                      .....                                   +.+ .+|.--|++|.++.|+..+++++ =.|-+|++.-..
T Consensus       117 er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d  196 (433)
T KOG1354|consen  117 ERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIID  196 (433)
T ss_pred             ccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccC
Confidence            32110                                   111 14666889999999999999999 699999987432


Q ss_pred             e---eEEeecCC-----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc-ceeEEeeecC----------ceee
Q 008058          191 K---MQKFSGHP-----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS-ASCVLAMEHP----------AVFM  250 (579)
Q Consensus       191 ~---~~~~~~h~-----~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~-~~~~~~~~~~----------~~~~  250 (579)
                      .   +..++.+.     .-|++..|+|... .++.++ ..|+|++.|++....-. ....+.....          -..+
T Consensus       197 ~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS-SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSI  275 (433)
T KOG1354|consen  197 QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS-SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSI  275 (433)
T ss_pred             CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec-CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhh
Confidence            2   33333332     3478889999643 455555 58999999998542110 0011111111          1223


Q ss_pred             EeEEecCCcccCCCcEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceE
Q 008058          251 DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  329 (579)
                      +-+.|+     ++|+++++-+. -+|++||+. ..+++...+-+..           -+   ..+.+--...        
T Consensus       276 SDvKFs-----~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~-----------lr---~kLc~lYEnD--------  327 (433)
T KOG1354|consen  276 SDVKFS-----HSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY-----------LR---SKLCSLYEND--------  327 (433)
T ss_pred             hceEEc-----cCCcEEEEecc-ceeEEEeccccCCcceEEeehHh-----------HH---HHHHHHhhcc--------
Confidence            445555     89999987654 589999973 2233322211100           00   0111111110        


Q ss_pred             EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                             .+           .....++||-++.++ +|||..+..++.++.
T Consensus       328 -------~I-----------fdKFec~~sg~~~~v-~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  328 -------AI-----------FDKFECSWSGNDSYV-MTGSYNNVFRVFNLA  359 (433)
T ss_pred             -------ch-----------hheeEEEEcCCcceE-ecccccceEEEecCC
Confidence                   01           134567899999999 999999999999853

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.82  E-value=6e-08  Score=85.83  Aligned_cols=188  Identities=12%  Similarity=0.183  Sum_probs=112.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAG-----ADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.++++..||.+.+++.+.-... .++...|.+ -.+.++...++.+.++.     .-+..+.|+++..+.+..-....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            567899999999999988752111 111111222 12222333444444432     23345666665433222211122


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCCee-eEEeecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEcCCCcc
Q 008058          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~-~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ..|.+++-+|..+.++.++   |.+-+||.++... ...+..|+.+++.+-|+|. +..|++++ +||.+..||..+.-.
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s-edGslw~wdas~~~l  258 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS-EDGSLWHWDASTTFL  258 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec-CCCcEEEEcCCCceE
Confidence            3599999999766555544   8999999998743 4456789999999999984 56788887 899999999874210


Q ss_pred             c-----cce------------eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          235 Q-----SAS------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       235 ~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      .     +..            .-...--+....++..|.     --|..|++|+.-+.|++++
T Consensus       259 ~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD-----V~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  259 SISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD-----VLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EecCccccccccccCCcccceEeeeccccccceeeeeee-----ccCceEEeccccceEEEec
Confidence            0     000            000000122233334443     5678888888888888874

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=6e-07  Score=91.10  Aligned_cols=242  Identities=16%  Similarity=0.172  Sum_probs=157.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc---CCc
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL---GSS   87 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~   87 (579)
                      +.|+|.| .||.|+. ..|.|-|..+-+.++.+.-|...++                  .+.|.|..-...-..   ..-
T Consensus        21 ~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~------------------~VrWap~~~p~~llS~~~~~l   80 (1062)
T KOG1912|consen   21 ADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVT------------------SVRWAPAPSPRDLLSPSSSQL   80 (1062)
T ss_pred             cccCccc-eEEEecC-ceEEEEehhhhhhhhccccCcccee------------------EEEeccCCCchhccCccccce
Confidence            3889888 7888874 4788999999998888876665554                  445544321100000   134


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +|+++.-.|.|.+||...+..+..+ ..|.+++.+++|-+   +. ..|+.-....++.+|+..+|+.+.+.........
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence            5777777899999999998887666 56889999999976   33 4567777788999999999999988877667888


Q ss_pred             EEEEcc-CCCE-EEEEC-CeEEEEECCC-------CeeeEEeecCCC----------------C---------EEEEEEe
Q 008058          164 CMAVSS-DGKM-LATAA-GQLKTFNCSD-------HKKMQKFSGHPG----------------A---------VRFMTFS  208 (579)
Q Consensus       164 ~l~~~p-~g~~-l~~~~-g~i~vwd~~~-------~~~~~~~~~h~~----------------~---------v~~l~~~  208 (579)
                      |+.+.| |.+. .+.|+ |.+.+-+.-.       ++....-..|..                .         ...++|+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            899998 4444 44444 6665554321       222222222222                0         1234677


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          209 DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      |.-+.++... -.+.+.++|++-....   .+..++.. ..++.... +     |....|++...||.+.+|--+.
T Consensus       240 p~~rn~lfi~-~prellv~dle~~~~l---~vvpier~~akfv~vlP-~-----~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  240 PHWRNILFIT-FPRELLVFDLEYECCL---AVVPIERGGAKFVDVLP-D-----PRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhhceEEEE-eccceEEEcchhhcee---EEEEeccCCcceeEecc-C-----CCcceEEEEecCCeEEEEEeec
Confidence            7655444444 4788999999876643   22223222 22333321 1     5567899999999999996443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=1.5e-05  Score=74.65  Aligned_cols=200  Identities=14%  Similarity=0.160  Sum_probs=135.8

Q ss_pred             ceEEEEcc-CCCEEEEEeCCCc-EEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058            8 DILTSFSP-ALDYFAICSGDAR-IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         8 ~~~~~fs~-dg~~las~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .-.++.+| ++..++.+-.-|+ ..+||..+++....+....+...         .||       -.|.+.         
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF---------yGH-------g~fs~d---------   61 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF---------YGH-------GVFSPD---------   61 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE---------ecC-------EEEcCC---------
Confidence            34458899 5567777777665 67899999998887754332111         022       112111         


Q ss_pred             CcEEEEEECC-----CeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------------------CCCcE
Q 008058           86 SSLLVLGTGG-----GDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------------------ADGMV  141 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------------------~dg~v  141 (579)
                      +++|++.-++     |.|-|||.. +-+.+.++ ..|.-.-..+.+.|||+.|+.+.                  .+..+
T Consensus        62 G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL  140 (305)
T PF07433_consen   62 GRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL  140 (305)
T ss_pred             CCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence            6777776544     569999999 55566565 34666678899999998887762                  22345


Q ss_pred             EEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC--C-------eEEEEECCCCeeeEEe-------ecCCCC
Q 008058          142 CEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA--G-------QLKTFNCSDHKKMQKF-------SGHPGA  201 (579)
Q Consensus       142 ~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~--g-------~i~vwd~~~~~~~~~~-------~~h~~~  201 (579)
                      ...|..+|+.+....-    |...|..+++.++|..++..-  |       .|.+++-..  .+..+       ..-.+.
T Consensus       141 ~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y  218 (305)
T PF07433_consen  141 VYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGY  218 (305)
T ss_pred             EEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCc
Confidence            6667788888777432    666899999999998777654  2       355554433  22222       233477


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      +-+|++++++..+++++-.-+.+.+||..++...
T Consensus       219 ~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~  252 (305)
T PF07433_consen  219 IGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL  252 (305)
T ss_pred             eEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence            9999999999988887767889999999998744

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.77  E-value=4.9e-06  Score=78.19  Aligned_cols=188  Identities=21%  Similarity=0.292  Sum_probs=123.7

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ..+++.++++++.++.|..||..+|+.+..+..... ....   +                 ..        .+..++++
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~---~-----------------~~--------~~~~v~v~   82 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGA---P-----------------VV--------DGGRVYVG   82 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSG---E-----------------EE--------ETTEEEEE
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-ccce---e-----------------ee--------cccccccc
Confidence            344667788888999999999999999887764111 1100   0                 00        16678888


Q ss_pred             ECCCeEEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008058           93 TGGGDVLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------  161 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------  161 (579)
                      +.++.+..+|..+|+..++......   ..........++..++.+..++.|..+|+.+|+.+.........        
T Consensus        83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  162 (238)
T PF13360_consen   83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSF  162 (238)
T ss_dssp             ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEE
T ss_pred             cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeee
Confidence            8999999999999999888422111   11222333334788888888999999999999998887664422        


Q ss_pred             --eeEEEEccCCCEEEEEC-Ce-EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          162 --ISCMAVSSDGKMLATAA-GQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       162 --v~~l~~~p~g~~l~~~~-g~-i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                        +.+-....++..+++.. +. +.+ |+.+++.+....  ...+..+ ...++..++.++ .++.+..||+.+++.
T Consensus       163 ~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  163 SDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             TTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             cccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence              11222223454555544 54 555 999998664333  2223331 346677888877 699999999999874

...

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.75  E-value=1.5e-07  Score=88.53  Aligned_cols=160  Identities=11%  Similarity=0.134  Sum_probs=108.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCCCCeeEEEEccCCCEEEEEC--C---eEEEEECCCC
Q 008058          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDH  189 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~v~~l~~~p~g~~l~~~~--g---~i~vwd~~~~  189 (579)
                      .+..+.+++.+++++.+..+....++++.....    ...+.. ...-+++.+..+......+.  |   .+.+|....+
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            445566788889999988888877777654432    222222 22335555655555555544  4   5566665554


Q ss_pred             eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058          190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       190 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  269 (579)
                      .+ ..+-||-+.++.++|+||+++++++- .|..|++-.......+   ..+-++|.. .++..+.      -++..|++
T Consensus       143 ~~-~~~lGhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~I---esfclGH~e-FVS~isl------~~~~~LlS  210 (390)
T KOG3914|consen  143 RC-EPILGHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVI---ESFCLGHKE-FVSTISL------TDNYLLLS  210 (390)
T ss_pred             Cc-chhhhhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccch---hhhccccHh-heeeeee------ccCceeee
Confidence            43 34458999999999999999999875 7999998877665433   223444544 4444444      25677999


Q ss_pred             EEcCCeEEEEECCCceeecccC
Q 008058          270 ISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++.|+++++||+.+|+.+....
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCCCCcEEEEecccCCcccccc
Confidence            9999999999999999885543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.73  E-value=3.4e-06  Score=75.25  Aligned_cols=188  Identities=13%  Similarity=0.079  Sum_probs=127.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      .+||.|+.-|...+|...+.+....+ ..+...+.   ....          -|.             ...-+..++.|.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~---~~~r----------~cd-------------~~~~~~i~sndh  138 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVT---LVKR----------YCD-------------LKFPLNIASNDH  138 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchh---hhhh----------hcc-------------cccceeeccCCc
Confidence            48999999999999998866543222 11111111   0000          000             023378889999


Q ss_pred             eEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-c-eeeEee-cCCCCeeEEEEccCC
Q 008058           97 DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEIDPLTG-S-LLGKFR-ASTKGISCMAVSSDG  171 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~-~~~~~~-~~~~~v~~l~~~p~g  171 (579)
                      ++++.++..+......   |..  .+.++++++|++++++.+....|..|.+... + .+.+.. ...+.=.+..|+...
T Consensus       139 t~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~  215 (344)
T KOG4532|consen  139 TGKTMVVSGDSNKFAV---HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND  215 (344)
T ss_pred             ceeEEEEecCccccee---eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc
Confidence            9999988766543333   333  3889999999999999999999999987643 2 222222 223344678999999


Q ss_pred             CEEEEEC--CeEEEEECCCCeee-----EEeecCCCCEEEEEEecCCC--EEEEEecCCCeEEEEEcCCCccc
Q 008058          172 KMLATAA--GQLKTFNCSDHKKM-----QKFSGHPGAVRFMTFSDNGK--YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       172 ~~l~~~~--g~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~--~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ..+|++.  |++.|||++.....     .+-+.|.+.+..+.|++.|.  .|+.+ ..-+.+.+.|+++....
T Consensus       216 ~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~s-Ehfs~~hv~D~R~~~~~  287 (344)
T KOG4532|consen  216 LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFIS-EHFSRVHVVDTRNYVNH  287 (344)
T ss_pred             ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEe-cCcceEEEEEcccCcee
Confidence            9999998  99999999975332     22246899999999998654  34433 35678999999998643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=1.4e-08  Score=103.81  Aligned_cols=192  Identities=17%  Similarity=0.310  Sum_probs=136.0

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCE  143 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~i  143 (579)
                      ..++|+++.-.         .+.|++|+..|.|++|++.+|.....+ .+|.++|+-+.-+.||..+++.+.-.  ...+
T Consensus      1102 ~~fTc~afs~~---------~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1102 ALFTCIAFSGG---------TNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred             cceeeEEeecC---------CceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHH
Confidence            56777777654         678999999999999999999887665 68999999999999999877665433  4778


Q ss_pred             EeCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ec---CCCCEEEEEEecCCCEEEE
Q 008058          144 IDPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SG---HPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       144 wd~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~---h~~~v~~l~~~~~~~~l~s  216 (579)
                      |++.+ +...++|.+    -.++.|+.....-+.|.  ....+||++++..+.++ .+   ....-+...|+|+...++ 
T Consensus      1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred             hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence            99863 455555553    35788887644444444  68999999999877663 22   122236678999987664 


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                         +||  .+||++..+.+     ..+..-.... .     +.|+|.|..++.-++     |||+++.+.+...+..
T Consensus      1247 ---ndG--vLWDvR~~~aI-----h~FD~ft~~~-~-----G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAI-----HRFDQFTDYG-G-----GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred             ---eCc--eeeeeccHHHH-----hhhhhheecc-c-----ccccCCCceEEeech-----hhhhHHHHHHhcCccc
Confidence               577  58999987533     2222222111 1     223499999887664     9999999988766543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.69  E-value=7.6e-06  Score=90.46  Aligned_cols=187  Identities=12%  Similarity=0.198  Sum_probs=124.0

Q ss_pred             CcEEEEEECCCeEEEE----EccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---------
Q 008058           86 SSLLVLGTGGGDVLAL----AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---------  152 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iw----d~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------  152 (579)
                      ...++++..+|.|.++    +..+...  .....-..+|.+++||||+..++..+.++++.+.+- +...+         
T Consensus        87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   87 SESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD  163 (928)
T ss_pred             CCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence            5669999999999999    5555443  222234578999999999999999998998877642 11111         


Q ss_pred             ---------------eEeec------------------------CCCCeeEEEEccCCCEEEEEC--------CeEEEEE
Q 008058          153 ---------------GKFRA------------------------STKGISCMAVSSDGKMLATAA--------GQLKTFN  185 (579)
Q Consensus       153 ---------------~~~~~------------------------~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd  185 (579)
                                     ..|+|                        ....-..|+|-.||.++|+.+        ..++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                           11111                        112345788999999999875        3799998


Q ss_pred             CCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058          186 CSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       186 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      - .|....+-..-.+--..++|.|.|+.++++...  ...|.+|.-+..+..  ............+..+.|+     +|
T Consensus       244 R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg--eF~l~~~~~~~~v~~l~Wn-----~d  315 (928)
T PF04762_consen  244 R-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG--EFTLRFDPEEEKVIELAWN-----SD  315 (928)
T ss_pred             C-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee--eEecCCCCCCceeeEEEEC-----CC
Confidence            5 466554444334444578999999998887632  234666664443322  1222222445566778887     89


Q ss_pred             CcEEEEEEcCCeEEEEECCCc
Q 008058          264 GLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       264 ~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +..||....|. |.+|-..+.
T Consensus       316 s~iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  316 SEILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             CCEEEEEecCC-ceEEEeeCC
Confidence            99999977655 999976554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.67  E-value=7.8e-06  Score=84.44  Aligned_cols=193  Identities=16%  Similarity=0.188  Sum_probs=129.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +|++.+..++.|+.+|.|.+.+- +-+..+.|+.+...+....+..+                          +..+|++
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~--------------------------~~~~L~s   82 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN--------------------------KQNFLFS   82 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc--------------------------CceEEEE
Confidence            78899999999999998888773 24444667655544222222221                          0345555


Q ss_pred             EECCC-----eEEEEEccCC------eEE--EEec----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe--CCCCcee
Q 008058           92 GTGGG-----DVLALAVSAG------QLK--WRLS----DCHPGGVSAISFATHGSCIYSAGADGMVCEID--PLTGSLL  152 (579)
Q Consensus        92 ~~~~g-----~i~iwd~~~~------~~~--~~~~----~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd--~~~~~~~  152 (579)
                      ...|+     .+++|++..-      .++  .++.    .....++.+++.+.+-+.+++|-.+|.|..+.  +...+-.
T Consensus        83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen   83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS  162 (933)
T ss_pred             EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc
Confidence            55443     3999998642      222  1221    11356789999999989999999999999884  2211111


Q ss_pred             eE--eecCCCCeeEEEEccCCCE--EEEECCeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          153 GK--FRASTKGISCMAVSSDGKM--LATAAGQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       153 ~~--~~~~~~~v~~l~~~p~g~~--l~~~~g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      +.  ......+|+.+++..+++.  +++....|.+|.+....+ ...+..|..++.|-.|++....+++++  +..+.+|
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY  240 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFY  240 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEE
Confidence            22  2223459999999998887  444449999999984442 455777888899999987766566664  5689999


Q ss_pred             EcCCCc
Q 008058          228 RTDGVK  233 (579)
Q Consensus       228 d~~~~~  233 (579)
                      +....+
T Consensus       241 ~sd~~~  246 (933)
T KOG2114|consen  241 DSDGRG  246 (933)
T ss_pred             cCCCcc
Confidence            987654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.67  E-value=1.1e-05  Score=75.57  Aligned_cols=194  Identities=19%  Similarity=0.297  Sum_probs=133.1

Q ss_pred             CcEEEEEECCCe-EEEEEccCCeEEEEecCCCCCCEE--EEEEccCCCEEEEEe-----CCCcEEEEeCC-CCceeeEee
Q 008058           86 SSLLVLGTGGGD-VLALAVSAGQLKWRLSDCHPGGVS--AISFATHGSCIYSAG-----ADGMVCEIDPL-TGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~-i~iwd~~~~~~~~~~~~~h~~~V~--~l~~~~~~~~l~s~~-----~dg~v~iwd~~-~~~~~~~~~  156 (579)
                      ...++++-.-|+ ..+||..+++....+.. ..+.-.  --.|++||++|++.=     ..|.|-+||.. +.+.+..|.
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a-~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~   95 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA-PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP   95 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcC-CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec
Confidence            556777777777 88899999987755532 122111  247999999999873     45789999998 667888898


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-C-------------------eEEEEECCCCeeeEE--e--ecCCCCEEEEEEecCCC
Q 008058          157 ASTKGISCMAVSSDGKMLATAA-G-------------------QLKTFNCSDHKKMQK--F--SGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-g-------------------~i~vwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~  212 (579)
                      .+.-....+.+.|||+.|+++. |                   ++...|..+|+.+.+  +  .-|...|..+++.++|.
T Consensus        96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~  175 (305)
T PF07433_consen   96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT  175 (305)
T ss_pred             CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence            8887888999999998888875 1                   255567788887766  4  33778899999999997


Q ss_pred             EEEEEecCCC-------eEEEEEcCCCccccceeEEee-----ecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEE
Q 008058          213 YVLSSAVGER-------YIALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW  279 (579)
Q Consensus       213 ~l~s~s~~d~-------~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw  279 (579)
                      .++..- ..+       -+.+++....  .   ..+..     ..-...+.+++++     +++.++++.+- .|.+.+|
T Consensus       176 V~~a~Q-~qg~~~~~~PLva~~~~g~~--~---~~~~~p~~~~~~l~~Y~gSIa~~-----~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  176 VAFAMQ-YQGDPGDAPPLVALHRRGGA--L---RLLPAPEEQWRRLNGYIGSIAAD-----RDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             EEEEEe-cCCCCCccCCeEEEEcCCCc--c---eeccCChHHHHhhCCceEEEEEe-----CCCCEEEEECCCCCEEEEE
Confidence            655432 333       1333332221  1   00111     1123455667776     78888766654 7799999


Q ss_pred             ECCCceeecccC
Q 008058          280 YGQNIEELRNTK  291 (579)
Q Consensus       280 d~~~~~~~~~~~  291 (579)
                      |..+++.+....
T Consensus       245 d~~tg~~~~~~~  256 (305)
T PF07433_consen  245 DAATGRLLGSVP  256 (305)
T ss_pred             ECCCCCEeeccc
Confidence            999998876543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=1.5e-07  Score=86.69  Aligned_cols=141  Identities=15%  Similarity=0.272  Sum_probs=108.6

Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCCCCeeE
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRASTKGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~  164 (579)
                      ++.+.+-.|.+-|+.+|-.. .+  ...+.|.++.|...++.++.|..+|.|..+|++.+     .+.+.+. |...|++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            45556667888888887653 22  25578999999998999999999999999999865     3444444 7888999


Q ss_pred             EEEcc-CCCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEE--EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          165 MAVSS-DGKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFM--TFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       165 l~~~p-~g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l--~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      +..-. ++++|.+.+  |.|++||++.-++   +.++.||...-.-+  -+.+....++++| +|...+||.++.+...
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDSGHLL  381 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEecccCcee
Confidence            88776 666776666  9999999997666   88999997654443  3456667888887 7999999999998754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.58  E-value=1.3e-06  Score=90.51  Aligned_cols=183  Identities=15%  Similarity=0.224  Sum_probs=134.2

Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      ++..++.|+-...+..+|+.+.+......- ..+.|+-++.  +++++++|...|+|.+-|..+.+.++++.+|.+.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV-SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec-cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            467788888888899999999887654422 2334666655  6889999999999999999999999999999999877


Q ss_pred             EEEccCCCEEEEEC---C--------eEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCC
Q 008058          165 MAVSSDGKMLATAA---G--------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g--------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +..  .|+.|++++   +        -|+|||++..+.+.-+.-+.++ .-+.|+|.- ..+++++ ..|...+-|..+.
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S-~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS-QSGQFQFVDTATL  298 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe-cccceeecccccc
Confidence            665  588898887   1        4899999988877666656555 557888853 3455555 5888888884433


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      .... ..++........+....++     ++|..++.|..+|.|.+|.
T Consensus       299 sNP~-~~~~~v~p~~s~i~~fDiS-----sn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  299 SNPP-AGVKMVNPNGSGISAFDIS-----SNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCc-cceeEEccCCCcceeEEec-----CCCceEEEecccCcEeeec
Confidence            2211 1112222222335666666     8999999999999999997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.57  E-value=1.5e-06  Score=87.51  Aligned_cols=276  Identities=13%  Similarity=0.159  Sum_probs=168.3

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeE--------------EEEecCCCCCCEEEEEEccCCCE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL--------------KWRLSDCHPGGVSAISFATHGSC  131 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~--------------~~~~~~~h~~~V~~l~~~~~~~~  131 (579)
                      ....|+.|...         ..+++.|+.||.+++..+.+...              ..+.+.||.+.|.-+.|+.+.+.
T Consensus        15 vkL~c~~WNke---------~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK   85 (1189)
T KOG2041|consen   15 VKLHCAEWNKE---------SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK   85 (1189)
T ss_pred             ceEEEEEEccc---------CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc
Confidence            34568889775         67899999999999988765311              22345799999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeecCCCCEEEEE
Q 008058          132 IYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSGHPGAVRFMT  206 (579)
Q Consensus       132 l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-~~~~~h~~~v~~l~  206 (579)
                      |-+...+|.|.+|-+-.|.-...+.  ..+.-|.+++|+.||..++...  |.|.+=.++..+.. +.+++  .....+.
T Consensus        86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~  163 (1189)
T KOG2041|consen   86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL  163 (1189)
T ss_pred             ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence            9999999999999987775333221  1345789999999999888775  77766655443321 12222  2244789


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCcccc--ceeEEee----ecCceeeEeEEecCC---cccCCCcEEEEEEcCCeEE
Q 008058          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQS--ASCVLAM----EHPAVFMDCRCIDNG---GVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       207 ~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~l~s~~~dg~i~  277 (579)
                      |++|.+.++.+- ..|.+.+||.+..-...  ..|....    ..-+..+....|...   ...|+...++++-..|.+.
T Consensus       164 ws~D~~~~Lf~~-ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  164 WSEDLEQALFKK-ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             ecccHHHHHhhh-cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence            999998777664 68999999987653211  1121111    111111222222211   1236888999999999998


Q ss_pred             EEECCCc-eeecccCCceEEeeecccCcccccccchhhhhccccceecC----CceEEEEEeCCCCCceeEEEecCCCCc
Q 008058          278 IWYGQNI-EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKP----ASVHTFVAYGLLLKPSFQKILVNSGED  352 (579)
Q Consensus       278 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~h~~~v  352 (579)
                      |-.-.+. +++---.+.+  +. ...+++++.    .++.++.+.....    ...+...++|    ....++......+
T Consensus       243 iMR~eND~~Pvv~dtgm~--~v-gakWnh~G~----vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~gtlkvpg~~I  311 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVDTGMK--IV-GAKWNHNGA----VLAVCGNDSDADEPTDSNKVHFYSPYG----HIVGTLKVPGSCI  311 (1189)
T ss_pred             hhhhcCCCCCeEEecccE--ee-cceecCCCc----EEEEccCcccccCccccceEEEeccch----hheEEEecCCcee
Confidence            8753322 1111111111  00 112344544    5555555432111    1122333343    3344666777788


Q ss_pred             EEEeecCCccee
Q 008058          353 INLNCSQDGVLL  364 (579)
Q Consensus       353 ~~~~~s~dg~~l  364 (579)
                      +.++|-..|.-+
T Consensus       312 t~lsWEg~gLri  323 (1189)
T KOG2041|consen  312 TGLSWEGTGLRI  323 (1189)
T ss_pred             eeeEEcCCceEE
Confidence            888888777665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.55  E-value=0.00011  Score=66.99  Aligned_cols=195  Identities=12%  Similarity=0.129  Sum_probs=118.2

Q ss_pred             EEEEECCCeEEEEEccCC--eEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC------
Q 008058           89 LVLGTGGGDVLALAVSAG--QLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS------  158 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~--~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~------  158 (579)
                      +++...|..|-|=..+.+  .++  .++.+.....=+-++|+||+..|+.+...|+|++||+.. ..+..+...      
T Consensus        11 ~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d   89 (282)
T PF15492_consen   11 LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGD   89 (282)
T ss_pred             EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCc
Confidence            444555566666554432  111  123333444567899999999999999999999999864 433343321      


Q ss_pred             -CCCeeEEEEccC-------CCEEEEEC-CeEEEEECCC-----CeeeEEee---cCCCCEEEEEEecCCCEEEEEecCC
Q 008058          159 -TKGISCMAVSSD-------GKMLATAA-GQLKTFNCSD-----HKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       159 -~~~v~~l~~~p~-------g~~l~~~~-g~i~vwd~~~-----~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                       ...|..+.|.+-       ..+++... |.++-|-+..     .+...+|.   .+...|.++.++|..+.|+.+|...
T Consensus        90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~  169 (282)
T PF15492_consen   90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ  169 (282)
T ss_pred             cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence             235666666542       23555554 7776665432     22333332   2467899999999999888887533


Q ss_pred             Ce----------EEEEEcCCCcccc---------------ceeEEee---------ecCceeeEeEEecCCcccCCCcEE
Q 008058          222 RY----------IALWRTDGVKKQS---------------ASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       222 ~~----------i~vwd~~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                      ..          +..|.+-++..--               ....+.+         ......+--+..+     |||..|
T Consensus       170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS-----Pdg~~L  244 (282)
T PF15492_consen  170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS-----PDGSLL  244 (282)
T ss_pred             CCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEEC-----CCCCEE
Confidence            22          5667664432110               0000000         0112222333444     999999


Q ss_pred             EEEEcCCeEEEEECCCceeecc
Q 008058          268 LAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       268 ~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      |+...+|.|.+|++.+.+..+.
T Consensus       245 a~ih~sG~lsLW~iPsL~~~~~  266 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPSLRLQRS  266 (282)
T ss_pred             EEEEcCCeEEEEecCcchhhcc
Confidence            9999999999999998877654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.54  E-value=4e-07  Score=58.09  Aligned_cols=39  Identities=23%  Similarity=0.604  Sum_probs=36.3

Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ++++.++.+|.++|++|+|+|++.+|++++ .|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGS-SDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence            367889999999999999999999999998 799999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.53  E-value=0.00026  Score=63.36  Aligned_cols=141  Identities=21%  Similarity=0.263  Sum_probs=96.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      ..+++.|+-.+.+.--|..+|....+-.-                   ...+.+-+..-          ++++++|+.+|
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-------------------g~RiE~sa~vv----------gdfVV~GCy~g   73 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-------------------GVRIECSAIVV----------GDFVVLGCYSG   73 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-------------------CceeeeeeEEE----------CCEEEEEEccC
Confidence            35777888888888899999987764321                   00010101010          78899999999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc-CCCEEE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS-DGKMLA  175 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~  175 (579)
                      .+++.+..+|...+.+.....-.+. ....+++..++.++.|++.+..|.++..++.+.+...+...+-++.| ++.+.+
T Consensus        74 ~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~  152 (354)
T KOG4649|consen   74 GLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYA  152 (354)
T ss_pred             cEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEE
Confidence            9999999999877666432222222 23467899999999999999999999999988776665555566666 565555


Q ss_pred             EEC-CeEEEEECC
Q 008058          176 TAA-GQLKTFNCS  187 (579)
Q Consensus       176 ~~~-g~i~vwd~~  187 (579)
                      +.. |.+.--...
T Consensus       153 a~t~G~vlavt~~  165 (354)
T KOG4649|consen  153 AITAGAVLAVTKN  165 (354)
T ss_pred             EeccceEEEEccC
Confidence            444 655444433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=1.4e-06  Score=77.34  Aligned_cols=190  Identities=11%  Similarity=0.123  Sum_probs=111.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEE----------ccCCCEEEEEeCCCcEEEEeCCCCcee-e
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISF----------ATHGSCIYSAGADGMVCEIDPLTGSLL-G  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~----------~~~~~~l~s~~~dg~v~iwd~~~~~~~-~  153 (579)
                      ...|+.+..++.+..+...++.+...... .-.++..+++.          +--+..+++++.||.+.+++.+.-..+ +
T Consensus        47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~  126 (319)
T KOG4714|consen   47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS  126 (319)
T ss_pred             hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence            34567777777666665554443311100 01122222222          223567899999999999997642111 1


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          154 KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      .+......-.+.+....++.+.++.       +..+.|+++..+.+..-......|++++-+|..+.++.+|.+||.+.+
T Consensus       127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l  206 (319)
T KOG4714|consen  127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGL  206 (319)
T ss_pred             hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEE
Confidence            1111111222333444566776665       456777776543322111122348999999988888888879999999


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      ||.+.....    +-.+..+...+.-+.|.+    .++..|+++++||.+.-||..+
T Consensus       207 ~d~rn~~~p----~S~l~ahk~~i~eV~FHp----k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  207 WDARNVAMP----VSLLKAHKAEIWEVHFHP----KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEcccccch----HHHHHHhhhhhhheeccC----CCchheeEecCCCcEEEEcCCC
Confidence            999987433    112223333444444542    5788999999999999999765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.50  E-value=7.2e-06  Score=83.55  Aligned_cols=188  Identities=13%  Similarity=0.170  Sum_probs=128.9

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .||++.-.|.|.+||...+..+..+..+..                  .+..++|.+.....     ..+|++-.....|
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~------------------~~qdl~W~~~rd~S-----rd~LlaIh~ss~l  137 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSND------------------SVQDLCWVPARDDS-----RDVLLAIHGSSTL  137 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCc------------------chhheeeeeccCcc-----hheeEEecCCcEE
Confidence            577777789999999998888777764443                  33456776654331     3678888888999


Q ss_pred             EEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCceeeEeecCCC----------
Q 008058           99 LALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-------TGSLLGKFRASTK----------  160 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~-------~~~~~~~~~~~~~----------  160 (579)
                      .+|+..+|+..+....+| ....|+.+.| |.+.+..-+..|.|.+-+.-       .|+.++.-..|..          
T Consensus       138 vLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at  216 (1062)
T KOG1912|consen  138 VLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETAT  216 (1062)
T ss_pred             EEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhc
Confidence            999999999998886544 4677899998 66677777777877776542       1233222222211          


Q ss_pred             ---------------CeeEEEEccCCC-EEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC--EEEEEecCC
Q 008058          161 ---------------GISCMAVSSDGK-MLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK--YVLSSAVGE  221 (579)
Q Consensus       161 ---------------~v~~l~~~p~g~-~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~s~~d  221 (579)
                                     ....++|+|.-+ .+...- ..+.++|++-..++....-..+.+.-+.+-|+++  .|+.. ..|
T Consensus       217 ~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl-H~n  295 (1062)
T KOG1912|consen  217 GNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL-HSN  295 (1062)
T ss_pred             cccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE-ecC
Confidence                           011245677543 333333 8999999998888888776677777788888754  34444 579


Q ss_pred             CeEEEEEcCC
Q 008058          222 RYIALWRTDG  231 (579)
Q Consensus       222 ~~i~vwd~~~  231 (579)
                      |.+.+|--+.
T Consensus       296 G~ltirvrk~  305 (1062)
T KOG1912|consen  296 GRLTIRVRKE  305 (1062)
T ss_pred             CeEEEEEeec
Confidence            9999997654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=6e-07  Score=82.82  Aligned_cols=151  Identities=14%  Similarity=0.160  Sum_probs=112.1

Q ss_pred             EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC-----eeeEEeecCCCCEEEE
Q 008058          133 YSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH-----KKMQKFSGHPGAVRFM  205 (579)
Q Consensus       133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~-----~~~~~~~~h~~~v~~l  205 (579)
                      ++.+.+-.|-+-|+.+|.. +.|. .+..|.++.|...++++..|.  |.|..+|++++     .+...+. |.+.|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence            5566777888999887743 3344 566889999998899999998  89999999875     3344444 88999998


Q ss_pred             EEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          206 TFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       206 ~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ..-. ++++|++++ .+|+|++||.+..+...  .+...+.|........+   .+++....|+++++|...+||.++.+
T Consensus       305 q~Lq~s~q~LmaS~-M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~~---~v~~eeg~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  305 QILQFSQQKLMASD-MTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLPA---HVKEEEGSIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhccccceEeecc-CcCceeEeeehhhhccc--ceeeeeccccccccccc---ccccccceEEEccCeeEEEEEecccC
Confidence            7766 677888876 79999999999877532  23444444333222222   23467788999999999999999999


Q ss_pred             eeecccCC
Q 008058          285 EELRNTKA  292 (579)
Q Consensus       285 ~~~~~~~~  292 (579)
                      ..+.+.+.
T Consensus       379 hLl~tipf  386 (425)
T KOG2695|consen  379 HLLCTIPF  386 (425)
T ss_pred             ceeeccCC
Confidence            98887653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.47  E-value=6.8e-07  Score=90.20  Aligned_cols=199  Identities=21%  Similarity=0.281  Sum_probs=132.5

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +..|.++  .|+|.. ..+|+++.|..+..||+.+-.. +..+..                  -....+-++|...+|. 
T Consensus       114 sraitd~--n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~------------------w~s~asqVkwnyk~p~-  172 (1081)
T KOG0309|consen  114 SRAITDI--NFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS------------------WRSAASQVKWNYKDPN-  172 (1081)
T ss_pred             ccceecc--ccCCCCCcceeeccccccceeeeccCCCcceeeeec------------------ccccCceeeecccCcc-
Confidence            4566445  888865 5899999999999999986543 333221                  1234456778776544 


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK-FRAS  158 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~  158 (579)
                              +.+.+....|.+||.+.|.......++|...|+.+.|+.- ...+.+++.||+|+.||......... ....
T Consensus       173 --------vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt  244 (1081)
T KOG0309|consen  173 --------VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT  244 (1081)
T ss_pred             --------hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence                    5666667779999999887655566789999999999763 33588999999999999864322211 1112


Q ss_pred             CCCeeEEEEccCCCEEEE----ECCeEEE---------EECCC-CeeeEEeecCCCCEEEEEEecCC--------C--EE
Q 008058          159 TKGISCMAVSSDGKMLAT----AAGQLKT---------FNCSD-HKKMQKFSGHPGAVRFMTFSDNG--------K--YV  214 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~----~~g~i~v---------wd~~~-~~~~~~~~~h~~~v~~l~~~~~~--------~--~l  214 (579)
                      ..+|..-.+.|=|+-.+.    |++.+.+         |+..+ .+++.+|.||...|....|-..+        +  .|
T Consensus       245 ~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL  324 (1081)
T KOG0309|consen  245 NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL  324 (1081)
T ss_pred             cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence            346666666665443332    2233333         33333 36789999999988776664322        1  46


Q ss_pred             EEEecCCCeEEEEEcCC
Q 008058          215 LSSAVGERYIALWRTDG  231 (579)
Q Consensus       215 ~s~s~~d~~i~vwd~~~  231 (579)
                      ++=+ .|.++++|-+..
T Consensus       325 VTWS-kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  325 VTWS-KDQTLRLWPIDS  340 (1081)
T ss_pred             EEee-cCCceEeeeccH
Confidence            6665 799999998754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.45  E-value=4.2e-05  Score=77.34  Aligned_cols=217  Identities=11%  Similarity=0.094  Sum_probs=119.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -.+.++|+|++++.++ ||.-.|+.....+....                       ......+|.+.          +.
T Consensus        36 ~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----------------------G~g~~~vw~~~----------n~   81 (443)
T PF04053_consen   36 QSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----------------------GSGLSFVWSSR----------NR   81 (443)
T ss_dssp             SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----------------------EE-SEEEE-TS----------SE
T ss_pred             eeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----------------------CceeEEEEecC----------cc
Confidence            3459999999999865 78888888554443321                       12345667662          33


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++-..+++|.++.--+++....+...  ..+..+-.   |..|...+.+ .|.+||..+++.++.+...  +|..+.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence            677777888999743333322222221  23444433   7777776544 7999999999999998743  48999999


Q ss_pred             cCCCEEEEEC-CeEEEEECCCC-----------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          169 SDGKMLATAA-GQLKTFNCSDH-----------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       169 p~g~~l~~~~-g~i~vwd~~~~-----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      ++|++++..+ ..+++++....           ..+..+..-...|.+..|..+  .++.+. .. .++.  +-.++.. 
T Consensus       154 ~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~lkY--l~~Ge~~-  226 (443)
T PF04053_consen  154 DDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HLKY--LVNGETG-  226 (443)
T ss_dssp             TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EEEE--EETTEEE-
T ss_pred             CCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eEEE--EEcCCcc-
Confidence            9999999988 88888875432           133344333577899999876  455544 23 7776  4444422 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                        .+..+   +..+..+.+.     +....+.....|+.+..+.++..
T Consensus       227 --~i~~l---d~~~yllgy~-----~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  227 --IIAHL---DKPLYLLGYL-----PKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             --EEEE----SS--EEEEEE-----TTTTEEEEE-TT--EEEEE--HH
T ss_pred             --eEEEc---CCceEEEEEE-----ccCCEEEEEECCCCEEEEEECHH
Confidence              22333   3334444444     66678888888888888876544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.43  E-value=8.2e-07  Score=56.62  Aligned_cols=38  Identities=18%  Similarity=0.378  Sum_probs=33.6

Q ss_pred             eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058          107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus       107 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd  145 (579)
                      +++..+ .+|.+.|++++|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            344444 68999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.6e-05  Score=75.12  Aligned_cols=240  Identities=14%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             CCCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ...-||++  +|||..+ ++..++.+..|+|.|+++..++..+..+                   ...-+++|.-.+   
T Consensus       192 ~g~~Irdl--afSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------~~~wSC~wDlde---  247 (463)
T KOG1645|consen  192 EGSFIRDL--AFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------NQIWSCCWDLDE---  247 (463)
T ss_pred             cchhhhhh--ccCccccceeeeeccCceEEEEecccceeeeheecc-------------------CCceeeeeccCC---
Confidence            34568888  9999887 7888999999999999998888777543                   123345666554   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCC--CCCCEEEEEEc------cCCCEEEEEeCCCcEEEEeCC--CCc
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC--HPGGVSAISFA------THGSCIYSAGADGMVCEIDPL--TGS  150 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~------~~~~~l~s~~~dg~v~iwd~~--~~~  150 (579)
                           .++|+.|..+|.|.+||++..+-......+  ...+|..++.-      +.|..++..+.+  ...|...  .+.
T Consensus       248 -----~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~  320 (463)
T KOG1645|consen  248 -----RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC  320 (463)
T ss_pred             -----cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC
Confidence                 678999999999999999865532111111  23455554433      234444444433  4455543  222


Q ss_pred             eeeEee-cCCCCeeEEEEccCCCEEEEEC---------CeEEE-EECCCCeeeEEe-ecCC-CC---E---EEEEEecCC
Q 008058          151 LLGKFR-ASTKGISCMAVSSDGKMLATAA---------GQLKT-FNCSDHKKMQKF-SGHP-GA---V---RFMTFSDNG  211 (579)
Q Consensus       151 ~~~~~~-~~~~~v~~l~~~p~g~~l~~~~---------g~i~v-wd~~~~~~~~~~-~~h~-~~---v---~~l~~~~~~  211 (579)
                      .....+ +..+...++..++..+.++...         ..|-. -|-.+|..+..- .+|. ++   +   ..+.-.++.
T Consensus       321 ~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  321 LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            222222 1245566777777556555543         11222 123344443322 1221 11   1   112224566


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ++++..+...+.+.+||..+.+.     +.++.-...+.+...+.    ...+.+|++-+ |..++||..+
T Consensus       401 n~iv~~gd~tn~lil~D~~s~ev-----vQ~l~~~epv~Dicp~~----~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGDSTNELILQDPHSFEV-----VQTLALSEPVLDICPND----TNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             cEEEEecCCcceeEEeccchhhe-----eeecccCcceeecceee----cCCcchhhhee-cceEEEEecC
Confidence            77777765668899999998763     34555555555555554    12344555544 5678888654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2e-07  Score=95.75  Aligned_cols=185  Identities=15%  Similarity=0.114  Sum_probs=128.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .|++||-+.++|+.|+..|.|+++++.+|.....+.+|.+.++.+.-+.+                           +..
T Consensus      1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d---------------------------gs~ 1157 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD---------------------------GST 1157 (1516)
T ss_pred             eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC---------------------------cce
Confidence            57799999999999999999999999999988888888877765443333                           444


Q ss_pred             EEEEEC-CC-eEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ec---CCCC
Q 008058           89 LVLGTG-GG-DVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RA---STKG  161 (579)
Q Consensus        89 l~~~~~-~g-~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~---~~~~  161 (579)
                      .++.+. +. ...+|++.. +.....+     ..-.++.|+.....-+.|..-....+||++++....++ .+   ....
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYS 1232 (1516)
T ss_pred             eeeeccccCchHHHhccccccCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhh
Confidence            444433 33 378899865 2222222     23467788765444334444456889999999877763 22   1223


Q ss_pred             eeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          162 ISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      -++..|+|+.++++--+   .+||++..+.+..|...... ..=.|+|.|..++.-+      .|||+++-+..
T Consensus      1233 ~n~a~FsP~D~LIlndG---vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS------EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLILNDG---VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS------EIWDMRTFKLL 1296 (1516)
T ss_pred             ccccccCCCcceEeeCc---eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec------hhhhhHHHHHH
Confidence            37788999887776443   78999988877777644422 2347999999988764      48999986543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.40  E-value=9.3e-05  Score=77.11  Aligned_cols=233  Identities=18%  Similarity=0.236  Sum_probs=138.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecccccccccc-ccccccccccccCccceEEeeecccccccccCCcEEEEEE---
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTS-LYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT---   93 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~---   93 (579)
                      ..++.++.+|.|.-+|.++|+.+..+.......... ..+.+            ..+            +..+++++   
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP------------~v~------------~~~v~vg~~~~  166 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP------------TIV------------KKLVIIGSSGA  166 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC------------EEE------------CCEEEEecccc
Confidence            577788889999999999999988776332110000 00000            000            34455554   


Q ss_pred             ------CCCeEEEEEccCCeEEEEecCCCCC-------------------CE-EEEEEccCCCEEEEEeCCC--------
Q 008058           94 ------GGGDVLALAVSAGQLKWRLSDCHPG-------------------GV-SAISFATHGSCIYSAGADG--------  139 (579)
Q Consensus        94 ------~~g~i~iwd~~~~~~~~~~~~~h~~-------------------~V-~~l~~~~~~~~l~s~~~dg--------  139 (579)
                            .+|.+..+|..+|+..++.......                   .| ....+.+.+..++.++.++        
T Consensus       167 ~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~  246 (488)
T cd00216         167 EFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGR  246 (488)
T ss_pred             ccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCc
Confidence                  3578999999999998876432211                   11 1234555567788887665        


Q ss_pred             ----------cEEEEeCCCCceeeEeecCCCCe------eEEEEc----cCCC---EEEEEC--CeEEEEECCCCeeeEE
Q 008058          140 ----------MVCEIDPLTGSLLGKFRASTKGI------SCMAVS----SDGK---MLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       140 ----------~v~iwd~~~~~~~~~~~~~~~~v------~~l~~~----p~g~---~l~~~~--g~i~vwd~~~~~~~~~  194 (579)
                                .|..+|..+|+.+..++......      ....+.    -+|.   .++.++  |.++..|.++|+.+..
T Consensus       247 ~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~  326 (488)
T cd00216         247 RTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA  326 (488)
T ss_pred             cCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence                      79999999999888765321111      111111    1333   455555  8999999999998876


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEe-----------------cCCCeEEEEEcCCCccccceeEEeeecC---------ce
Q 008058          195 FSGHPGAVRFMTFSDNGKYVLSSA-----------------VGERYIALWRTDGVKKQSASCVLAMEHP---------AV  248 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~~~~~l~s~s-----------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~---------~~  248 (579)
                      ....   ...+..+| + .++..+                 ..++.+.-.|..+++..     ......         ..
T Consensus       327 ~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~-----W~~~~~~~~~~~~~g~~  396 (488)
T cd00216         327 RPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV-----WEKREGTIRDSWNIGFP  396 (488)
T ss_pred             eEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe-----eEeeCCccccccccCCc
Confidence            5421   11223333 2 222211                 13577888888887643     222211         00


Q ss_pred             eeE-eEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          249 FMD-CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       249 ~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ... ...       ..+..|++++.||.++.+|.++|+.+...+
T Consensus       397 ~~~~~~~-------~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         397 HWGGSLA-------TAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             ccCcceE-------ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            000 111       245788899999999999999999886654

The alignment model contains an 8-bladed beta-propeller.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=1.9e-05  Score=81.05  Aligned_cols=175  Identities=15%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.+++.|+-+|.|++++....- . +. ..|+..      ..+|.++++|+.||+|.+..+-+.+...++. ...++.++
T Consensus        49 ~~~~~~GtH~g~v~~~~~~~~~-~-~~-~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi  118 (846)
T KOG2066|consen   49 DKFFALGTHRGAVYLTTCQGNP-K-TN-FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI  118 (846)
T ss_pred             cceeeeccccceEEEEecCCcc-c-cc-cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence            7789999999999999976553 1 11 235433      5689999999999999999998888877765 45689999


Q ss_pred             EEccC-----CCEEEEEC--CeEEEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          166 AVSSD-----GKMLATAA--GQLKTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       166 ~~~p~-----g~~l~~~~--g~i~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      +++|+     .+.+++|+  | +.++.-+-  .+.-..+....++|.++.|.  |.+++-+. ++| |++||...++...
T Consensus       119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~G-v~vyd~~~~~~l~  193 (846)
T KOG2066|consen  119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDG-VKVYDTPTRQRLT  193 (846)
T ss_pred             EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCC-cEEEeccccceee
Confidence            99997     56788888  6 77765321  11111355667999999997  66888875 455 9999998876431


Q ss_pred             cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ... -.....+.....-..|.      +...|+. +...+|+|..++
T Consensus       194 ~i~~p~~~~R~e~fpphl~W~------~~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  194 NIPPPSQSVRPELFPPHLHWQ------DEDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             ccCCCCCCCCcccCCCceEec------CCCeEEE-ecCCeEEEEEEe
Confidence            000 00011122222234442      3444544 455578888776

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.30  E-value=1.2e-05  Score=83.47  Aligned_cols=179  Identities=17%  Similarity=0.189  Sum_probs=124.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+..|+-...+..+|..+++.........+                  .++.+.-           +++.+..|...
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~------------------~v~imR~-----------Nnr~lf~G~t~  196 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS------------------GVTIMRY-----------NNRNLFCGDTR  196 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCC------------------ceEEEEe-----------cCcEEEeeccc
Confidence            345566777666777788887776554321111                  1111111           26889999999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      |+|.+-|+.+.+.+.++ ..|++.|.++..  .|+.|++||.         |.-|++||++..+.+.-+.-+.++ .-+.
T Consensus       197 G~V~LrD~~s~~~iht~-~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr  272 (1118)
T KOG1275|consen  197 GTVFLRDPNSFETIHTF-DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR  272 (1118)
T ss_pred             ceEEeecCCcCceeeee-eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh
Confidence            99999999999999777 689999998877  6889998874         445899999987776665555443 5567


Q ss_pred             EccCC-CEEEEEC--CeEEEEEC---CCCe-eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          167 VSSDG-KMLATAA--GQLKTFNC---SDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       167 ~~p~g-~~l~~~~--g~i~vwd~---~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      |+|.- ..+++++  |...+-|.   .+.. .+..+..-.+.+..+.++++|..++.+- .+|.|.+|.
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd-~~g~v~~wa  340 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD-HEGHVNLWA  340 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec-ccCcEeeec
Confidence            77742 2333333  99999883   3321 1233333445599999999999998876 799999997

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.00084  Score=66.99  Aligned_cols=304  Identities=12%  Similarity=0.082  Sum_probs=146.6

Q ss_pred             ccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           14 SPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        14 s~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      |||+++++...         ..+.+.|||+.+++.......                   ........|.|.        
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-------------------~~~~~~~~~sP~--------   53 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-------------------PPKLQDAKWSPD--------   53 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-------------------ETTBSEEEE-SS--------
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-------------------ccccccceeecC--------
Confidence            68998887742         246788999998776543221                   122334555554        


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCC----------------CCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH----------------PGGVSAISFATHGSCIYSAGA-DGMVCEIDPL  147 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h----------------~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~  147 (579)
                       ++.++... ++.|.+++..++....-...|.                -+.-.++.|+|||++|+.... +..|..+.+.
T Consensus        54 -g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   54 -GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             -STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             -CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence             55566554 5789999988886553333331                112356789999999887653 3444444321


Q ss_pred             CCceeeEeecCCC---CeeEEEEccCCCEEEEECCeEEEEECCCCeeeE-Ee----ecCCCCEEEEEEecCCCEEEE-Ee
Q 008058          148 TGSLLGKFRASTK---GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQ-KF----SGHPGAVRFMTFSDNGKYVLS-SA  218 (579)
Q Consensus       148 ~~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~-~~----~~h~~~v~~l~~~~~~~~l~s-~s  218 (579)
                      .      +.....   .+..+.+---|.--  ..-.+.|+|+.+++... ..    ..-...+..+.|.++++.++. -.
T Consensus       132 ~------~~~~~~~yp~~~~~~YPk~G~~n--p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~  203 (353)
T PF00930_consen  132 D------YSPPDSQYPEVESIRYPKAGDPN--PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL  203 (353)
T ss_dssp             E------ESSSTESS-EEEEEE--BTTS-----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             c------cCCccccCCcccccccCCCCCcC--CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence            1      110110   22233332111111  00257888998876532 11    123456889999999983333 32


Q ss_pred             cCCC---eEEEEEcCCCccccceeEEeeecCcee---eEeEEecCCcccCCCcEEEEEEcCC--eEEEEECCCceeeccc
Q 008058          219 VGER---YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRNT  290 (579)
Q Consensus       219 ~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  290 (579)
                      ..+.   .+.++|..++...   .+........+   -....+.    ..++.++.....||  .|++++...+.... +
T Consensus       204 nR~q~~~~l~~~d~~tg~~~---~~~~e~~~~Wv~~~~~~~~~~----~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-l  275 (353)
T PF00930_consen  204 NRDQNRLDLVLCDASTGETR---VVLEETSDGWVDVYDPPHFLG----PDGNEFLWISERDGYRHLYLYDLDGGKPRQ-L  275 (353)
T ss_dssp             ETTSTEEEEEEEEECTTTCE---EEEEEESSSSSSSSSEEEE-T----TTSSEEEEEEETTSSEEEEEEETTSSEEEE-S
T ss_pred             ccCCCEEEEEEEECCCCcee---EEEEecCCcceeeeccccccc----CCCCEEEEEEEcCCCcEEEEEcccccceec-c
Confidence            2222   4667777776533   22222222111   1122221    03445555555677  55566666665332 2


Q ss_pred             CCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s  369 (579)
                      ......+.....+...++.   ..++|..++   ...-++...... .....+.++..........|||||+++..++|
T Consensus       276 T~G~~~V~~i~~~d~~~~~---iyf~a~~~~---p~~r~lY~v~~~-~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  276 TSGDWEVTSILGWDEDNNR---IYFTANGDN---PGERHLYRVSLD-SGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-SSS-EEEEEEEECTSSE---EEEEESSGG---TTSBEEEEEETT-ETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             ccCceeecccceEcCCCCE---EEEEecCCC---CCceEEEEEEeC-CCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            2222222111112223331   333444432   223344444322 12333444444433358999999999855554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.28  E-value=6.1e-06  Score=75.15  Aligned_cols=216  Identities=13%  Similarity=0.197  Sum_probs=132.7

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-----ceeeEeecCC------------CCeeEEEEccCC---CEEE
Q 008058          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-----SLLGKFRAST------------KGISCMAVSSDG---KMLA  175 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~~~~~~~~------------~~v~~l~~~p~g---~~l~  175 (579)
                      ....|+++.|...|.|+++|...|.|.+|.-...     +-...|++|.            ..|..+.|..++   .+|+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3467999999999999999998999999974422     1222355553            256777876543   3666


Q ss_pred             EEC-CeEEEEECCCCee-------------------------------------e-----EEe-ecCCCCEEEEEEecCC
Q 008058          176 TAA-GQLKTFNCSDHKK-------------------------------------M-----QKF-SGHPGAVRFMTFSDNG  211 (579)
Q Consensus       176 ~~~-g~i~vwd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~l~~~~~~  211 (579)
                      ++. .+|++|.+.....                                     +     +.. ..|...+.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            776 8999998753200                                     0     011 2466678899999998


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeec----CceeeEeEEecCCcccCC-CcEEEEEEcCCeEEEEECCCcee
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDA-GLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      ..++++  +|-.|.+|++.-.... ...+-.-++    -..++...-|+     |. ...+.-.+..|.|++-|++....
T Consensus       185 et~lSa--DdLrINLWnl~i~D~s-FnIVDiKP~nmeeLteVItSaeFh-----p~~cn~fmYSsSkG~Ikl~DlRq~al  256 (460)
T COG5170         185 ETLLSA--DDLRINLWNLEIIDGS-FNIVDIKPHNMEELTEVITSAEFH-----PEMCNVFMYSSSKGEIKLNDLRQSAL  256 (460)
T ss_pred             heeeec--cceeeeeccccccCCc-eEEEeccCccHHHHHHHHhhcccC-----HhHcceEEEecCCCcEEehhhhhhhh
Confidence            888875  5889999998754321 001111111    12344555555     43 45566677889999999864432


Q ss_pred             ecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeec
Q 008058          287 LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPM  366 (579)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~  366 (579)
                      ....                 +    .+..-..|+.-..                  -+.+-...+..+.|+++|+++ +
T Consensus       257 cdn~-----------------~----klfe~~~D~v~~~------------------ff~eivsSISD~kFs~ngryI-l  296 (460)
T COG5170         257 CDNS-----------------K----KLFELTIDGVDVD------------------FFEEIVSSISDFKFSDNGRYI-L  296 (460)
T ss_pred             ccCc-----------------h----hhhhhccCcccch------------------hHHHHhhhhcceEEcCCCcEE-E
Confidence            2111                 0    1111111110000                  011222357888999999999 8


Q ss_pred             cccceecccceeee
Q 008058          367 SQSLLKSKRGRYVQ  380 (579)
Q Consensus       367 s~s~d~~~~~w~~~  380 (579)
                      +.+ -.++++|++.
T Consensus       297 sRd-yltvkiwDvn  309 (460)
T COG5170         297 SRD-YLTVKIWDVN  309 (460)
T ss_pred             Eec-cceEEEEecc
Confidence            876 6789999984

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=0.00056  Score=61.34  Aligned_cols=187  Identities=14%  Similarity=0.141  Sum_probs=121.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ..+++.|+-.+.+.--|..+|..+++..-+  ..+-+-+.- -|++++.|...|.+++.+..+|.....|..-..-=...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            578999999999999999999998876543  334333222 46789999999999999999998888877544322234


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEEe
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      ...+++..+..|+  ++.+..|.++..++.+.+...+.-.+-+..| ++...++ . ..|.+---........   ....
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~-t~G~vlavt~~~~~~~---~~w~  174 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-I-TAGAVLAVTKNPYSST---EFWA  174 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-e-ccceEEEEccCCCCcc---eehh
Confidence            5678899999998  8999999999988887764444444555666 4443333 3 3455544444333111   1111


Q ss_pred             eecCceeeEe-EEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          243 MEHPAVFMDC-RCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       243 ~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      .......... .+        -+..+..++-||.+.-|+ +.|+++..
T Consensus       175 ~~~~~PiF~splc--------v~~sv~i~~VdG~l~~f~-~sG~qvwr  213 (354)
T KOG4649|consen  175 ATRFGPIFASPLC--------VGSSVIITTVDGVLTSFD-ESGRQVWR  213 (354)
T ss_pred             hhcCCccccCcee--------ccceEEEEEeccEEEEEc-CCCcEEEe
Confidence            1111111111 11        135667777888888888 66666653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=8.8e-05  Score=76.41  Aligned_cols=174  Identities=11%  Similarity=0.147  Sum_probs=123.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+++|+.|+-+|.|++++... .....+ .|...                           +.      .|.++++|+.|
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~-~~~~~~-~~s~~---------------------------~~------~Gey~asCS~D   92 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQG-NPKTNF-DHSSS---------------------------IL------EGEYVASCSDD   92 (846)
T ss_pred             hcceeeeccccceEEEEecCC-cccccc-ccccc---------------------------cc------CCceEEEecCC
Confidence            467899999999999998763 322222 11111                           11      18899999999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEc
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATH-----GSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~-----~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      |+|.|..+-+++...++.  -..++.+++++|+     .+.+++|+.-| +.++.-.  ..+.-.......++|.++.|.
T Consensus        93 Gkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~  169 (846)
T KOG2066|consen   93 GKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR  169 (846)
T ss_pred             CcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec
Confidence            999999998887664442  3468999999997     56799999888 7776522  111111345566799999996


Q ss_pred             cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCE------EEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          169 SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAV------RFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       169 p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v------~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                        |+++|-++ --|++||..+++.+..++.....+      ..+.|.++.+ |+.|  +..+|++..++.+
T Consensus       170 --g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG--W~d~v~i~~I~~~  235 (846)
T KOG2066|consen  170 --GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG--WGDSVKICSIKKR  235 (846)
T ss_pred             --CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe--cCCeEEEEEEecc
Confidence              78999998 679999999988877665333332      3577877664 5554  6778999999843

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=5.6e-06  Score=79.15  Aligned_cols=200  Identities=11%  Similarity=0.068  Sum_probs=138.6

Q ss_pred             CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      ..++..++-||.++.|-...  +-........|.+.|.+++.+-+|..+.|.+. |..++++|+.+...+.-++-..- .
T Consensus        20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l-P   98 (558)
T KOG0882|consen   20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL-P   98 (558)
T ss_pred             hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC-C
Confidence            67899999999999998765  32222333568889999999999998999777 99999999987665533332111 1


Q ss_pred             eEEEEc-cCC---CEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC-
Q 008058          163 SCMAVS-SDG---KMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV-  232 (579)
Q Consensus       163 ~~l~~~-p~g---~~l~~~~---g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~-  232 (579)
                      ..+.|. ..|   ..++++.   +.+.++|-....  ....-.-|.++|..+.+.|.+..+++.. ..|.|.-|..... 
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~  177 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPF  177 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcc
Confidence            122222 222   1444444   899999977543  2333356899999999999998887765 6899999998741 


Q ss_pred             ccccceeEEee---------ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          233 KKQSASCVLAM---------EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       233 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      +.......+.+         ........+..|+     |+|..+.+-+.|..|++++..+++.++.+..
T Consensus       178 qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  178 QFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cCccccccccccccchhhcccccccCccceEEc-----cccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            11111111222         2223344566676     9999999999999999999999998876654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.17  E-value=0.0002  Score=73.61  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=73.4

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCC----C-ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------
Q 008058          126 ATHGSCIYSAGADGMVCEIDPLT----G-SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------  191 (579)
Q Consensus       126 ~~~~~~l~s~~~dg~v~iwd~~~----~-~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~------  191 (579)
                      .++|++...  .++.|.+.|..+    + +.+..+. -......++++|||+++++++   +++.|+|+.+.+.      
T Consensus       285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~  361 (635)
T PRK02888        285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI  361 (635)
T ss_pred             hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence            457887665  367899999987    3 4455554 345678999999999999988   7999999987542      


Q ss_pred             ------eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          192 ------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       192 ------~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                            +.+..--.+| ...+|.++|....+.- -|..|..|++..
T Consensus       362 ~~~~~vvaevevGlGP-LHTaFDg~G~aytslf-~dsqv~kwn~~~  405 (635)
T PRK02888        362 KPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLF-LDSQIVKWNIEA  405 (635)
T ss_pred             CccceEEEeeccCCCc-ceEEECCCCCEEEeEe-ecceeEEEehHH
Confidence                  3333333333 4568999987555554 699999999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.12  E-value=0.0025  Score=66.78  Aligned_cols=151  Identities=20%  Similarity=0.269  Sum_probs=93.2

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      ..++.++.|+.|.-.|..+|+.+..+............+.+            +..            +..+++++.   
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP------------~v~------------~g~Vivg~~~~~  176 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP------------LVV------------KGKVITGISGGE  176 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCc------------EEE------------CCEEEEeecccc
Confidence            45677788999999999999998876531110000000000            000            344666553   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCCC------------------------------CCEE-EEEEccCCCEEEEEeCC--
Q 008058           95 ---GGDVLALAVSAGQLKWRLSDCHP------------------------------GGVS-AISFATHGSCIYSAGAD--  138 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h~------------------------------~~V~-~l~~~~~~~~l~s~~~d--  138 (579)
                         +|.|..+|..+|+.+++......                              +.++ .+.+.|+..+++.+..+  
T Consensus       177 ~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~  256 (527)
T TIGR03075       177 FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPS  256 (527)
T ss_pred             cCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCC
Confidence               67899999999998877543211                              1122 34666666666665422  


Q ss_pred             ---C-----------cEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEEECCCCe
Q 008058          139 ---G-----------MVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       139 ---g-----------~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--g~i~vwd~~~~~  190 (579)
                         +           .|...|+++|+....|+....         ...-+.+..+|+   .++.+.  |.+++.|-++|+
T Consensus       257 p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       257 PWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             CCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence               2           577789999998888775322         112223334666   566666  899999999998


Q ss_pred             ee
Q 008058          191 KM  192 (579)
Q Consensus       191 ~~  192 (579)
                      .+
T Consensus       337 ~i  338 (527)
T TIGR03075       337 LL  338 (527)
T ss_pred             ee
Confidence            76

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.11  E-value=0.0021  Score=67.01  Aligned_cols=195  Identities=13%  Similarity=0.199  Sum_probs=115.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC-cEEEEEECC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS-SLLVLGTGG   95 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~l~~~~~~   95 (579)
                      +..+..++.++.|.-.|..+|+.+..++........  . +.    ....  ....+            + ..+++++.+
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~--~-~~----~~~~--g~~~~------------~~~~V~v~~~~  119 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRG--C-CD----VVNR--GVAYW------------DPRKVFFGTFD  119 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcccc--c-cc----cccC--CcEEc------------cCCeEEEecCC
Confidence            445667777899999999999988777533210000  0 00    0000  00000            3 678899999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCC----CEE-EEEEccCCCEEEEEe---------CCCcEEEEeCCCCceeeEeecCCCC
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPG----GVS-AISFATHGSCIYSAG---------ADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~----~V~-~l~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      |.|..+|..+|+.+++.......    .+. +..+.  +..++.++         .+|.++.+|..+|+.+..++.....
T Consensus       120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~  197 (488)
T cd00216         120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD  197 (488)
T ss_pred             CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence            99999999999998887432110    011 11221  24455553         3688999999999988776542110


Q ss_pred             --------------------e-eEEEEccCCCEEEEEC--C------------------eEEEEECCCCeeeEEeec--C
Q 008058          162 --------------------I-SCMAVSSDGKMLATAA--G------------------QLKTFNCSDHKKMQKFSG--H  198 (579)
Q Consensus       162 --------------------v-~~l~~~p~g~~l~~~~--g------------------~i~vwd~~~~~~~~~~~~--h  198 (579)
                                          + .+.++++.+..++.+.  +                  .|.-+|..+|+.+-++..  |
T Consensus       198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~  277 (488)
T cd00216         198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH  277 (488)
T ss_pred             cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence                                1 1244555556666664  3                  699999999998877642  2


Q ss_pred             CC----CEEEEEEe----cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          199 PG----AVRFMTFS----DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       199 ~~----~v~~l~~~----~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ..    ......+.    -++.   .++.++ .+|.+...|..+++..
T Consensus       278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-~~G~l~ald~~tG~~~  324 (488)
T cd00216         278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-KNGFFYVLDRTTGKLI  324 (488)
T ss_pred             CCcccccCCCCeEEeccccCCCeeEEEEEEC-CCceEEEEECCCCcEe
Confidence            11    00111111    1232   455554 7999999999999754

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.0013  Score=67.75  Aligned_cols=246  Identities=10%  Similarity=0.032  Sum_probs=142.6

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEe-eecccccccccCCcEEEE-
Q 008058           16 ALDYFAICSG-DARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKW-LSVDRKKKRKLGSSLLVL-   91 (579)
Q Consensus        16 dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~l~~-   91 (579)
                      ||+||..-.. ..+|-..+++..++-..+.-+.. .+....|...   .+.......-.+ .|.+++      +..+.. 
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~---p~t~yv~~~~e~~~PlpnD------Gk~l~~~  210 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKI---PRTGYVFCNGEFRIPLPND------GKDLDDP  210 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCcccc---CCccEEEeCcccccccCCC------CCEeecc
Confidence            7888887764 56777777777666554442221 1111111100   000110100011 111222      433332 


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      .-..+.+.+.|..+.+..+++.-+  +....+.++|+|+++++++.+    .++...+..+...+..|...  .+  .++
T Consensus       211 ~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~  284 (635)
T PRK02888        211 KKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEA  284 (635)
T ss_pred             cceeEEEEEEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHh
Confidence            233355888899988887777543  355778899999998887632    23333333222222222111  01  134


Q ss_pred             ccCCCEEEEECCeEEEEECCC-----CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc------c
Q 008058          168 SSDGKMLATAAGQLKTFNCSD-----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ------S  236 (579)
Q Consensus       168 ~p~g~~l~~~~g~i~vwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~------~  236 (579)
                      .++|++...+++.|.+.|.++     .+.+..+. -......+.++|||+++++++.-+.++.|.|+.+.+..      .
T Consensus       285 vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~  363 (635)
T PRK02888        285 VKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP  363 (635)
T ss_pred             hhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence            568888887778999999998     34555555 34556899999999999998877999999999886521      0


Q ss_pred             cee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          237 ASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       237 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      ..+ +....-.... .-..|+     ++|....+.-.|..|-.||++.
T Consensus       364 ~~~vvaevevGlGP-LHTaFD-----g~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        364 RDAVVAEPELGLGP-LHTAFD-----GRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cceEEEeeccCCCc-ceEEEC-----CCCCEEEeEeecceeEEEehHH
Confidence            011 1111111122 234455     7888777788899999999876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.09  E-value=0.00063  Score=73.58  Aligned_cols=193  Identities=13%  Similarity=0.164  Sum_probs=126.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +++.|-.+++-++.+..+|.|.+-|..+.....                   .|..+..+.++.|.+.         ...
T Consensus        72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------vg~vd~GI~aaswS~D---------ee~  123 (1265)
T KOG1920|consen   72 VSVQFLADTNSICVITALGDIILVDPETLELEI-------------------VGNVDNGISAASWSPD---------EEL  123 (1265)
T ss_pred             EEEEEecccceEEEEecCCcEEEEcccccceee-------------------eeeccCceEEEeecCC---------CcE
Confidence            666888888888888999999998877665321                   2445666778888776         677


Q ss_pred             EEEEECCCeEEEEEc----cCCeEE-------------------EEecCC---------------------CCCCEEEEE
Q 008058           89 LVLGTGGGDVLALAV----SAGQLK-------------------WRLSDC---------------------HPGGVSAIS  124 (579)
Q Consensus        89 l~~~~~~g~i~iwd~----~~~~~~-------------------~~~~~~---------------------h~~~V~~l~  124 (579)
                      ++..+..+++.+-.-    -..+.+                   .++ .|                     ..+.=+++.
T Consensus       124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is  202 (1265)
T KOG1920|consen  124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGSEGRQAARQKIEKEKALEQIEQDDHKTSIS  202 (1265)
T ss_pred             EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceee-ecchhhhcccccccccccccchhhccCCceEE
Confidence            888888888666432    110000                   011 00                     111224589


Q ss_pred             EccCCCEEEEEe----CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe----
Q 008058          125 FATHGSCIYSAG----AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK----  190 (579)
Q Consensus       125 ~~~~~~~l~s~~----~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~----  190 (579)
                      |..||+++++..    .+ ..|++||-. |..-.+-....+.=.+++|-|.|..+++-.     +.|.+|.- +|-    
T Consensus       203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~  280 (1265)
T KOG1920|consen  203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGE  280 (1265)
T ss_pred             EccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccc
Confidence            999999988732    33 789999965 544333222233446899999999999864     56888863 332    


Q ss_pred             eeEEeecCCCCEEEEEEecCCCEEEE---EecCCCeEEEEEcCCCc
Q 008058          191 KMQKFSGHPGAVRFMTFSDNGKYVLS---SAVGERYIALWRTDGVK  233 (579)
Q Consensus       191 ~~~~~~~h~~~v~~l~~~~~~~~l~s---~s~~d~~i~vwd~~~~~  233 (579)
                      ....++....+|..++|+.++..|+.   .. ....|++|-+.+..
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~-e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNL-ENSLVQLWTTGNYH  325 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeeccc-ccceEEEEEecCeE
Confidence            22223334455899999999998877   33 34459999887653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=5.3e-05  Score=72.73  Aligned_cols=199  Identities=17%  Similarity=0.168  Sum_probs=136.5

Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++++.|-+|..++|++. |..++++|+.+-....-++..        |           .-..+.|.....+.     -.
T Consensus        57 ~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~--------~-----------lPg~a~wv~skGd~-----~s  112 (558)
T KOG0882|consen   57 LSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV--------D-----------LPGFAEWVTSKGDK-----IS  112 (558)
T ss_pred             HhhhccccceeEeeccCcccceeEEEeeccchhhhcccc--------c-----------CCCceEEecCCCCe-----ee
Confidence            44577889999999877 999999999876655433311        1           11234555443221     22


Q ss_pred             EEEEEE-CCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------CceeeE-----
Q 008058           88 LLVLGT-GGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------GSLLGK-----  154 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------~~~~~~-----  154 (579)
                      .++++. .+|.|.++|-..+.+ ...+.+-|..+|..+.+++.+..+++....|.|.-|....      .+....     
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            344444 568899999876653 3334456999999999999999999999999999999762      111111     


Q ss_pred             ----eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--------------------------------
Q 008058          155 ----FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--------------------------------  196 (579)
Q Consensus       155 ----~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--------------------------------  196 (579)
                          +.-.+....++.|+|+|..+.+-+  ..|++++.++|+.++.+.                                
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverele  272 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELE  272 (558)
T ss_pred             hhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHh
Confidence                112345678999999999999877  799999999887654331                                


Q ss_pred             cCCC-CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          197 GHPG-AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       197 ~h~~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|.. .-+.+.|...|++|+.++ -= -|++.++.++.
T Consensus       273 k~~~~~~~~~~fdes~~flly~t-~~-gikvin~~tn~  308 (558)
T KOG0882|consen  273 KHGSTVGTNAVFDESGNFLLYGT-IL-GIKVINLDTNT  308 (558)
T ss_pred             hhcCcccceeEEcCCCCEEEeec-ce-eEEEEEeecCe
Confidence            1211 234567888899998876 23 38888888765

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.08  E-value=0.00029  Score=75.20  Aligned_cols=139  Identities=15%  Similarity=0.129  Sum_probs=95.5

Q ss_pred             CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008058           25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS  104 (579)
Q Consensus        25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~  104 (579)
                      ....|+-.|+..|+.+.+++.+.... ...|.++-.-..+                    .+..-++|-.+..+..||++
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aql--------------------t~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQL--------------------TNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcc-eeEeccccccccc--------------------CCCceEEEECCCceEEeccC
Confidence            45778888999999999998665431 1112221000000                    13456899999999999998


Q ss_pred             CCe--EEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC-
Q 008058          105 AGQ--LKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA-  178 (579)
Q Consensus       105 ~~~--~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~-  178 (579)
                      -..  ++....  -......+|++-+.+| +|+.|+.+|.||+||- .|+.-+ .+.+-..+|.+|+.+.||+++++.+ 
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            632  332111  1233457788877776 7999999999999994 444333 3666678999999999999998887 


Q ss_pred             CeEEEEEC
Q 008058          179 GQLKTFNC  186 (579)
Q Consensus       179 g~i~vwd~  186 (579)
                      ..+.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            77888775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.05  E-value=0.00022  Score=73.78  Aligned_cols=106  Identities=18%  Similarity=0.275  Sum_probs=81.3

Q ss_pred             EEccCCCEEEEEeC----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           12 SFSPALDYFAICSG----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fs~dg~~las~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +|+|...+||.++.    .|.|.||- ++|++....+                   .....++++|+|.         .-
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-------------------~P~hatSLCWHpe---------~~   72 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-------------------YPVHATSLCWHPE---------EF   72 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-------------------cceehhhhccChH---------HH
Confidence            89999999998874    57787773 4555332111                   0123456899886         45


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      .|+.|-.-|.+.+|...+.+.- +....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus        73 vLa~gwe~g~~~v~~~~~~e~h-tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   73 VLAQGWEMGVSDVQKTNTTETH-TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HHhhccccceeEEEecCCceee-eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            6788888999999998877654 4446799999999999999999999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0088  Score=60.21  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=130.0

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      ..+....++.|.+.|..+.........+.  ....++++|+++.++.+..   ++++.+.|..+++...+......+ ..
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~  164 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG  164 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence            44445556889999988887766654444  6788999999988887765   689999999989888875543334 89


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeE-E----eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCcc
Q 008058          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQ-K----FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~-~----~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~  234 (579)
                      ++++|+|+.++.+.   +.|.+.|..+..... .    ...+ .....+.+.|+|.++...-..+  +.+...|..++..
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence            99999999777765   899999977665543 1    2212 2335789999999776665333  5788888877653


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeecc
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRN  289 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  289 (579)
                      ..  ..... ... ........     |+|.++.+... .+.+.+-|..+......
T Consensus       244 ~~--~~~~~-~~~-~~~~v~~~-----p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         244 TA--TDLPV-GSG-APRGVAVD-----PAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             EE--ecccc-ccC-CCCceeEC-----CCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            21  00011 111 22334444     89999988854 58899998887766544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.01  E-value=1.2e-06  Score=87.38  Aligned_cols=191  Identities=10%  Similarity=0.126  Sum_probs=125.8

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           14 SPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        14 s~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ..|...++.|..+|.|.+-..+...-. +++.                ++ ....+++++|.+.+        .+.|++|
T Consensus        67 ~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t----------------p~-~ar~Ct~lAwneLD--------tn~LAag  121 (783)
T KOG1008|consen   67 GNDRCILAVGSATGNISLLSVRHPHDSSAEVT----------------PG-YARPCTSLAWNELD--------TNHLAAG  121 (783)
T ss_pred             CCchhhhhhccccCceEEeecCCcccccceec----------------cc-cccccccccccccc--------HHHHHhh
Confidence            334458889999999998776533221 1111                12 25678999998875        5566666


Q ss_pred             EC----CCeEEEEEccCC--e--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCee
Q 008058           93 TG----GGDVLALAVSAG--Q--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGIS  163 (579)
Q Consensus        93 ~~----~g~i~iwd~~~~--~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~  163 (579)
                      -.    +..+.|||+.++  .  ....+..+......+++|-.+.+.+.+|.....+.++|++.. .....+  ....+.
T Consensus       122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vq  199 (783)
T KOG1008|consen  122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQ  199 (783)
T ss_pred             hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcc
Confidence            43    345999999876  1  112222224456678899988889999999999999998732 222222  233566


Q ss_pred             EEEEcc-CCCEEEEEC-CeEEEEE-CCCC-eeeEEeecCC----CCEEEEEEecCCC-EEEEEecCCCeEEEEEcCC
Q 008058          164 CMAVSS-DGKMLATAA-GQLKTFN-CSDH-KKMQKFSGHP----GAVRFMTFSDNGK-YVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       164 ~l~~~p-~g~~l~~~~-g~i~vwd-~~~~-~~~~~~~~h~----~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~  231 (579)
                      .+.++| .+.++++-. |.|.+|| .+.- .++..+...+    ..+..++|+|... .+++...+.++|+.+++..
T Consensus       200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            788888 788888887 9999999 4332 2233332222    2488999998644 4555555678999999864

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.96  E-value=7.1e-05  Score=74.95  Aligned_cols=73  Identities=18%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC
Q 008058          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH  189 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~  189 (579)
                      .....|.+++++|+...++.|+.||.|.+||...+...  +....-.++.++|+|+|.++++|+  |.+.+||+.-.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            46678999999999999999999999999998766332  222345678999999999999999  99999998644

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.94  E-value=0.012  Score=57.32  Aligned_cols=224  Identities=11%  Similarity=0.019  Sum_probs=113.4

Q ss_pred             ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe--EEEEEccCCeEEE
Q 008058           33 DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD--VLALAVSAGQLKW  110 (579)
Q Consensus        33 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~--i~iwd~~~~~~~~  110 (579)
                      |..||..+..++.........-|..+             +|...        +..+|+.+..+|.  +.+.|+.+++..+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~-------------~ft~d--------G~kllF~s~~dg~~nly~lDL~t~~i~Q   74 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQN-------------CFTDD--------GRKLLFASDFDGNRNLYLLDLATGEITQ   74 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS---------------B-TT--------S-EEEEEE-TTSS-EEEEEETTT-EEEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCC-------------CcCCC--------CCEEEEEeccCCCcceEEEEcccCEEEE
Confidence            67788877777654443332333222             23221        1345555555655  8888899998874


Q ss_pred             EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE--ccCCCEEEEEC----------
Q 008058          111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV--SSDGKMLATAA----------  178 (579)
Q Consensus       111 ~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~--~p~g~~l~~~~----------  178 (579)
                      -. .+-.....+..++|+++.++.......|+..|+.+.+....+......+-...|  +.|+..++..-          
T Consensus        75 LT-dg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~  153 (386)
T PF14583_consen   75 LT-DGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT  153 (386)
T ss_dssp             ----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred             Cc-cCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence            33 322222335677888888877766778999999998876666666665554555  34666655431          


Q ss_pred             --------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---CCC-eEEEEEcCCCccccceeE
Q 008058          179 --------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---GER-YIALWRTDGVKKQSASCV  240 (579)
Q Consensus       179 --------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---~d~-~i~vwd~~~~~~~~~~~~  240 (579)
                                    ..|.-.|+.+|+....+. -...+..+.|+|....++.-|.   +|. .-+||-++...... ..+
T Consensus       154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v  231 (386)
T PF14583_consen  154 KWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKV  231 (386)
T ss_dssp             SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred             ccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eee
Confidence                          146667888887654444 4567889999998776666552   222 23677766543221 122


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEc-----CCeEEEEECCCcee
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEE  286 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~  286 (579)
                      ... .....+.--+|.     |||..|.--+.     +..|.-+|+.+++.
T Consensus       232 ~~~-~~~e~~gHEfw~-----~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  232 HRR-MEGESVGHEFWV-----PDGSTIWYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             S----TTEEEEEEEE------TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred             ecC-CCCccccccccc-----CCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence            222 235555666776     89988766443     33566778887754

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.94  E-value=0.01  Score=56.94  Aligned_cols=232  Identities=11%  Similarity=0.078  Sum_probs=125.3

Q ss_pred             ccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           14 SPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        14 s~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      ...++.|+.|..+| +.+++... .......+. .                   .++.+...+.         -+ +++.
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~-~-------------------~I~ql~vl~~---------~~-~llv   52 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL-S-------------------SITQLSVLPE---------LN-LLLV   52 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeec-c-------------------eEEEEEEecc---------cC-EEEE
Confidence            34678999999998 89998832 222222210 0                   0222222221         22 2333


Q ss_pred             ECCCeEEEEEccCCeEEEEe-------------cCCCCCCEEEEE--EccCCCEEEEEeCCCcEEEEeCCCC-----cee
Q 008058           93 TGGGDVLALAVSAGQLKWRL-------------SDCHPGGVSAIS--FATHGSCIYSAGADGMVCEIDPLTG-----SLL  152 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~-------------~~~h~~~V~~l~--~~~~~~~l~s~~~dg~v~iwd~~~~-----~~~  152 (579)
                      -.|+.+.++++..-......             .......+..++  -...+...+......+|.+|.....     +..
T Consensus        53 Lsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~  132 (275)
T PF00780_consen   53 LSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL  132 (275)
T ss_pred             EcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence            34599999998754332210             112234455555  1223444444445668888876543     345


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEec
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      +.+.- ...+.+++|.  ++.++.|. +...+.|+.++.....+...            ..++..+.. +++.+|++   
T Consensus       133 ke~~l-p~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~---  205 (275)
T PF00780_consen  133 KEISL-PDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC---  205 (275)
T ss_pred             EEEEc-CCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE---
Confidence            55553 4678999998  55777775 88999999977554333111            123333333 44556654   


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      .|..-...|.... .. .......  ...........        .||++.+. +.|.||++.+++.++.+......
T Consensus       206 ~~~~g~fv~~~G~-~~-r~~~i~W--~~~p~~~~~~~--------pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~  269 (275)
T PF00780_consen  206 YDNIGVFVNKNGE-PS-RKSTIQW--SSAPQSVAYSS--------PYLIAFSS-NSIEVRSLETGELVQTIPLPNIR  269 (275)
T ss_pred             ecceEEEEcCCCC-cC-cccEEEc--CCchhEEEEEC--------CEEEEECC-CEEEEEECcCCcEEEEEECCCEE
Confidence            2444444454433 22 1122222  23333333332        47776666 55999999999988877655444

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.92  E-value=0.0021  Score=69.65  Aligned_cols=189  Identities=13%  Similarity=0.215  Sum_probs=121.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC----CC-------------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP----LT-------------  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~----~~-------------  148 (579)
                      ...+++++..|.|.+-|+.+....  +...-..+|.+++|+||++.++..+.++++.+-+-    -.             
T Consensus        80 ~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk  157 (1265)
T KOG1920|consen   80 TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSK  157 (1265)
T ss_pred             cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccc
Confidence            667999999999999999887653  22334578999999999999998888888776432    11             


Q ss_pred             ------CceeeEeecCC---------------------CCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE
Q 008058          149 ------GSLLGKFRAST---------------------KGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       149 ------~~~~~~~~~~~---------------------~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~  194 (579)
                            |+....|++..                     +.=++|+|--||+++++..       ..|++||-+ |..-.+
T Consensus       158 ~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~  236 (1265)
T KOG1920|consen  158 FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST  236 (1265)
T ss_pred             cceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence                  11111222111                     1124589999999999843       589999976 433222


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE--
Q 008058          195 FSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI--  270 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--  270 (579)
                      -....+.-.+++|-|.|..+++...  .|+.|.++.-+.-....  .....+.....+.-++|+     .++..|++.  
T Consensus       237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ve~L~Wn-----s~sdiLAv~~~  309 (1265)
T KOG1920|consen  237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKEVEELAWN-----SNSDILAVVTS  309 (1265)
T ss_pred             cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccchheeeec-----CCCCceeeeec
Confidence            2223344467899999998887542  35578888766543221  222222333335666776     677888773  


Q ss_pred             -EcCCeEEEEECCCc
Q 008058          271 -SETGVCYIWYGQNI  284 (579)
Q Consensus       271 -~~dg~i~iwd~~~~  284 (579)
                       .....|++|-..+.
T Consensus       310 ~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  310 NLENSLVQLWTTGNY  324 (1265)
T ss_pred             ccccceEEEEEecCe
Confidence             33445999976543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.90  E-value=0.034  Score=57.04  Aligned_cols=240  Identities=12%  Similarity=0.111  Sum_probs=126.1

Q ss_pred             EEEEccCCCEEEEE-eCCC----cEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccc
Q 008058           10 LTSFSPALDYFAIC-SGDA----RIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus        10 ~~~fs~dg~~las~-s~dg----~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++||||+++|.+ +..|    +|+|+|+.+|+.+... .                    ......+.|.+.+      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--------------------~~~~~~~~W~~d~------  181 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--------------------NPKFSSVSWSDDG------  181 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--------------------EEESEEEEECTTS------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--------------------ccccceEEEeCCC------
Confidence            34899999999965 3333    5999999999765421 1                    1122237776653      


Q ss_pred             cCCcEEEEEECC----------CeEEEEEccCCeEE-EEecCCCC-CC-EEEEEEccCCCEEEEEe-CC---CcEEEEeC
Q 008058           84 LGSSLLVLGTGG----------GDVLALAVSAGQLK-WRLSDCHP-GG-VSAISFATHGSCIYSAG-AD---GMVCEIDP  146 (579)
Q Consensus        84 ~~~~~l~~~~~~----------g~i~iwd~~~~~~~-~~~~~~h~-~~-V~~l~~~~~~~~l~s~~-~d---g~v~iwd~  146 (579)
                        ..++++....          ..|+.|.+.++... ..++.+.. .. ...+..++|+++++... ..   ..+++.|+
T Consensus       182 --~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~  259 (414)
T PF02897_consen  182 --KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL  259 (414)
T ss_dssp             --SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred             --CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence              2333443332          22788888765422 11222222 22 67889999999976543 22   34788888


Q ss_pred             CCC----ceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEE
Q 008058          147 LTG----SLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       147 ~~~----~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l  214 (579)
                      ..+    .....+......+....-+..+.+++...     +.|...++.....   ...+..|...+.--.+...+.+|
T Consensus       260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred             cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence            764    23333433444444333333555555543     5787888887652   33555566644444444456666


Q ss_pred             EEEecCCC--eEEEEEcC-CCccccceeEEeeecCceeeEeEEecCCcccCCCcE-EEEEEc---CCeEEEEECCCceee
Q 008058          215 LSSAVGER--YIALWRTD-GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISE---TGVCYIWYGQNIEEL  287 (579)
Q Consensus       215 ~s~s~~d~--~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~---dg~i~iwd~~~~~~~  287 (579)
                      +.....++  .|+++++. +....    ...+..... +......     +++.. .++.+.   -++++.||+.+++..
T Consensus       340 vl~~~~~~~~~l~v~~~~~~~~~~----~~~~p~~g~-v~~~~~~-----~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLDDGKESR----EIPLPEAGS-VSGVSGD-----FDSDELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEETTEEEEEEEETT-TEEEE----EEESSSSSE-EEEEES------TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             EEEEEECCccEEEEEECCCCcEEe----eecCCcceE-EeccCCC-----CCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            66654455  58888888 33211    122222221 2222222     33333 233322   568888998888653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.89  E-value=0.00025  Score=71.16  Aligned_cols=82  Identities=21%  Similarity=0.349  Sum_probs=63.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  +|++++|+.+.|+.|+.||.|.+||...+..... +                   .....+.++|+|.      
T Consensus       259 ~s~v--~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-------------------a~~~P~~iaWHp~------  310 (545)
T PF11768_consen  259 PSQV--ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-------------------AEFIPTLIAWHPD------  310 (545)
T ss_pred             CCcc--eEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-------------------ecccceEEEEcCC------
Confidence            3567  8899999999999999999999999876643321 1                   1234567889886      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC  115 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~  115 (579)
                         +..+++|+..|.+.+||+.-+....++..+
T Consensus       311 ---gai~~V~s~qGelQ~FD~ALspi~~qLlsE  340 (545)
T PF11768_consen  311 ---GAIFVVGSEQGELQCFDMALSPIKMQLLSE  340 (545)
T ss_pred             ---CcEEEEEcCCceEEEEEeecCccceeeccc
Confidence               889999999999999999877665555433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.89  E-value=0.013  Score=56.13  Aligned_cols=193  Identities=13%  Similarity=0.184  Sum_probs=122.2

Q ss_pred             EEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ++|.||++++....  ...|.|-|+..++.+.++..+.                      |..-.|..        +..+
T Consensus       101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----------------------C~~iyP~~--------~~~F  150 (342)
T PF06433_consen  101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----------------------CWLIYPSG--------NRGF  150 (342)
T ss_dssp             EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----------------------EEEEEEEE--------TTEE
T ss_pred             EEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----------------------EEEEEecC--------CCce
Confidence            88999998887653  5679999999999888775322                      22222322        4458


Q ss_pred             EEEECCCeEEEEEcc-CCeEEEE---ecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEeec-----
Q 008058           90 VLGTGGGDVLALAVS-AGQLKWR---LSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFRA-----  157 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~-~~~~~~~---~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~-----  157 (579)
                      .+-|.||.+.-..+. .|+...+   ++.....++. .-.+...+..++..+..|.|+--|+.....  ...+..     
T Consensus       151 ~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e  230 (342)
T PF06433_consen  151 SMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAE  230 (342)
T ss_dssp             EEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHH
T ss_pred             EEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccc
Confidence            899999999888887 4444311   2222222322 334455555666678899999988865432  112211     


Q ss_pred             -----CCCCeeEEEEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEec
Q 008058          158 -----STKGISCMAVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAV  219 (579)
Q Consensus       158 -----~~~~v~~l~~~p~g~~l~~~~------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~  219 (579)
                           ..+.-.-+++++..+.|++--            ..|.+||+.+++.+..+.. ..++.+|..+.+.+ .|++.+.
T Consensus       231 ~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~  309 (342)
T PF06433_consen  231 KADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSA  309 (342)
T ss_dssp             HHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEET
T ss_pred             cccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcC
Confidence                 012345578887665555421            2799999999999998873 34678999998766 5655544


Q ss_pred             CCCeEEEEEcCCCccc
Q 008058          220 GERYIALWRTDGVKKQ  235 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~  235 (579)
                      .++.+.+||..+++..
T Consensus       310 ~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  310 GDGTLDVYDAATGKLV  325 (342)
T ss_dssp             TTTEEEEEETTT--EE
T ss_pred             CCCeEEEEeCcCCcEE
Confidence            6899999999998754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.0013  Score=66.48  Aligned_cols=157  Identities=12%  Similarity=0.055  Sum_probs=101.1

Q ss_pred             CCCCEEEEEEccCCCEEEEEe---CC-CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---C--eEEEEEC
Q 008058          116 HPGGVSAISFATHGSCIYSAG---AD-GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---G--QLKTFNC  186 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~---~d-g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g--~i~vwd~  186 (579)
                      -...+..-+|+|+++.++..+   .. ..++++|+.+++...... ..+.-...+|+|||+.++.+.   |  .|+++|+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            345677788999998755442   22 469999999886555443 223334568999999998876   3  7889999


Q ss_pred             CCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058          187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       187 ~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+++. ..+....+.-..-.|+|||++++..++..|.-.||  +.+.....    ..+.......  .-.++     |||
T Consensus       270 ~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~----riT~~~~~~~--~p~~S-----pdG  337 (425)
T COG0823         270 DGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT----RLTFSGGGNS--NPVWS-----PDG  337 (425)
T ss_pred             CCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee----EeeccCCCCc--CccCC-----CCC
Confidence            88763 33554444444678999999999988767765555  55544322    1222222221  34444     999


Q ss_pred             cEEEEEEc-CCe--EEEEECCCce
Q 008058          265 LYVLAISE-TGV--CYIWYGQNIE  285 (579)
Q Consensus       265 ~~l~s~~~-dg~--i~iwd~~~~~  285 (579)
                      ++|+..+. +|.  |.++|..++.
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            99988875 354  5566665554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.88  E-value=0.00049  Score=69.49  Aligned_cols=178  Identities=19%  Similarity=0.222  Sum_probs=109.4

Q ss_pred             eEEEEccCCCEEEEEeC---C-CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            9 ILTSFSPALDYFAICSG---D-ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~---d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +.-+|+|++..++..+.   . ..+.++++.+++...... ..+......|+++                          
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspD--------------------------  248 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPD--------------------------  248 (425)
T ss_pred             eccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCC--------------------------
Confidence            44589999987776542   2 358889998887654443 2222223344444                          


Q ss_pred             CCc-EEEEEECCCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeeEeecC
Q 008058           85 GSS-LLVLGTGGGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DG--MVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        85 ~~~-~l~~~~~~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~  158 (579)
                       +. ++++...+|.  |+++|+.+++.. ++. .-.+.-+.-.|+|||++++..+. .|  .|.++|+..+.. ..+...
T Consensus       249 -G~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         249 -GSKLAFSSSRDGSPDIYLMDLDGKNLP-RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             -CCEEEEEECCCCCccEEEEcCCCCcce-ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence             44 4445555665  888888887744 332 22233346789999999776653 44  466677665543 333333


Q ss_pred             CCCeeEEEEccCCCEEEEEC---Ce--EEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058          159 TKGISCMAVSSDGKMLATAA---GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      .+.-..-.|+|||++++..+   |.  |.+.|+.++..++.+. +......-.|.|+++.++..+
T Consensus       325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence            33333778999999999876   44  7777776665444443 333344567888888877765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.002  Score=67.24  Aligned_cols=193  Identities=16%  Similarity=0.212  Sum_probs=121.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEeCCC-----cEEEEeCCCC------cee-
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAGADG-----MVCEIDPLTG------SLL-  152 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~------~~~-  152 (579)
                      +..+++|+.+|.|.+++-.-.. +..+ ..+... |..+....+..+|++.+.|+     .+++||+..-      .++ 
T Consensus        35 ~~~vvigt~~G~V~~Ln~s~~~-~~~f-qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~  112 (933)
T KOG2114|consen   35 TGSVVIGTADGRVVILNSSFQL-IRGF-QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY  112 (933)
T ss_pred             CceEEEeeccccEEEeccccee-eehh-eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence            6789999999999988754322 1122 344444 45454444446788877665     4899998632      233 


Q ss_pred             --eEee--c--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          153 --GKFR--A--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       153 --~~~~--~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                        +.+.  .  ...++.+++++.+-+.+|+|-  |.|..+.-+-    +....-......+|+.+.+..+++.++... .
T Consensus       113 ~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-T  191 (933)
T KOG2114|consen  113 EHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-T  191 (933)
T ss_pred             eeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-e
Confidence              1111  1  234789999999988888886  8888874321    111222233467999999998888622222 2


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      -..|.+|.+.... .   ....+.+++..+.|..++     +....+++++ +..+.+|+.+.........
T Consensus       192 t~~V~~y~l~gr~-p---~~~~ld~~G~~lnCss~~-----~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  192 TEQVMLYSLSGRT-P---SLKVLDNNGISLNCSSFS-----DGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cceeEEEEecCCC-c---ceeeeccCCccceeeecC-----CCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            4579999998543 2   234577888888998887     3333243333 3579999887555544443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.86  E-value=0.011  Score=58.29  Aligned_cols=180  Identities=18%  Similarity=0.171  Sum_probs=104.4

Q ss_pred             CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---------C-C
Q 008058           27 ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---------G-G   96 (579)
Q Consensus        27 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---------~-g   96 (579)
                      ..|++.|..+.+.+..+.-..                 ...+++++-........  ....++++|+.         . |
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~-----------------~E~~~s~~~~~l~~~~~--~~~~~ivVGT~~~~~~~~~~~~G   62 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP-----------------NEHVTSLCSVKLKGDST--GKKEYIVVGTAFNYGEDPEPSSG   62 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET-----------------TEEEEEEEEEEETTS-----SSEEEEEEEEE--TTSSS-S-E
T ss_pred             cEEEEEeCCCCeEEEEEECCC-----------------CceEEEEEEEEEcCccc--cccCEEEEEecccccccccccCc
Confidence            357888888887776654211                 12222333222211000  01577888875         2 8


Q ss_pred             eEEEEEccCC-----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeec-CCCCeeEEEEcc
Q 008058           97 DVLALAVSAG-----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRA-STKGISCMAVSS  169 (579)
Q Consensus        97 ~i~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~-~~~~v~~l~~~p  169 (579)
                      .|.++++...     +..........++|++++-- +| +++.+ ..+.|++|++...+ ....-.. ....+.++... 
T Consensus        63 ri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-  138 (321)
T PF03178_consen   63 RILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-  138 (321)
T ss_dssp             EEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred             EEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence            8999999984     33322223457889999876 44 45444 35789999998777 4433221 22255555554 


Q ss_pred             CCCEEEEEC--CeEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          170 DGKMLATAA--GQLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                       ++++++|+  ..+.++..+. .+.+..+.  .....++++.|-++++.++.+ +.+|.+.++....
T Consensus       139 -~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~-D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 -KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG-DKDGNLFVLRYNP  203 (321)
T ss_dssp             -TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE-ETTSEEEEEEE-S
T ss_pred             -ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE-cCCCeEEEEEECC
Confidence             66888888  6777664432 33233332  234568888998776766665 4799999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.85  E-value=0.00016  Score=73.56  Aligned_cols=154  Identities=16%  Similarity=0.237  Sum_probs=99.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -.-+++..++|++.|+.-|.+++|+...+.... ++..               +  ....++..-.+.+        ..+
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~---------------~--~~~~~~~~~vs~~--------e~l   90 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE---------------G--ATGITCVRSVSSV--------EYL   90 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhhc-cccc---------------C--ccceEEEEEecch--------hHh
Confidence            334678889999999999999999987665332 2110               1  1112222222222        567


Q ss_pred             EEEEECCCeEEEEEccCCeE-----EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC----ceeeEeecCC
Q 008058           89 LVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG----SLLGKFRAST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~  159 (579)
                      +++|+..|.|.++-+..+..     +......|...|++++|++++..+++|...|+|..-.+.+.    ...+.+-...
T Consensus        91 vAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d  170 (726)
T KOG3621|consen   91 VAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED  170 (726)
T ss_pred             hhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence            89999999999998876432     22223457889999999999999999999999998887662    1122233344


Q ss_pred             CCeeEEEEccCCCEEEEECCeEEEEECCCC
Q 008058          160 KGISCMAVSSDGKMLATAAGQLKTFNCSDH  189 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~  189 (579)
                      ..|-.+... ++.+|++..-.-.+++++.+
T Consensus       171 s~IVQlD~~-q~~LLVStl~r~~Lc~tE~e  199 (726)
T KOG3621|consen  171 SEIVQLDYL-QSYLLVSTLTRCILCQTEAE  199 (726)
T ss_pred             cceEEeecc-cceehHhhhhhhheeecchh
Confidence            567666665 34444444455556665543

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.80  E-value=5.7e-06  Score=82.69  Aligned_cols=197  Identities=12%  Similarity=0.149  Sum_probs=125.8

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEcc-CCCEEEEEe----CCCc
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFAT-HGSCIYSAG----ADGM  140 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~-~~~~l~s~~----~dg~  140 (579)
                      .+.|++|+-...       ...+++|..+|.|-+-......-. +.+..+|..++++++|++ |.++|+.|-    .|..
T Consensus        58 y~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   58 YVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            455677765431       367899999999999888754332 455678889999999998 556666662    4567


Q ss_pred             EEEEeCCCC--ceeeE--eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEec-CC
Q 008058          141 VCEIDPLTG--SLLGK--FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSD-NG  211 (579)
Q Consensus       141 v~iwd~~~~--~~~~~--~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~-~~  211 (579)
                      +.|||+.++  .+..+  |.+ ......+++|..+.+++.+|.  ..+.++|++.... ...+  .+..+..+...| .+
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSP  208 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCC
Confidence            999999876  22222  332 233567899998888888887  6899999984321 2222  234566778888 67


Q ss_pred             CEEEEEecCCCeEEEEEc-CCCccccceeEEeeecCce----eeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECC
Q 008058          212 KYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHPAV----FMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~  282 (579)
                      .|+++.  .|+.|.+||. +.-+..    ...+.+...    .+..+.|++.   ..|. +++. -..++|+.||+.
T Consensus       209 nY~cs~--~dg~iAiwD~~rnienp----l~~i~~~~N~~~~~l~~~aycPt---rtgl-la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  209 NYFCSN--SDGDIAIWDTYRNIENP----LQIILRNENKKPKQLFALAYCPT---RTGL-LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             Cceecc--ccCceeeccchhhhccH----HHHHhhCCCCcccceeeEEeccC---Ccch-hhhhccCcceEEEeccc
Confidence            787664  4999999994 332211    111112211    2344455421   2333 4444 446799999864

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.77  E-value=0.041  Score=52.75  Aligned_cols=245  Identities=16%  Similarity=0.206  Sum_probs=130.3

Q ss_pred             EEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEeeeccccc
Q 008058           12 SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        12 ~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..||||+.+++++          ..-.|.+||..+-....++.-+.. ......+..            ... .+.    
T Consensus        42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~------------~~~-ls~----  104 (342)
T PF06433_consen   42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN------------MFA-LSA----  104 (342)
T ss_dssp             EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG------------GEE-E-T----
T ss_pred             eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc------------ceE-Ecc----
Confidence            6799999888653          233689999999988887753322 000000000            000 011    


Q ss_pred             ccccCCcEEEEEECC--CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeE---
Q 008058           81 KRKLGSSLLVLGTGG--GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGK---  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~---  154 (579)
                          +++++++....  ..|.|-|+..++.+.++.   ...+..+--+++ +.|.+-+.||.+.-..+. .|+..++   
T Consensus       105 ----dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~---~PGC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  105 ----DGKFLYVQNFTPATSVTVVDLAAKKVVGEID---TPGCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             ----TSSEEEEEEESSSEEEEEEETTTTEEEEEEE---GTSEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             ----CCcEEEEEccCCCCeEEEEECCCCceeeeec---CCCEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence                15555554443  448888888888776663   234444444443 457788899999988887 5655433   


Q ss_pred             -eecCCCC-eeEEEEccCC-CEEEEEC-CeEEEEECCCCee--eEEeecC----------CCCEEEEEEecCCCEEEEEe
Q 008058          155 -FRASTKG-ISCMAVSSDG-KMLATAA-GQLKTFNCSDHKK--MQKFSGH----------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       155 -~~~~~~~-v~~l~~~p~g-~~l~~~~-g~i~vwd~~~~~~--~~~~~~h----------~~~v~~l~~~~~~~~l~s~s  218 (579)
                       |.....+ +..-++...+ .++...- |.|+--|+.....  ...+.--          .+...-+++++....|+.--
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence             2222222 2233444444 4554444 9999988876542  2222210          12233477877655554432


Q ss_pred             c-------CCC--eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeec
Q 008058          219 V-------GER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELR  288 (579)
Q Consensus       219 ~-------~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~  288 (579)
                      .       .|+  .|.++|+.+++..   ....+.++   +..+..+.    .+..+|++.+ .++.+.+||..+|+.++
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv---~Ri~l~~~---~~Si~Vsq----d~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRV---ARIPLEHP---IDSIAVSQ----DDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEE---EEEEEEEE---ESEEEEES----SSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEE---EEEeCCCc---cceEEEcc----CCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            1       122  4777788777644   22233333   22333441    2334665554 58999999999999887


Q ss_pred             ccC
Q 008058          289 NTK  291 (579)
Q Consensus       289 ~~~  291 (579)
                      ..+
T Consensus       327 ~~~  329 (342)
T PF06433_consen  327 SIE  329 (342)
T ss_dssp             EE-
T ss_pred             ehh
Confidence            654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.00066  Score=70.41  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=83.2

Q ss_pred             EEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008058          121 SAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~  194 (579)
                      +-..|+|...+|+.++    ..|.|.||- .+|++-+... ..-.+++++|+|..-.|+.|-  |.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3457889888887775    467888885 5676544332 223467899999877777776  8999999887776666


Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          195 FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      ...|..+|..+.|+|+|..++++- .-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d-~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLD-NPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcC-CCceeEEEEee
Confidence            678999999999999999999875 67899999876

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.77  E-value=0.0091  Score=59.80  Aligned_cols=216  Identities=14%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE-Ee-cc----------c---cccccccccc--ccccccc--------
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQT-EF-AD----------I---ASTETTSLYG--NRLEREH--------   63 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~-~~-~~----------~---~~~~~~~~~~--~~~~~~~--------   63 (579)
                      ..+.|+++..-||.|...|.|.||.+...+... .- ..          +   .....++.-.  +.+..|.        
T Consensus         5 ~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~   84 (395)
T PF08596_consen    5 THVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDA   84 (395)
T ss_dssp             EEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE--
T ss_pred             EEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheec
Confidence            456899998899999999999999876443221 00 00          0   0000010000  0000000        


Q ss_pred             ccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-------CCCCCCEEEEEEcc-----CC--
Q 008058           64 LSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-------DCHPGGVSAISFAT-----HG--  129 (579)
Q Consensus        64 ~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~-----~~--  129 (579)
                      ....+++++-.          +-.++++|..+|.+.|.|++....+..-.       ......|+++.|.-     |+  
T Consensus        85 ~~g~vtal~~S----------~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   85 KQGPVTALKNS----------DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             -S-SEEEEEE-----------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             cCCcEeEEecC----------CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            01223333321          26789999999999999998887765421       12345688888863     33  


Q ss_pred             -CEEEEEeCCCcEEEEeCC--C-Cce----eeEeecCCCCeeEEE-EccC---------------------CCEEEEEC-
Q 008058          130 -SCIYSAGADGMVCEIDPL--T-GSL----LGKFRASTKGISCMA-VSSD---------------------GKMLATAA-  178 (579)
Q Consensus       130 -~~l~s~~~dg~v~iwd~~--~-~~~----~~~~~~~~~~v~~l~-~~p~---------------------g~~l~~~~-  178 (579)
                       -.+++|...|.+.+|.+.  . +..    ......+.++|..|. ++.+                     ..++++++ 
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             358899999999999764  1 211    111223445555554 3211                     12455555 


Q ss_pred             CeEEEEECCCCeeeEEeecCCCCEEEEEEe-----cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS-----DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       179 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ..++++...+.+...+.....-....+.+-     ..+..|++-. .+|.++++.+..-+..
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EE
T ss_pred             cceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHh
Confidence            899999998877655544232233444553     2455566555 7999999999987654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.0057  Score=58.86  Aligned_cols=195  Identities=18%  Similarity=0.173  Sum_probs=116.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~  160 (579)
                      +.++.+--..+.|.-|+..+++...-.   +.+.+.++..-..+..|+++. . -+++++..++..+..+...     ..
T Consensus        37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~  111 (307)
T COG3386          37 GALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLN  111 (307)
T ss_pred             CEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcC
Confidence            445566667778999999877553222   334445555444455566653 3 3677777666553332211     13


Q ss_pred             CeeEEEEccCCCEEEEEC-------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          161 GISCMAVSSDGKMLATAA-------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      ..+.+.+.|+|.+.++..             |.++.+|. .+..++.+..+-..-+.|+||||++.|+.+-+..+.|..|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~  190 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY  190 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence            567788899998777532             33444443 4666666666666678899999999888776556788888


Q ss_pred             EcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEECCCceeecccCC
Q 008058          228 RTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       228 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~  292 (579)
                      ++..  +.....................+..     .+|.+-+++..+| .|.+|+.+ ++.+..+.-
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-----adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-----ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEe-----CCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            8763  2111111112222233334445554     6777765554454 99999988 777765543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.76  E-value=0.037  Score=58.11  Aligned_cols=199  Identities=11%  Similarity=0.155  Sum_probs=116.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-.|..+|+.+..+...............    ....  ....+            +..+++++.++
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~----~~~r--g~av~------------~~~v~v~t~dg  130 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCD----VVNR--GVALY------------DGKVFFGTLDA  130 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccc----cccc--cceEE------------CCEEEEEcCCC
Confidence            456777777889999999999998877532110000000000    0000  00001            45688899999


Q ss_pred             eEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCCC-------
Q 008058           97 DVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTK-------  160 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~-------  160 (579)
                      .+.-.|..+|+.+++.......   .+++--.--++ .++.+.      .+|.|+.+|..+|+.+..+..-..       
T Consensus       131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~  209 (527)
T TIGR03075       131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK  209 (527)
T ss_pred             EEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence            9999999999998876432111   12111001134 455543      268999999999988766443111       


Q ss_pred             ------------------------Ce-eEEEEccCCCEEEEEC------------------CeEEEEECCCCeeeEEeec
Q 008058          161 ------------------------GI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       161 ------------------------~v-~~l~~~p~g~~l~~~~------------------g~i~vwd~~~~~~~~~~~~  197 (579)
                                              .+ ..+++.|+..+++.+.                  .+|.-.|++||+..-.++.
T Consensus       210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~  289 (527)
T TIGR03075       210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT  289 (527)
T ss_pred             cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence                                    11 1346666666666543                  1577778899988777653


Q ss_pred             CCCCE---------EEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          198 HPGAV---------RFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       198 h~~~v---------~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ....+         .-+.+..+|+   .++.+ ..+|.+++.|-.+++..
T Consensus       290 ~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       290 TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             CCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCcee
Confidence            22211         1223334665   44455 48999999999988753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.71  E-value=8.6e-06  Score=67.90  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHh-cccccCCCChhHHHHHHHHHHH
Q 008058          492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNH-GHHLLSQESLTPMLSSLYKVRK  560 (579)
Q Consensus       492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h-~~~l~s~~~l~~~l~~l~~~~~  560 (579)
                      ..|+.+|..|+.....+||+|+. .|+++++.+...+..+.+||+.| ...|...|++...|+.|----+
T Consensus        49 ~~l~~~i~~L~~~~l~~LL~~ir-~WNTNsr~~~vAQ~vL~~il~~~~~~~L~~~~~~~~~le~lipYte  117 (141)
T PF08625_consen   49 EELDEVIKKLDDEQLEKLLRFIR-DWNTNSRTSHVAQRVLNAILKSHPPEELLKIPGLKEILEALIPYTE  117 (141)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHhCCHHHHHccccHHHHHHHHhhhHH
Confidence            57999999999999999999998 89999999999999999999955 5567899999988888865554

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.71  E-value=0.023  Score=55.51  Aligned_cols=194  Identities=11%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             EEccCCCEEEEEeC-CC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           12 SFSPALDYFAICSG-DA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        12 ~fs~dg~~las~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +|.+||+.|+.++. ||  .+.+.|+.+++..+--.+..........+++                           .+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~---------------------------~~~   94 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPD---------------------------DRA   94 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TT---------------------------SSE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecC---------------------------CCe
Confidence            67889987776664 55  5666688888765533221111111111211                           444


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEe----------------------CCCcEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAG----------------------ADGMVCEI  144 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~----------------------~dg~v~iw  144 (579)
                      ++....+..|.-.|+.+.+.. .+......-+-...|  +.|+..++-.-                      ..+.|.-.
T Consensus        95 ~~Yv~~~~~l~~vdL~T~e~~-~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   95 LYYVKNGRSLRRVDLDTLEER-VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEETTTEEEEEETTT--EE-EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             EEEEECCCeEEEEECCcCcEE-EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            555556678888888887653 222233444433444  34555543321                      11346667


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEE-EEC-C---e--EEEEECCC-CeeeEEeecCC--CCEEEEEEecCCCEE
Q 008058          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLA-TAA-G---Q--LKTFNCSD-HKKMQKFSGHP--GAVRFMTFSDNGKYV  214 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~-g---~--i~vwd~~~-~~~~~~~~~h~--~~v~~l~~~~~~~~l  214 (579)
                      |+.+|+....+. ....+..+.|+|....++ -|- |   .  -+||-+++ +...+.+..|.  ..+..=-|.|||..+
T Consensus       174 dl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i  252 (386)
T PF14583_consen  174 DLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI  252 (386)
T ss_dssp             ETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred             ECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence            888887655555 456788999999655444 443 2   2  25665543 33344443333  224445789999877


Q ss_pred             EEEec----CCCeEEEEEcCCCcc
Q 008058          215 LSSAV----GERYIALWRTDGVKK  234 (579)
Q Consensus       215 ~s~s~----~d~~i~vwd~~~~~~  234 (579)
                      ..-+.    .+..|.-+|+.+++.
T Consensus       253 ~y~~~~~~~~~~~i~~~d~~t~~~  276 (386)
T PF14583_consen  253 WYDSYTPGGQDFWIAGYDPDTGER  276 (386)
T ss_dssp             EEEEEETTT--EEEEEE-TTT--E
T ss_pred             EEEeecCCCCceEEEeeCCCCCCc
Confidence            65432    244677778877653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.71  E-value=0.0031  Score=67.61  Aligned_cols=142  Identities=16%  Similarity=0.307  Sum_probs=97.5

Q ss_pred             CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-----CCCEEEEEeCCCcEEEEeCCCCc--eeeE-e-
Q 008058           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-----HGSCIYSAGADGMVCEIDPLTGS--LLGK-F-  155 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~--~~~~-~-  155 (579)
                      ..+|+.-. ....|+-.|+.+|+++.........+|.+++-..     +...-+.|-.+..+..||++-..  .+.. . 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            34444443 3466999999999998777544444466654321     13345677788899999998532  3321 1 


Q ss_pred             -ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          156 -RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       156 -~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                       .......+|++-+.+|.+.+... |.|++||--..+....|++-..||.+|..+.||+++++++  +..+.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence             12344788998888875554444 9999999433333344677789999999999999999886  678888886

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.70  E-value=0.0055  Score=60.33  Aligned_cols=176  Identities=10%  Similarity=0.107  Sum_probs=101.7

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEE---EccC----CCEEEEEeC----------CCcEEEEeCCCC----ceeeE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAIS---FATH----GSCIYSAGA----------DGMVCEIDPLTG----SLLGK  154 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~---~~~~----~~~l~s~~~----------dg~v~iwd~~~~----~~~~~  154 (579)
                      +.|++.|..+.+.+..+.-.....+.+++   |..+    ..+|+.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788888877766554333334455443   4332    456776642          288999999874    12222


Q ss_pred             e--ecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCe-eeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          155 F--RASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHK-KMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       155 ~--~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~-~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      +  ....++|++++-- +|.++++.++.|.+|++...+ ....- ......+.++...  +.+++.+. .-+.+.++..+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD-~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGD-AMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEE-SSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEE-cccCEEEEEEE
Confidence            1  2246789999877 566666666999999998877 43322 2223356666655  55777765 46667777554


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ..... ...+.. +.....+..+.+-     +++..+++++.+|.+.++..+
T Consensus       158 ~~~~~-l~~va~-d~~~~~v~~~~~l-----~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  158 EENNK-LILVAR-DYQPRWVTAAEFL-----VDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             TTTE--EEEEEE-ESS-BEEEEEEEE------SSSEEEEEETTSEEEEEEE-
T ss_pred             ccCCE-EEEEEe-cCCCccEEEEEEe-----cCCcEEEEEcCCCeEEEEEEC
Confidence            42211 112222 2333333344443     455699999999999999764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.018  Score=58.02  Aligned_cols=193  Identities=12%  Similarity=0.149  Sum_probs=130.3

Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++++++.. +++...++.|.+.|..+........... .                  -..+.+.+.         +..+
T Consensus        79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~------------------P~~~~~~~~---------~~~v  130 (381)
T COG3391          79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-G------------------PVGLAVDPD---------GKYV  130 (381)
T ss_pred             eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-C------------------CceEEECCC---------CCEE
Confidence            477888874 4444456899999977777666543211 1                  112333332         4445


Q ss_pred             EEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceee-E---eecCCCC
Q 008058           90 VLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLG-K---FRASTKG  161 (579)
Q Consensus        90 ~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~-~---~~~~~~~  161 (579)
                      +++..   ++.+.+.|..++........+. .+ ..+++.|+|..++.+. .++.|.+.|.......+ .   .......
T Consensus       131 YV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~  208 (381)
T COG3391         131 YVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG  208 (381)
T ss_pred             EEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCC
Confidence            55554   6789999999999887754443 34 9999999999777665 78899999976555443 1   0112234


Q ss_pred             eeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          162 ISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ...+.++|+|..+....     +.+...|..++..... ...-......+.++|+|.++.+.-...+.+.+-|..+..
T Consensus       209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            57789999999777665     3888899888876654 221111456789999999988875556788888877765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00029  Score=66.91  Aligned_cols=93  Identities=9%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             EEEEeCCCCceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          141 VCEIDPLTGSLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       141 v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      |++.+..+.+...-+..+...|..++|+|..+ ++..++  +.|+|.|+++...+..+..| ..+++++|.-|...++.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            66666666666666666777999999999887 555666  79999999999999888877 789999999988888888


Q ss_pred             ecCCCeEEEEEcCCCcc
Q 008058          218 AVGERYIALWRTDGVKK  234 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~  234 (579)
                      |...|.|.+||++..+.
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            88899999999998763

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.52  E-value=0.073  Score=49.49  Aligned_cols=193  Identities=12%  Similarity=0.149  Sum_probs=106.1

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      .+.+.|.+.+        +.++++....+.|..++. +|+.+.++.-.-.+..-++++..++.++++.-.++.+.++++.
T Consensus        24 ~SGLTy~pd~--------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   24 LSGLTYNPDT--------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             EEEEEEETTT--------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ccccEEcCCC--------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            5667777654        667777888888988886 4777766643334678899998888777766678999999884


Q ss_pred             CCc------eeeEee-----cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---CeeeE--Ee------ecCCCCEE
Q 008058          148 TGS------LLGKFR-----ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD---HKKMQ--KF------SGHPGAVR  203 (579)
Q Consensus       148 ~~~------~~~~~~-----~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~---~~~~~--~~------~~h~~~v~  203 (579)
                      ...      ....+.     .++..+-.++|+|.++.|+.+-  .-..+|.+..   ...+.  ..      ......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      112222     2344789999999877777765  3344444432   11111  11      12345688


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec-------CceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH-------PAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  276 (579)
                      ++.++|....|+.-+..++.|..+| ..++..   ....+..       .-.....+++.     ++|. |...++-+..
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~---~~~~L~~g~~gl~~~~~QpEGIa~d-----~~G~-LYIvsEpNlf  244 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVV---SSLSLDRGFHGLSKDIPQPEGIAFD-----PDGN-LYIVSEPNLF  244 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EE---EEEE-STTGGG-SS---SEEEEEE------TT---EEEEETTTEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEE---EEEEeCCcccCcccccCCccEEEEC-----CCCC-EEEEcCCceE
Confidence            9999998766666666888999999 444432   1222222       11234556676     7774 4455566666


Q ss_pred             EEE
Q 008058          277 YIW  279 (579)
Q Consensus       277 ~iw  279 (579)
                      ++|
T Consensus       245 y~f  247 (248)
T PF06977_consen  245 YRF  247 (248)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.52  E-value=0.066  Score=51.65  Aligned_cols=143  Identities=15%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             CCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058          118 GGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v  183 (579)
                      ...+++...|+|.+.++...           -|.|+.+|. .+..++.+..+-..-+.|+||||++.++.+.   +.|+-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            45678889999986554433           134566665 4666666665555668899999999888887   78888


Q ss_pred             EECCC--C----e-eeEEeecCCCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeEEeeecCceeeEeEEe
Q 008058          184 FNCSD--H----K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       184 wd~~~--~----~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                      |++..  +    + ....+....+..-.++...+|.+.+++. .+| .|.+|+.. ++..     ....-+....++.+|
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~-~~g~~v~~~~pd-G~l~-----~~i~lP~~~~t~~~F  262 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV-WGGGRVVRFNPD-GKLL-----GEIKLPVKRPTNPAF  262 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc-cCCceEEEECCC-CcEE-----EEEECCCCCCccceE
Confidence            87752  1    1 1222233456667788888888775443 444 89999988 5533     333444355566666


Q ss_pred             cCCcccCCCcEEEEEEc
Q 008058          256 DNGGVDDAGLYVLAISE  272 (579)
Q Consensus       256 ~~~~~~~~~~~l~s~~~  272 (579)
                      -.    ++.+.|.+.+.
T Consensus       263 gG----~~~~~L~iTs~  275 (307)
T COG3386         263 GG----PDLNTLYITSA  275 (307)
T ss_pred             eC----CCcCEEEEEec
Confidence            41    44555555444

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.51  E-value=0.00076  Score=68.83  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=85.5

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-
Q 008058          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-  191 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-  191 (579)
                      |...|.--+++..+++++.|+.-|.+++|+-..++... +..+..+.+..+.++++..++|.|+  |.|.++.+....+ 
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            44556666677789999999999999999965554322 2223445667778888888888887  8999998876432 


Q ss_pred             ----eEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          192 ----MQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       192 ----~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                          +..+ ..|...|+++.|++++..+++|- ..|+|..-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD-~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD-SQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecC-CCceEEEEEech
Confidence                1111 24778899999999999999875 688888888877

>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=97.50  E-value=0.00048  Score=63.28  Aligned_cols=99  Identities=20%  Similarity=0.306  Sum_probs=80.0

Q ss_pred             chhhhhhccce---------eecccCChhhHHHHhhccC------hhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q 008058          473 SALEATLFNGI---------DFETNIPVKKMRATILSLS------PTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVN  537 (579)
Q Consensus       473 ~~~~~~l~~~l---------~l~~~~~~~~i~~tv~~Lp------~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~  537 (579)
                      ..+...|..+-         +.++..++..|+..|+.|.      ...+..||+++..++.++. ..++++.|+...|+.
T Consensus       111 s~f~~lL~~~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~-dfElvQa~l~vFLk~  189 (237)
T PF04192_consen  111 SEFTRLLRSASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRR-DFELVQAYLSVFLKV  189 (237)
T ss_pred             CHHHHHHHhhcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            34555555543         4667789999999999999      6778889999998887665 599999999999999


Q ss_pred             hcccccCCCC---hhHHHHHHHHHHHH---hh-----hhhhhhhce
Q 008058          538 HGHHLLSQES---LTPMLSSLYKVRKK---KL-----FASAFTCFI  572 (579)
Q Consensus       538 h~~~l~s~~~---l~~~l~~l~~~~~~---r~-----~~~~~~~~~  572 (579)
                      |+..|+..++   |...|..|.+..++   |+     |++-+.+|+
T Consensus       190 Hgd~i~~~~~~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl  235 (237)
T PF04192_consen  190 HGDVIMESEEEEELREALEELREAQESEWKRLDDLFQYCSCVVSFL  235 (237)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            9999999999   99999999988874   44     555444444

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.47  E-value=0.013  Score=59.65  Aligned_cols=131  Identities=11%  Similarity=0.187  Sum_probs=76.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      ++++++ +.+|.-.+|.....+..      ..+.-..++|.+.++ +++-...++|.++.--+.+....++.. ..+..|
T Consensus        44 gr~v~V-~g~geY~iyt~~~~r~k------~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~I  114 (443)
T PF04053_consen   44 GRFVLV-CGDGEYEIYTALAWRNK------AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKI  114 (443)
T ss_dssp             SSEEEE-EETTEEEEEETTTTEEE------EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-EEEE
T ss_pred             CCEEEE-EcCCEEEEEEccCCccc------ccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-cccceE
Confidence            666666 88888888885443332      123456788988554 666666888999742223332334322 223333


Q ss_pred             EEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          166 AVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       166 ~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      -.   |.+|...+ +.|.+||+.+++.++.+...  +|..+.|+++|.+++..+  +..+.+++....
T Consensus       115 f~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--~~~i~il~~~~~  175 (443)
T PF04053_consen  115 FG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--KDSIYILKYNLE  175 (443)
T ss_dssp             E----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE---S-SEEEEEE-HH
T ss_pred             Ec---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe--CCeEEEEEecch
Confidence            32   88888777 77999999999999998733  489999999999999886  457888775543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.44  E-value=0.0085  Score=47.13  Aligned_cols=95  Identities=18%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             EccCC-CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           13 FSPAL-DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        13 fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      |..|| +.|+.|+.|..||||+  ....+.+++....                   ++++.-..          ...++.
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~-------------------v~~L~~~~----------~~~F~Y   58 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDK-------------------VTSLCSLG----------GGRFAY   58 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccc-------------------eEEEEEcC----------CCEEEE
Confidence            55565 5899999999999998  3466666653221                   12222111          566999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc---CCC-EEEEEeCCCcEE
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT---HGS-CIYSAGADGMVC  142 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~---~~~-~l~s~~~dg~v~  142 (579)
                      +..+|+|-+|+-  ...+++....|  .++++.+..   ||. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~--~~RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDR--SQRLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeC--cceeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            999999999976  34445554333  356665543   332 488888888774

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.43  E-value=0.092  Score=48.65  Aligned_cols=175  Identities=11%  Similarity=0.104  Sum_probs=111.3

Q ss_pred             EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|.++|.++-+.+.-|  .|+.+|..+|+......-..              ..++..++.+             ++.+.
T Consensus        51 ~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------~~FgEGit~~-------------~d~l~  103 (264)
T PF05096_consen   51 EFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------RYFGEGITIL-------------GDKLY  103 (264)
T ss_dssp             EEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------T--EEEEEEE-------------TTEEE
T ss_pred             EecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------cccceeEEEE-------------CCEEE
Confidence            4556776666666544  78999999998776554211              1111111110             14556


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (579)
                      ...-.++...+||..+-+.+.++.-  .+.=++++  .||+.|+.......++.+|..+.+..+.+....     ..++-
T Consensus       104 qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE  179 (264)
T PF05096_consen  104 QLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNE  179 (264)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEE
T ss_pred             EEEecCCeEEEEccccceEEEEEec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEe
Confidence            6677789999999999888777642  33446776  477788888788899999999888777665432     25666


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec------------C---CCCEEEEEEecCCCEEEEEe
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG------------H---PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~------------h---~~~v~~l~~~~~~~~l~s~s  218 (579)
                      +.+- +|.+.|-.=  ..|...|..+|+.+..+.-            +   ..-.+.|++.|....|+.+|
T Consensus       180 LE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  180 LEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            7776 666555543  7899999999988765520            1   24478999999887777766

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.0006  Score=68.70  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=73.6

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iw  144 (579)
                      .....+.|.|.         -.++|+++.+|.|.++... .+.++.+. -|...++ +++|.|||+.++.|-.||+|++.
T Consensus        21 ~~i~~~ewnP~---------~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~   89 (665)
T KOG4640|consen   21 INIKRIEWNPK---------MDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPDGKLLAVGFKDGTIRLH   89 (665)
T ss_pred             cceEEEEEcCc---------cchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence            34456778775         6789999999999999988 66666663 3556666 99999999999999999999999


Q ss_pred             eCCCCceeeEeec-CCCCeeEEEEcc
Q 008058          145 DPLTGSLLGKFRA-STKGISCMAVSS  169 (579)
Q Consensus       145 d~~~~~~~~~~~~-~~~~v~~l~~~p  169 (579)
                      |..++..+..+.. ....|.++-|+|
T Consensus        90 Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   90 DVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EccCCCceeccccccccchheeeccc
Confidence            9999987776322 344778888863

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.39  E-value=0.022  Score=50.62  Aligned_cols=204  Identities=11%  Similarity=0.113  Sum_probs=119.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCC--CceeeEeec---
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG---SCIYSAGADGMVCEIDPLT--GSLLGKFRA---  157 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~~~dg~v~iwd~~~--~~~~~~~~~---  157 (579)
                      +.++.+--..|.|.-||..+++......++.  ++.++.+--.|   .+.+.++..-.|--||...  -...+++..   
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            5677777778888889999887654443332  24444443233   2344444444555677432  222333111   


Q ss_pred             --CCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          158 --STKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       158 --~~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                        .....+.-..+|+|++++..-           |.++.|-..  ..+..+...-+--+.++|+.+.+.+...-+-+-.|
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEE
Confidence              123556667899999955332           345555432  12222223334446789998888777665567788


Q ss_pred             EEEE--cCCCccccceeEEeeec----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058          225 ALWR--TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       225 ~vwd--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                      .-||  ..++.......++.+..    ........+..     .+|...++.-..|+|..+|..+|+.+..++-....++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-----~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit  257 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-----TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT  257 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-----cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence            7788  66665544445555443    22223334444     5777777777788999999999999887664444333

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.38  E-value=0.15  Score=50.88  Aligned_cols=163  Identities=11%  Similarity=0.125  Sum_probs=90.6

Q ss_pred             EEEEEccCCeEEE-Eec---CCCCCCEEEEEEccCCCEEEEE--eCCC---cEEEEeCCCCceeeEeecC-CC---CeeE
Q 008058           98 VLALAVSAGQLKW-RLS---DCHPGGVSAISFATHGSCIYSA--GADG---MVCEIDPLTGSLLGKFRAS-TK---GISC  164 (579)
Q Consensus        98 i~iwd~~~~~~~~-~~~---~~h~~~V~~l~~~~~~~~l~s~--~~dg---~v~iwd~~~~~~~~~~~~~-~~---~v~~  164 (579)
                      +.++|+.+++... ...   .....-+..+.|.++++.|+..  +.+.   .+.++|..++.....+... ..   ....
T Consensus       160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~  239 (353)
T PF00930_consen  160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP  239 (353)
T ss_dssp             EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred             EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence            5667777766421 111   1234468899999999844443  3332   4667788777554333322 22   2235


Q ss_pred             EEEc-cCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEE-EEEecCCCEEEEEecCC----CeEEEEEcC-CC
Q 008058          165 MAVS-SDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGE----RYIALWRTD-GV  232 (579)
Q Consensus       165 l~~~-p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~~d----~~i~vwd~~-~~  232 (579)
                      ..+. +++..++..+     ..|++++...+. ...+....-.|.. +.++++++.++..+..+    ..++.-++. .+
T Consensus       240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             cccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            5554 7776666544     488888987776 4466656677865 67888887766555332    355555666 43


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      ...      .+...........|+     |+|++++-...
T Consensus       319 ~~~------~LT~~~~~~~~~~~S-----pdg~y~v~~~s  347 (353)
T PF00930_consen  319 EPK------CLTCEDGDHYSASFS-----PDGKYYVDTYS  347 (353)
T ss_dssp             EEE------ESSTTSSTTEEEEE------TTSSEEEEEEE
T ss_pred             CeE------eccCCCCCceEEEEC-----CCCCEEEEEEc
Confidence            322      222222222456666     89888776543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.36  E-value=0.039  Score=55.31  Aligned_cols=211  Identities=16%  Similarity=0.137  Sum_probs=105.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|  .+++.|.=| ++|.|..+|.+.|.|++....+..-.-..          .+........++++.|..-..+. 
T Consensus        85 ~~g~v--tal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~----------~~~~~~~~~~vt~ieF~vm~~~~-  150 (395)
T PF08596_consen   85 KQGPV--TALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE----------SFLSKSSSSYVTSIEFSVMTLGG-  150 (395)
T ss_dssp             -S-SE--EEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG------------T-SS----EEEEEEEEEE-TT-
T ss_pred             cCCcE--eEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc----------cccccccccCeeEEEEEEEecCC-
Confidence            46888  555887555 99999999999999998877776522111          00112334566777776422110 


Q ss_pred             cccCCcEEEEEECCCeEEEEEccC---CeEEEE---ecCCCCCCEEEEE-EccC-C-------------------CEEEE
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSA---GQLKWR---LSDCHPGGVSAIS-FATH-G-------------------SCIYS  134 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~---~~~~~~---~~~~h~~~V~~l~-~~~~-~-------------------~~l~s  134 (579)
                      .....-.+++|+..|.+.+|.+.-   +.....   ....+.++|..+. |+.+ |                   +.++.
T Consensus       151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV  230 (395)
T PF08596_consen  151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV  230 (395)
T ss_dssp             SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred             CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence            000145789999999999998752   222111   1124566776665 4322 1                   12334


Q ss_pred             EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc-----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC----CCEE
Q 008058          135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS-----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP----GAVR  203 (579)
Q Consensus       135 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~-----p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~----~~v~  203 (579)
                      ...+..++++.+.+.+..++..........+.+-     ..+..|++-.  |.|++|.+..-+.+..+.-+.    ..+.
T Consensus       231 vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~  310 (395)
T PF08596_consen  231 VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS  310 (395)
T ss_dssp             EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred             EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc
Confidence            4457779999998887766644222233344442     2333444332  999999999888887776432    2234


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEE
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ...++++|..++-.+  ...+.++.
T Consensus       311 ~ssis~~Gdi~~~~g--psE~~l~s  333 (395)
T PF08596_consen  311 SSSISRNGDIFYWTG--PSEIQLFS  333 (395)
T ss_dssp             T-EE-TTS-EEEE-S--SSEEEEEE
T ss_pred             ccEECCCCCEEEEeC--cccEEEEE
Confidence            456677777665554  33444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.36  E-value=0.13  Score=47.96  Aligned_cols=187  Identities=11%  Similarity=0.120  Sum_probs=96.9

Q ss_pred             EEEEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      -++|+|+.+. +|+....+.|...+. +|+.+..+.-..                 ..+.-.+++..          +..
T Consensus        26 GLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-----------------~~D~EgI~y~g----------~~~   77 (248)
T PF06977_consen   26 GLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-----------------FGDYEGITYLG----------NGR   77 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS------------------SSEEEEEE-S----------TTE
T ss_pred             ccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-----------------CCCceeEEEEC----------CCE
Confidence            3499998664 445556778877786 588877765221                 11222333322          344


Q ss_pred             EEEEE-CCCeEEEEEccCCe------EEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---CceeeE
Q 008058           89 LVLGT-GGGDVLALAVSAGQ------LKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT---GSLLGK  154 (579)
Q Consensus        89 l~~~~-~~g~i~iwd~~~~~------~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~  154 (579)
                      +++.. .++.+.++++....      ...++    ...++..+-+++|+|.++.|+.+-...-..+|.+..   ...+..
T Consensus        78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~  157 (248)
T PF06977_consen   78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV  157 (248)
T ss_dssp             EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred             EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence            55555 47888888883321      01111    123556799999999888888877666666665542   111111


Q ss_pred             --e---e---cCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEE
Q 008058          155 --F---R---ASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 --~---~---~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~l  214 (579)
                        .   .   .....+.+++++|.. ++++...  ..|..+| .+|+.+..+.-..         ...-.|+|.++|+..
T Consensus       158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY  236 (248)
T PF06977_consen  158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY  236 (248)
T ss_dssp             EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred             ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence              1   1   123367899999964 5555555  7899999 6777665553211         346789999999765


Q ss_pred             EEEecCCCeEEEE
Q 008058          215 LSSAVGERYIALW  227 (579)
Q Consensus       215 ~s~s~~d~~i~vw  227 (579)
                      ++ + +-+..+++
T Consensus       237 Iv-s-EpNlfy~f  247 (248)
T PF06977_consen  237 IV-S-EPNLFYRF  247 (248)
T ss_dssp             EE-E-TTTEEEEE
T ss_pred             EE-c-CCceEEEe
Confidence            55 4 55555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.33  E-value=0.053  Score=57.45  Aligned_cols=124  Identities=12%  Similarity=0.192  Sum_probs=70.8

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      .|.+++.. +.. ..+..+.  ..+.-.|+|||+.+++....            +.+.+.++..+....   ...+.|..
T Consensus       380 ~Lwv~~~g-g~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Iss  452 (591)
T PRK13616        380 SLWVGPLG-GVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISE  452 (591)
T ss_pred             EEEEEeCC-Ccc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCe
Confidence            35555542 222 2333333  37888999998887777532            233333443333222   23457999


Q ss_pred             EEEccCCCEEEEEC-CeEEE---EECCCCee-e---EEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          165 MAVSSDGKMLATAA-GQLKT---FNCSDHKK-M---QKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       165 l~~~p~g~~l~~~~-g~i~v---wd~~~~~~-~---~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      +.|+|||..++... |.|++   -....|.. +   ..+. +-...+.++.|.+++..++. . .++.-.+|.+
T Consensus       453 l~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~-~-~~~~~~v~~v  524 (591)
T PRK13616        453 LQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG-R-SDPEHPVWYV  524 (591)
T ss_pred             EEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEE-e-cCCCCceEEE
Confidence            99999999888765 77777   44344431 1   1122 22334688999999986544 3 2333344543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0032  Score=67.50  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE-
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC-  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~-  164 (579)
                      +..+++|+..|.|...|+..+-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.+. 
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            5568999999999999887652211111234579999999999999999999999999999999998888777665444 


Q ss_pred             --EEEccCCCEEEEEC--CeEEEEEC
Q 008058          165 --MAVSSDGKMLATAA--GQLKTFNC  186 (579)
Q Consensus       165 --l~~~p~g~~l~~~~--g~i~vwd~  186 (579)
                        +.+..++..+++++  |.  +|.+
T Consensus       179 i~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeCCCcEEEEccCCCc--eEEE
Confidence              44555667788887  44  5544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.22  E-value=0.19  Score=51.03  Aligned_cols=97  Identities=22%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-CCC
Q 008058          125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-PGA  201 (579)
Q Consensus       125 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-~~~  201 (579)
                      ++.+....+....++.+.+.+-...+.   +. ..+++..|++||+|+++|.-.  |.+.+.+..-.+.+..+... ...
T Consensus       186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~  261 (410)
T PF04841_consen  186 LSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP  261 (410)
T ss_pred             eecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence            344444444444555555444222211   22 235899999999999998766  88888877666666666433 345


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          202 VRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ...|.|.-+...++.   ....+.+..
T Consensus       262 p~~~~WCG~dav~l~---~~~~l~lvg  285 (410)
T PF04841_consen  262 PKQMAWCGNDAVVLS---WEDELLLVG  285 (410)
T ss_pred             CcEEEEECCCcEEEE---eCCEEEEEC
Confidence            667777765433322   234455554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.21  E-value=0.33  Score=49.72  Aligned_cols=200  Identities=14%  Similarity=0.139  Sum_probs=109.5

Q ss_pred             cceEEeeecccccccccCCcEEEEE-ECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---  139 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~-~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---  139 (579)
                      ...+.+...+|+      +++++.+ +.+|.    ++++|+.+|+.+......  ..-..+.|.++++.|+....+.   
T Consensus       123 ~~~~~~~~~Spd------g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  123 YVSLGGFSVSPD------GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             -EEEEEEEETTT------SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred             eEEeeeeeECCC------CCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence            334434444444      6666655 45555    999999999876543221  1123499999988877665333   


Q ss_pred             --------cEEEEeCCCCce--eeEeecCCCC--eeEEEEccCCCEEEEEC------CeEEEEECCCC----eeeEEeec
Q 008058          140 --------MVCEIDPLTGSL--LGKFRASTKG--ISCMAVSSDGKMLATAA------GQLKTFNCSDH----KKMQKFSG  197 (579)
Q Consensus       140 --------~v~iwd~~~~~~--~~~~~~~~~~--v~~l~~~p~g~~l~~~~------g~i~vwd~~~~----~~~~~~~~  197 (579)
                              .|+.|.+.+...  ...|......  ...+..++|+++++...      ..+++.|+..+    .....+..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                    378888876643  2445544433  56888999999988654      25888888874    23334443


Q ss_pred             CCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEeeecCc-eeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          198 HPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       198 h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                      +...+....-+..+.+++.+..  ..+.|...++..........+ ...+.. ..+..+...      .+.+++....++
T Consensus       275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~-l~~~~~~~~l~~~~~~------~~~Lvl~~~~~~  347 (414)
T PF02897_consen  275 REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV-LIPEDEDVSLEDVSLF------KDYLVLSYRENG  347 (414)
T ss_dssp             SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE-EE--SSSEEEEEEEEE------TTEEEEEEEETT
T ss_pred             CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE-EcCCCCceeEEEEEEE------CCEEEEEEEECC
Confidence            4444443333334444444321  235677777777653211112 222322 344444332      345555555566


Q ss_pred             --eEEEEECC
Q 008058          275 --VCYIWYGQ  282 (579)
Q Consensus       275 --~i~iwd~~  282 (579)
                        .|++|++.
T Consensus       348 ~~~l~v~~~~  357 (414)
T PF02897_consen  348 SSRLRVYDLD  357 (414)
T ss_dssp             EEEEEEEETT
T ss_pred             ccEEEEEECC
Confidence              68888888

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.21  E-value=0.12  Score=56.27  Aligned_cols=198  Identities=16%  Similarity=0.230  Sum_probs=116.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-------CEEEEEEcc----------------CCCEEEEEeCCCcEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-------GVSAISFAT----------------HGSCIYSAGADGMVC  142 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-------~V~~l~~~~----------------~~~~l~s~~~dg~v~  142 (579)
                      +..+++++.++.|.-.|..+|+.++++......       ..+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            678999999999999999999999887432111       122333321                344788888999999


Q ss_pred             EEeCCCCceeeEeecCCCCe-------------eEEEEcc--CCCEEEEE------------CCeEEEEECCCCeeeEEe
Q 008058          143 EIDPLTGSLLGKFRASTKGI-------------SCMAVSS--DGKMLATA------------AGQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v-------------~~l~~~p--~g~~l~~~------------~g~i~vwd~~~~~~~~~~  195 (579)
                      -.|.++|+....|.. .+.|             ..+.-.|  .+..+++|            +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 1111             0111122  12344444            267999999999988776


Q ss_pred             ecC---------CC--------CE-EEEEEecCCCEEEEEec-----------------CCCeEEEEEcCCCccccceeE
Q 008058          196 SGH---------PG--------AV-RFMTFSDNGKYVLSSAV-----------------GERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       196 ~~h---------~~--------~v-~~l~~~~~~~~l~s~s~-----------------~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      ..-         .+        .+ ..+++.+....++....                 ..+.|.-.|.++++..   -.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~---W~  429 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER---WV  429 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE---EE
Confidence            411         00        01 22344444333333210                 1234556666666543   22


Q ss_pred             EeeecCcee-------eEeEEecCCcccCCCc---EEEEEEcCCeEEEEECCCceeecccC
Q 008058          241 LAMEHPAVF-------MDCRCIDNGGVDDAGL---YVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       241 ~~~~~~~~~-------~~~~~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      +...|++..       ...+.+.    ..+|+   .++.++.+|.++++|.++|+.+...+
T Consensus       430 ~Q~~~hD~WD~D~~~~p~L~d~~----~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       430 FQTVHHDLWDMDVPAQPSLVDLP----DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ecccCCccccccccCCceEEeee----cCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            222222110       1111121    02553   78999999999999999999886544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.17  E-value=0.083  Score=52.90  Aligned_cols=75  Identities=11%  Similarity=0.259  Sum_probs=50.8

Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecC-----------------CCEEEEEecC
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDN-----------------GKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~-----------------~~~l~s~s~~  220 (579)
                      .+.+++.+|++++.++.+  |.|.++|+.++..++.++|..+. +.-+.....                 ..+|+.=.-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            567889999999998888  99999999999888888776543 111111111                 1234433335


Q ss_pred             CCeEEEEEcCCCccc
Q 008058          221 ERYIALWRTDGVKKQ  235 (579)
Q Consensus       221 d~~i~vwd~~~~~~~  235 (579)
                      -|.|.||+++.+...
T Consensus       389 Rg~lEvW~~~~g~Rv  403 (415)
T PF14655_consen  389 RGILEVWSMRQGPRV  403 (415)
T ss_pred             CCeEEEEecCCCCEE
Confidence            778888888887643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.17  E-value=0.3  Score=48.40  Aligned_cols=139  Identities=11%  Similarity=0.010  Sum_probs=76.5

Q ss_pred             eEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEe--------------------CCCcEEEEeCCCCceeeE
Q 008058           97 DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAG--------------------ADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~--------------------~dg~v~iwd~~~~~~~~~  154 (579)
                      .+.++|-.+.+...+.....  ..--+++-|.|..+.++|..                    ...++.+||+.+.+.+++
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~  237 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT  237 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence            38888888777765553322  23456788888888888762                    235799999999999999


Q ss_pred             eecCCC--CeeEEEEc--cCCCEEEEEC---CeEEEEEC-CCCe----eeEEeecC-----------------CCCEEEE
Q 008058          155 FRASTK--GISCMAVS--SDGKMLATAA---GQLKTFNC-SDHK----KMQKFSGH-----------------PGAVRFM  205 (579)
Q Consensus       155 ~~~~~~--~v~~l~~~--p~g~~l~~~~---g~i~vwd~-~~~~----~~~~~~~h-----------------~~~v~~l  205 (579)
                      +.-...  .+..+.|.  |+..+-+++.   ++|..|-- +.++    .+.++..-                 ..-|+.|
T Consensus       238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI  317 (461)
T PF05694_consen  238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI  317 (461)
T ss_dssp             EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred             EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence            875443  35566665  4455555544   56666644 3332    22222211                 2457899


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .+|.|.++|..++-.+|.|+.||+......
T Consensus       318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  318 LISLDDRFLYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence            999999999998878999999999887644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.018  Score=52.80  Aligned_cols=125  Identities=18%  Similarity=0.342  Sum_probs=84.0

Q ss_pred             cEEEEEECCCe-EEEEEccCCeEEEEec-------CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCC-cee
Q 008058           87 SLLVLGTGGGD-VLALAVSAGQLKWRLS-------DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTG-SLL  152 (579)
Q Consensus        87 ~~l~~~~~~g~-i~iwd~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~-~~~  152 (579)
                      .-++.+-.-|+ ..++|....+....+.       .+|.      .|||||.+|+..-.|     |.|-+||.+.+ +.+
T Consensus        81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv  154 (366)
T COG3490          81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV  154 (366)
T ss_pred             ceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence            34555655566 6778887776543331       2343      699999999887443     78999998754 556


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEECCeEEE--------------------EECCCCeeeEE--ee--cCCCCEEEEEEe
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAAGQLKT--------------------FNCSDHKKMQK--FS--GHPGAVRFMTFS  208 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~v--------------------wd~~~~~~~~~--~~--~h~~~v~~l~~~  208 (579)
                      ..|..|.-....+.+.+||+.++.+.|-|..                    .|..+|+.+.+  +.  -+.-.|..++..
T Consensus       155 gE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g  234 (366)
T COG3490         155 GEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIG  234 (366)
T ss_pred             cccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeC
Confidence            6788888888999999999999998754433                    34344444332  22  234557778888


Q ss_pred             cCCCEEEEE
Q 008058          209 DNGKYVLSS  217 (579)
Q Consensus       209 ~~~~~l~s~  217 (579)
                      +||+.++.+
T Consensus       235 ~dgtvwfgc  243 (366)
T COG3490         235 RDGTVWFGC  243 (366)
T ss_pred             CCCcEEEEE
Confidence            888765544

>smart00320 WD40 WD40 repeats

Probab=97.14  E-value=0.0015  Score=40.27  Aligned_cols=39  Identities=33%  Similarity=0.693  Sum_probs=33.6

Q ss_pred             CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          189 HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ++++..+..|...|.++.|++++..+++++ .|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASAS-DDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEec-CCCeEEEcC
Confidence            356677788999999999999998888887 799999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.38  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=28.0

Q ss_pred             CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          199 PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       199 ~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .+++..|++||+|++++.-. .+|.+.+.+..-.+
T Consensus       216 ~~~i~~iavSpng~~iAl~t-~~g~l~v~ssDf~~  249 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFT-DSGNLWVVSSDFSE  249 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEE-CCCCEEEEECcccc
Confidence            46899999999999998887 68998888765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.0099  Score=59.02  Aligned_cols=149  Identities=13%  Similarity=0.140  Sum_probs=98.7

Q ss_pred             CCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           16 ALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        16 dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      +.++|+ ++.....++=.|++.|+.+.+++.+.. ++...+.++..-..+.                    ...=++|-.
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~--------------------~e~TlvGLs  402 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLT--------------------SEQTLVGLS  402 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccc--------------------ccccEEeec
Confidence            444444 445555677789999999999886665 4444454442111111                    223478888


Q ss_pred             CCeEEEEEccCCeE-EEEecCCCC----CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceee-EeecCCCCeeEEEEc
Q 008058           95 GGDVLALAVSAGQL-KWRLSDCHP----GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG-KFRASTKGISCMAVS  168 (579)
Q Consensus        95 ~g~i~iwd~~~~~~-~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~v~~l~~~  168 (579)
                      +..|.-||++-... +....++|.    ..-.|++-..+| +++.||.+|.|++||- .+...+ .+.+-..+|..+..+
T Consensus       403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             CCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEee
Confidence            99999999874322 111112232    234566655555 7999999999999996 555444 477778899999999


Q ss_pred             cCCCEEEEEC-CeEEEEECC
Q 008058          169 SDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       169 p~g~~l~~~~-g~i~vwd~~  187 (579)
                      .+|+++++.+ ..+.+.++.
T Consensus       481 adGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  481 ADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccCcEEEEecccEEEEEEEe
Confidence            9999998887 677776653

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.13  Score=47.42  Aligned_cols=180  Identities=13%  Similarity=0.140  Sum_probs=106.1

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeC------------------CCcE
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGA------------------DGMV  141 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~------------------dg~v  141 (579)
                      +.+|+..-+|     |.|-+||...+-. +.++ ..|.-....+.+.+||+.++.+..                  .-.+
T Consensus       125 G~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl  203 (366)
T COG3490         125 GRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL  203 (366)
T ss_pred             CcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence            6666665544     4599999985532 3333 457777889999999999887632                  0123


Q ss_pred             EEEeCCCCceeeEe--e--cCCCCeeEEEEccCCCEEEEEC--Ce-----EEEEECCCCeeeEEee-------cCCCCEE
Q 008058          142 CEIDPLTGSLLGKF--R--ASTKGISCMAVSSDGKMLATAA--GQ-----LKTFNCSDHKKMQKFS-------GHPGAVR  203 (579)
Q Consensus       142 ~iwd~~~~~~~~~~--~--~~~~~v~~l~~~p~g~~l~~~~--g~-----i~vwd~~~~~~~~~~~-------~h~~~v~  203 (579)
                      .+.|..+|..+.+.  .  -+.-.|..++..+||+..+.+-  |.     -.+=-...++.+.-+.       .....|-
T Consensus       204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig  283 (366)
T COG3490         204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG  283 (366)
T ss_pred             EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence            44454556555442  2  2334788899999988777654  21     1111112233333221       2234577


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      +|+.+.+...++.++-..+...+||..++...+     .  .  ....+.-..     +.+.-+++.+.+|.+.++.
T Consensus       284 siA~n~~~glV~lTSP~GN~~vi~da~tG~vv~-----~--a--~l~daaGva-----~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         284 SIAANRRDGLVALTSPRGNRAVIWDAATGAVVS-----E--A--ALPDAAGVA-----AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             heeecccCCeEEEecCCCCeEEEEEcCCCcEEe-----c--c--cccccccce-----eccCceEEecCCceEEecc
Confidence            888887666766666556678999999987431     1  1  111111111     3445566777789988884

>PHA02713 hypothetical protein; Provisional

Probab=97.06  E-value=0.052  Score=57.61  Aligned_cols=182  Identities=7%  Similarity=-0.011  Sum_probs=91.4

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEecCCCC--CCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 008058           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHP--GGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~  152 (579)
                      +.+.++|+.+      ..+..||+.++... ....-..  .....+.  -+|+..+.||.++     ++..||..+.+-.
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            5566666643      34888999887653 1111111  1112222  2677777777654     4888998765322


Q ss_pred             e--EeecCCCCeeEEEEccCCCEEEEEC--C-----------------------eEEEEECCCCeee--EEeecCCCCEE
Q 008058          153 G--KFRASTKGISCMAVSSDGKMLATAA--G-----------------------QLKTFNCSDHKKM--QKFSGHPGAVR  203 (579)
Q Consensus       153 ~--~~~~~~~~v~~l~~~p~g~~l~~~~--g-----------------------~i~vwd~~~~~~~--~~~~~h~~~v~  203 (579)
                      .  .+.........+.  -+|++.+.|+  +                       .+..||..+.+-.  ..+...... .
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~  457 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P  457 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence            1  1111111111222  2677777776  1                       3677887766432  222111111 1


Q ss_pred             EEEEecCCCEEEEEecCC-----CeEEEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC--e
Q 008058          204 FMTFSDNGKYVLSSAVGE-----RYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--V  275 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d-----~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~  275 (579)
                      +++ .-+++..+.||..+     ..+..||..+ .+-.   .+..+..+-.....+.+       +|+..++|+.+|  .
T Consensus       458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---~~~~m~~~r~~~~~~~~-------~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---LITTTESRLSALHTILH-------DNTIMMLHCYESYML  526 (557)
T ss_pred             cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCee---EccccCcccccceeEEE-------CCEEEEEeeecceee
Confidence            222 23456656665311     2467888887 4421   23333333333334433       678888888888  5


Q ss_pred             EEEEECCCc
Q 008058          276 CYIWYGQNI  284 (579)
Q Consensus       276 i~iwd~~~~  284 (579)
                      +..||..+.
T Consensus       527 ~e~yd~~~~  535 (557)
T PHA02713        527 QDTFNVYTY  535 (557)
T ss_pred             hhhcCcccc
Confidence            566665443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0029  Score=63.99  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCee-EEEEccCCCEEEEEC--CeEEEEECCCCeeeE
Q 008058          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGIS-CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~  193 (579)
                      ...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+.+++|-  |+|++.|+.++..+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3568889999999999999999999999887 788888887777777 999999999999997  999999999988776


Q ss_pred             Eee-cCCCCEEEEEEec
Q 008058          194 KFS-GHPGAVRFMTFSD  209 (579)
Q Consensus       194 ~~~-~h~~~v~~l~~~~  209 (579)
                      .+. .-..+|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            632 2346677888863

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.03  E-value=0.081  Score=56.07  Aligned_cols=180  Identities=14%  Similarity=0.152  Sum_probs=95.1

Q ss_pred             CcEEEEEECC-C-----eEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCce-
Q 008058           86 SSLLVLGTGG-G-----DVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSL-  151 (579)
Q Consensus        86 ~~~l~~~~~~-g-----~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~-  151 (579)
                      +.+.++|+.+ |     ++..||+.+++... ...-...  ......+  +|...+.|+.||.     |-.||..+.+- 
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            5677788877 3     38899999888542 2111111  1111122  6777888888864     77788765432 


Q ss_pred             -eeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          152 -LGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 -~~~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                       +..+..........  .-+|.+.++|+        .++..||..+++..  ..+..-.... .++. -++...+.+| .
T Consensus       410 ~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG-~  484 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGG-F  484 (571)
T ss_pred             ccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECC-c
Confidence             11111111111112  22677888776        36888998876532  2222111111 1222 3455566666 4


Q ss_pred             CC-----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCC
Q 008058          221 ER-----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQN  283 (579)
Q Consensus       221 d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~  283 (579)
                      |+     +|..||..+.+-.   .+..+........++..       ++...++|+.||     +|..||..+
T Consensus       485 ~~~~~~~~VE~ydp~~~~W~---~v~~m~~~rs~~g~~~~-------~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  485 DGTSALSSVERYDPETNQWT---MVAPMTSPRSAVGVVVL-------GGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cCCCccceEEEEcCCCCcee---EcccCccccccccEEEE-------CCEEEEEecccCccccceeEEcCCCC
Confidence            54     3777888877533   22223333333333333       567777888776     455555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.99  E-value=0.17  Score=48.55  Aligned_cols=140  Identities=17%  Similarity=0.207  Sum_probs=90.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----------  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------  155 (579)
                      ++.|++|+.+| +++++........+..  +...|..+...|+-+.+++-+ |+.++++++..-......          
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            77899999999 9999994333222332  334599999999877766664 599999998754433310          


Q ss_pred             ----ecCCCCeeEEE---EccCCCEEEEEC-CeEEEEECCCC-----eeeEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058          156 ----RASTKGISCMA---VSSDGKMLATAA-GQLKTFNCSDH-----KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       156 ----~~~~~~v~~l~---~~p~g~~l~~~~-g~i~vwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~  222 (579)
                          ......+...+   -...+..++++. ..|.+|.....     +..+++. -...+..+.|.  ++.++.+.  .+
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~--~~  157 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGT--SK  157 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEe--CC
Confidence                11122444444   222344566665 78888877653     4555655 44778899998  44566664  44


Q ss_pred             eEEEEEcCCCcc
Q 008058          223 YIALWRTDGVKK  234 (579)
Q Consensus       223 ~i~vwd~~~~~~  234 (579)
                      ...+.|+.++..
T Consensus       158 ~f~~idl~~~~~  169 (275)
T PF00780_consen  158 GFYLIDLNTGSP  169 (275)
T ss_pred             ceEEEecCCCCc
Confidence            588999987653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>smart00320 WD40 WD40 repeats

Probab=96.94  E-value=0.0028  Score=39.02  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=29.4

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEID  145 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd  145 (579)
                      ..|...|.++.|++++..+++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            46888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.84  E-value=0.084  Score=52.74  Aligned_cols=137  Identities=17%  Similarity=0.326  Sum_probs=94.6

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-------EEEEeCCCcEEEEeCCCC-c-eeeEeecC-
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-------IYSAGADGMVCEIDPLTG-S-LLGKFRAS-  158 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-------l~s~~~dg~v~iwd~~~~-~-~~~~~~~~-  158 (579)
                      +..+.....++-.|+..|+.+..... |.. |+-+.+.|+++.       -+.|-.|..|.-||++-. . .+..-++| 
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            34444556699999999999866632 333 777778886542       234567888999998733 2 12222222 


Q ss_pred             ---CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          159 ---TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       159 ---~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                         .....|.+-..+| ++++|+  |.|++||- .+.. ..-+++-..+|..+..+.+|++++.++  +.++.+-++.-
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~  501 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI  501 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence               2356777777777 455555  99999996 4433 445788889999999999999998875  77888887643

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.72  E-value=0.083  Score=56.01  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=65.2

Q ss_pred             CCEEEEEEccCCCEEEEEe------CCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------
Q 008058          118 GGVSAISFATHGSCIYSAG------ADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------  179 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~------~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g---------  179 (579)
                      ..+.+.+++|+|+.++...      .|.  .+.+++. .+.. ..+.. ....++-.|+|||+.+++.. +         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678999999999877665      243  4555564 2333 33322 22478889999988777663 2         


Q ss_pred             ----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          180 ----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       180 ----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                          .+++.++..+....   ...+.|..+.|+|||..++...  ++.|++
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~V  472 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYL  472 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence                33333443333222   2356799999999999988875  577777

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.71  E-value=0.62  Score=50.98  Aligned_cols=206  Identities=15%  Similarity=0.195  Sum_probs=117.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEE-eeeccccc------ccccCCcEE
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMK-WLSVDRKK------KRKLGSSLL   89 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~------~~~~~~~~l   89 (579)
                      +..+..++.++.|.-.|..+|+.+..+..........        .+  ..+.-+. |.......      ........+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~--------~~--~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV  263 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR--------QH--QTCRGVSYYDAPAAAAGPAAPAAPADCARRI  263 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc--------cc--ccccceEEecCCcccccccccccccccCCEE
Confidence            4567778888999999999999998886432211000        00  0000111 11100000      000115578


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCcEEEE
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVS-------------AISFAT--HGSCIYSAGA----------DGMVCEI  144 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~~--~~~~l~s~~~----------dg~v~iw  144 (579)
                      ++++.|+.+.-.|..+|+....+-  ..+.|.             .+.-.|  .+..++.|+.          +|.|+-+
T Consensus       264 ~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       264 ILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            999999999999999999987652  222211             111112  2345666642          6889999


Q ss_pred             eCCCCceeeEeecC---------CC--------Ce-eEEEEccCCCEEEEEC--------------------CeEEEEEC
Q 008058          145 DPLTGSLLGKFRAS---------TK--------GI-SCMAVSSDGKMLATAA--------------------GQLKTFNC  186 (579)
Q Consensus       145 d~~~~~~~~~~~~~---------~~--------~v-~~l~~~p~g~~l~~~~--------------------g~i~vwd~  186 (579)
                      |.++|+.+..+..-         .+        .+ ..++++|+..+++.+.                    +.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            99999988776521         00        11 2344555444444321                    45777788


Q ss_pred             CCCeeeEEeecCCCC---------EEEEEEec-CCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          187 SDHKKMQKFSGHPGA---------VRFMTFSD-NGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       187 ~~~~~~~~~~~h~~~---------v~~l~~~~-~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ++|+..-.++.....         ..-+.+.. +|+   .++.++ .+|.+++.|-++++..
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPI  482 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEE
Confidence            889887766531111         11223332 553   555554 7999999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.62  E-value=0.14  Score=40.49  Aligned_cols=99  Identities=15%  Similarity=0.287  Sum_probs=62.1

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE
Q 008058          120 VSAISFAT---HG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       120 V~~l~~~~---~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~  194 (579)
                      |+++++..   || +.|+.|+.|..|++|+  ....+..+.. ...|++++-...+++.+.-. |+|-+|+-.  +.+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence            56666654   43 4599999999999998  3466677764 45788888777655444333 999999753  23333


Q ss_pred             eecCCCCEEEEEEec-C--C-CEEEEEecCCCeEE
Q 008058          195 FSGHPGAVRFMTFSD-N--G-KYVLSSAVGERYIA  225 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~-~--~-~~l~s~s~~d~~i~  225 (579)
                      .+. +..+.++.+.. +  | +.|+++- .+|.|-
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~Gw-snGkve  109 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGW-SNGKVE  109 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence            332 23366665543 2  2 2566665 477664

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.39  E-value=0.84  Score=42.46  Aligned_cols=170  Identities=16%  Similarity=0.110  Sum_probs=94.4

Q ss_pred             EEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCEEEEEC--CeEEE
Q 008058          109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKMLATAA--GQLKT  183 (579)
Q Consensus       109 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~l~~~~--g~i~v  183 (579)
                      +.++......-..++.|..+|..+-+.+.-|  .|+.+|+.+|+......-... .-..++...| ++....=  +...+
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~  114 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFV  114 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEE
Confidence            3344323334567888878888888888766  799999999987766543332 2234455433 2222222  89999


Q ss_pred             EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058          184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      ||..+.+.+.++.- .+.=..++  .+++.|+.+. +...++.+|..+-+......+.....+...++-+-+      -+
T Consensus       115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~------i~  184 (264)
T PF05096_consen  115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY------IN  184 (264)
T ss_dssp             EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE------ET
T ss_pred             EccccceEEEEEec-CCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE------Ec
Confidence            99999999988863 34445666  5566666654 567899999877654321111111111112222222      14


Q ss_pred             CcEEEEEEcCCeEEEEECCCceeecc
Q 008058          264 GLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       264 ~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      |...|-.=....|..-|..+|+....
T Consensus       185 G~IyANVW~td~I~~Idp~tG~V~~~  210 (264)
T PF05096_consen  185 GKIYANVWQTDRIVRIDPETGKVVGW  210 (264)
T ss_dssp             TEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred             CEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence            55444444466777777777766543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.38  E-value=2  Score=46.74  Aligned_cols=240  Identities=13%  Similarity=0.134  Sum_probs=120.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEE--ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSGDARIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      +..+|--|+.||.++..||.+.-|  |..+|.....-+                 .+++.....+.-+...        +
T Consensus       587 l~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk-----------------~~lGt~P~~Lr~f~sk--------~  641 (1096)
T KOG1897|consen  587 LLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK-----------------VTLGTQPISLRTFSSK--------S  641 (1096)
T ss_pred             eeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc-----------------cccCCCCcEEEEEeeC--------C
Confidence            555677778899999999988765  444554321111                 1112111111111111        3


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-EEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCC
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-ISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKG  161 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~  161 (579)
                      ..-+.+.+|.-..+|.-...-+..-+.   -..+.. +.|+.+  +..++++. .+.+++.-+..-+  .++++.- ...
T Consensus       642 ~t~vfa~sdrP~viY~~n~kLv~spls---~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~  716 (1096)
T KOG1897|consen  642 RTAVFALSDRPTVIYSSNGKLVYSPLS---LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GES  716 (1096)
T ss_pred             ceEEEEeCCCCEEEEecCCcEEEeccc---hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCC
Confidence            334555555555555543322221110   011111 123222  23455553 4456666554332  2334332 235


Q ss_pred             eeEEEEccCCCEEEEEC----------------CeEEEEECCCCeeeEEee--cC--CCCEEEEEEecC-CCEEEEEec-
Q 008058          162 ISCMAVSSDGKMLATAA----------------GQLKTFNCSDHKKMQKFS--GH--PGAVRFMTFSDN-GKYVLSSAV-  219 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~----------------g~i~vwd~~~~~~~~~~~--~h--~~~v~~l~~~~~-~~~l~s~s~-  219 (579)
                      ...+++.+....+.+.+                ..++++|-.+.+.+...+  ..  ...+.++.|..| +.+++.|.. 
T Consensus       717 prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~  796 (1096)
T KOG1897|consen  717 PRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGL  796 (1096)
T ss_pred             hhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEe
Confidence            56777776444444432                246777766655443221  11  123555668877 667777653 


Q ss_pred             --------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          220 --------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                              ..|.|.++.+...+..  +.+....-.+.+.....|       +|+++|+-+  ..|++|++.+.+.++.
T Consensus       797 v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v~Gav~aL~~f-------ngkllA~In--~~vrLye~t~~~eLr~  863 (1096)
T KOG1897|consen  797 VYPDENEPVNGRIIVFEFEELNSL--ELVAETVVKGAVYALVEF-------NGKLLAGIN--QSVRLYEWTTERELRI  863 (1096)
T ss_pred             eccCCCCcccceEEEEEEecCCce--eeeeeeeeccceeehhhh-------CCeEEEecC--cEEEEEEccccceehh
Confidence                    2467777777763322  233334444555555555       577776554  5899999988866654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.25  E-value=1.2  Score=44.29  Aligned_cols=193  Identities=12%  Similarity=0.075  Sum_probs=94.3

Q ss_pred             CcEEEE-EECCCeEEEEEccCC----eEEEEecC--CC----CCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCC
Q 008058           86 SSLLVL-GTGGGDVLALAVSAG----QLKWRLSD--CH----PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~-~~~~g~i~iwd~~~~----~~~~~~~~--~h----~~~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~  148 (579)
                      .++|++ |-.++.|+|.|+.+.    ++.+.+..  -+    -.....+.--|+|+.++++-      .-|-+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            344555 447788999999853    33333211  01    11223344457898888863      234688889887


Q ss_pred             CceeeEeecCCC---CeeEEEEccCCCEEEEEC----------------------CeEEEEECCCCeeeEEeecCC--CC
Q 008058          149 GSLLGKFRASTK---GISCMAVSSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHP--GA  201 (579)
Q Consensus       149 ~~~~~~~~~~~~---~v~~l~~~p~g~~l~~~~----------------------g~i~vwd~~~~~~~~~~~~h~--~~  201 (579)
                      .+....+.....   .-+..-|.|.-+.+++..                      +++.+||+.+.+.++++.--.  ..
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~  246 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM  246 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence            877777765332   345677888888888763                      379999999999999886332  23


Q ss_pred             EEEEEEe--cCCCEEEEEecCCCeEEEEEc-CCCccccceeEEeeecC-----------------ceeeEeEEecCCccc
Q 008058          202 VRFMTFS--DNGKYVLSSAVGERYIALWRT-DGVKKQSASCVLAMEHP-----------------AVFMDCRCIDNGGVD  261 (579)
Q Consensus       202 v~~l~~~--~~~~~l~s~s~~d~~i~vwd~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~  261 (579)
                      ...+.|.  |+..+=++++.-..+|..|-- ..++ -..+.+..+...                 ...++-+..+     
T Consensus       247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-----  320 (461)
T PF05694_consen  247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-----  320 (461)
T ss_dssp             EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred             eEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence            5577776  444443333323455555543 3332 212233333211                 1223444454     


Q ss_pred             CCCcEEEEEEc-CCeEEEEECCCc
Q 008058          262 DAGLYVLAISE-TGVCYIWYGQNI  284 (579)
Q Consensus       262 ~~~~~l~s~~~-dg~i~iwd~~~~  284 (579)
                      .|.++|...+. +|.|+.||+...
T Consensus       321 lDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  321 LDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cCCCEEEEEcccCCcEEEEecCCC
Confidence            78899988876 999999998654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=96.24  E-value=0.27  Score=52.26  Aligned_cols=141  Identities=9%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             CcEEEEEECCC------eEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCcee
Q 008058           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~  152 (579)
                      +.++++|+.++      .+..||+.+++... ...-.  ......+.+  +++.++.||.+     ..+..||+.+++-.
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            45566665442      47889988877642 21111  111222222  56667777755     35778888765422


Q ss_pred             eE--eecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          153 GK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      ..  +...... .+++ .-++++++.|+        +.+..||..+.+-..  .++..... .++ ...++..++.||..
T Consensus       372 ~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCcc
Confidence            11  1111111 1222 23567777765        358899988764322  11111111 122 22355555655521


Q ss_pred             C-------CeEEEEEcCCCc
Q 008058          221 E-------RYIALWRTDGVK  233 (579)
Q Consensus       221 d-------~~i~vwd~~~~~  233 (579)
                      +       ..+.+||..+++
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             CCCCCcccceEEEecCCCCc
Confidence            1       237888887764

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.18  E-value=2.6  Score=45.98  Aligned_cols=131  Identities=11%  Similarity=0.042  Sum_probs=67.5

Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecC--CCE
Q 008058          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDN--GKY  213 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~--~~~  213 (579)
                      .||+++-.  .....|.... .++....+.+...++.++  +.+...++..+. ++...  .....|.|+.++|-  ++.
T Consensus       471 ~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~  546 (1096)
T KOG1897|consen  471 SIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPN  546 (1096)
T ss_pred             cEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCC
Confidence            46777633  2334454333 344444444444555544  455555555444 22222  23467999999974  333


Q ss_pred             ---EEEEecCCCeEEEEEcC-CCccccceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          214 ---VLSSAVGERYIALWRTD-GVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       214 ---l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                         +++.|.++..+.+--.- +....   +...+.  .-+..+-...+.     .|..+|.++..||.+..|.++
T Consensus       547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~---~~~~l~~~~iPRSIl~~~~e-----~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  547 KSRLLAVGLWSDISMILTFLPDLILI---THEQLSGEIIPRSILLTTFE-----GDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             cceEEEEEeecceEEEEEECCCccee---eeeccCCCccchheeeEEee-----ccceEEEEEcCCceEEEEEEE
Confidence               44444577766555433 32211   111111  112223333443     568999999999988776543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.16  E-value=0.17  Score=45.18  Aligned_cols=91  Identities=20%  Similarity=0.277  Sum_probs=64.8

Q ss_pred             eEEeeecccccccccCCcEEEEEECCCeEEEEE--ccCCeE-----EEEecC----CCCCCEEEEEEccCCCEEEEEeCC
Q 008058           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA--VSAGQL-----KWRLSD----CHPGGVSAISFATHGSCIYSAGAD  138 (579)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd--~~~~~~-----~~~~~~----~h~~~V~~l~~~~~~~~l~s~~~d  138 (579)
                      .++|....        ..+.++-+.+.+|.-||  ..+|..     +..+.+    +|. ..-+++...+|+..+++-..
T Consensus       162 gl~Wd~d~--------K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng  232 (310)
T KOG4499|consen  162 GLAWDSDA--------KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNG  232 (310)
T ss_pred             cccccccC--------cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecC
Confidence            46676432        45667777888898888  556543     222222    111 12345556688888888899


Q ss_pred             CcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      ++|...|+.+|+.+.+++-....|+|++|--
T Consensus       233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            9999999999999999998888999999963

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.08  E-value=0.23  Score=52.35  Aligned_cols=98  Identities=16%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             EEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCC---------CceeeEe-
Q 008058           89 LVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLT---------GSLLGKF-  155 (579)
Q Consensus        89 l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~-  155 (579)
                      +++...+ ..+.|||...+....+-.-...+.|.++.|.  |+|+.+++.|-...|.+|....         ...++.+ 
T Consensus        43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~  122 (631)
T PF12234_consen   43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID  122 (631)
T ss_pred             EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence            3444444 4599999999886544333457899999985  6899999999999999986421         1233332 


Q ss_pred             -ecCC-CCeeEEEEccCCCEEEEECCeEEEEEC
Q 008058          156 -RAST-KGISCMAVSSDGKMLATAAGQLKTFNC  186 (579)
Q Consensus       156 -~~~~-~~v~~l~~~p~g~~l~~~~g~i~vwd~  186 (579)
                       ..+. .+|....|.++|.+++.+++.+.|+|-
T Consensus       123 i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk  155 (631)
T PF12234_consen  123 ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK  155 (631)
T ss_pred             eecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence             3344 488999999999999888899999974

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.05  E-value=0.5  Score=42.23  Aligned_cols=137  Identities=12%  Similarity=0.201  Sum_probs=82.2

Q ss_pred             cEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCC---C---cEEEE---eCC--CCceee
Q 008058           87 SLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGAD---G---MVCEI---DPL--TGSLLG  153 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d---g---~v~iw---d~~--~~~~~~  153 (579)
                      +.|+++...+.|.+|++.+..  ...++  ..-+.|..+.++..|+++++-=.+   .   .+|+|   ...  ..++++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            667777888999999998443  34444  244889999999999999986322   2   55664   222  112221


Q ss_pred             -Eeec---------------------CCCCeeEEEEcc-CCCEEEEECCeEEEEECCCCee-e-----EEee-----cCC
Q 008058          154 -KFRA---------------------STKGISCMAVSS-DGKMLATAAGQLKTFNCSDHKK-M-----QKFS-----GHP  199 (579)
Q Consensus       154 -~~~~---------------------~~~~v~~l~~~p-~g~~l~~~~g~i~vwd~~~~~~-~-----~~~~-----~h~  199 (579)
                       .+-+                     -..++.+++..| .|++++...+.+.+|.+..... .     ..|.     -|.
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~  186 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID  186 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence             1111                     123667888877 5666666669999998764322 1     1121     111


Q ss_pred             C-CEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          200 G-AVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       200 ~-~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      + ....+++.  +.|++..+  +..+++..+
T Consensus       187 ~~~p~~v~ic--~~yiA~~s--~~ev~Vlkl  213 (215)
T PF14761_consen  187 NFKPTQVAIC--EGYIAVMS--DLEVLVLKL  213 (215)
T ss_pred             CceEEEEEEE--eeEEEEec--CCEEEEEEE
Confidence            1 24455555  45777664  667777654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.04  E-value=1.5  Score=42.13  Aligned_cols=153  Identities=16%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECC-CCeee
Q 008058          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCS-DHKKM  192 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~-~~~~~  192 (579)
                      +-.+.+..+..++||++++++..-....-||.-...-...-+.....|.+|.|.|++.+...+. |.|+.=+.. .....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccc
Confidence            3456789999999999888875555556787532211222223456999999999998877766 788887722 22211


Q ss_pred             EE----eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee-ecCceeeEeEEecCCcccCCCcEE
Q 008058          193 QK----FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       193 ~~----~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                      ..    +....-.+..++|.+++...++++  .|.+ +...+.++.-.  ..... .-+.....+.++.     |  ..-
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg--~G~l-~~S~DgGktW~--~~~~~~~~~~n~~~i~f~~-----~--~~g  289 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGG--SGTL-LVSTDGGKTWQ--KDRVGENVPSNLYRIVFVN-----P--DKG  289 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEES--TT-E-EEESSTTSS-E--E-GGGTTSSS---EEEEEE-----T--TEE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeC--CccE-EEeCCCCccce--ECccccCCCCceEEEEEcC-----C--Cce
Confidence            11    111223378899999888777664  5643 44555554221  11111 1233445555554     3  455


Q ss_pred             EEEEcCCeEEEE
Q 008058          268 LAISETGVCYIW  279 (579)
Q Consensus       268 ~s~~~dg~i~iw  279 (579)
                      .+.+.+|.|.-|
T Consensus       290 f~lG~~G~ll~~  301 (302)
T PF14870_consen  290 FVLGQDGVLLRY  301 (302)
T ss_dssp             EEE-STTEEEEE
T ss_pred             EEECCCcEEEEe
Confidence            566788887665

>PHA02713 hypothetical protein; Provisional

Probab=95.85  E-value=0.31  Score=51.80  Aligned_cols=141  Identities=9%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC--------------------
Q 008058           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG--------------------  139 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg--------------------  139 (579)
                      +.+.++|+.++     ++..||+.+++....-. .........+.+  +|+..+.|+.++                    
T Consensus       352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~  429 (557)
T PHA02713        352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH  429 (557)
T ss_pred             CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence            56667777654     38899999876542111 001111112222  576667776542                    


Q ss_pred             ---cEEEEeCCCCcee--eEeecCCCCeeEEEEccCCCEEEEEC--C------eEEEEECCC-Ce--eeEEeecCCCCEE
Q 008058          140 ---MVCEIDPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--G------QLKTFNCSD-HK--KMQKFSGHPGAVR  203 (579)
Q Consensus       140 ---~v~iwd~~~~~~~--~~~~~~~~~v~~l~~~p~g~~l~~~~--g------~i~vwd~~~-~~--~~~~~~~h~~~v~  203 (579)
                         .+..||+.+.+-.  ..+....... +++ .-+|++.+.|+  +      .+..||..+ .+  .+..++.......
T Consensus       430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence               4778888765422  1121111111 222 23577777775  1      367899887 43  2333332222222


Q ss_pred             EEEEecCCCEEEEEecCCC--eEEEEEcCCCc
Q 008058          204 FMTFSDNGKYVLSSAVGER--YIALWRTDGVK  233 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~  233 (579)
                      .+.+  +|+..++|| .|+  .+..||..+.+
T Consensus       508 ~~~~--~~~iyv~Gg-~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        508 TILH--DNTIMMLHC-YESYMLQDTFNVYTYE  536 (557)
T ss_pred             eEEE--CCEEEEEee-ecceeehhhcCccccc
Confidence            2222  566777776 577  67777777765

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=1.5  Score=41.09  Aligned_cols=156  Identities=11%  Similarity=0.044  Sum_probs=101.2

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      .+.+.|+|.         .+.|++......-.++=..+|+.+.++.-.--...-.+.+..+|++.++--.++.++++.+.
T Consensus        88 vS~LTynp~---------~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          88 VSSLTYNPD---------TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccceeeCCC---------cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            566777765         56678888888877887788888776643223445677888888887777788888888776


Q ss_pred             CCceeeE----------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe-e--eEEeecC-------CCCEEEE
Q 008058          148 TGSLLGK----------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK-K--MQKFSGH-------PGAVRFM  205 (579)
Q Consensus       148 ~~~~~~~----------~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~-~--~~~~~~h-------~~~v~~l  205 (579)
                      ....+..          ....+.....++|+|..+.|..+-  +-+.||.+.... .  +.....+       -..|+++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            5422211          111245788999999888888876  545555443221 1  1111111       2347788


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          206 TFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .|++....+++-|.+++.+.-.|....
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCCC
Confidence            898766666666667888888777654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.78  E-value=0.64  Score=49.39  Aligned_cols=184  Identities=13%  Similarity=0.084  Sum_probs=99.0

Q ss_pred             CcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceee
Q 008058           86 SSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~  153 (579)
                      +.++++|+..+      .+..||+.++....-....+...-.++++. +|...++||.|      .++..||..+++-..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            56777777774      388999999865432222222333444444 45677888888      357888987765222


Q ss_pred             --EeecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCCCCEEEEEE-ecCCCEEEEEecCCC-
Q 008058          154 --KFRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHPGAVRFMTF-SDNGKYVLSSAVGER-  222 (579)
Q Consensus       154 --~~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~-~~~~~~l~s~s~~d~-  222 (579)
                        .+....... +++. -+|.+.++|+       .++..||..+.+--..-+ ......+... .-+|...+++| .++ 
T Consensus       364 ~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG-~~~~  439 (571)
T KOG4441|consen  364 VAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGG-GDGS  439 (571)
T ss_pred             cCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcC-cCCC
Confidence              111111111 1121 2678888887       368899988764321111 1112222222 23566666665 343 


Q ss_pred             -----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058          223 -----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       223 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  284 (579)
                           ++..||..+++-.   ....+........+..       -++...+.|+.||     ++..||..+.
T Consensus       440 ~~~l~sve~YDP~t~~W~---~~~~M~~~R~~~g~a~-------~~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWT---LIAPMNTRRSGFGVAV-------LNGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             ccccceEEEEcCCCCcee---ecCCcccccccceEEE-------ECCEEEEECCccCCCccceEEEEcCCCC
Confidence                 5778888776532   2222222222222232       2667778888776     2566765544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.65  E-value=0.063  Score=58.14  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCce-eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE
Q 008058          128 HGSCIYSAGADGMVCEIDPLTGSL-LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (579)
Q Consensus       128 ~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~  204 (579)
                      .+..++.|++.|.|-..|+...-. ...=..-.++|++++|+.+|+.++.|-  |.|.+||+..++.++.+..|..+.++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            455788899999999988754311 111112345999999999999999987  89999999999999988888777666


Q ss_pred             EEE---ecCCCEEEEEecCCCeEEEEEcC
Q 008058          205 MTF---SDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       205 l~~---~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      +-+   ..++..++++ +.-|  .+|.+.
T Consensus       178 vi~v~~t~~nS~llt~-D~~G--sf~~lv  203 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTS-DTGG--SFWKLV  203 (1206)
T ss_pred             EEEEEEeCCCcEEEEc-cCCC--ceEEEE
Confidence            543   4455545543 2344  367653

>PHA02790 Kelch-like protein; Provisional

Probab=95.61  E-value=1.1  Score=46.85  Aligned_cols=179  Identities=5%  Similarity=-0.117  Sum_probs=85.7

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceee--Ee
Q 008058           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLG--KF  155 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~--~~  155 (579)
                      +.++++|+.++     .+..||+.+++........ .......+.  -+|...+.|+.+  ..+..||..+++-..  .+
T Consensus       272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            44556666543     4778999887754221111 111112222  356666667653  458889876553221  11


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          156 RASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ....... ++ ..-+|++.+.|+     ..+..||.++.+-...  +...... .++ ..-+++..+.||    .+.+||
T Consensus       350 ~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG----~~e~yd  421 (480)
T PHA02790        350 LKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR----NAEFYC  421 (480)
T ss_pred             CCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC----ceEEec
Confidence            1111111 22 223677777776     3577888876643221  1111111 122 223455444443    467788


Q ss_pred             cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  284 (579)
                      ..+++-.   .+..+..+.....++.       -+|+..+.|+.+     ..+..||..+.
T Consensus       422 p~~~~W~---~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSNTWT---LIDDPIYPRDNPELII-------VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCcEe---EcCCCCCCccccEEEE-------ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            8765422   2222222222223333       256777777654     24666665543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.47  E-value=0.035  Score=49.44  Aligned_cols=140  Identities=14%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEE-
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCM-  165 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l-  165 (579)
                      .+..-+.+|.|.-+++...+...+....|...-.-   -.-+..+++|+.+|.|++|..... .....+..-...|.++ 
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV---VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceee---cccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            35556677777777776544322222223333111   123556899999999999987521 1111111112233332 


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEecCCCEEEEE--ecCCCeEEEEEcCC
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSDNGKYVLSS--AVGERYIALWRTDG  231 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~--s~~d~~i~vwd~~~  231 (579)
                      .-..++.+..++.  |.|+.|++.-++.+.....|. .++.....+..++++.++  | .|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S-~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTS-HDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccc-cchhhhhcchhh
Confidence            2223444555555  899999998887776666666 444444444444444444  3 355555555544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.44  E-value=0.041  Score=36.11  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~   39 (579)
                      ++|  -+++|+|..++||.|+.||.|.|+.+ +++.
T Consensus        12 ~~v--~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRV--SCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcE--EEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456  46699999999999999999999998 5543

>PHA03098 kelch-like protein; Provisional

Probab=95.42  E-value=1  Score=47.93  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~  154 (579)
                      +.+.+.|+.+     .++..||+.+++....-...+...-.+++ .-+++..+.||.+      ..+..||+.+++-...
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            5666777654     34888998887653211101111011112 1256666666632      4588899876542211


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC-C---------eEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          155 --FRASTKGISCMAVSSDGKMLATAA-G---------QLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~-g---------~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                        +...... .++ ...++.+++.|+ .         .+.+||..+++-..  .+.........+.  -+++.++.+|..
T Consensus       422 ~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCc
Confidence              1111111 122 223566777765 1         38889988765322  1111111111122  256666666532


Q ss_pred             ----CCeEEEEEcCCCc
Q 008058          221 ----ERYIALWRTDGVK  233 (579)
Q Consensus       221 ----d~~i~vwd~~~~~  233 (579)
                          .+.+.+||..+.+
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence                2357777776653

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.24  E-value=0.078  Score=34.78  Aligned_cols=35  Identities=23%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~  151 (579)
                      ....|..++|+|....++.++.+|.|.++.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            3467999999999999999999999999998 5554

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.22  E-value=0.42  Score=47.74  Aligned_cols=153  Identities=12%  Similarity=0.089  Sum_probs=94.5

Q ss_pred             EEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      -...|..++. .|+....++=.|++.|+.+.++..+...  .+.|.|.+.-....                    ...-+
T Consensus       474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt--------------------~eqtl  531 (776)
T COG5167         474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMT--------------------DEQTL  531 (776)
T ss_pred             eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcC--------------------ccceE
Confidence            3445555554 4555567777789999999888766554  33444441111100                    23346


Q ss_pred             EEECCCeEEEEEccCCe-EEE--EecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE
Q 008058           91 LGTGGGDVLALAVSAGQ-LKW--RLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~-~~~--~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +|-++..|.-.|++-.. .+.  +... .......+..-. ...+++.++..|.|++||--.-+....+.+-...|..+.
T Consensus       532 vGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id  610 (776)
T COG5167         532 VGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID  610 (776)
T ss_pred             EeecccceEEecccccCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE
Confidence            77777777777776322 111  1100 001112222222 455899999999999999543344444677777999999


Q ss_pred             EccCCCEEEEEC-CeEEEEECC
Q 008058          167 VSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       167 ~~p~g~~l~~~~-g~i~vwd~~  187 (579)
                      .+.+|+++++.+ ..+.+-|++
T Consensus       611 vta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         611 VTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eecCCcEEEEeecceEEEEecc
Confidence            999999988887 888888875

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.10  E-value=2.2  Score=40.02  Aligned_cols=118  Identities=7%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~  190 (579)
                      .+-...|.++.|+|+.+.|++......-.++=-.+|+.++++.-.. .....|.+..+|++.++--  +.++++.+....
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            3445569999999999999888877777777667899988865321 2345678877766666655  788888776542


Q ss_pred             eeE-----Ee----ecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          191 KMQ-----KF----SGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       191 ~~~-----~~----~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .+.     .+    ..+ +...-.++|.|....|+.+= +-+-+.||.+...
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~  212 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQS  212 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecC
Confidence            221     11    112 44567899999888887764 5566777766543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=0.09  Score=46.90  Aligned_cols=102  Identities=18%  Similarity=0.165  Sum_probs=60.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~  163 (579)
                      +.-++.|+.+|.|.+|+.............-...| ..+.--.++.+..+++.||.|+.|++.-++.+...-.|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            56699999999999998873221111111111222 223333355678889999999999998887776666565 3444


Q ss_pred             EEEEccCCCEEEEE--C--CeEEEEECC
Q 008058          164 CMAVSSDGKMLATA--A--GQLKTFNCS  187 (579)
Q Consensus       164 ~l~~~p~g~~l~~~--~--g~i~vwd~~  187 (579)
                      ....+..++.++++  +  ..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444444444  2  345555553

>PHA02790 Kelch-like protein; Provisional

Probab=94.93  E-value=2.1  Score=44.67  Aligned_cols=140  Identities=10%  Similarity=-0.043  Sum_probs=66.8

Q ss_pred             CcEEEEEECC--CeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeE--eec
Q 008058           86 SSLLVLGTGG--GDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGK--FRA  157 (579)
Q Consensus        86 ~~~l~~~~~~--g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~--~~~  157 (579)
                      +.+.++|+.+  ..+..||+.+++......-.+ ......+.  -+|+..+.||.++   .+..||..+.+-...  +..
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            5556666643  348889988776532111111 11112222  2676667776543   477888876532211  111


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCC-----CeEEEEEcC
Q 008058          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGE-----RYIALWRTD  230 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-----~~i~vwd~~  230 (579)
                      .... .+++ .-+|++.+.| |.+.+||.++++-.  ..+....... +++. -+|+..+.||. +     ..+..||..
T Consensus       397 ~r~~-~~~~-~~~~~IYv~G-G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~-~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        397 PHYK-SCAL-VFGRRLFLVG-RNAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGF-YRGSYIDTIEVYNNR  470 (480)
T ss_pred             cccc-ceEE-EECCEEEEEC-CceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCc-CCCcccceEEEEECC
Confidence            1111 1222 2345555544 56778988776432  2222111111 2222 35666666652 3     246666665


Q ss_pred             CCc
Q 008058          231 GVK  233 (579)
Q Consensus       231 ~~~  233 (579)
                      +++
T Consensus       471 ~~~  473 (480)
T PHA02790        471 TYS  473 (480)
T ss_pred             CCe
Confidence            543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.91  E-value=3.8  Score=39.44  Aligned_cols=138  Identities=12%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-CCCceeeE----eecCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-LTGSLLGK----FRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~-~~~~~~~~----~~~~~~  160 (579)
                      +.+++++....-..-||.-.......- ..-...|..+.|.|++...+.+ ..|.|+.=+. ...+....    +....-
T Consensus       156 G~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  156 GRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             S-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S
T ss_pred             CcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCce
Confidence            666666655555667876543322122 2345789999999998765544 8888888772 22222111    111223


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .+..++|.+++...++|++-..+.....|+.-..-.   .-......|.|.++.+-++.+  .+|.+--|
T Consensus       234 ~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG--~~G~ll~~  301 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG--QDGVLLRY  301 (302)
T ss_dssp             -EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred             eeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC--CCcEEEEe
Confidence            588999999999999888333444556666544432   234568889998776666664  58877655

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.91  E-value=3.7  Score=41.23  Aligned_cols=202  Identities=18%  Similarity=0.188  Sum_probs=110.9

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~  163 (579)
                      ...+++++.+|.|.-.|..++..++...... ...+.+-.+..+|+ ++.++.+|.++.+|..+|+.+..+.... ..+.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            5567888999999999999999776543222 12333333333665 7788899999999998999988877655 1222


Q ss_pred             EEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCC---CCEEEEEEecCCCEEEEEecC--CCeEEEEEcCCCccccc
Q 008058          164 CMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHP---GAVRFMTFSDNGKYVLSSAVG--ERYIALWRTDGVKKQSA  237 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~l~s~s~~--d~~i~vwd~~~~~~~~~  237 (579)
                      .-.+-.++..++... +.+.-.|..+++..-....-.   ..+..--...++ .++.+. .  ++.+.-.|...+...-.
T Consensus       147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~-~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGS-DGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEec-CCCcceEEEEEccCCcEeee
Confidence            223333555555534 888888888887765543211   111110112233 333333 3  44566666666653310


Q ss_pred             e-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          238 S-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       238 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      . ........... ....+....+ -.+.-+..++.+|.+.-.|..+++.+.....
T Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         225 QKVSQTIGRTAIS-TTPAVDGGPV-YVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             eeeecccCccccc-ccccccCceE-EECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            0 00111111000 0011100000 0122346677788899999999988866544

>PRK13684 Ycf48-like protein; Provisional

Probab=94.86  E-value=4.4  Score=39.97  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEE-eCCCCceeeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008058          117 PGGVSAISFATHGSCIYSAGADGMVCEI-DPLTGSLLGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iw-d~~~~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~  193 (579)
                      ...+.++.+.|++.+++++ ..|.+..- | ..++...... .....++++.+.|+++.++++. |.+.+=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            4568899999988666554 56655432 2 2223222222 2334789999999999888888 665432334443322


Q ss_pred             EeecC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEe-eecCceeeEeEEecCCcccCCCcEEE
Q 008058          194 KFSGH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       194 ~~~~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      ....+    ...+..+.+.|+++.+++ + .+|.+. .....++.-  ..... ...+......+..      .+ ...+
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~-G-~~G~v~-~S~d~G~tW--~~~~~~~~~~~~~~~~~~~------~~-~~~~  317 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAG-G-GNGTLL-VSKDGGKTW--EKDPVGEEVPSNFYKIVFL------DP-EKGF  317 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEE-c-CCCeEE-EeCCCCCCC--eECCcCCCCCcceEEEEEe------CC-CceE
Confidence            22111    234778899998876554 4 477554 444444322  11110 0111223333433      23 3445


Q ss_pred             EEEcCCeEEEEEC
Q 008058          269 AISETGVCYIWYG  281 (579)
Q Consensus       269 s~~~dg~i~iwd~  281 (579)
                      ..+..|.|-.|+-
T Consensus       318 ~~G~~G~il~~~~  330 (334)
T PRK13684        318 VLGQRGVLLRYVG  330 (334)
T ss_pred             EECCCceEEEecC
Confidence            6677788887763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.77  E-value=1.2  Score=45.66  Aligned_cols=145  Identities=11%  Similarity=0.167  Sum_probs=86.8

Q ss_pred             CCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC-----CEEEEEC-CeEEEEECC-
Q 008058          118 GGVSAISFATHGSCIYSAG---ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG-----KMLATAA-GQLKTFNCS-  187 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g-----~~l~~~~-g~i~vwd~~-  187 (579)
                      -+|.+++|. ||+.++-..   .+|.+++=|   .+.+..|    ..|..+.|.|-+     .+||+-. ..|.||.+. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            368899996 566544332   234443322   1233333    367889999843     4666666 899999886 


Q ss_pred             ----CCeeeEEeecCC---CC--EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058          188 ----DHKKMQKFSGHP---GA--VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       188 ----~~~~~~~~~~h~---~~--v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                          .++.+..-..+-   -+  -..+.|+|....|+.-.. ...-.+++++.....   ....+ .....+.|.+|.  
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-~dvSV~~sV~~d~sr---VkaDi-~~~G~IhCACWT--  164 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-RDVSVLPSVHCDSSR---VKADI-KTSGLIHCACWT--  164 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-CceeEeeeeeeCCce---EEEec-cCCceEEEEEec--
Confidence                233333322221   11  246789999988877663 333345566554322   22223 556678899998  


Q ss_pred             cccCCCcEEEEEEcC-CeEEEEE
Q 008058          259 GVDDAGLYVLAISET-GVCYIWY  280 (579)
Q Consensus       259 ~~~~~~~~l~s~~~d-g~i~iwd  280 (579)
                         +||++|+++-.. =.-++||
T Consensus       165 ---~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  165 ---KDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             ---CcCCEEEEEeCCeEEEEEec
Confidence               899888776443 3567887

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.60  E-value=2.4  Score=37.53  Aligned_cols=172  Identities=13%  Similarity=0.099  Sum_probs=96.8

Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058           16 ALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        16 dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      +|.++.+.+.  ...|++||+.+|+.+.+-+-..    ...|..         ..+  .           .+..+-...-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~----~~~FgE---------Git--~-----------~gd~~y~LTw  108 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP----DTVFGE---------GIT--K-----------LGDYFYQLTW  108 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCC----cccccc---------cee--e-----------ccceEEEEEe
Confidence            3445555443  4579999999999876554211    111111         111  0           0134456666


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC--C---CCeeEEEEc
Q 008058           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS--T---KGISCMAVS  168 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~---~~v~~l~~~  168 (579)
                      .+|.-..||..+-+++.++.  ..+.=++++.  |++.|+.++...+++.-|.++.....++...  .   ..++.+.|-
T Consensus       109 ~egvaf~~d~~t~~~lg~~~--y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         109 KEGVAFKYDADTLEELGRFS--YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             ccceeEEEChHHhhhhcccc--cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            78888999999887765553  2233455554  6666877777778888887765544433211  1   123344443


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEe------------ecCCCCEEEEEEecCCCEEEEEe
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKF------------SGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~------------~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                       +|...|-.=  ..|...|..+|+.+..+            ..|..-.+.|++.|++..++..|
T Consensus       185 -dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 -DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             -ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence             454444332  45555556666554433            23445677899999875555544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.38  E-value=4.6  Score=38.03  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             CcEEEEEECCCeEEEEE-ccCCeEEE-Eec-CCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCC---CC------c
Q 008058           86 SSLLVLGTGGGDVLALA-VSAGQLKW-RLS-DCHPGGVSAISFATHGSCIYSAG---ADGMVCEIDPL---TG------S  150 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd-~~~~~~~~-~~~-~~h~~~V~~l~~~~~~~~l~s~~---~dg~v~iwd~~---~~------~  150 (579)
                      +...++...+....++. ...+.... .+. ..-...|+.+.++|||..++...   .++.|.+--+.   .+      .
T Consensus        77 g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~  156 (253)
T PF10647_consen   77 GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTG  156 (253)
T ss_pred             CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceecc
Confidence            44455555555555553 33333211 111 11112899999999999877665   35677766443   22      1


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058          151 LLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      ...........+..++|.+++.+++.+.
T Consensus       157 ~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  157 PRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ceEecccccCcceeeeecCCCEEEEEeC
Confidence            1112222345889999999999888876

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.25  E-value=5  Score=37.96  Aligned_cols=212  Identities=13%  Similarity=0.145  Sum_probs=112.1

Q ss_pred             ccceEEEEccCCCEEEEEeCCCcEEEEECCC------C-eEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            6 IRDILTSFSPALDYFAICSGDARIKIWDTLK------G-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         6 V~~~~~~fs~dg~~las~s~dg~i~vwd~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ++.+=++|+|.+.+-++....+...+||...      . .++-.+.....             .+.....|-+.|...+.
T Consensus        23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-------------~~~~~~PTGiVfN~~~~   89 (336)
T TIGR03118        23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-------------LAAEGTPTGQVFNGSDT   89 (336)
T ss_pred             cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-------------CCCCCCccEEEEeCCCc
Confidence            3455679999998777766778899999861      1 12222221111             01112233344432210


Q ss_pred             c---cccccCCcEEEEEECCCeEEEEEccCCeE-----EEEecCCCCCCE-EEEEEcc--CCCEEEEEe-CCCcEEEEeC
Q 008058           79 K---KKRKLGSSLLVLGTGGGDVLALAVSAGQL-----KWRLSDCHPGGV-SAISFAT--HGSCIYSAG-ADGMVCEIDP  146 (579)
Q Consensus        79 ~---~~~~~~~~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h~~~V-~~l~~~~--~~~~l~s~~-~dg~v~iwd~  146 (579)
                      -   ...+.....++.++.+|+|.-|...-+..     ...+.....+.| ..+++..  .+.+|+.+. ..++|.+||-
T Consensus        90 F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118        90 FVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             eEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            0   00001145689999999999999753322     112222222444 3556553  356676664 6789999984


Q ss_pred             CCCceeeE---eecC-----CCC-----------eeEEEEccCCCEEEEE-C-CeEEEEECCCCeeeEEee--cCCCCEE
Q 008058          147 LTGSLLGK---FRAS-----TKG-----------ISCMAVSSDGKMLATA-A-GQLKTFNCSDHKKMQKFS--GHPGAVR  203 (579)
Q Consensus       147 ~~~~~~~~---~~~~-----~~~-----------v~~l~~~p~g~~l~~~-~-g~i~vwd~~~~~~~~~~~--~h~~~v~  203 (579)
                      . ...+..   |...     -.+           |+-..-.++++.=+.| + |-|-+||. .++.++.+.  +.-...+
T Consensus       170 ~-f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW  247 (336)
T TIGR03118       170 S-FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW  247 (336)
T ss_pred             c-cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence            3 222211   1111     001           1111112222211112 2 78999997 566777773  2334456


Q ss_pred             EEEEec------CCCEEEEEecCCCeEEEEEcCCCc
Q 008058          204 FMTFSD------NGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       204 ~l~~~~------~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|+..|      .+.. +.+-..||+|..+|..+++
T Consensus       248 G~a~APa~FG~~sg~l-LVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       248 GLAIAPESFGSLSGAL-LVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             eeeeChhhhCCCCCCe-EEeecCCceeEEecCCCCc
Confidence            677755      3444 4555689999999998776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.17  E-value=0.05  Score=57.67  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=74.6

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE-----------EccCCCEEEEE
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS-----------FATHGSCIYSA  135 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~  135 (579)
                      ...-+.|.+.-..      ..++..+..+|.|++.+..+...  .+..+|...+++++           .+|||..|+.+
T Consensus       182 ~~~~V~wcp~~~~------~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a  253 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVN------KVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA  253 (1283)
T ss_pred             Ccceeeecccccc------cceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence            3356778776544      45667777788877766654433  33345766655543           58999999999


Q ss_pred             eCCCcEEEEeCC-----CCceeeEeecCCC-CeeEEEEccCC---------CEEEEEC---CeEEEEECCCCeee
Q 008058          136 GADGMVCEIDPL-----TGSLLGKFRASTK-GISCMAVSSDG---------KMLATAA---GQLKTFNCSDHKKM  192 (579)
Q Consensus       136 ~~dg~v~iwd~~-----~~~~~~~~~~~~~-~v~~l~~~p~g---------~~l~~~~---g~i~vwd~~~~~~~  192 (579)
                      +.||.++.|.+.     .-++...++.|.+ +-.|.-++...         .+++++.   ..+++|.....+++
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            999998888653     3356667777774 33333344322         1344444   57888887766654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=0.28  Score=53.68  Aligned_cols=153  Identities=7%  Similarity=-0.026  Sum_probs=93.7

Q ss_pred             eEEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      +.+...+|+...++...  +-.|..||+++-......+..  +   +.++..  .-.......|+.|.|.-        .
T Consensus       104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~--p---l~~s~t--s~ek~vf~~~~~wnP~v--------p  168 (1405)
T KOG3630|consen  104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV--P---LKNSAT--SFEKPVFQLKNVWNPLV--------P  168 (1405)
T ss_pred             eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc--c---cccccc--hhccccccccccccCCc--------c
Confidence            44477778776655443  336788898754322111000  0   000000  00112344578888765        3


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v  162 (579)
                      ...+++..|+.|++..+..-...... ..-...+++++|+|.|+.++.|-..|++.-|-. +++....+.+.    ...|
T Consensus       169 ~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrv  246 (1405)
T KOG3630|consen  169 LNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRV  246 (1405)
T ss_pred             chhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcce
Confidence            44688889999988877543322122 124567899999999999999999999999885 34444443322    3589


Q ss_pred             eEEEEccCCCEEEEEC
Q 008058          163 SCMAVSSDGKMLATAA  178 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~  178 (579)
                      .+|+|-....++++-+
T Consensus       247 l~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  247 LSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             eEEEEecceeEEEEec
Confidence            9999988777777654

>PRK10115 protease 2; Provisional

Probab=93.99  E-value=12  Score=41.16  Aligned_cols=188  Identities=9%  Similarity=0.049  Sum_probs=94.3

Q ss_pred             EEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058           11 TSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      +.+||||++||.+..     ..+|++-|+.+|..+...-                   .... ..+.|.+.+        
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------------------~~~~-~~~~w~~D~--------  183 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------------------DNVE-PSFVWANDS--------  183 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------------------cCcc-eEEEEeeCC--------
Confidence            478999999887643     2357888887775321100                   0111 246776542        


Q ss_pred             CcEEEEEECC-----CeEEEEEccCC--eEEEEecCCCCCCEE-EEEEccCCCEEEEEe---CCCcEEEEeCC--CCcee
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAG--QLKWRLSDCHPGGVS-AISFATHGSCIYSAG---ADGMVCEIDPL--TGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~--~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~---~dg~v~iwd~~--~~~~~  152 (579)
                      ..++++...+     ..|+.+++.++  +-. .+..+...... ....+.++++++..+   .++.+.+++..  ++...
T Consensus       184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~  262 (686)
T PRK10115        184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPF  262 (686)
T ss_pred             CEEEEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCce
Confidence            2333443322     35888998887  222 12222223333 334454888765543   34578888842  34322


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecC-C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGH-P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h-~-~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      ..+....+....+. +..+.+++...     ..|...++........+..+ . ..+..+.+.  +.+|+.....++.-+
T Consensus       263 ~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~  339 (686)
T PRK10115        263 VFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTS  339 (686)
T ss_pred             EEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEE
Confidence            22222222223322 33344444433     24554555522222334344 3 367778877  345555555677666


Q ss_pred             EEEcC
Q 008058          226 LWRTD  230 (579)
Q Consensus       226 vwd~~  230 (579)
                      ++-+.
T Consensus       340 l~~~~  344 (686)
T PRK10115        340 LRQIN  344 (686)
T ss_pred             EEEEc
Confidence            65554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.99  E-value=5.5  Score=37.48  Aligned_cols=113  Identities=17%  Similarity=0.158  Sum_probs=69.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEe-CCCCceee-EeecC--CCCeeEEEEccCCCEEEEEC-----CeEEEEECC--
Q 008058          119 GVSAISFATHGSCIYSAGADGMVCEID-PLTGSLLG-KFRAS--TKGISCMAVSSDGKMLATAA-----GQLKTFNCS--  187 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd-~~~~~~~~-~~~~~--~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~--  187 (579)
                      .+..-.|++++...+....+...+++. ..++.... .....  ...|..+.++|||..++...     +.|++--+.  
T Consensus        67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~  146 (253)
T PF10647_consen   67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD  146 (253)
T ss_pred             ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence            678889999977666666666666663 33343221 12211  12899999999999887643     567666443  


Q ss_pred             -CC------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE-EEcCC
Q 008058          188 -DH------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL-WRTDG  231 (579)
Q Consensus       188 -~~------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v-wd~~~  231 (579)
                       .+      ..+.........+..+.|.+++..++.+...+..+.. .....
T Consensus       147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG  198 (253)
T PF10647_consen  147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDG  198 (253)
T ss_pred             CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccC
Confidence             22      1122222335678999999999887777655554444 44433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=3.6  Score=40.87  Aligned_cols=147  Identities=9%  Similarity=0.122  Sum_probs=94.2

Q ss_pred             CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~  159 (579)
                      .+..+.+..+|.+.=|-+...  .....+.....++|.++.|++|++.++.--.+++|.+++....+    ...+.+...
T Consensus        33 aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~  112 (657)
T KOG2377|consen   33 ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKN  112 (657)
T ss_pred             CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCc
Confidence            344566666666666665432  23333333456799999999999999999999999999974332    222334444


Q ss_pred             CCeeEEEEccCCCEEEEECCeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAAGQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~  232 (579)
                      ..|....|+.+....+....-+.+|.+.. .+.++..+.|...|....|.++.+.++-+++ ..+++.=+.++.+
T Consensus       113 ~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  113 ANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             ceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            56889999876444444445566666543 3345556778888999999998876554442 3444444444443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.94  E-value=3.5  Score=44.97  Aligned_cols=35  Identities=9%  Similarity=0.009  Sum_probs=28.7

Q ss_pred             CCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCC
Q 008058          115 CHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus       115 ~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~  149 (579)
                      .+...|..+.|+|.   +.+|+.=..|+++|+||+...
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            35567899999995   578888889999999998654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.66  E-value=3  Score=34.28  Aligned_cols=108  Identities=16%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCC--------ceeeEeecCCCCeeEEEEcc-----CCCEEEEEC-CeEEEEECC
Q 008058          122 AISFATHGSCIYSAGADGMVCEIDPLTG--------SLLGKFRASTKGISCMAVSS-----DGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~l~~~p-----~g~~l~~~~-g~i~vwd~~  187 (579)
                      .-.|......|++++.-|+|.+++....        ..+..+. -...|++++-.+     +...|+.|+ ..+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence            3456555667888889999999987633        2334444 345777876544     456888888 899999998


Q ss_pred             CCeeeEEeecCCCCEEEEEEec----CCCEEEEEecCCCeEEEEEcCCCc
Q 008058          188 DHKKMQKFSGHPGAVRFMTFSD----NGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       188 ~~~~~~~~~~h~~~v~~l~~~~----~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ...-+.. +.-...|+++.+-.    ....++.+  .+..|.-||....+
T Consensus        82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVG--GNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhh-hhCccceeEEEEEecCCCCCcEEEEC--ceEEEEEeCCCCcE
Confidence            7755432 22345677776632    23444444  36777777766544

>PRK10115 protease 2; Provisional

Probab=93.62  E-value=13  Score=40.67  Aligned_cols=98  Identities=8%  Similarity=0.023  Sum_probs=59.9

Q ss_pred             CcEEEEEEC-CCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC--cee
Q 008058           86 SSLLVLGTG-GGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG--SLL  152 (579)
Q Consensus        86 ~~~l~~~~~-~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~--~~~  152 (579)
                      +++|+.+.. +|.    |++.|+.+|..+.....+   .-..++|.+|++.|+.+..+      ..|+.+++.++  +..
T Consensus       138 g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~  214 (686)
T PRK10115        138 NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDE  214 (686)
T ss_pred             CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCe
Confidence            566665543 343    999999888743333221   12569999999876665432      36888888887  444


Q ss_pred             eEeecCCCCee-EEEEccCCCEEEEEC-----CeEEEEEC
Q 008058          153 GKFRASTKGIS-CMAVSSDGKMLATAA-----GQLKTFNC  186 (579)
Q Consensus       153 ~~~~~~~~~v~-~l~~~p~g~~l~~~~-----g~i~vwd~  186 (579)
                      ..+........ .+..+.++++++..+     +.+.+|+.
T Consensus       215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            44554333333 333444888766544     57888885

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.54  E-value=2.5  Score=45.96  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058          119 GVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                      .|..+.++|+|.+++..|..|. .+..+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v-~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGV-VVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcE-EEEEe
Confidence            5888999999999988887664 44443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15)

Probab=93.34  E-value=0.17  Score=42.94  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=69.8

Q ss_pred             hhHHHHhhccChhhHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHhcccccCCCChhHHHHHHHHHHHHhh--hhhhhh
Q 008058          492 KKMRATILSLSPTNACKLLEVLVDLWQSRSYKGKNILQWIYFILVNHGHHLLSQESLTPMLSSLYKVRKKKL--FASAFT  569 (579)
Q Consensus       492 ~~i~~tv~~Lp~~~~~~lL~~l~~~~~~~~~~~~~~~~wl~~ll~~h~~~l~s~~~l~~~l~~l~~~~~~r~--~~~~~~  569 (579)
                      ..++..+..-+...+.++|+|+. +.-.+|.....++.++..+|-..+..+-..|.+...+..|+..+.+-+  +..+..
T Consensus        62 ~~L~~AL~~Rde~~L~piL~Fl~-k~i~~pr~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v~~E~~~~~~l~~  140 (148)
T PF09384_consen   62 GALRAALAGRDEESLEPILKFLI-KNITDPRYTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKVQEELQLQKELLE  140 (148)
T ss_pred             cHHHHHHHhCCHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788888899999999999999 555889999999999999999999999999889999999999888777  555555


Q ss_pred             hceeeeE
Q 008058          570 CFILLYL  576 (579)
Q Consensus       570 ~~~~~~~  576 (579)
                      ..|-|.|
T Consensus       141 l~G~ld~  147 (148)
T PF09384_consen  141 LQGMLDM  147 (148)
T ss_pred             HHhHHhh
Confidence            4444433

This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.26  E-value=3.8  Score=43.45  Aligned_cols=113  Identities=13%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCC---
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDG---  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~s~s~~d~~i~vwd~~~---  231 (579)
                      ..+.-+.-+.-++..++-+  ..+.|||.+.+.....-. ...+.|..+.|.  |+|+.+++.| -.+.|.+|.-..   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDY  108 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhh
Confidence            3455555555555555544  699999999887533222 356889999885  7899999988 488888885321   


Q ss_pred             -CccccceeEEe---eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          232 -VKKQSASCVLA---MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                       ....+...+..   ..+....+....|-     ++|..++++  ++.+.|||
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence             11111112222   12333344555554     677766544  45888887

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.25  E-value=4.9  Score=41.45  Aligned_cols=116  Identities=9%  Similarity=0.077  Sum_probs=73.3

Q ss_pred             CCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCC-----CCceeeEeecCCC-----CeeEEEEccCCCEEEEEC-Ce
Q 008058          116 HPGGVSAISFATH----GSCIYSAGADGMVCEIDPL-----TGSLLGKFRASTK-----GISCMAVSSDGKMLATAA-GQ  180 (579)
Q Consensus       116 h~~~V~~l~~~~~----~~~l~s~~~dg~v~iwd~~-----~~~~~~~~~~~~~-----~v~~l~~~p~g~~l~~~~-g~  180 (579)
                      +-.-|.++.|.|-    -..+++.-....|.+|.+.     .++.+..-..+-.     -...+.|+|....|++=. ..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d  134 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD  134 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc
Confidence            3456899999984    3356666688899999875     2232222111111     224568999988887655 44


Q ss_pred             E-EEEECCC--CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          181 L-KTFNCSD--HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       181 i-~vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      + .+++++.  .+....+. ..+.|.+.+|.+||+.|+.+-...=.-++||-...
T Consensus       135 vSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             eeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            4 3445543  33344453 56789999999999988876533335678885543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.14  E-value=3.6  Score=41.24  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCC-------------------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058          118 GGVSAISFATHGSCIYSAGAD-------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~d-------------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      .....+.|.|||.+.++.+..                   |.|.-+|...++. ..+...-.....++|+|+|+++++-.
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            447889999999866554421                   3345555443332 22221122345677777777665533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.03  E-value=8.9  Score=36.87  Aligned_cols=134  Identities=19%  Similarity=0.262  Sum_probs=81.5

Q ss_pred             eEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCC-----CEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008058           97 DVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHG-----SCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------  158 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~-----~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------  158 (579)
                      +|.+||+.+++.+.++.-.     ..+.+.++.+....     .+++.+. ..+-+.++|+.+++..+....+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            4778899998877665321     24567888887622     2444443 4467999999988765443321       


Q ss_pred             ------------CCCeeEEEEcc---CCCEEEEEC-CeEEEEECCCC--------------eeeEEeecC-CCCEEEEEE
Q 008058          159 ------------TKGISCMAVSS---DGKMLATAA-GQLKTFNCSDH--------------KKMQKFSGH-PGAVRFMTF  207 (579)
Q Consensus       159 ------------~~~v~~l~~~p---~g~~l~~~~-g~i~vwd~~~~--------------~~~~~~~~h-~~~v~~l~~  207 (579)
                                  ...+..++.+|   +|+.|.-.. ..-++|.+.+.              +.+..+ |. .+....+++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence                        23466777765   667777665 44455544321              112222 22 246678899


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +++|..+++-- ..+.|..|+..+.
T Consensus       194 D~~G~ly~~~~-~~~aI~~w~~~~~  217 (287)
T PF03022_consen  194 DPNGNLYFTDV-EQNAIGCWDPDGP  217 (287)
T ss_dssp             ETTTEEEEEEC-CCTEEEEEETTTS
T ss_pred             CCCCcEEEecC-CCCeEEEEeCCCC
Confidence            99998777665 7899999998874

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.62  E-value=0.33  Score=51.83  Aligned_cols=137  Identities=14%  Similarity=0.176  Sum_probs=80.7

Q ss_pred             CeEEEEEcc--CCeEE----EEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE-
Q 008058           96 GDVLALAVS--AGQLK----WRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM-  165 (579)
Q Consensus        96 g~i~iwd~~--~~~~~----~~~~~~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l-  165 (579)
                      |...+|++.  .|+..    .+........+.-+.|.|   +.-++..+-.++.+++....+... ..|++|...+..+ 
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            668888876  34332    222222333444445544   566677777888888876543322 3345565544433 


Q ss_pred             ----------EEccCCCEEEEEC--CeE-----EEEECCCCeeeEEeecCC-CCEEEEEEecCC---------CEEEEEe
Q 008058          166 ----------AVSSDGKMLATAA--GQL-----KTFNCSDHKKMQKFSGHP-GAVRFMTFSDNG---------KYVLSSA  218 (579)
Q Consensus       166 ----------~~~p~g~~l~~~~--g~i-----~vwd~~~~~~~~~~~~h~-~~v~~l~~~~~~---------~~l~s~s  218 (579)
                                .++|||+.++.+.  |.+     +|.+....+++..++.|. .+-.|.-|+.+.         .++++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt  311 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT  311 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence                      3689999999876  654     444555556677777777 343333344321         2456666


Q ss_pred             cCCCeEEEEEcCCCc
Q 008058          219 VGERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~  233 (579)
                      ..++-+++|.....+
T Consensus       312 d~nre~k~w~~a~w~  326 (1283)
T KOG1916|consen  312 DVNREEKFWAEAPWQ  326 (1283)
T ss_pred             cCCcceeEeeccchh
Confidence            566778999876655

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.36  E-value=9.4  Score=35.53  Aligned_cols=177  Identities=14%  Similarity=0.083  Sum_probs=112.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE---eecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK---FRASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~v  162 (579)
                      +..-+.+...|.|--.|..+|+...-- -+....-..+..-|||..-++-+.. -|.-.|.++.+..+-   .+......
T Consensus        73 G~VWft~qg~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nl  150 (353)
T COG4257          73 GAVWFTAQGTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANL  150 (353)
T ss_pred             CceEEecCccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcc
Confidence            566677788888888999999876333 3455667888889998876654443 566667655543221   12223477


Q ss_pred             eEEEEccCCCEEEEEC----C-------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          163 SCMAVSSDGKMLATAA----G-------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~----g-------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ....|.+.|++-.++.    |       .|++|+.-          ....-..|+..|+|..-++.- .++.|-..|...
T Consensus       151 et~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasl-agnaiaridp~~  219 (353)
T COG4257         151 ETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASL-AGNAIARIDPFA  219 (353)
T ss_pred             cceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEec-cccceEEccccc
Confidence            8889999999988876    2       34455432          223356788999998766653 677888888776


Q ss_pred             CccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          232 VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +...    ++..... ..-..-++.+     |.|+.-++....|.++-||..+.
T Consensus       220 ~~ae----v~p~P~~~~~gsRriwsd-----pig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         220 GHAE----VVPQPNALKAGSRRIWSD-----PIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             CCcc----eecCCCcccccccccccC-----ccCcEEEeccCCceeeEeCcccc
Confidence            6322    1111111 1222334443     77777777666778888875543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.29  E-value=13  Score=36.96  Aligned_cols=191  Identities=15%  Similarity=0.250  Sum_probs=106.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-   94 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-   94 (579)
                      ...+++....++=+.+||++ |+.++.+.........+.+.-                 +.+.+      ..-|++++. 
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf-----------------~l~g~------~vDlavas~R  122 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGF-----------------PLNGK------TVDLAVASDR  122 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEE-----------------EETTE------EEEEEEEEE-
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecce-----------------ecCCc------eEEEEEEecC
Confidence            44567777778889999986 666666642111111111110                 00100      112444443 


Q ss_pred             C---CeEEEEEcc--CCeEEEEecC-C-----CCCCEEEEEEc--c-CCC-EEEEEeCCCcEEEEeCC---CC----cee
Q 008058           95 G---GDVLALAVS--AGQLKWRLSD-C-----HPGGVSAISFA--T-HGS-CIYSAGADGMVCEIDPL---TG----SLL  152 (579)
Q Consensus        95 ~---g~i~iwd~~--~~~~~~~~~~-~-----h~~~V~~l~~~--~-~~~-~l~s~~~dg~v~iwd~~---~~----~~~  152 (579)
                      +   ..|++|.+.  ++... .+.. .     ....++.+|+-  | +|. +++....+|.+..|-+.   .+    +.+
T Consensus       123 ~~g~n~l~~f~id~~~g~L~-~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV  201 (381)
T PF02333_consen  123 SDGRNSLRLFRIDPDTGELT-DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV  201 (381)
T ss_dssp             CCCT-EEEEEEEETTTTEEE-E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCeEEEEEecCCCCcce-EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence            2   358888775  44432 2211 1     11347788773  3 455 46667788988888764   33    467


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CC-CEEEEEecC
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NG-KYVLSSAVG  220 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~~~--~~-~~l~s~s~~  220 (579)
                      ++|.. ...+..+........|+.+.  .-|+-|+.+.     ++.+....+  ....|-.|++..  ++ .||++++..
T Consensus       202 R~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  202 REFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             EEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             EEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence            77775 34788999998888888887  4566666652     233333322  346788887754  33 378887778


Q ss_pred             CCeEEEEEcCCC
Q 008058          221 ERYIALWRTDGV  232 (579)
Q Consensus       221 d~~i~vwd~~~~  232 (579)
                      +++..+|+....
T Consensus       281 ~~sf~Vy~r~~~  292 (381)
T PF02333_consen  281 DNSFAVYDREGP  292 (381)
T ss_dssp             GTEEEEEESSTT
T ss_pred             CCeEEEEecCCC
Confidence            899999997754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.27  E-value=8.3  Score=38.68  Aligned_cols=100  Identities=14%  Similarity=0.269  Sum_probs=59.7

Q ss_pred             CCEEEEEEccCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeEeecCCCCeeEEEEccCCCEEEEECCeE
Q 008058          118 GGVSAISFATHGSCIYSAG-----------ADG-MVCEIDPLT--GS--LLGKFRASTKGISCMAVSSDGKMLATAAGQL  181 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~--~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i  181 (579)
                      .....++|.++|+.+++..           ..+ .|.+++-.+  |+  ....|...-.....+++.++| ++++....|
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i   92 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI   92 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence            4567889999998766642           223 677776443  33  223444334456889999998 555544666


Q ss_pred             EEE-ECCC-------Ceee-EEeec----CCCCEEEEEEecCCCEEEEEe
Q 008058          182 KTF-NCSD-------HKKM-QKFSG----HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       182 ~vw-d~~~-------~~~~-~~~~~----h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ..| |...       .+.+ ..+..    +......+.|.|||.+.++.+
T Consensus        93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            655 4421       1112 22322    134477899999998766655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=92.18  E-value=1.4  Score=44.41  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC-eeEEEEccC-----------------CCEEEEEC-
Q 008058          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG-ISCMAVSSD-----------------GKMLATAA-  178 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~l~~~p~-----------------g~~l~~~~-  178 (579)
                      ..+.+++.+|++++.++...-|.|.++|+.++..++.+++..+. +.=+.....                 ..+|+.=. 
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            34788999999999888888899999999999999888876542 111111111                 11233322 


Q ss_pred             --CeEEEEECCCCeeeEEeec
Q 008058          179 --GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       179 --g~i~vwd~~~~~~~~~~~~  197 (579)
                        |.|.||++++|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence              8999999999988877753

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.10  E-value=4.8  Score=43.22  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=65.0

Q ss_pred             CcEEEEEECCCeEEEEEccC-------C----eE-E------EEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEe
Q 008058           86 SSLLVLGTGGGDVLALAVSA-------G----QL-K------WRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEID  145 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~-------~----~~-~------~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd  145 (579)
                      ...|++|+.||.|.+|.+++       .    +. .      ..+...-...+++++++  ...++||.++....|.+|-
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            67899999999999997732       1    00 0      00111233578999998  7778888888888888875


Q ss_pred             CCCC--ceee-EeecCCCCeeEEEEccCC-----C-EEEEEC--CeEEEEEC
Q 008058          146 PLTG--SLLG-KFRASTKGISCMAVSSDG-----K-MLATAA--GQLKTFNC  186 (579)
Q Consensus       146 ~~~~--~~~~-~~~~~~~~v~~l~~~p~g-----~-~l~~~~--g~i~vwd~  186 (579)
                      ....  +... .-..+...|-+|+|-++.     . .+++++  |.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            4431  1111 011245578889987643     2 566666  88888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=91.80  E-value=1  Score=41.30  Aligned_cols=29  Identities=14%  Similarity=0.259  Sum_probs=24.0

Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCceee
Q 008058          125 FATHGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus       125 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  153 (579)
                      +..++.++++.+.+|.+++||+.+++.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~   46 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVL   46 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence            34478899999999999999999887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK13684 Ycf48-like protein; Provisional

Probab=91.79  E-value=14  Score=36.39  Aligned_cols=111  Identities=17%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008058          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDH  189 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~  189 (579)
                      .-...++++.+.++++.++.+ ..|.+++=....|........+    ...+..+.+.|++..++++. |.+. .....+
T Consensus       212 ~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G  289 (334)
T PRK13684        212 NSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGG  289 (334)
T ss_pred             CCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCC
Confidence            344678999999998876655 5676654233444433322211    23578899999988888877 6554 444555


Q ss_pred             eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       190 ~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      +.-....   +-......+.|..+++.++++  ..|.|-.|+-
T Consensus       290 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~G~il~~~~  330 (334)
T PRK13684        290 KTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG--QRGVLLRYVG  330 (334)
T ss_pred             CCCeECCcCCCCCcceEEEEEeCCCceEEEC--CCceEEEecC
Confidence            4433332   222357788888777776654  5788877753

>PLN02193 nitrile-specifier protein

Probab=91.69  E-value=19  Score=37.56  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=68.0

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEecCC-CCC--CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008058           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDC-HPG--GVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~-h~~--~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~  150 (579)
                      +.+++.|..+       ..+..||+.+.+.......+ ...  ........-++...+.|+.+     ..+..||+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4455555542       24788898887654211111 001  11111112245555666644     358889987654


Q ss_pred             eeeE--eec-CCC-CeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCE
Q 008058          151 LLGK--FRA-STK-GISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKY  213 (579)
Q Consensus       151 ~~~~--~~~-~~~-~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~  213 (579)
                      -...  ... ... .-.+++. -++++++.|+       ..+..||+.+.+-.. +..      .... ..++. -+++.
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~-~~~~~-~~gki  331 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGG-AGLEV-VQGKV  331 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCC-cEEEE-ECCcE
Confidence            3221  100 111 1122222 3566666665       257788887764321 111      0111 12222 25666


Q ss_pred             EEEEecCC----CeEEEEEcCCCc
Q 008058          214 VLSSAVGE----RYIALWRTDGVK  233 (579)
Q Consensus       214 l~s~s~~d----~~i~vwd~~~~~  233 (579)
                      ++.++ .+    ..+.+||+.+.+
T Consensus       332 yviGG-~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        332 WVVYG-FNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             EEEEC-CCCCccCceEEEECCCCE
Confidence            66665 34    458888988765

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.50  E-value=15  Score=36.15  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=22.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~   39 (579)
                      ..++|.|||+.|++ ...|.|++++ ..+..
T Consensus         5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~   33 (331)
T PF07995_consen    5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL   33 (331)
T ss_dssp             EEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred             eEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence            35699999987665 5599999999 44554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.34  E-value=1  Score=28.67  Aligned_cols=32  Identities=22%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             CCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCC
Q 008058          118 GGVSAISFATHG---SCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus       118 ~~V~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~  149 (579)
                      +.|.++.|+|++   .+|+.+-.-|.|.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   47888878899999999853

It contains a characteristic DLL sequence motif.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.23  E-value=3.6  Score=41.46  Aligned_cols=135  Identities=16%  Similarity=0.257  Sum_probs=84.9

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-------EEEEEeCCCcEEEEeCCC-CceeeE--eec--CC
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-------CIYSAGADGMVCEIDPLT-GSLLGK--FRA--ST  159 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-------~l~s~~~dg~v~iwd~~~-~~~~~~--~~~--~~  159 (579)
                      |.....++-.|+..|+.+.... -|.. | -+.|.|+.+       .-+.|-++..|.-.|.+- |..+..  ++.  ..
T Consensus       486 g~~~~kLykmDIErGkvveeW~-~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK  562 (776)
T COG5167         486 GGERDKLYKMDIERGKVVEEWD-LKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK  562 (776)
T ss_pred             CCCcccceeeecccceeeeEee-cCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc
Confidence            4444568888999999886653 2433 3 566777532       223455566677777763 322222  111  11


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ....|..-..+ -++++++  |.|++||--..+....+++-...|..+..+.+|++++++|  ..++-+-|++-.
T Consensus       563 n~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~ik  634 (776)
T COG5167         563 NKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPIK  634 (776)
T ss_pred             ccccccccccC-ceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEecccc
Confidence            23344443433 4777777  9999999544344445677788899999999999998886  568888887643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.22  E-value=3.8  Score=45.51  Aligned_cols=125  Identities=12%  Similarity=-0.015  Sum_probs=77.6

Q ss_pred             EECCC-eEEEEEccCCeEE----EE------ecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEeecC
Q 008058           92 GTGGG-DVLALAVSAGQLK----WR------LSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKFRAS  158 (579)
Q Consensus        92 ~~~~g-~i~iwd~~~~~~~----~~------~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~-~~~~~~~~  158 (579)
                      -+.+| .|..||+.+-...    ..      +.........++.|+|.-.. .+.+..|+.|++..+.... .+..+. .
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~  197 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-V  197 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-c
Confidence            33334 4899998753211    01      11122344677888885433 5667788988888765332 222222 3


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC----CCCEEEEEEecCCCEEEEEe
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH----PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ....+|++|+|.|+.++.|.  |++.-|-. +.+....+.+.    ...|.+|.|-....++++-+
T Consensus       198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            45789999999999999998  78877754 33333333221    36789999987776766543

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=91.15  E-value=2.3  Score=39.35  Aligned_cols=140  Identities=14%  Similarity=0.135  Sum_probs=73.4

Q ss_pred             EEEeCCCCceeeEeecC-CCCeeEEEEccCCCEEEEEC-----CeEEEEECCC---CeeeEEee---cCCCCEEEEEEec
Q 008058          142 CEIDPLTGSLLGKFRAS-TKGISCMAVSSDGKMLATAA-----GQLKTFNCSD---HKKMQKFS---GHPGAVRFMTFSD  209 (579)
Q Consensus       142 ~iwd~~~~~~~~~~~~~-~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~---~~~~~~~~---~h~~~v~~l~~~~  209 (579)
                      .+||+.+++.. .+... .-...+-.+.|||+++.+|+     ..+++++..+   ........   .....-.+...-|
T Consensus        49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            57888877543 22222 22344456779999999988     3688888654   11111110   1112223344557


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ||+.++.+|....+...|.-....... .....+.     ......-.++.-     |+|+.++.+..+  -.|||..+.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~-~~~~~l~~~~~~~~~nlYP~~~ll-----PdG~lFi~an~~--s~i~d~~~n  199 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGP-VTLPFLSQTSDTLPNNLYPFVHLL-----PDGNLFIFANRG--SIIYDYKTN  199 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCc-eeeecchhhhccCccccCceEEEc-----CCCCEEEEEcCC--cEEEeCCCC
Confidence            999999998654455555542221110 0000010     111111223333     899999888765  455687777


Q ss_pred             eeeccc
Q 008058          285 EELRNT  290 (579)
Q Consensus       285 ~~~~~~  290 (579)
                      +.++..
T Consensus       200 ~v~~~l  205 (243)
T PF07250_consen  200 TVVRTL  205 (243)
T ss_pred             eEEeeC
Confidence            655544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.76  E-value=6.8  Score=39.78  Aligned_cols=94  Identities=11%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC
Q 008058          119 GVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH  198 (579)
Q Consensus       119 ~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h  198 (579)
                      .|..+..++.|..++-++.+|.+.++=.+..-.-..++..+..|+|=.+.-+. .+++.+                   .
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss-------------------~  164 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSS-------------------T  164 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccC-------------------C
Confidence            46778889999999988899976665443333333333333334443333222 111111                   1


Q ss_pred             CCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCc
Q 008058          199 PGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       199 ~~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .-.+...+|+|++   ..|..-. .|+.+++||+....
T Consensus       165 ~ltl~Qa~WHP~S~~D~hL~iL~-sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  165 SLTLKQAAWHPSSILDPHLVLLT-SDNVIRIYSLSEPT  201 (741)
T ss_pred             ceeeeeccccCCccCCceEEEEe-cCcEEEEEecCCcc
Confidence            1224456677754   3455554 48888888887654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.76  E-value=3.9  Score=46.14  Aligned_cols=146  Identities=14%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (579)
Q Consensus        23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd  102 (579)
                      .+.|+.+.+|+..++.....+.+....+..+..-.+ .+|-+...+                  .++++-+.--+|.++-
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkP-kpgvFv~~I------------------qhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKP-KPGVFVPEI------------------QHLLVVATPVEIVILG  155 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecC-CCCcchhhh------------------heeEEecccceEEEEE
Confidence            345889999999998877778766665554433322 122221111                  2233333344445544


Q ss_pred             ccCCeEE--EEec------CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCC---c-e----------------e
Q 008058          103 VSAGQLK--WRLS------DCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTG---S-L----------------L  152 (579)
Q Consensus       103 ~~~~~~~--~~~~------~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~---~-~----------------~  152 (579)
                      +.-++..  ...+      .-....|+|+....+|+.|++| .||.|+-.-.  .+|   + +                +
T Consensus       156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~  234 (1311)
T KOG1900|consen  156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL  234 (1311)
T ss_pred             EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence            3321110  0001      1124568899988888776665 6665544322  111   1 1                1


Q ss_pred             eEee-cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC
Q 008058          153 GKFR-ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD  188 (579)
Q Consensus       153 ~~~~-~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~  188 (579)
                      -.+. .+..+|..+++...-.++.+=+  |.|.+||+..
T Consensus       235 ~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  235 LSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            1122 3566999999988777777766  9999999976

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.09  E-value=23  Score=35.81  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecC--CCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008058          116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-----LLGKFRAS--TKGISCMAVSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       116 h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~--~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~  187 (579)
                      ....++++.|.+++..++++ .+|.+. |....++     ........  ...+..+.+.+++..+++|. |.+... ..
T Consensus       279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D  355 (398)
T PLN00033        279 SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TD  355 (398)
T ss_pred             CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CC
Confidence            34578999999998877655 666653 3334443     22222211  23588999999999999998 666555 34


Q ss_pred             CCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          188 DHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       188 ~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .|+.-....   .-......+.|.++++-++++  .+|.|--|
T Consensus       356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G--~~G~il~~  396 (398)
T PLN00033        356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG--NDGVLLRY  396 (398)
T ss_pred             CCcceeEccccCCCCcceeEEEEcCCCceEEEe--CCcEEEEe
Confidence            454433322   234567899998877766664  58877654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=90.08  E-value=23  Score=35.79  Aligned_cols=144  Identities=15%  Similarity=0.115  Sum_probs=75.8

Q ss_pred             EEEEEccCCCEEEEEeCCCcE-EEEeCCCCcee-eEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe-----e
Q 008058          121 SAISFATHGSCIYSAGADGMV-CEIDPLTGSLL-GKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK-----K  191 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~dg~v-~iwd~~~~~~~-~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~-----~  191 (579)
                      ..+..+++|.+++.+. .|.+ +-||  .|... ... ......++++.+.+++.+++++. |.+. +....++     .
T Consensus       242 ~~v~~~~dG~~~~vg~-~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~-~S~d~G~~~~~~~  317 (398)
T PLN00033        242 STVNRSPDGDYVAVSS-RGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLY-VSKGTGLTEEDFD  317 (398)
T ss_pred             eeEEEcCCCCEEEEEC-CccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEE-EecCCCCcccccc
Confidence            3445667776666553 4443 3344  23321 111 22344789999999999998888 5543 3344443     1


Q ss_pred             eEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEE
Q 008058          192 MQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       192 ~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  269 (579)
                      ......  -...+..+.|.+++..++++  .+|.+.... ..++.-.  .......-...+..+.|.     ++ ....+
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G--~~G~v~~s~-D~G~tW~--~~~~~~~~~~~ly~v~f~-----~~-~~g~~  386 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG--GSGILLRST-DGGKSWK--RDKGADNIAANLYSVKFF-----DD-KKGFV  386 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE--CCCcEEEeC-CCCccee--EccccCCCCcceeEEEEc-----CC-CceEE
Confidence            222221  12348889999888766654  478665553 4443210  111001111223345553     33 45566


Q ss_pred             EEcCCeEEEE
Q 008058          270 ISETGVCYIW  279 (579)
Q Consensus       270 ~~~dg~i~iw  279 (579)
                      .+.+|.|.-|
T Consensus       387 ~G~~G~il~~  396 (398)
T PLN00033        387 LGNDGVLLRY  396 (398)
T ss_pred             EeCCcEEEEe
Confidence            6777887665

>PLN02153 epithiospecifier protein

Probab=89.92  E-value=22  Score=35.25  Aligned_cols=103  Identities=14%  Similarity=0.164  Sum_probs=50.5

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCC-----CcEEEEeCCC
Q 008058           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGAD-----GMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~  148 (579)
                      +.++++|+.+       .++.+||+.+.+.......+...     ....+.+  +++.++.|+.+     ..+.+||+.+
T Consensus        33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCC
Confidence            4455555542       35889998887654221111101     1222333  45566666643     3578899876


Q ss_pred             Cceee--Eeec---CCCCeeEEEEccCCCEEEEEC----C---------eEEEEECCCCe
Q 008058          149 GSLLG--KFRA---STKGISCMAVSSDGKMLATAA----G---------QLKTFNCSDHK  190 (579)
Q Consensus       149 ~~~~~--~~~~---~~~~v~~l~~~p~g~~l~~~~----g---------~i~vwd~~~~~  190 (579)
                      .+-..  .+..   ........+..-++++++.|+    +         .+.+||..+.+
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~  170 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK  170 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence            53221  1110   111112122223566666665    1         46788887654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.36  E-value=1.8  Score=26.89  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=23.2

Q ss_pred             eecCCCCEEEEEEecCCCEEEEEecCC--CeEEEE
Q 008058          195 FSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALW  227 (579)
Q Consensus       195 ~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vw  227 (579)
                      +......-....|+|||++|+.++..+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344556677889999999998888666  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.27  E-value=1.2  Score=28.33  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=24.9

Q ss_pred             CcccceEEEEccC-C--CEEEEEeCCCcEEEEECCCC
Q 008058            4 SNIRDILTSFSPA-L--DYFAICSGDARIKIWDTLKG   37 (579)
Q Consensus         4 ~~V~~~~~~fs~d-g--~~las~s~dg~i~vwd~~~~   37 (579)
                      ++||++  .|||+ +  ++|+..-.-|.|.|+|++++
T Consensus         1 GAvR~~--kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCC--KFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEE--EeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            457666  99984 4  58888877899999999853

It contains a characteristic DLL sequence motif.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.99  E-value=43  Score=37.40  Aligned_cols=115  Identities=10%  Similarity=0.039  Sum_probs=76.3

Q ss_pred             cCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCC----------CCEEEEEEccCCC
Q 008058           65 SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHP----------GGVSAISFATHGS  130 (579)
Q Consensus        65 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~~~~~~  130 (579)
                      +.....++++|.+        ...+|+....|.-.||++...    .........+.          +.-..+.|.++-+
T Consensus       145 g~~~aDv~FnP~~--------~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~  216 (765)
T PF10214_consen  145 GFPHADVAFNPWD--------QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN  216 (765)
T ss_pred             CCccceEEeccCc--------cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC
Confidence            3456667777765        558999999999999999211    11111111122          2334778888877


Q ss_pred             EEEEEeCCCcEEEEeCCCCceee-Eee-cCCCCeeEEEEccC--CCEEEEECCeEEEEECCC
Q 008058          131 CIYSAGADGMVCEIDPLTGSLLG-KFR-ASTKGISCMAVSSD--GKMLATAAGQLKTFNCSD  188 (579)
Q Consensus       131 ~l~s~~~dg~v~iwd~~~~~~~~-~~~-~~~~~v~~l~~~p~--g~~l~~~~g~i~vwd~~~  188 (579)
                      .|+.++. ..+.++|+.+..... ... .....|..+.-+|+  +..++..+..|...++..
T Consensus       217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             EEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            8887754 568899998775533 222 23347888888887  566666778888888876

These proteins are found in fungi.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.94  E-value=2.6  Score=38.60  Aligned_cols=61  Identities=16%  Similarity=0.211  Sum_probs=44.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe------cC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRL------SD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      +.++++.+.+|.+++||+.+++.+..-      ..       .....|..+.++.+|.-+++- .+|..+.||..
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~   95 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPD   95 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccc
Confidence            788999999999999999998875332      11       244567777777777666554 35677777754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=88.73  E-value=6.5  Score=41.94  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CcEEEEEECCCeEEEEEccC----CeEEEE-ecCC--------------------CCCCEEEEEEcc----CCCEEEEEe
Q 008058           86 SSLLVLGTGGGDVLALAVSA----GQLKWR-LSDC--------------------HPGGVSAISFAT----HGSCIYSAG  136 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~----~~~~~~-~~~~--------------------h~~~V~~l~~~~----~~~~l~s~~  136 (579)
                      ...++++..||.+.......    +..... ....                    ....+..+++++    +..++++.+
T Consensus       158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~  237 (547)
T PF11715_consen  158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS  237 (547)
T ss_dssp             SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence            66788899999988877664    221111 1111                    123456666666    677899999


Q ss_pred             CCCcEEEEeCCCCceeeEeecC
Q 008058          137 ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus       137 ~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      .|+++|+||+.+++++.+....
T Consensus       238 ~D~~LRiW~l~t~~~~~~~~~~  259 (547)
T PF11715_consen  238 RDHTLRIWSLETGQCLATIDLL  259 (547)
T ss_dssp             TTSEEEEEETTTTCEEEEEETT
T ss_pred             CCCeEEEEECCCCeEEEEeccc
Confidence            9999999999999998776543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.24  E-value=29  Score=37.13  Aligned_cols=173  Identities=9%  Similarity=0.112  Sum_probs=0.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .+.|  +.+.|.++++.+++...+|.|.+||...+.....-+..........|+ .+...+.....              
T Consensus       129 ~~kv--v~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~--------------  191 (670)
T PF10395_consen  129 DDKV--VGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENG--------------  191 (670)
T ss_pred             ccce--EEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccC--------------


Q ss_pred             ccCCcEEEEEEC-CCe---EEEEEc-cCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           83 KLGSSLLVLGTG-GGD---VLALAV-SAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        83 ~~~~~~l~~~~~-~g~---i~iwd~-~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                         ..++++-+. ++.   .+++.+ .....+..+.  .-+........|.-+...|+.= .+++|.+|++...+..+++
T Consensus       192 ---~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI  267 (670)
T PF10395_consen  192 ---KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTI  267 (670)
T ss_pred             ---CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEE


Q ss_pred             ecC-----C-CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee
Q 008058          156 RAS-----T-KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       156 ~~~-----~-~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~  196 (579)
                      .-.     . ..+.++.--...+.|++..+.|++.|+.-...+.++.
T Consensus       268 ~l~~ii~~~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  268 SLPSIIDKESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             EechhhccccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.08  E-value=28  Score=34.13  Aligned_cols=103  Identities=12%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcee---eEeecCCCCe--eEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008058          128 HGSCIYSAGAD-----GMVCEIDPLTGSLL---GKFRASTKGI--SCMAVSSDGKMLATAA-------GQLKTFNCSDHK  190 (579)
Q Consensus       128 ~~~~l~s~~~d-----g~v~iwd~~~~~~~---~~~~~~~~~v--~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~  190 (579)
                      ++..++.|+.+     ..+..+|+.+.+-.   ..+..-..+.  .+++. -++++.+.|+       ..+..||..+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566666654     35777787665431   1211111111  12222 2567777665       368889988764


Q ss_pred             ee--EEeecCCCCEEEEEEecCCCEEEEEecCCC----eEEEEEcCCCc
Q 008058          191 KM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGER----YIALWRTDGVK  233 (579)
Q Consensus       191 ~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~  233 (579)
                      -.  ..+... ..........+++..+.+| .++    .+.+||+.+.+
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG-~~~~~~~~~~~yd~~~~~  197 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQNELYVFGG-GSNIAYTDGYKYSPKKNQ  197 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEECCEEEEEcC-CCCccccceEEEecCCCe
Confidence            32  222211 1112222334566666666 343    24677877654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=86.88  E-value=3.6  Score=25.79  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058          127 THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus       127 ~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |++++++++. .+++|.++|..+++.+..+... .....++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence            5777766655 5789999999988888877653 33345554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.83  E-value=49  Score=35.59  Aligned_cols=145  Identities=15%  Similarity=0.127  Sum_probs=73.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~  160 (579)
                      ..-|+....+|.+++|++.......  .-.......|..+.|..+|-.+.+  .+|++.+-+-......++++.   ..-
T Consensus        94 ~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~  171 (829)
T KOG2280|consen   94 DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNEL  171 (829)
T ss_pred             CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccC
Confidence            4568899999999999986443321  111222345666666666644444  455555544222222223322   111


Q ss_pred             CeeEEEEccCCC---EEEEEC---C-eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          161 GISCMAVSSDGK---MLATAA---G-QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~---~l~~~~---g-~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +-+|-...+++.   .++-..   + .+..-+....+.. .+....+.+..+..||+.++|+--. .+|.|.+-+.+..+
T Consensus       172 ~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~-~~~~~~~~~~ki~VS~n~~~laLyt-~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  172 PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH-ALSWPNSSVVKISVSPNRRFLALYT-ETGKIWVVSIDLSQ  249 (829)
T ss_pred             CCcceeEecCCCcceeEEeechhhhhcccceeccccccc-ccCCCCceEEEEEEcCCcceEEEEe-cCCcEEEEecchhh
Confidence            212322223221   111111   0 1111111122221 2222235678899999999988876 68888888776654


Q ss_pred             c
Q 008058          234 K  234 (579)
Q Consensus       234 ~  234 (579)
                      .
T Consensus       250 ~  250 (829)
T KOG2280|consen  250 I  250 (829)
T ss_pred             h
Confidence            3

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.69  E-value=67  Score=37.00  Aligned_cols=26  Identities=23%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEE
Q 008058          158 STKGISCMAVSSDGKMLATAAGQLKT  183 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~g~i~v  183 (579)
                      +-..+.+++.+|||..+++-.|.++|
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCchhh
Confidence            44577899999999888765554443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.39  E-value=31  Score=32.90  Aligned_cols=198  Identities=16%  Similarity=0.136  Sum_probs=101.1

Q ss_pred             CcEEEEEECCCeEEEEEcc------CC-eEEEEecC--C--CCCCEEEEEEccCCC------------EEEEEeCCCcEE
Q 008058           86 SSLLVLGTGGGDVLALAVS------AG-QLKWRLSD--C--HPGGVSAISFATHGS------------CIYSAGADGMVC  142 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~------~~-~~~~~~~~--~--h~~~V~~l~~~~~~~------------~l~s~~~dg~v~  142 (579)
                      +.+-++....+...+||..      .. .++..+..  +  .....+.+.|+....            .++.++.||+|.
T Consensus        34 ~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis  113 (336)
T TIGR03118        34 GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS  113 (336)
T ss_pred             CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE
Confidence            4455666667789999986      12 22323321  1  224577888875322            367788999999


Q ss_pred             EEeCCCCce-----eeEeecC-CC-CeeEEEEc--cCCCEEEEEC---CeEEEEECCCCeeeE--Eeec-----CCCC--
Q 008058          143 EIDPLTGSL-----LGKFRAS-TK-GISCMAVS--SDGKMLATAA---GQLKTFNCSDHKKMQ--KFSG-----HPGA--  201 (579)
Q Consensus       143 iwd~~~~~~-----~~~~~~~-~~-~v~~l~~~--p~g~~l~~~~---g~i~vwd~~~~~~~~--~~~~-----h~~~--  201 (579)
                      -|...-+..     +..+... .+ -...+++.  ..+.+|..+.   ++|.|||-.=.+...  .|..     ...+  
T Consensus       114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn  193 (336)
T TIGR03118       114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN  193 (336)
T ss_pred             eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcc
Confidence            998643322     1222211 12 23345554  3477888887   899999864322110  1110     0011  


Q ss_pred             ---------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCce--eeEeEEecCCcc-cCCCcEEEE
Q 008058          202 ---------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGV-DDAGLYVLA  269 (579)
Q Consensus       202 ---------v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~l~s  269 (579)
                               |+-..-.++++.=+.+. .-|.|.+||+...-.      ..+.+...  .-..+...+..+ ...|..|+-
T Consensus       194 Iqnig~~lyVtYA~qd~~~~d~v~G~-G~G~VdvFd~~G~l~------~r~as~g~LNaPWG~a~APa~FG~~sg~lLVG  266 (336)
T TIGR03118       194 VQNLGGTLYVTYAQQDADRNDEVAGA-GLGYVNVFTLNGQLL------RRVASSGRLNAPWGLAIAPESFGSLSGALLVG  266 (336)
T ss_pred             eEEECCeEEEEEEecCCcccccccCC-CcceEEEEcCCCcEE------EEeccCCcccCCceeeeChhhhCCCCCCeEEe
Confidence                     11111122222222222 457899999876532      22221110  111112211111 134565555


Q ss_pred             EEcCCeEEEEECCCceeeccc
Q 008058          270 ISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       270 ~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      --.||+|..||..+++.+..+
T Consensus       267 NFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       267 NFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             ecCCceeEEecCCCCceeeee
Confidence            556999999999988876544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.35  E-value=25  Score=31.73  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=63.9

Q ss_pred             CEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCeeEEEEccCCCEEEEEC-----C---eEEEE-ECCC----CeeeE-
Q 008058          130 SCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGISCMAVSSDGKMLATAA-----G---QLKTF-NCSD----HKKMQ-  193 (579)
Q Consensus       130 ~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g---~i~vw-d~~~----~~~~~-  193 (579)
                      +.|+.+...+.|.+|++.  ..+...+|.. -+.|..+.++..|+++++--     .   .+++| +.+.    .++++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455554667789999988  3355666664 37899999999999999864     3   56665 2221    12222 


Q ss_pred             EeecC---------------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          194 KFSGH---------------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       194 ~~~~h---------------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .+-||                     ..++.+++..|....|+.++  ++.+.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEE
Confidence            22222                     23456777777544555554  6789999876543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.86  E-value=51  Score=36.83  Aligned_cols=112  Identities=10%  Similarity=-0.009  Sum_probs=73.8

Q ss_pred             CCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc-----eeeEeecCCC----------CeeEEEEccCCCEEEEEC-Ce
Q 008058          118 GGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS-----LLGKFRASTK----------GISCMAVSSDGKMLATAA-GQ  180 (579)
Q Consensus       118 ~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~~~~~----------~v~~l~~~p~g~~l~~~~-g~  180 (579)
                      .+..+++|+| +.+.|+.....|.-.+||+..+.     .........+          .-..+.|.++-+.|+.++ ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~  225 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK  225 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc
Confidence            3678999999 44579999999999999992111     1111111111          234788988888888888 89


Q ss_pred             EEEEECCCCeeeEEe--ecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCC
Q 008058          181 LKTFNCSDHKKMQKF--SGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       181 i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +.++|+++......+  ......|..+.-+|.  +..|+-+   ...|...++...
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~~  278 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKSS  278 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccCC
Confidence            999999987553212  234466888887776  3333332   356777787763

These proteins are found in fungi.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.85  E-value=25  Score=31.39  Aligned_cols=157  Identities=12%  Similarity=0.065  Sum_probs=78.0

Q ss_pred             EEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEE--C-CeEEEEECCCCeeeEEee
Q 008058          122 AISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATA--A-GQLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       122 ~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~--~-g~i~vwd~~~~~~~~~~~  196 (579)
                      ++.+. +|.++.+.+.  ...|++||+.+|+.+..-+-....+..--...-|..+..-  . |.-..||.++-+++..+.
T Consensus        50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            34443 4556666654  3479999999998776543221122111111123333322  2 777888888877776654


Q ss_pred             cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE
Q 008058          197 GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC  276 (579)
Q Consensus       197 ~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i  276 (579)
                       ..+.=..++  .|+..|+.+. +..+++.-|..+-.......+.--..+...++-.-+      -+|...|-.=.+..|
T Consensus       129 -y~GeGWgLt--~d~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~------VdG~lyANVw~t~~I  198 (262)
T COG3823         129 -YEGEGWGLT--SDDKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW------VDGELYANVWQTTRI  198 (262)
T ss_pred             -cCCcceeee--cCCcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceee------eccEEEEeeeeecce
Confidence             233334443  4455555543 355666666655433321111111111112222222      255555555555566


Q ss_pred             EEEECCCceeecc
Q 008058          277 YIWYGQNIEELRN  289 (579)
Q Consensus       277 ~iwd~~~~~~~~~  289 (579)
                      -.-+.++|+.+..
T Consensus       199 ~rI~p~sGrV~~w  211 (262)
T COG3823         199 ARIDPDSGRVVAW  211 (262)
T ss_pred             EEEcCCCCcEEEE
Confidence            6666666665543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.74  E-value=0.15  Score=50.64  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=93.6

Q ss_pred             ceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            8 DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         8 ~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+...|-|.+.-++.++.+..+..||-. |+...+..                   .....-.++|...        +..
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-------------------~tg~aldm~wDke--------gdv   88 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-------------------PTGKALDMAWDKE--------GDV   88 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-------------------CchhHhhhhhccc--------cch
Confidence            3456788877668888888888889854 44333221                   1112223455442        145


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      .++.+-..+.+.+||+.+.... ++..+-+..-.-+.|++-+..++.+...|.+.+++..+.+.+-..-.|...++++++
T Consensus        89 lavlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av  167 (615)
T KOG2247|consen   89 LAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV  167 (615)
T ss_pred             hhhhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence            5777888899999999865432 111111222222678888888888889999999998776665555448889999999


Q ss_pred             ccCCCEEEEEC
Q 008058          168 SSDGKMLATAA  178 (579)
Q Consensus       168 ~p~g~~l~~~~  178 (579)
                      .+.+..+..+.
T Consensus       168 ~lEd~vil~dc  178 (615)
T KOG2247|consen  168 TLEDYVILCDC  178 (615)
T ss_pred             cccceeeecCc
Confidence            99876665554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.72  E-value=13  Score=39.59  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCC
Q 008058          179 GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       179 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      -.|+||+. +|+.+.++....+.+-.+.|+.+...++. . .||++.+|++........ .+..-.....+..|..|.  
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v-~-k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~--  137 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICV-Q-KDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFH--  137 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEE-e-ccceEEEeecchhhhccc-ccccccccCceeEEEEec--
Confidence            56888886 56666665544558889999988766554 4 799999999977654321 011111233455666663  


Q ss_pred             cccCCCcEEEEEEcCCeEEEE
Q 008058          259 GVDDAGLYVLAISETGVCYIW  279 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iw  279 (579)
                          +|  +++-..+|++.+-
T Consensus       138 ----~G--Vavlt~~g~v~~i  152 (829)
T KOG2280|consen  138 ----NG--VAVLTVSGQVILI  152 (829)
T ss_pred             ----Cc--eEEEecCCcEEEE
Confidence                44  3444455655544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.45  E-value=4.1  Score=25.56  Aligned_cols=38  Identities=11%  Similarity=0.063  Sum_probs=26.9

Q ss_pred             cCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEE
Q 008058          169 SDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       169 p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~  207 (579)
                      |+++.++++.   ++|.++|..+++.+..+..... ...+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence            5778777765   7999999999888887765322 234444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=85.26  E-value=20  Score=29.60  Aligned_cols=112  Identities=7%  Similarity=0.007  Sum_probs=61.8

Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCC--------eeeEEeecCCCCEEEEEEec-----CCCEEEEEecCCCeEEEEEcC
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDH--------KKMQKFSGHPGAVRFMTFSD-----NGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~-----~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      .|......|+++.  |.|.|++....        ..+..+. -...|++++-.+     +...|+.++  ...+-.||+.
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt--~t~llaYDV~   81 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT--QTSLLAYDVE   81 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec--cceEEEEEcc
Confidence            4555555666665  89999976532        2333343 456677775443     234566664  6789999998


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .....   ....+......+.+-.+.     ....-++..+.+..|.-||.+-.+...
T Consensus        82 ~N~d~---Fyke~~DGvn~i~~g~~~-----~~~~~l~ivGGncsi~Gfd~~G~e~fW  131 (136)
T PF14781_consen   82 NNSDL---FYKEVPDGVNAIVIGKLG-----DIPSPLVIVGGNCSIQGFDYEGNEIFW  131 (136)
T ss_pred             cCchh---hhhhCccceeEEEEEecC-----CCCCcEEEECceEEEEEeCCCCcEEEE
Confidence            87644   112222222333333332     223334444555677777766555443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=83.94  E-value=32  Score=32.85  Aligned_cols=93  Identities=11%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeec-----CCCCeeE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRA-----STKGISC  164 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~  164 (579)
                      ..|.+||..+.+.. .+-.+-.+.|+++.|..+.+.++.|.      ....+..||+.+.. ...+..     -.++|..
T Consensus        16 ~~lC~yd~~~~qW~-~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   16 PGLCLYDTDNSQWS-SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CEEEEEECCCCEee-cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence            34899998887765 33344567899999986666666664      35568889986553 333333     1357777


Q ss_pred             EEEcc-CCCEEE-EEC-----CeEEEEECCCCe
Q 008058          165 MAVSS-DGKMLA-TAA-----GQLKTFNCSDHK  190 (579)
Q Consensus       165 l~~~p-~g~~l~-~~~-----g~i~vwd~~~~~  190 (579)
                      +.+.. |+..+. .|.     ..|..||-.+..
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~  126 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS  126 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence            77743 443344 332     345666544433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.63  E-value=71  Score=34.71  Aligned_cols=80  Identities=10%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             CCCEEEEEEe--cCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCe
Q 008058          199 PGAVRFMTFS--DNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGV  275 (579)
Q Consensus       199 ~~~v~~l~~~--~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~  275 (579)
                      ...+++++++  ...+++|+++ ....|.||-........ ....... ...-+-++.|-+...+++|. +|++++-.|.
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSs-Ns~~VTVFaf~l~~~r~-~~~~s~~-~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~  239 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSS-NSQEVTVFAFALVDERF-YHVPSHQ-HSHNIPNVSFLDDDLDPNGHVKVVATDISGE  239 (717)
T ss_pred             CCceeEEEEEecCcceEEEEec-CCceEEEEEEecccccc-ccccccc-cccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence            3468899998  7777777665 67778887665532110 0111111 22334455555554445565 7888888999


Q ss_pred             EEEEEC
Q 008058          276 CYIWYG  281 (579)
Q Consensus       276 i~iwd~  281 (579)
                      +.+|++
T Consensus       240 v~~~~I  245 (717)
T PF08728_consen  240 VWTFKI  245 (717)
T ss_pred             EEEEEE
Confidence            988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.62  E-value=9.6  Score=33.45  Aligned_cols=25  Identities=16%  Similarity=0.314  Sum_probs=18.7

Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEE
Q 008058          161 GISCMAVSSDGKMLATAAGQLKTFN  185 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~g~i~vwd  185 (579)
                      ...+++||.||++.++++..|+|.+
T Consensus         6 ~~~~l~WS~Dg~laV~t~~~v~IL~   30 (173)
T PF12657_consen    6 CPNALAWSEDGQLAVATGESVHILD   30 (173)
T ss_pred             CCcCeeECCCCCEEEEcCCeEEEEe
Confidence            3467888888877777777788873

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.57  E-value=32  Score=33.85  Aligned_cols=109  Identities=11%  Similarity=0.173  Sum_probs=57.8

Q ss_pred             CeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe----ecCCCCEEEEEEecC---CCEEEEEecCC--------
Q 008058          161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF----SGHPGAVRFMTFSDN---GKYVLSSAVGE--------  221 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~---~~~~----~~h~~~v~~l~~~~~---~~~l~s~s~~d--------  221 (579)
                      ..++|+|.|||+++++-- |.|++++ ..+..   +..+    .........++++|+   ..+|.......        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            357899999999988877 9999999 44433   3332    223456789999994   23333333211        


Q ss_pred             CeEEEEEcCCC--ccccceeEE-eeec---CceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          222 RYIALWRTDGV--KKQSASCVL-AMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       222 ~~i~vwd~~~~--~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                      ..|.-|.....  .....+.+. ....   .......+.|.     |||.+.++.+..+.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-----pDG~LYvs~G~~~~  136 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-----PDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE------TTSEEEEEEB-TTT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-----CCCcEEEEeCCCCC
Confidence            24555555443  111111121 1111   22333446666     88876666666544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.55  E-value=52  Score=33.08  Aligned_cols=13  Identities=15%  Similarity=0.199  Sum_probs=9.9

Q ss_pred             eEEEEEccCCeEE
Q 008058           97 DVLALAVSAGQLK  109 (579)
Q Consensus        97 ~i~iwd~~~~~~~  109 (579)
                      .+..||+.+++..
T Consensus       107 ~v~~YD~~~n~W~  119 (376)
T PRK14131        107 DVYKYDPKTNSWQ  119 (376)
T ss_pred             cEEEEeCCCCEEE
Confidence            4888998887654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.50  E-value=43  Score=38.41  Aligned_cols=72  Identities=8%  Similarity=-0.000  Sum_probs=42.3

Q ss_pred             CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEE
Q 008058          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCY  277 (579)
Q Consensus       198 h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~  277 (579)
                      +..++.+..+.......+..  .-+.+-+|+........   .+...+...       .     +++..++++..||.+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~-----~~~~~~v~~h~Dgs~~  259 (993)
T KOG1983|consen  197 IEYESLQVLYYSPTKILIGF--NRGLVVIKDRASKYVQS---AYLPNGQLE-------S-----RDGSHFVSYHTDGSYA  259 (993)
T ss_pred             cccccceeeeecCCCcceee--eeeeeeehhcccccchh---hcccccccC-------c-----cCCceEEEEEecCCEE
Confidence            44555555555444444433  35667777655443221   011111111       3     7889999999999999


Q ss_pred             EEECCCcee
Q 008058          278 IWYGQNIEE  286 (579)
Q Consensus       278 iwd~~~~~~  286 (579)
                      +||...+..
T Consensus       260 fWd~s~g~~  268 (993)
T KOG1983|consen  260 FWDVSSGKL  268 (993)
T ss_pred             eeecCCCce
Confidence            999988754

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=81.95  E-value=94  Score=34.99  Aligned_cols=170  Identities=12%  Similarity=0.083  Sum_probs=90.5

Q ss_pred             EEEEEccCCeEEEEecCCCC---CCEEEEEEccCCCE-EE-EEe-----------CCCcEEEEeCC-CCceeeEeec--C
Q 008058           98 VLALAVSAGQLKWRLSDCHP---GGVSAISFATHGSC-IY-SAG-----------ADGMVCEIDPL-TGSLLGKFRA--S  158 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~-l~-s~~-----------~dg~v~iwd~~-~~~~~~~~~~--~  158 (579)
                      |++.|..+++.+..+..+..   -.|.++.|+..... +. .|.           .+|.++.|++- .|+.+.-+..  -
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            88888888877655532222   24666677654333 33 221           23446666643 3342222211  1


Q ss_pred             CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCe-EEEEEcCCCcc
Q 008058          159 TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY-IALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~-i~vwd~~~~~~  234 (579)
                      .+.|  .+..|-+.++++|- ..+++||+-..++++...  .....|+.+.+.  +..++.+-..++. ...|+-...+.
T Consensus       935 ~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  935 PGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             Cccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence            2244  34556555666665 799999998877765543  234556777664  4456666544442 33444444332


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      .    ++.-+.-...+....+      -|...++.+..=|.+.+-.+
T Consensus      1011 ~----~fadD~~pR~Vt~~~~------lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1011 I----VFADDPVPRHVTALEL------LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             E----EEeCCCccceeeEEEE------ecCCceeeccccCcEEEEEC
Confidence            2    2222222333444444      35567777777777777654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.85  E-value=80  Score=36.39  Aligned_cols=139  Identities=10%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--------ccCCCEEEEEeCCCcEEEEeCC----CCce-----eeE
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--------ATHGSCIYSAGADGMVCEIDPL----TGSL-----LGK  154 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~l~s~~~dg~v~iwd~~----~~~~-----~~~  154 (579)
                      .+.|..+.+|+..++.....+ .+-...|..+..        .|.=++++.-+.--.|.++-+.    ++..     ..+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence            356788999999986544333 344444554432        3333343333334445554332    1111     012


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC-CeEEEE--ECCCC---e-e----------------eEEee-cCCCCEEEEEEecC
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA-GQLKTF--NCSDH---K-K----------------MQKFS-GHPGAVRFMTFSDN  210 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vw--d~~~~---~-~----------------~~~~~-~h~~~v~~l~~~~~  210 (579)
                      +...+..|+|+....+|+.+.+|- |.|+=.  ....+   + +                +..+. .+..+|..+.+...
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            222345789999889999999987 744322  22111   1 1                11233 56789999999887


Q ss_pred             CCEEEEEecCCCeEEEEEcCCC
Q 008058          211 GKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...+.+-+ ..++|.+|++...
T Consensus       254 R~IlY~ls-ek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  254 RNILYVLS-EKGTVSAYDIGGN  274 (1311)
T ss_pred             cceeeeec-cCceEEEEEccCC
Confidence            77777776 7899999999873

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=81.04  E-value=54  Score=31.52  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=75.4

Q ss_pred             cEEEEeCCCCceeeEeecC------CCCeeEEEEccCC-----CEEEEEC---CeEEEEECCCCeeeEEeecCC------
Q 008058          140 MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDG-----KMLATAA---GQLKTFNCSDHKKMQKFSGHP------  199 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g-----~~l~~~~---g~i~vwd~~~~~~~~~~~~h~------  199 (579)
                      ++.+||+.+++.++++.-+      ...+..+.+....     .++..++   +.|.|+|+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5788999999888876532      3467778887622     3555554   689999999987665543221      


Q ss_pred             -------------CCEEEEEEec---CCCEEEEEecCCCeEEEEEcCCC-----cccc----ceeEEeeecCceeeEeEE
Q 008058          200 -------------GAVRFMTFSD---NGKYVLSSAVGERYIALWRTDGV-----KKQS----ASCVLAMEHPAVFMDCRC  254 (579)
Q Consensus       200 -------------~~v~~l~~~~---~~~~l~s~s~~d~~i~vwd~~~~-----~~~~----~~~~~~~~~~~~~~~~~~  254 (579)
                                   ..+..++.+|   +++.|........  ++|.+.+.     ....    ...+..+...........
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                         2255555554   5566666543222  34433221     1100    001112222122334455


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          255 IDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      .+     ++|...++--..+.|..|+..+
T Consensus       193 ~D-----~~G~ly~~~~~~~aI~~w~~~~  216 (287)
T PF03022_consen  193 ID-----PNGNLYFTDVEQNAIGCWDPDG  216 (287)
T ss_dssp             EE-----TTTEEEEEECCCTEEEEEETTT
T ss_pred             EC-----CCCcEEEecCCCCeEEEEeCCC
Confidence            54     7788887878888888898654

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=80.88  E-value=7.3  Score=38.78  Aligned_cols=144  Identities=20%  Similarity=0.327  Sum_probs=81.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEE-EecCCCCC----CEE-EEEEccCCCEEEEEeCCCcEEEE-eCCCCc-----eee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKW-RLSDCHPG----GVS-AISFATHGSCIYSAGADGMVCEI-DPLTGS-----LLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~-~~~~~h~~----~V~-~l~~~~~~~~l~s~~~dg~v~iw-d~~~~~-----~~~  153 (579)
                      ++.+++-+. .++.++++.+..... ++.....+    .|+ ++..-..|..+..++.||.|.-| |.+.+.     .++
T Consensus       232 g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R  310 (733)
T COG4590         232 GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIR  310 (733)
T ss_pred             CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeee
Confidence            666666665 678888876654321 12111111    122 12222345668889999999888 554332     223


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .++-...++..+.-..+.+-+++-+  |++.++.....+.+. +..-...+..++++|++.++++-  +.|.++++.+++
T Consensus       311 ~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~~~Ll~e--~~gki~~~~l~N  387 (733)
T COG4590         311 NFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQAYLLSE--DQGKIRLAQLEN  387 (733)
T ss_pred             ccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCcccchheee--cCCceEEEEecC
Confidence            3332333444443333344455555  777777654444332 22223356678999999999874  578899999887


Q ss_pred             Cc
Q 008058          232 VK  233 (579)
Q Consensus       232 ~~  233 (579)
                      ..
T Consensus       388 r~  389 (733)
T COG4590         388 RN  389 (733)
T ss_pred             CC
Confidence            64

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.52  E-value=78  Score=33.05  Aligned_cols=102  Identities=12%  Similarity=0.194  Sum_probs=51.6

Q ss_pred             CeEEEEEccCCeEEEEec-CCC-CCCEEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCceeeEeec--C
Q 008058           96 GDVLALAVSAGQLKWRLS-DCH-PGGVSAISFATHGSCIYSAGA-------------DGMVCEIDPLTGSLLGKFRA--S  158 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~-~~h-~~~V~~l~~~~~~~~l~s~~~-------------dg~v~iwd~~~~~~~~~~~~--~  158 (579)
                      +.+..+|+. |+.+.... .+. ...-.++.+-|+|++|+.+..             ...|..+| .+|+.+..+..  |
T Consensus       167 ~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~  244 (477)
T PF05935_consen  167 NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDH  244 (477)
T ss_dssp             TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGT
T ss_pred             CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHh
Confidence            778888875 44433321 110 112356778899999887762             12366667 67776665431  1


Q ss_pred             -----------------------C--CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC
Q 008058          159 -----------------------T--KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP  199 (579)
Q Consensus       159 -----------------------~--~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~  199 (579)
                                             .  --++++.+.+ ++.+++++-  ..|...|.++++....+..|.
T Consensus       245 ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  245 LDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             S-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             CCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence                                   0  1467888888 555555554  578888877777776665544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.43  E-value=0.23  Score=49.31  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=91.1

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeec-CCCCeeE
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRA-STKGISC  164 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~  164 (579)
                      .-+++++.+..+..||-...... ..  ..++...+++|..+|..+ +.+-..+.+++||+.+... +.+.. ....-.-
T Consensus        47 ~nlavaca~tiv~~YD~agq~~l-e~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sl  122 (615)
T KOG2247|consen   47 HNLAVACANTIVIYYDKAGQVIL-EL--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSL  122 (615)
T ss_pred             CceehhhhhhHHHhhhhhcceec-cc--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHH
Confidence            33888888888999986543332 22  234566778888877764 4455778999999865421 11111 1111122


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      +.|++.+..++.+.  |.+.+++..+.+.+-..-.|...++++++.+.+. .+.++ .|..+.+-
T Consensus       123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~d-cd~~L~v~  185 (615)
T KOG2247|consen  123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCD-CDNTLSVT  185 (615)
T ss_pred             HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecC-cHHHHHHh
Confidence            78899888888888  9999999988777666555999999999999874 44444 46555443

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=80.40  E-value=52  Score=30.91  Aligned_cols=133  Identities=12%  Similarity=0.167  Sum_probs=76.1

Q ss_pred             eEEEEEccCCeEE-EEecCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-CeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLK-WRLSDCH-PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~-~~~~~~h-~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~~l~~~p~g~~  173 (579)
                      .|.-.|.++.+.. ..+...| ........|.+.|+.-+++. .|.---.|..+ ..+..|....+ ..+.|+..|||..
T Consensus       125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsv  202 (353)
T COG4257         125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSV  202 (353)
T ss_pred             eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcE
Confidence            4555555555443 1222222 35678889999998877774 33222223322 23444544433 6688999999998


Q ss_pred             EEEEC--CeEEEEECCCCeeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          174 LATAA--GQLKTFNCSDHKKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       174 l~~~~--g~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      -++.-  +.|-..|..++.. ..+.   .....-..+--+|.|+.-++.. ..+.+..+|.....
T Consensus       203 wyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~s  265 (353)
T COG4257         203 WYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTS  265 (353)
T ss_pred             EEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccccc
Confidence            88744  6677767665521 2221   2122334455567777766654 57778888766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.76
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.46
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.45
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.28
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.1
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.1
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.07
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.95
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.92
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.92
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.84
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.75
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.75
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.73
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.67
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.53
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.44
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.41
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.32
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.32
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.12
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.1
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.98
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.88
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.86
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.84
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.84
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.8
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.68
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.67
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.65
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.47
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.46
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.45
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.44
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.38
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.31
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.29
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.14
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.12
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.09
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.86
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.78
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.77
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.71
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.6
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.53
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.51
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.47
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.19
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.14
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.1
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.06
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.95
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.95
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.93
3ott_A	758	Two-component system sensor histidine kinase; beta	95.39
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.19
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.8
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.73
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.72
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.51
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.26
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.25
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.96
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.59
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.51
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.17
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.94
3ott_A	758	Two-component system sensor histidine kinase; beta	90.69
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	88.3
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	82.95
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	81.16

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8e-42  Score=348.76  Aligned_cols=281  Identities=15%  Similarity=0.267  Sum_probs=248.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++|+.||+|+|||+.+++....+++|...+..+.|+++                       
T Consensus       107 h~~~V--~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-----------------------  161 (410)
T 1vyh_C          107 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------  161 (410)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-----------------------
Confidence            35678  56699999999999999999999999999998888877766665555554                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.||.|++||+.+++++..+ .+|...|.+++|+|++++|++|+.|++|++||+.++.++.++.+|...
T Consensus       162 ----~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence                789999999999999999999887655 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--------------------CCEEEEEec
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--------------------GKYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--------------------~~~l~s~s~  219 (579)
                      |.+++++|+|+++++|+  +.|++||+++++....+.+|...|.+++|+|+                    +.++++++ 
T Consensus       237 v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-  315 (410)
T 1vyh_C          237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  315 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe-
Confidence            99999999999999998  89999999999999999999999999999996                    66888887 


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|+.|++||++++.     ++..+..+...+..+.|+     |+|.+|++++.||+|++||+.+++.+            
T Consensus       316 ~D~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~~-----~~g~~l~s~s~D~~i~vwd~~~~~~~------------  373 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCM------------  373 (410)
T ss_dssp             TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCC------------
T ss_pred             CCCeEEEEECCCCc-----eEEEEECCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCceE------------
Confidence            79999999999876     345555666677788887     99999999999999999997654321            


Q ss_pred             cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                                 ..+.+|...|.+++|+|++.++ +|||.|+++++|++
T Consensus       374 -------------------------------------------~~~~~h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          374 -------------------------------------------KTLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWEC  409 (410)
T ss_dssp             -------------------------------------------EEEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC-
T ss_pred             -------------------------------------------EEEcCCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEeC
Confidence                                                       1345788899999999999999 99999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.3e-41  Score=334.57  Aligned_cols=280  Identities=15%  Similarity=0.196  Sum_probs=240.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|||++|++|+.||+|+|||..++.....+..|...+..+.|+++                       
T Consensus        54 H~~~v--~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (340)
T 1got_B           54 HLAKI--YAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-----------------------
T ss_pred             CCCce--EEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-----------------------
Confidence            35678  56699999999999999999999999999998888776665555555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++|+.|+.|++|++.+++   .......+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|
T Consensus       109 ----~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h  183 (340)
T 1got_B          109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             ----CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence                8899999999999999998753   22233468999999999998875 889999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      ...|.+++|+|+++++++|+  +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||++.++.. 
T Consensus       184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~~~-  261 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCcEE-
Confidence            99999999999999999998  9999999999999999999999999999999999999998 7999999999987533 


Q ss_pred             ceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          237 ASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       237 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                          ....++  ...+..+.|+     |+|.+|++|+.||.|++||..+++.+                           
T Consensus       262 ----~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~---------------------------  305 (340)
T 1got_B          262 ----MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRA---------------------------  305 (340)
T ss_dssp             ----EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred             ----EEEccCCcccceEEEEEC-----CCCCEEEEECCCCeEEEEEcccCcEe---------------------------
Confidence                233333  2356778887     99999999999999999997654321                           


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                  ..+.+|...|.+++|+|||.+| +|||.|+++++|+
T Consensus       306 ----------------------------~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~i~iWd  340 (340)
T 1got_B          306 ----------------------------GVLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             ----------------------------EEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ----------------------------eEeecCCCcEEEEEEcCCCCEE-EEEcCCccEEecC
Confidence                                        1345788899999999999999 9999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.8e-41  Score=359.32  Aligned_cols=346  Identities=17%  Similarity=0.186  Sum_probs=263.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccc--------------------
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLE--------------------   60 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------   60 (579)
                      +.+|  .+++|||||++||+|+.||+|+|||+.++  .....+..|...+..+.|+++-.                    
T Consensus        59 ~~~v--~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           59 SHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCce--EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence            4678  55699999999999999999999998754  35667888888999888887610                    


Q ss_pred             -------cccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE
Q 008058           61 -------REHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY  133 (579)
Q Consensus        61 -------~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~  133 (579)
                             .+| ...+.+++|.|..        ...|++|+.|+.|++||..++++...+ .+|...|++++|+|+|++|+
T Consensus       137 ~~~~~~l~gh-~~~v~~v~f~p~~--------~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~la  206 (611)
T 1nr0_A          137 GTSNGNLTGQ-ARAMNSVDFKPSR--------PFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSLFA  206 (611)
T ss_dssp             CCBCBCCCCC-SSCEEEEEECSSS--------SCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCcceecCC-CCCceEEEECCCC--------CeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCEEE
Confidence                   011 1234455555432        346999999999999999998887665 68999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCceeeEee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-----------
Q 008058          134 SAGADGMVCEIDPLTGSLLGKFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-----------  193 (579)
Q Consensus       134 s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-----------  193 (579)
                      +++.|++|++||+.+++.+..+.       +|.+.|.+++|+|+|++|++++  ++|++||+++++.+.           
T Consensus       207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~  286 (611)
T 1nr0_A          207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ  286 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred             EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence            99999999999999999888884       7999999999999999999998  899999999876543           


Q ss_pred             --------------------------------EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce---
Q 008058          194 --------------------------------KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS---  238 (579)
Q Consensus       194 --------------------------------~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~---  238 (579)
                                                      .+.+|...|++++|+|+|++|++++ .|++|++||+.++......   
T Consensus       287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~~~~~~~~~  365 (611)
T 1nr0_A          287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD-AEGHINSWDISTGISNRVFPDV  365 (611)
T ss_dssp             EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEECSSCS
T ss_pred             eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCceeeecccC
Confidence                                            3357999999999999999999998 7999999999865421000   


Q ss_pred             ---eE-----------E--------------------------e---------ee-------------------------
Q 008058          239 ---CV-----------L--------------------------A---------ME-------------------------  244 (579)
Q Consensus       239 ---~~-----------~--------------------------~---------~~-------------------------  244 (579)
                         .+           .                          .         +.                         
T Consensus       366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~  445 (611)
T 1nr0_A          366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV  445 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred             CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence               00           0                          0         00                         


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccCCceEEeeecccCcccccccchhhhhccccce
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDI  322 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  322 (579)
                      .+...+.+++|+     |+|++|++|+.||+|++||+.++...  .. ..+...+.+.. |+|+++    .+++++.|+.
T Consensus       446 ~~~~~v~~va~s-----pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~-fspdg~----~las~s~d~~  514 (611)
T 1nr0_A          446 PISYNSSCVALS-----NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA-FSNNGA----FLVATDQSRK  514 (611)
T ss_dssp             ECSSCEEEEEEC-----TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-ECTTSS----EEEEEETTSC
T ss_pred             ecCCCceEEEEe-----CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-ECCCCC----EEEEEcCCCC
Confidence            001123456666     99999999999999999999876431  11 11222222222 788888    8999999887


Q ss_pred             ecCCceEEEEEeCCCCCceeEE--EecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          323 VKPASVHTFVAYGLLLKPSFQK--ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       323 ~~~~~~~~~~~~g~~~~~~~~~--~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      ++.++..       ........  ..+|...|.+++|||||++| +|+|.|+++++|++.
T Consensus       515 v~~w~~~-------~~~~~~~~~~~~~H~~~V~~v~fspdg~~l-asgs~D~~v~lW~~~  566 (611)
T 1nr0_A          515 VIPYSVA-------NNFELAHTNSWTFHTAKVACVSWSPDNVRL-ATGSLDNSVIVWNMN  566 (611)
T ss_dssp             EEEEEGG-------GTTEESCCCCCCCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             EEEEEcC-------CCCceeeeeeeeecccceeEEEECCCCCEE-EEEECCCcEEEEECC
Confidence            6664421       00111111  23499999999999999999 999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=326.50  Aligned_cols=281  Identities=14%  Similarity=0.162  Sum_probs=241.2

Q ss_pred             CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      +.++|  .+++|+|+    +++|++|+.|++|+||++.+++.  ...+.+|...+..+.++++                 
T Consensus        31 H~~~V--~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-----------------   91 (321)
T 3ow8_A           31 HDDAI--WSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-----------------   91 (321)
T ss_dssp             SSSCE--EEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-----------------
T ss_pred             CCCcE--EEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-----------------
Confidence            45788  56699985    67999999999999999987764  3456666555554444443                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                                +..+++++.|+.|++||+.+++.+..+ ..|...+.+++|+|++++|++++.||.|++||+.+++....+
T Consensus        92 ----------~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~  160 (321)
T 3ow8_A           92 ----------LPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL  160 (321)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence                      778999999999999999999988666 568889999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ..+...|.+++|+|+|++|++|+  |.|++||+++++.+.++.+|..+|.+++|+|++++|++++ .|+.|++||++.++
T Consensus       161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~  239 (321)
T 3ow8_A          161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHAN  239 (321)
T ss_dssp             ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred             cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence            99999999999999999999998  8999999999999999999999999999999999999987 79999999998875


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      .     ...+..+...+..+.|+     |++.+|++++.||+|++||+.+++.+.                         
T Consensus       240 ~-----~~~~~~h~~~v~~~~~s-----p~~~~l~s~s~D~~v~iwd~~~~~~~~-------------------------  284 (321)
T 3ow8_A          240 L-----AGTLSGHASWVLNVAFC-----PDDTHFVSSSSDKSVKVWDVGTRTCVH-------------------------  284 (321)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEE-------------------------
T ss_pred             e-----eEEEcCCCCceEEEEEC-----CCCCEEEEEeCCCcEEEEeCCCCEEEE-------------------------
Confidence            3     34555666677788888     999999999999999999987654322                         


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                    ++.+|...|.+++|+|||.+| +|++.|+++++|+.
T Consensus       285 ------------------------------~~~~h~~~v~~v~~s~~g~~l-~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          285 ------------------------------TFFDHQDQVWGVKYNGNGSKI-VSVGDDQEIHIYDC  319 (321)
T ss_dssp             ------------------------------EECCCSSCEEEEEECTTSSEE-EEEETTCCEEEEEC
T ss_pred             ------------------------------EEcCCCCcEEEEEECCCCCEE-EEEeCCCeEEEEeC
Confidence                                          334677789999999999999 99999999999986

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=4.7e-40  Score=328.74  Aligned_cols=282  Identities=15%  Similarity=0.190  Sum_probs=239.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++||+|+.||+|+|||..++.....+..+...+....|+++                       
T Consensus        63 H~~~V--~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-----------------------  117 (354)
T 2pbi_B           63 HGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-----------------------  117 (354)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-----------------------
T ss_pred             CCCeE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-----------------------
Confidence            45678  66699999999999999999999999999988888766655555555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                          +..+++|+.|+.+++|++....      .... ..+|...|.++.|+|++..|++++.|++|++||+.+++.+..+
T Consensus       118 ----g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~  192 (354)
T 2pbi_B          118 ----GCAIACGGLDNKCSVYPLTFDKNENMAAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF  192 (354)
T ss_dssp             ----SSEEEEESTTSEEEEEECCCCTTCCSGGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----CCEEEEeeCCCCEEEEEEecccccccccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE
Confidence                8889999999999999986431      1222 2479999999999999999999999999999999999999999


Q ss_pred             ecCCCCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          156 RASTKGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       156 ~~~~~~v~~l~~~p--~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .+|...|.+++|+|  +|++|++|+  |.|++||+++++++..+.+|...|++++|+|++.+|++++ .|++|++||++.
T Consensus       193 ~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~v~lwd~~~  271 (354)
T 2pbi_B          193 HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS-DDATCRLYDLRA  271 (354)
T ss_dssp             ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Confidence            99999999999988  578999988  9999999999999999999999999999999999999998 799999999988


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccc
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      .+..   ..+........+..+.|+     |+|.+|++++.||.|++||+.+++.+.                       
T Consensus       272 ~~~~---~~~~~~~~~~~~~~~~~s-----~~g~~l~~g~~d~~i~vwd~~~~~~~~-----------------------  320 (354)
T 2pbi_B          272 DREV---AIYSKESIIFGASSVDFS-----LSGRLLFAGYNDYTINVWDVLKGSRVS-----------------------  320 (354)
T ss_dssp             TEEE---EEECCTTCCSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTCSEEE-----------------------
T ss_pred             CcEE---EEEcCCCcccceeEEEEe-----CCCCEEEEEECCCcEEEEECCCCceEE-----------------------
Confidence            7533   222222223345677787     999999999999999999986553221                       


Q ss_pred             hhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          312 AAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       312 ~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                      .+.+|...|.+++|+|||.+| +|+|.|+++++|+
T Consensus       321 --------------------------------~l~~h~~~v~~l~~spdg~~l-~sgs~D~~v~vW~  354 (354)
T 2pbi_B          321 --------------------------------ILFGHENRVSTLRVSPDGTAF-CSGSWDHTLRVWA  354 (354)
T ss_dssp             --------------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------EEECCCCcEEEEEECCCCCEE-EEEcCCCCEEecC
Confidence                                            334788899999999999999 9999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6.5e-40  Score=352.19  Aligned_cols=325  Identities=14%  Similarity=0.146  Sum_probs=258.4

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..+|  .+++|+|++. +|++|+.|++|++||..++++...+.+|...+..+.|+++                       
T Consensus       147 ~~~v--~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspd-----------------------  201 (611)
T 1nr0_A          147 ARAM--NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-----------------------  201 (611)
T ss_dssp             SSCE--EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCc--eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCC-----------------------
Confidence            4567  5569999997 5999999999999999999999999888877777777666                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecC------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-  154 (579)
                          +.+|++|+.|+.|++||+.+++....+..      +|.+.|++++|+|+|++|++++.|++|++||+.+++.+.+ 
T Consensus       202 ----g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          202 ----GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ----CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence                88999999999999999999988766633      7999999999999999999999999999999988765443 


Q ss_pred             ------------------------------------------eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe
Q 008058          155 ------------------------------------------FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK  190 (579)
Q Consensus       155 ------------------------------------------~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~  190 (579)
                                                                +.+|...|++++|+|+|++|++++  +.|++||+.+++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                                                      346888999999999999999998  899999998764


Q ss_pred             eeEEe-e-------------------------------------------------------------------------
Q 008058          191 KMQKF-S-------------------------------------------------------------------------  196 (579)
Q Consensus       191 ~~~~~-~-------------------------------------------------------------------------  196 (579)
                      ....+ .                                                                         
T Consensus       358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~  437 (611)
T 1nr0_A          358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY  437 (611)
T ss_dssp             EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence            43221 0                                                                         


Q ss_pred             --------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEE
Q 008058          197 --------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       197 --------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                              .|...+.+++|+|+|+++++++ .|++|++||+..+...   .... ..+...+..+.|+     |+|++|+
T Consensus       438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs-~D~~v~lwd~~~~~~~---~~~~-~~h~~~v~~v~fs-----pdg~~la  507 (611)
T 1nr0_A          438 SHGKLTEVPISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKT-IVHPAEITSVAFS-----NNGAFLV  507 (611)
T ss_dssp             ETTEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEE-EECSSCEEEEEEC-----TTSSEEE
T ss_pred             eCCceeeeecCCCceEEEEeCCCCEEEEeC-CCCeEEEEEccCCcee---eeec-cCCCCceEEEEEC-----CCCCEEE
Confidence                    1234577899999999999988 7999999999875422   2233 3344567788888     9999999


Q ss_pred             EEEcCCeEEEEECCC-ceeecc--cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE
Q 008058          269 AISETGVCYIWYGQN-IEELRN--TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI  345 (579)
Q Consensus       269 s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  345 (579)
                      +++.|++|++|++.+ ++.+..  ...+...+.+.. |+|+++    .+++++.|+.+++|+.     . .........+
T Consensus       508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~-fspdg~----~lasgs~D~~v~lW~~-----~-~~~~~~~~~~  576 (611)
T 1nr0_A          508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPDNV----RLATGSLDNSVIVWNM-----N-KPSDHPIIIK  576 (611)
T ss_dssp             EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTTSS----EEEEEETTSCEEEEET-----T-CTTSCCEEET
T ss_pred             EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEE-ECCCCC----EEEEEECCCcEEEEEC-----C-Ccccccchhh
Confidence            999999999999987 555433  111333333333 788888    8999999987776541     1 1011112455


Q ss_pred             ecC-CCCcEEEeecCCcceeeccccceecccceee
Q 008058          346 LVN-SGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       346 ~~h-~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      .+| ...|.+++|+|||+ | +|++.|+++++|++
T Consensus       577 ~~h~~~~v~~v~fs~d~~-l-~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          577 GAHAMSSVNSVIWLNETT-I-VSAGQDSNIKFWNV  609 (611)
T ss_dssp             TSSTTSCEEEEEEEETTE-E-EEEETTSCEEEEEC
T ss_pred             ccCcccCeeEEEEcCCCE-E-EEecCCCCEEEEec
Confidence            689 78999999999999 8 99999999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-38  Score=311.60  Aligned_cols=280  Identities=13%  Similarity=0.210  Sum_probs=234.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.+|  .+++|+|+|++|++|+.||+|+|||+.++..+..+..|...+....|+++                        
T Consensus        13 ~~~V--~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------   66 (304)
T 2ynn_A           13 SDRV--KGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR------------------------   66 (304)
T ss_dssp             CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG------------------------
T ss_pred             CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC------------------------
Confidence            4678  55599999999999999999999999999999888877666655555544                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         +++|++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++++|++|+.|++|++||++++ .....+.+|...
T Consensus        67 ---~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~  142 (304)
T 2ynn_A           67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (304)
T ss_dssp             ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC
T ss_pred             ---CCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc
Confidence               788999999999999999999988666 689999999999999999999999999999999887 455678899999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |.+++|+| ++.+|++|+  +.|++||++++.....+. +|...+..+.|+|  ++++|++++ .|++|++||+++++  
T Consensus       143 v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~--  219 (304)
T 2ynn_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS--  219 (304)
T ss_dssp             EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE--
T ss_pred             EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc--
Confidence            99999999 678999988  999999999887666554 5668899999986  778999988 79999999999875  


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                         ++..+..+...+..+.|+     |++.+|++++.||+|++||..+++.++                           
T Consensus       220 ---~~~~~~~h~~~v~~~~~~-----p~~~~l~s~s~Dg~i~iWd~~~~~~~~---------------------------  264 (304)
T 2ynn_A          220 ---CVATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEK---------------------------  264 (304)
T ss_dssp             ---EEEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCCEEE---------------------------
T ss_pred             ---cceeeCCCCCCEEEEEEC-----CCCCEEEEEcCCCeEEEEECCCCceee---------------------------
Confidence               445666677777888888     999999999999999999987765432                           


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc--eeeccccceecccceeee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV--LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~~s~s~d~~~~~w~~~  380 (579)
                                                  ++..|...+.+++|+|+|.  ++ ++|+.| .+.+|+++
T Consensus       265 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~-asg~~~-g~~~~~~~  301 (304)
T 2ynn_A          265 ----------------------------TLNVGLERSWCIATHPTGRKNYI-ASGFDN-GFTVLSLG  301 (304)
T ss_dssp             ----------------------------EECCSSSSEEEEEECTTCGGGCE-EEEETT-EEEEEECC
T ss_pred             ----------------------------eccCCCccEEEEEECCCCCceEE-EEecCC-ceEEEEec
Confidence                                        2234556788999888875  45 777644 45667663

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=317.88  Aligned_cols=290  Identities=11%  Similarity=0.081  Sum_probs=224.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  -+++|+|||++|++++ |+++++||..    +..+.............   ........+.+++|.+        
T Consensus        31 ~~v--~~~~fs~dG~~l~~~s-d~~~r~Wd~~----~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~--------   92 (344)
T 4gqb_B           31 RQL--EAARYRSDGALLLGAS-SLSGRCWAGS----LWLFKDPCAAPNEGFCS---AGVQTEAGVADLTWVG--------   92 (344)
T ss_dssp             SEE--EEEEECTTSCEEEEEE-CCSSSCCCEE----EEEESSGGGTTCGGGCS---EEEEESSCEEEEEEET--------
T ss_pred             CCE--EEEEECCCCCEEEEEe-CCceEEeece----eeeeccccccCCcceee---eeeccCCCEEEEEEeC--------
Confidence            446  4559999999999888 7889999732    22222111110000000   0011123577888876        


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                        ...+++|+.||.|++||+.+++....   ...+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+.++.+|..
T Consensus        93 --d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 --ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             --TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             --CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence              34689999999999999998875322   2358999999999999999999999999999999999999999999999


Q ss_pred             CeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCC-CEEEEEecCCCeEEEEEcCCCcc
Q 008058          161 GISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNG-KYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .|++++|+|++. ++++++  +.|++||+++++....+.  .|...+.+++|+|++ +++++++ .|++|++||+++++.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSC  249 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--C
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcE
Confidence            999999999885 677776  899999999999888774  456679999999954 5677776 799999999998764


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      .     ..+..+...+.++.|+     |++ ++|++|+.||+|+|||..+++.+                          
T Consensus       250 ~-----~~~~~h~~~v~~v~fs-----p~g~~~lasgs~D~~i~vwd~~~~~~~--------------------------  293 (344)
T 4gqb_B          250 V-----LSSAVHSQCVTGLVFS-----PHSVPFLASLSEDCSLAVLDSSLSELF--------------------------  293 (344)
T ss_dssp             C-----EEEECCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTCCEEE--------------------------
T ss_pred             E-----EEEcCCCCCEEEEEEc-----cCCCeEEEEEeCCCeEEEEECCCCcEE--------------------------
Confidence            3     5566677778888898     887 57999999999999997654321                          


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                    .+.+|...|.+++|+|+|..+.+|+|.|+++++|++.
T Consensus       294 ------------------------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          294 ------------------------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             ------------------------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             ------------------------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence                                          2337888999999999998653899999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=6e-38  Score=308.90  Aligned_cols=287  Identities=15%  Similarity=0.143  Sum_probs=236.0

Q ss_pred             CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCC-----CeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++++|  .+++|+|++ ++|++|+.|++|++|++.+     +..+..+++|...+..+.|+++                 
T Consensus        16 H~~~V--~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-----------------   76 (319)
T 3frx_A           16 HNGWV--TSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-----------------   76 (319)
T ss_dssp             CSSCE--EEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             ccceE--EEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-----------------
Confidence            46788  556999965 8999999999999999863     3456677777766665555555                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                                +.++++|+.|+.|++||+.+++.+..+ .+|...|.+++|+|++.+|++|+.|++|++||++ ++.+..+
T Consensus        77 ----------g~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~  144 (319)
T 3frx_A           77 ----------GAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL  144 (319)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred             ----------CCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence                      889999999999999999999988666 6899999999999999999999999999999985 6678888


Q ss_pred             ecCCCCeeEEEEccC------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          156 RASTKGISCMAVSSD------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .+|...|.+++|+|.      +..+++++  +.|++||+++++....+.+|...|.+++|+|++++|++++ .|+.|++|
T Consensus       145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~-~dg~i~iw  223 (319)
T 3frx_A          145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG-KDGEIMLW  223 (319)
T ss_dssp             CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCEEEEE
T ss_pred             eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Confidence            999999999999985      44788887  8999999999999999999999999999999999999998 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccc
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      |+.+++.     +..+.++. .+..+.|+     |++.++++++.+ .+++|+++....+....+.             .
T Consensus       224 d~~~~~~-----~~~~~~~~-~v~~~~~s-----p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~-------------~  278 (319)
T 3frx_A          224 NLAAKKA-----MYTLSAQD-EVFSLAFS-----PNRYWLAAATAT-GIKVFSLDPQYLVDDLRPE-------------F  278 (319)
T ss_dssp             ETTTTEE-----EEEEECCS-CEEEEEEC-----SSSSEEEEEETT-EEEEEEETTEEEEEEECCC-------------C
T ss_pred             ECCCCcE-----EEEecCCC-cEEEEEEc-----CCCCEEEEEcCC-CcEEEEeCcCeeeeccCcc-------------c
Confidence            9998763     34444443 46677887     999999888754 5999998766544322110             0


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .            +                      ....|...+.+++|+|||++| ++|+.|+++++|++.
T Consensus       279 ~------------~----------------------~~~~~~~~v~~~~~spdg~~l-~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          279 A------------G----------------------YSKAAEPHAVSLAWSADGQTL-FAGYTDNVIRVWQVM  316 (319)
T ss_dssp             T------------T----------------------CCGGGCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             c------------c----------------------cccCcCcceeEEEECCCCCEE-EEeecCceEEEEEEe
Confidence            0            0                      011355578999999999999 999999999999984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=314.17  Aligned_cols=294  Identities=14%  Similarity=0.170  Sum_probs=229.5

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEE--e-ccccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTE--F-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +|  .+++|+|+|++||+|+.|++|+|||+.++.....  + .+|...                  +.+++|.|.     
T Consensus        18 ~v--~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~------------------v~~~~~sp~-----   72 (345)
T 3fm0_A           18 RC--WFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT------------------VRKVAWSPC-----   72 (345)
T ss_dssp             CE--EEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSC------------------EEEEEECTT-----
T ss_pred             cE--EEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCc------------------EEEEEECCC-----
Confidence            67  5669999999999999999999999988764322  1 334443                  445555543     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeEeec
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGKFRA  157 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~  157 (579)
                          +.+|++|+.|+.|++||..++.. ....+.+|...|.+++|+|++++|++|+.|++|++||+.++.   .+..+.+
T Consensus        73 ----g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           73 ----GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             ----SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             ----CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence                78999999999999999987753 223347899999999999999999999999999999998763   4567888


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      |...|.+++|+|++++|++++  +.|++||.++++  +..++.+|...|.+++|+|++++|++++ .|++|++|+.....
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~  227 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPG  227 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTT
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCC
Confidence            999999999999999999998  899999998875  4578899999999999999999999998 79999999974332


Q ss_pred             cc----------cceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058          234 KQ----------SASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       234 ~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      ..          ...++..+. .+...+..+.|+     |++..|++++.|+.|++|+..........            
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~l~s~~~d~~i~vw~~~~~~~~~~~------------  290 (345)
T 3fm0_A          228 NEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-----QLTGALATACGDDAIRVFQEDPNSDPQQP------------  290 (345)
T ss_dssp             CTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC-----TTTCCEEEEETTSCEEEEEECTTSCTTSC------------
T ss_pred             CCccceeeccCCccceeEEecCCCCCcEEEEEEe-----cCCCEEEEEeCCCeEEEEEeCCCCCccee------------
Confidence            11          011222332 245566777887     89999999999999999997644211000            


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                         .      .               ..          ......+|...|.+++|+|++. +| +|+|.|+++++|++.
T Consensus       291 ---~------~---------------~~----------~~~~~~~h~~~V~~v~~~p~~~~~l-aS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          291 ---T------F---------------SL----------TAHLHQAHSQDVNCVAWNPKEPGLL-ASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             ---C------E---------------EE----------EEEETTSSSSCEEEEEECSSSTTEE-EEEETTSCEEEEEEC
T ss_pred             ---e------E---------------EE----------EeeecccccCcEeEeEEeCCCceEE-EEcCCCCcEEEEEec
Confidence               0      0               00          0001237888999999999985 77 999999999999984

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.3e-38  Score=307.00  Aligned_cols=281  Identities=21%  Similarity=0.301  Sum_probs=236.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|++|+..+++....+..|...+..+.|+++                       
T Consensus        22 h~~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   76 (312)
T 4ery_A           22 HTKAV--SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----------------------   76 (312)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             cCCcE--EEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-----------------------
Confidence            35678  55599999999999999999999999999998888776665554444444                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++|+.||.|++||+.+++.+..+ .+|...|.++.|+|++++|++++.|+.|++||+++++.+..+..|..+
T Consensus        77 ----~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  151 (312)
T 4ery_A           77 ----SNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP  151 (312)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence                788999999999999999999988666 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      |.+++|+|+++++++++  |.|++||+++++.+..+. .+..++..++|+|+++++++++ .|+.|++||+++++..   
T Consensus       152 v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---  227 (312)
T 4ery_A          152 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDYSKGKCL---  227 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-TTTEEEEEETTTTEEE---
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-CCCeEEEEECCCCcEE---
Confidence            99999999999999998  899999999998887764 5667899999999999999988 7999999999987633   


Q ss_pred             eEEeeecCc---eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          239 CVLAMEHPA---VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       239 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                        ..+..+.   ..+......     +++.+|++|+.||.|++||+.+++.+.                           
T Consensus       228 --~~~~~~~~~~~~~~~~~~~-----~~~~~l~sg~~dg~i~vwd~~~~~~~~---------------------------  273 (312)
T 4ery_A          228 --KTYTGHKNEKYCIFANFSV-----TGGKWIVSGSEDNLVYIWNLQTKEIVQ---------------------------  273 (312)
T ss_dssp             --EEECSSCCSSSCCCEEEEC-----SSSCEEEECCTTSCEEEEETTTCCEEE---------------------------
T ss_pred             --EEEEecCCceEEEEEEEEe-----CCCcEEEEECCCCEEEEEECCCchhhh---------------------------
Confidence              2332221   122223333     678999999999999999987654321                           


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc--ceecccceee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS--LLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s--~d~~~~~w~~  379 (579)
                                                  .+.+|...|.+++|+|++.++ ++++  .|+++++|+.
T Consensus       274 ----------------------------~~~~h~~~v~~~~~~p~~~~l-~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          274 ----------------------------KLQGHTDVVISTACHPTENII-ASAALENDKTIKLWKS  310 (312)
T ss_dssp             ----------------------------EECCCSSCEEEEEECSSSSEE-EEEECTTTCCEEEEEC
T ss_pred             ----------------------------hhhccCCcEEEEeecCcCCce-EEEEccCCccEEEecC
Confidence                                        344788899999999999999 8775  6999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.1e-39  Score=325.41  Aligned_cols=289  Identities=16%  Similarity=0.232  Sum_probs=241.0

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|+|++|++|+.||+|+|||..+++....++.|...+..+.|+++                       
T Consensus        65 H~~~V--~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  119 (380)
T 3iz6_a           65 HSGKV--YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-----------------------  119 (380)
T ss_dssp             CSSCE--EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-----------------------
T ss_pred             cccEE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-----------------------
Confidence            35778  56699999999999999999999999999999999888877777777666                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe------EEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeE
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                          +.++++|+.|+.|++||+.+..      .......+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..
T Consensus       120 ----g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~  195 (380)
T 3iz6_a          120 ----GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI  195 (380)
T ss_dssp             ----SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE
T ss_pred             ----CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE
Confidence                8899999999999999997532      1223457899999999999974 5699999999999999999998887


Q ss_pred             e-----ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          155 F-----RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       155 ~-----~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      +     .+|...|.+++|+| +++++++|+  +.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++ .|++|+
T Consensus       196 ~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s-~D~~i~  274 (380)
T 3iz6_a          196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGS-DDGTCR  274 (380)
T ss_dssp             ECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEEC-SSSCEE
T ss_pred             eecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEc-CCCeEE
Confidence            7     57888999999987 889999998  999999998 4577889999999999999999999999988 799999


Q ss_pred             EEEcCCCccccceeEEeee-----cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeec
Q 008058          226 LWRTDGVKKQSASCVLAME-----HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (579)
                      +||+++++..   ..+...     .....+..++|+     |+|.+|++|+.||.|++||..+++.+.....        
T Consensus       275 lwd~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------  338 (380)
T 3iz6_a          275 LFDMRTGHQL---QVYNREPDRNDNELPIVTSVAFS-----ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--------  338 (380)
T ss_dssp             EEETTTTEEE---EEECCCCSSSCCSSCSCSEEEEC-----SSSSEEEEECTTSCEEEEETTTCCEEEEECC--------
T ss_pred             EEECCCCcEE---EEecccccccccccCceEEEEEC-----CCCCEEEEEECCCCEEEEECCCCceEEEEec--------
Confidence            9999987643   111111     112236678887     9999999999999999999876654321100        


Q ss_pred             ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                                 ...+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus       339 -------------------------------------------~~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          339 -------------------------------------------LQNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -------------------------------------------SCSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEECC
T ss_pred             -------------------------------------------ccCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEecC
Confidence                                                       012688899999999999999 999999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.6e-38  Score=334.84  Aligned_cols=314  Identities=20%  Similarity=0.262  Sum_probs=264.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++++.|+.|++||. +++....+.+|...+..+.|+++                        
T Consensus       262 ~~~v--~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~------------------------  314 (577)
T 2ymu_A          262 SSSV--NGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------  314 (577)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC------------------------
Confidence            4567  45599999999999999999999996 57777778777766665555555                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++++.||.|++||....... .+ .+|...|.+++|+|+|+++++++.||.|++||. +++.+..+.+|...|
T Consensus       315 ---~~~l~t~~~d~~i~~w~~~~~~~~-~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v  388 (577)
T 2ymu_A          315 ---GQTIASASDDKTVKLWNRNGQHLQ-TL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  388 (577)
T ss_dssp             ---SSEEEEEETTSCEEEEETTSCEEE-EE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCE
T ss_pred             ---CCEEEEEeCCCeEEEEeCCCCeeE-EE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCe
Confidence               788999999999999998766543 33 579999999999999999999999999999995 688889999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|+|++|++++  +.|++||. +++.+..+.+|...|++++|+|++++|++++ .|+.|++||....      ..
T Consensus       389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-~d~~v~~w~~~~~------~~  460 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQ------LL  460 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSC------EE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc-CCCEEEEEECCCC------EE
Confidence            9999999999999987  89999995 6778889999999999999999999999988 7999999997542      23


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ..+..+...+..++|+     |++++|++++.|+.|++||. +++.++....+...+.+.. |+|+++    .+++++.|
T Consensus       461 ~~~~~~~~~v~~~~~s-----pd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~-~s~dg~----~l~s~~~d  529 (577)
T 2ymu_A          461 QTLTGHSSSVRGVAFS-----PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD  529 (577)
T ss_dssp             EEEECCSSCEEEEEEC-----TTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSS----CEEEEETT
T ss_pred             EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE-EcCCCC----EEEEEECc
Confidence            4455566677888888     99999999999999999995 5666665554443343333 688887    89999998


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                      +.+++|+         ........+.+|...|.+++|+|||++| +|+|.|+++++|+
T Consensus       530 g~v~lwd---------~~~~~~~~~~~h~~~v~~~~fs~dg~~l-~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          530 KTVKLWN---------RNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASSDKTVKLWN  577 (577)
T ss_dssp             SEEEEEC---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             CEEEEEe---------CCCCEEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCCEEEEeC
Confidence            8777654         1245677889999999999999999999 9999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-37  Score=315.19  Aligned_cols=302  Identities=16%  Similarity=0.226  Sum_probs=235.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|||||++||+|+ +++++||++.+++.+..+..+.....................+.+++|.+.      
T Consensus        64 ~~~V--~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d------  134 (393)
T 1erj_A           64 TSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD------  134 (393)
T ss_dssp             SSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT------
T ss_pred             CCEE--EEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC------
Confidence            4678  5669999999999987 789999999999998887655422110000000000011224677888764      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||+++++....+. +...+
T Consensus       135 ---g~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v  209 (393)
T 1erj_A          135 ---GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV  209 (393)
T ss_dssp             ---SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred             ---CCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence               788999999999999999999887665 6899999999999999999999999999999999999888776 55689


Q ss_pred             eEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          163 SCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       163 ~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .+++|+| +++++++|+  +.|++||+++++.+..+       .+|...|.+++|+|++++|++++ .|+.|++||++..
T Consensus       210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~  288 (393)
T 1erj_A          210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA  288 (393)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCC
Confidence            9999999 899999998  89999999999887776       57999999999999999999988 7999999999865


Q ss_pred             ccc-------cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          233 KKQ-------SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       233 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ...       ...+...+..+...+..+.++     |++.+|++|+.||.|++||..+++.+.                 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~sgs~D~~v~iwd~~~~~~~~-----------------  346 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLL-----------------  346 (393)
T ss_dssp             ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEE-----------------
T ss_pred             CCcccccCCCCCcceEEEecccCcEEEEEEC-----CCCCEEEEEeCCCeEEEEECCCCeEEE-----------------
Confidence            321       112334445555667777887     899999999999999999987654321                 


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC------Ccceeeccccceecccceee
Q 008058          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ------DGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~------dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                            .+.+|...|.+++|++      ++.++ +|||.|+++++|++
T Consensus       347 --------------------------------------~l~~h~~~v~~v~~~~~~~~~p~~~~l-~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          347 --------------------------------------MLQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY  387 (393)
T ss_dssp             --------------------------------------EEECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred             --------------------------------------EECCCCCCEEEEEecCCcCcCCCCCEE-EEECCCCcEEECcc
Confidence                                                  3346777888888775      78899 99999999999998


Q ss_pred             e
Q 008058          380 Q  380 (579)
Q Consensus       380 ~  380 (579)
                      .
T Consensus       388 ~  388 (393)
T 1erj_A          388 K  388 (393)
T ss_dssp             E
T ss_pred             c
Confidence            5

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-38  Score=319.18  Aligned_cols=285  Identities=12%  Similarity=0.102  Sum_probs=219.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeC------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPALDYFAICSG------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++..|  -+++|||||++||+|+.      |++|++|+..++.....+...             ..+| ...+++++|.+
T Consensus        41 H~~~V--~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-------------~~~~-~~~V~~~~~s~  104 (357)
T 4g56_B           41 MEVQI--GAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-------------GVQT-EAGVTDVAWVS  104 (357)
T ss_dssp             CCSEE--EEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-------------EEEC-SSCEEEEEEET
T ss_pred             ccCCE--EEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-------------cCCC-CCCEEEEEEcC
Confidence            35668  45599999999999997      677888887766543221100             0112 23467788876


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEE---ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWR---LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  152 (579)
                      .          ..+++++.+|.|++||+.+++....   ...+|...|++++|+|+|++|++|+.|++|++||+.+++.+
T Consensus       105 d----------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B          105 E----------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             T----------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             C----------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            3          3467889999999999998875421   22479999999999999999999999999999999999999


Q ss_pred             eEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCC-CEEEEEecCCCeEEE
Q 008058          153 GKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNG-KYVLSSAVGERYIAL  226 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~l~s~s~~d~~i~v  226 (579)
                      ..+.+|...|++++|+|++. ++++++  |.|++||+++++.+..+  ..|...+.+++|+|++ .+|++++ .|+.|++
T Consensus       175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~  253 (357)
T 4g56_B          175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSL  253 (357)
T ss_dssp             EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEE
T ss_pred             EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeE
Confidence            99999999999999999875 666666  89999999998876654  4567889999999985 4666666 7999999


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ||+++++..     ..+..+...+.+++|+     |++ ++|++++.||+|+|||+++++.+.                 
T Consensus       254 wd~~~~~~~-----~~~~~~~~~v~~l~~s-----p~~~~~lasgs~D~~i~iwd~~~~~~~~-----------------  306 (357)
T 4g56_B          254 VNIKNPDSA-----QTSAVHSQNITGLAYS-----YHSSPFLASISEDCTVAVLDADFSEVFR-----------------  306 (357)
T ss_dssp             EESSCGGGC-----EEECCCSSCEEEEEEC-----SSSSCCEEEEETTSCEEEECTTSCEEEE-----------------
T ss_pred             EECCCCcEe-----EEEeccceeEEEEEEc-----CCCCCEEEEEeCCCEEEEEECCCCcEeE-----------------
Confidence            999987643     4555666677888887     776 679999999999999987654321                 


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC-Ccceeeccccceecccceeee
Q 008058          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ-DGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                             ..+|...|.+++|+| |+.+| +|+|.|+++++|++.
T Consensus       307 ---------------------------------------~~~H~~~V~~vafsP~d~~~l-~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          307 ---------------------------------------DLSHRDFVTGVAWSPLDHSKF-TTVGWDHKVLHHHLP  342 (357)
T ss_dssp             ---------------------------------------ECCCSSCEEEEEECSSSTTEE-EEEETTSCEEEEECC
T ss_pred             ---------------------------------------ECCCCCCEEEEEEeCCCCCEE-EEEcCCCeEEEEECC
Confidence                                                   125788999999998 89999 999999999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.8e-36  Score=300.25  Aligned_cols=292  Identities=14%  Similarity=0.128  Sum_probs=225.8

Q ss_pred             CCCcccceEEEE-----cc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccccccccccccccccccccccCcc
Q 008058            2 GSSNIRDILTSF-----SP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDY   68 (579)
Q Consensus         2 ~~~~V~~~~~~f-----s~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (579)
                      ++.+|  .+++|     ++ |+++|++|+.|++|+|||+.++       .....+.+|...+..+.|+++          
T Consensus        20 H~~~V--~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~----------   87 (343)
T 2xzm_R           20 HSDWV--TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE----------   87 (343)
T ss_dssp             CSSCE--EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS----------
T ss_pred             chhhh--hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC----------
Confidence            45678  45588     76 9999999999999999998753       345566666555554444443          


Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~  148 (579)
                                       +.++++|+.|+.|++||+.+++.+..+ .+|...|++++|+|++++|++++.|++|++||+. 
T Consensus        88 -----------------~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-  148 (343)
T 2xzm_R           88 -----------------NCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-  148 (343)
T ss_dssp             -----------------TTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-
T ss_pred             -----------------CCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-
Confidence                             788999999999999999999988666 5799999999999999999999999999999997 


Q ss_pred             CceeeEee---cCCCCeeEEEEccCC----------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCE
Q 008058          149 GSLLGKFR---ASTKGISCMAVSSDG----------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       149 ~~~~~~~~---~~~~~v~~l~~~p~g----------~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      +.......   .|...|.+++|+|++          .++++++  |.|++|| ...+....+.+|...|.+++|+|+|++
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence            33333333   678899999999987          6888887  9999999 456777889999999999999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                      |++++ .|+.|++||+......    ...+.+. ..+..+.|+     |++.++++ +.|+.|++||+.+++.....   
T Consensus       228 l~sgs-~dg~v~iwd~~~~~~~----~~~~~~~-~~v~~v~~s-----p~~~~la~-~~d~~v~iw~~~~~~~~~~~---  292 (343)
T 2xzm_R          228 IATGG-KDKKLLIWDILNLTYP----QREFDAG-STINQIAFN-----PKLQWVAV-GTDQGVKIFNLMTQSKAPVC---  292 (343)
T ss_dssp             EEEEE-TTCEEEEEESSCCSSC----SEEEECS-SCEEEEEEC-----SSSCEEEE-EESSCEEEEESSSCCSCSEE---
T ss_pred             EEEEc-CCCeEEEEECCCCccc----ceeecCC-CcEEEEEEC-----CCCCEEEE-ECCCCEEEEEeCCCCCCceE---
Confidence            99998 7999999999544322    1222222 346778887     89887764 56888999998876543200   


Q ss_pred             eEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceec
Q 008058          294 KILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKS  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~  373 (579)
                        ..      ...      .+..                         .+...+|...+.+++|+|||.+| ++|+.|++
T Consensus       293 --~~------~~~------~~~~-------------------------~~~~~~~~~~v~~~~~sp~g~~l-~sg~~Dg~  332 (343)
T 2xzm_R          293 --TI------EAE------PITK-------------------------AEGQKGKNPQCTSLAWNALGKKL-FAGFTDGV  332 (343)
T ss_dssp             --EC------CCC------SGGG-------------------------BTTBCCSCCCEEEEEECSSSCCE-EEEETTSE
T ss_pred             --Ee------ecC------cchh-------------------------hhhhcCCCCceEEEEECCCCCeE-EEecCCce
Confidence              00      000      0000                         00123677789999999999999 99999999


Q ss_pred             ccceeee
Q 008058          374 KRGRYVQ  380 (579)
Q Consensus       374 ~~~w~~~  380 (579)
                      +++|++.
T Consensus       333 v~~w~~~  339 (343)
T 2xzm_R          333 IRTFSFE  339 (343)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=315.37  Aligned_cols=339  Identities=15%  Similarity=0.235  Sum_probs=257.5

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEEC----CCCe------EEEEeccccccccccccccccccccccCccceE
Q 008058            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDT----LKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|  .+++|+|+|+ +||+|+.||.|++|++    .+++      ....+........        ..++....++++
T Consensus        45 ~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~  114 (425)
T 1r5m_A           45 LDNI--VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA--------SSGKTTNQVTCL  114 (425)
T ss_dssp             CSCC--SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--------------CBCEEEE
T ss_pred             cCce--EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc--------cccCCCCceEEE
Confidence            3678  5569999999 9999999999999999    8887      3443332100000        001123467788


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 008058           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~  151 (579)
                      +|.+.         +.+|++|+.+|.|++|| .+++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       115 ~~s~~---------~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          115 AWSHD---------GNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             EECTT---------SSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             EEcCC---------CCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            88764         78899999999999999 566666555 57999999999999999999999999999999999999


Q ss_pred             eeEeecCCCC---------------eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058          152 LGKFRASTKG---------------ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       152 ~~~~~~~~~~---------------v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      +..+..+...               +.+++|+|++.+++.+. |.|++||+++++.+..+.+|...|.+++|+|++++|+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9988877766               99999999876444444 9999999999999999999999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      +++ .|+.|++||++.++..     ..+..+...+..+.|+     |++ ++++++.||.|++||+.+++.+........
T Consensus       264 ~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~~-----~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~  331 (425)
T 1r5m_A          264 SAS-DDGTLRIWHGGNGNSQ-----NCFYGHSQSIVSASWV-----GDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV  331 (425)
T ss_dssp             EEE-TTSCEEEECSSSBSCS-----EEECCCSSCEEEEEEE-----TTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred             EEc-CCCEEEEEECCCCccc-----eEecCCCccEEEEEEC-----CCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence            988 7999999999987643     3444455567778887     888 999999999999999999987766554333


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEE-----EeCC-------CCCceeEEEecCCC--CcEEEeecCCc
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV-----AYGL-------LLKPSFQKILVNSG--EDINLNCSQDG  361 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~g~-------~~~~~~~~~~~h~~--~v~~~~~s~dg  361 (579)
                      .+.+.. ++++++    .+++++.++.++.++..-..     ..+.       ........+.+|..  .|.+++|+|||
T Consensus       332 ~i~~~~-~s~~~~----~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  406 (425)
T 1r5m_A          332 PIFAGR-ISQDGQ----KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG  406 (425)
T ss_dssp             CEEEEE-ECTTSS----EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTS
T ss_pred             cEEEEE-EcCCCC----EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC
Confidence            333322 566766    88888888866665421000     0000       00125667888876  99999999999


Q ss_pred             ceeeccccceecccceeee
Q 008058          362 VLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       362 ~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+| ++++.|+.+++|++.
T Consensus       407 ~~l-~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          407 NKI-SVAYSLQEGSVVAIP  424 (425)
T ss_dssp             SEE-EEEESSSCCEEEECC
T ss_pred             ceE-EEEecCceEEEEeec
Confidence            999 999999999999973

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=299.78  Aligned_cols=287  Identities=14%  Similarity=0.137  Sum_probs=215.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cc-ccccccccccccccccccccCccceEEeeecc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEF-AD-IASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      +.++|  .+++|+|+  +||+|+.|++|++||+.++  .....+ .. |...                  +.+++|.|. 
T Consensus        13 h~~~v--~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~------------------v~~v~~sp~-   69 (330)
T 2hes_X           13 YKEKI--WSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA------------------IRSVAWRPH-   69 (330)
T ss_dssp             CSSCE--EEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC------------------EEEEEECTT-
T ss_pred             CCCce--eeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC------------------EEEEEECCC-
Confidence            45778  55699988  9999999999999999875  344444 22 4443                  445555443 


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccC-------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC--
Q 008058           78 RKKKRKLGSSLLVLGTGGGDVLALAVSA-------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT--  148 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~--  148 (579)
                              +.+|++|+.|+.|++||+..       .+.... +.+|...|++++|+|+|++|++|+.|++|++||+..  
T Consensus        70 --------~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~  140 (330)
T 2hes_X           70 --------TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG  140 (330)
T ss_dssp             --------SSEEEEEETTSCEEEEEC-------CCCEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC
T ss_pred             --------CCEEEEEeCCCcEEEEEcccCcCccccceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC
Confidence                    78899999999999999853       233433 468999999999999999999999999999999943  


Q ss_pred             --CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEecC--CCEEEEEecC
Q 008058          149 --GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG  220 (579)
Q Consensus       149 --~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~  220 (579)
                        .+++..+.+|...|.+++|+|++++|++++  +.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++ .
T Consensus       141 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~  219 (330)
T 2hes_X          141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-D  219 (330)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-T
T ss_pred             CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-C
Confidence              256778899999999999999999999998  89999999876  678889999999999999998  66888887 7


Q ss_pred             CCeEEEEEcCCCcccc---ceeEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEE
Q 008058          221 ERYIALWRTDGVKKQS---ASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKIL  296 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  296 (579)
                      |++|++||+..+....   ..+...+.. +...+..+.|+     +++ +|++++.||.|++||..+++..         
T Consensus       220 D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-----~~~-~l~s~~~dg~v~iw~~~~~~~~---------  284 (330)
T 2hes_X          220 DSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG-----FNG-LIASVGADGVLAVYEEVDGEWK---------  284 (330)
T ss_dssp             TSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC-----TTS-CEEEEETTSCEEEEEEETTEEE---------
T ss_pred             CCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc-----CCC-EEEEEeCCCEEEEEEcCCCceE---------
Confidence            9999999987643210   112233322 45567777886     554 7999999999999996533210         


Q ss_pred             eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC-CcEEEeecC--Ccceeeccccceec
Q 008058          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG-EDINLNCSQ--DGVLLPMSQSLLKS  373 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~-~v~~~~~s~--dg~~l~~s~s~d~~  373 (579)
                      ..                                           .....+|.. .|.+++|+|  ||.+| +|+|.|++
T Consensus       285 ~~-------------------------------------------~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg~  320 (330)
T 2hes_X          285 VF-------------------------------------------AKRALCHGVYEINVVKWLELNGKTIL-ATGGDDGI  320 (330)
T ss_dssp             EE-------------------------------------------EEESCTTTTSCEEEEEEC-----CCE-EEEETTSE
T ss_pred             EE-------------------------------------------eccccccccceEEEEEEecCCCceEE-EEecCCCc
Confidence            00                                           001125665 799999999  78999 99999999


Q ss_pred             ccceeee
Q 008058          374 KRGRYVQ  380 (579)
Q Consensus       374 ~~~w~~~  380 (579)
                      +++|++.
T Consensus       321 v~~W~~~  327 (330)
T 2hes_X          321 VNFWSLE  327 (330)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEec
Confidence            9999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-36  Score=321.53  Aligned_cols=316  Identities=21%  Similarity=0.249  Sum_probs=260.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++|++++.|+.|++||. +++.+..+.+|...+..+.|+++                        
T Consensus       221 ~~~v--~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d------------------------  273 (577)
T 2ymu_A          221 SSSV--RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPD------------------------  273 (577)
T ss_dssp             SSCE--EEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCC------------------------
Confidence            4667  45599999999999999999999996 57777788777766665555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++++.++.|++||.. ++....+ .+|...|++++|+|+++.+++++.|++|++||.. +..+..+.+|...+
T Consensus       274 ---~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v  347 (577)
T 2ymu_A          274 ---GQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV  347 (577)
T ss_dssp             ---SSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred             ---CCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence               7889999999999999965 4444444 6899999999999999999999999999999975 55677888899999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|+|+++++++  +.|++||. +++.+..+.+|...|.+++|+|++++|++++ .|+.|++||....      ..
T Consensus       348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~d~~v~~~~~~~~------~~  419 (577)
T 2ymu_A          348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKLWNRNGQ------LL  419 (577)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE-TTSEEEEECTTCC------EE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe-CCCEEEEEeCCCC------EE
Confidence            9999999999999988  89999995 6778889999999999999999999999988 7999999996432      23


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ..+..+...+..+.|+     |++++|++++.||.|++||.. ++.+....++...+.+.. |+|+++    .+++++.|
T Consensus       420 ~~~~~~~~~v~~~~~s-----~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~-~spd~~----~las~~~d  488 (577)
T 2ymu_A          420 QTLTGHSSSVWGVAFS-----PDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVA-FSPDGQ----TIASASDD  488 (577)
T ss_dssp             EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEE-ECTTSC----EEEEEETT
T ss_pred             EEecCCCCCeEEEEEC-----CCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEE-EcCCCC----EEEEEeCC
Confidence            4455566667778887     999999999999999999964 455544444333333333 678877    88999988


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +.++.++         ......+.+.+|...|.+++|+|||++| ++++.|+++++|+..
T Consensus       489 ~~i~iw~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          489 KTVKLWN---------RNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWNRN  538 (577)
T ss_dssp             SEEEEEE---------TTSCEEEEEECCSSCEEEEEECTTSSCE-EEEETTSEEEEECTT
T ss_pred             CEEEEEc---------CCCCEEEEEeCCCCCEEEEEEcCCCCEE-EEEECcCEEEEEeCC
Confidence            7666543         1245667888999999999999999999 999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8.5e-36  Score=293.57  Aligned_cols=239  Identities=21%  Similarity=0.316  Sum_probs=214.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|++.++++++.|++|++||+.+++++..+..+...+..+.|+++                        
T Consensus        80 ~~~v--~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spd------------------------  133 (321)
T 3ow8_A           80 QLGV--VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD------------------------  133 (321)
T ss_dssp             SSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCC------------------------
Confidence            4567  66699999999999999999999999999999888766655555555544                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.++++|+.+|.|++||+.+++....+ ..|...|.+++|+|+|++|++++.||.|++||+++++.+..+.+|..+|
T Consensus       134 ---g~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v  209 (321)
T 3ow8_A          134 ---SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI  209 (321)
T ss_dssp             ---SSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred             ---CCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence               888999999999999999999887666 4688899999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .+++|+|++++|++|+  +.|++||+++++.+.++.+|...|.+++|+|++++|++++ .|++|++||+.+++     ++
T Consensus       210 ~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~-----~~  283 (321)
T 3ow8_A          210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDKSVKVWDVGTRT-----CV  283 (321)
T ss_dssp             CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE-----EE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCE-----EE
Confidence            9999999999999998  8999999999999999999999999999999999999998 79999999998876     34


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ..+..+...+..+.|+     |++.+|++++.||+|++||..
T Consensus       284 ~~~~~h~~~v~~v~~s-----~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          284 HTFFDHQDQVWGVKYN-----GNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEEC-----TTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCcEEEEEEC-----CCCCEEEEEeCCCeEEEEeCC
Confidence            5555566677788887     999999999999999999963

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.9e-37  Score=312.29  Aligned_cols=321  Identities=13%  Similarity=0.130  Sum_probs=243.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++|+|+|++|++|+.||.|++||..+++....+..                 +   ...++.+.+.+        +.+|+
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------------~---~~~~~~~~~~~--------~~~l~  113 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-----------------A---DYTAVDTAKLQ--------MRRFI  113 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-----------------C---CEEEEEEECSS--------SCEEE
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-----------------C---CceEEEEEecC--------CCEEE
Confidence            49999999999999999999999987654322221                 1   22333333332        78899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      +|+.+|.|++||+.+++....+ .+|...|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus       114 ~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  192 (420)
T 3vl1_A          114 LGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR  192 (420)
T ss_dssp             EEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence            9999999999999998887544 689999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEE---------------------EecCCCEEEEEecCCCeE
Q 008058          171 GKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMT---------------------FSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~---------------------~~~~~~~l~s~s~~d~~i  224 (579)
                      +++|++++  |.|++||+++++.+..+..   |...|.++.                     |+|+++++++++ .|+.|
T Consensus       193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i  271 (420)
T 3vl1_A          193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVI  271 (420)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCE
T ss_pred             CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeE
Confidence            99999988  8999999999999988875   344455554                     568899999887 79999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCcee-ecccCC-ceEEeeecc
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEE-LRNTKA-TKILSSSED  301 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~~~~~~  301 (579)
                      ++||+++++..   . .....+...+.++.|+     |++. +|++++.||.|++||+.+++. +..... ....+.+. 
T Consensus       272 ~i~d~~~~~~~---~-~~~~~~~~~v~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-  341 (420)
T 3vl1_A          272 TVHNVFSKEQT---I-QLPSKFTCSCNSLTVD-----GNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-  341 (420)
T ss_dssp             EEEETTTCCEE---E-EECCTTSSCEEEEEEC-----SSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred             EEEECCCCcee---E-EcccccCCCceeEEEe-----CCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence            99999887633   1 1223345567778887     8888 999999999999999988753 332221 11111111 


Q ss_pred             cCcccccccchhhhhccccceecCCceEEEEEeCCCC-----CceeEEEecCCCCcEEEeecCCcc---eeeccccceec
Q 008058          302 VNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLL-----KPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKS  373 (579)
Q Consensus       302 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~  373 (579)
                       +.++++    .+++++.|+.++.|+..    .+...     ......+..|...+.+++|+|||.   .+ ++.+.++.
T Consensus       342 -~~~~~~----~l~s~~~d~~v~iw~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l-~a~g~~g~  411 (420)
T 3vl1_A          342 -YFAAGA----LFVSSGFDTSIKLDIIS----DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEV-LEVGKNNF  411 (420)
T ss_dssp             -EEETTE----EEEEETTTEEEEEEEEC----CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEE-EEEETTTE
T ss_pred             -EeCCCC----EEEEecCCccEEEEecc----CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceE-EEEcCCce
Confidence             133444    78888888766665421    11101     122334667888999999999999   56 44555889


Q ss_pred             ccceeeee
Q 008058          374 KRGRYVQN  381 (579)
Q Consensus       374 ~~~w~~~~  381 (579)
                      +.+|++.+
T Consensus       412 ~~~~~~~~  419 (420)
T 3vl1_A          412 CALYNLSN  419 (420)
T ss_dssp             EEEEESCC
T ss_pred             EEEEeccC
Confidence            99998853

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-35  Score=294.77  Aligned_cols=319  Identities=10%  Similarity=0.055  Sum_probs=247.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|||++++++..++.+.+|+............|...+.                  ++.|.+.      
T Consensus         9 ~~~v--~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~------   62 (337)
T 1gxr_A            9 SKPA--YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVC------------------AVTISNP------   62 (337)
T ss_dssp             EEEC--CEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCC------------------EEEECSS------
T ss_pred             CCce--eEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceE------------------EEEEecC------
Confidence            4577  5559999999999988877777776554444433334554444                  4555432      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR  156 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~  156 (579)
                         +.++++++ +|.|++||+.+++....+    ..+|...|.+++|+|+++++++++.||.|++||+.+++  ....+.
T Consensus        63 ---~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  138 (337)
T 1gxr_A           63 ---TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT  138 (337)
T ss_dssp             ---SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred             ---CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence               77888888 999999999876532221    12688999999999999999999999999999999887  566788


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .|...|.+++|+|+++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|++||+++++.
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~  217 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQ  217 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-cCCcEEEEECCCCce
Confidence            8999999999999999999987  8999999999999999999999999999999999999988 799999999998763


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      .     ....+.. .+..+.|+     |++.++++++.||.|++||+.+++.... ..+...+.... ++++++    .+
T Consensus       218 ~-----~~~~~~~-~v~~~~~s-----~~~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~----~l  280 (337)
T 1gxr_A          218 L-----QQHDFTS-QIFSLGYC-----PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLK-FAYCGK----WF  280 (337)
T ss_dssp             E-----EEEECSS-CEEEEEEC-----TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEEEEE-ECTTSS----EE
T ss_pred             E-----eeecCCC-ceEEEEEC-----CCCCEEEEEcCCCcEEEEECCCCCeEEE-cCCccceeEEE-ECCCCC----EE
Confidence            3     3334433 45667777     9999999999999999999998865432 22222222222 566666    78


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      ++++.++.++.++        ....... ....|...+.+++|+|||.++ ++++.|+.+++|++
T Consensus       281 ~~~~~dg~i~~~~--------~~~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          281 VSTGKDNLLNAWR--------TPYGASI-FQSKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEE--------TTTCCEE-EEEECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             EEecCCCcEEEEE--------CCCCeEE-EEecCCCcEEEEEECCCCCEE-EEecCCCeEEEEEE
Confidence            8888877655543        1111222 234588899999999999999 99999999999987

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-35  Score=301.85  Aligned_cols=239  Identities=18%  Similarity=0.251  Sum_probs=213.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++|+|+|++|++|+.||+|+|||+.+++++..+.+|...+..+.|+++                       
T Consensus       149 h~~~V--~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~-----------------------  203 (410)
T 1vyh_C          149 HTDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN-----------------------  203 (410)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS-----------------------
T ss_pred             cCCcE--EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCC-----------------------
Confidence            35678  55699999999999999999999999999999888877666555555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.++++|+.|+.|++||+.++.++..+ .+|...|.++.|+|++.+|++|+.|++|++||+.+++....+.+|...
T Consensus       204 ----~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~  278 (410)
T 1vyh_C          204 ----GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  278 (410)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence                788999999999999999999988666 689999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccC--------------------CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058          162 ISCMAVSSD--------------------GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~--------------------g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      |.+++|+|+                    |.++++|+  +.|++||+++++++.++.+|...|++++|+|++++|++++ 
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-
Confidence            999999996                    66899888  8999999999999999999999999999999999999998 


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      .|+.|++||+.+++..     ..+..+...+.++.|+     |++.+|++|+.||+|++|+.
T Consensus       358 ~D~~i~vwd~~~~~~~-----~~~~~h~~~v~~l~~~-----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          358 DDKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             TTTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC-
T ss_pred             CCCeEEEEECCCCceE-----EEEcCCCCcEEEEEEc-----CCCCEEEEEeCCCcEEEEeC
Confidence            7999999999877633     4555666678888888     99999999999999999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=289.34  Aligned_cols=294  Identities=14%  Similarity=0.137  Sum_probs=232.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.+++....+..|...+..+.|+++                       
T Consensus        31 h~~~v--~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------------------   85 (369)
T 3zwl_B           31 HERPL--TQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-----------------------   85 (369)
T ss_dssp             CSSCE--EEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-----------------------
T ss_pred             eeceE--EEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-----------------------
Confidence            45788  55699999999999999999999999999999988877665555555444                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc------
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS------  150 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~------  150 (579)
                          +.++++++.||.|++||+.+++.+..+.  |...|.+++|+|+++++++++.+     |.|++||+..+.      
T Consensus        86 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~  159 (369)
T 3zwl_B           86 ----TKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT  159 (369)
T ss_dssp             ----SSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence                7889999999999999999999887764  78899999999999999999999     999999987653      


Q ss_pred             -----eeeEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          151 -----LLGKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       151 -----~~~~~~~~~~--~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                           ....+..|..  .+.+++|+|+++++++++  |.|++||+++ ++.+..+..|...|.+++|+|++++|++++ .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  238 (369)
T 3zwl_B          160 KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS-R  238 (369)
T ss_dssp             EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec-C
Confidence                 3444555666  899999999999999987  8999999998 788999999999999999999999999988 7


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeec
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (579)
                      |+.|++||+++++..     ..+. ....+..+.|+     |++.++++++.++...+|........     ....    
T Consensus       239 d~~i~v~d~~~~~~~-----~~~~-~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~i~----  298 (369)
T 3zwl_B          239 DTNSFLVDVSTLQVL-----KKYE-TDCPLNTAVIT-----PLKEFIILGGGQEAKDVTTTSANEGK-----FEAR----  298 (369)
T ss_dssp             TSEEEEEETTTCCEE-----EEEE-CSSCEEEEEEC-----SSSSEEEEEECCC------------------CEEE----
T ss_pred             CceEEEEECCCCcee-----eeec-CCCCceeEEec-----CCCceEEEeecCCCceEEEEecCCCc-----ceeE----
Confidence            999999999987643     3343 34445667777     99999999999986555543221100     0000    


Q ss_pred             ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                      .+..........+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       299 --------------------------------~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          299 --------------------------------FYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY-ASGGEDGFIRLHHFE  345 (369)
T ss_dssp             --------------------------------EEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEEEC
T ss_pred             --------------------------------EEecCCCcchhheecccCcEEEEEECCCCCEE-EEEcCCCeEEEEECc
Confidence                                            00011122333566788899999999999999 999999999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=311.23  Aligned_cols=332  Identities=11%  Similarity=0.112  Sum_probs=249.9

Q ss_pred             cccceEEEEccCCC-EEEEE----------eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEe
Q 008058            5 NIRDILTSFSPALD-YFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus         5 ~V~~~~~~fs~dg~-~las~----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +|  .+++|+|+|+ +|++|          +.|+.|+|||+.++.....+.               ...| ...+.+++|
T Consensus        14 ~v--~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------~~~~-~~~v~~~~~   75 (416)
T 2pm9_A           14 RT--ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------SLQV-DSKFNDLDW   75 (416)
T ss_dssp             ES--CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------CCCC-SSCEEEEEE
T ss_pred             hc--ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------EEec-CCceEEEEE
Confidence            46  3459999997 99999          889999999998775221110               0011 335667777


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCC
Q 008058           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~  148 (579)
                      .+.         +.+|++|+.+|.|++||+.+    .+.+..+ .+|...|++++|+|+ +++|++++.||.|++||+.+
T Consensus        76 s~~---------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~  145 (416)
T 2pm9_A           76 SHN---------NKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK  145 (416)
T ss_dssp             CSS---------SSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTT
T ss_pred             CCC---------CCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCC
Confidence            654         77899999999999999988    3344444 689999999999998 89999999999999999998


Q ss_pred             Cc------eeeE---eecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------CCCEEEEEEecC
Q 008058          149 GS------LLGK---FRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------PGAVRFMTFSDN  210 (579)
Q Consensus       149 ~~------~~~~---~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~  210 (579)
                      ++      ....   +..|...|.+++|+|+ +.++++++  |.|++||+++++.+..+..|      ...|.+++|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  225 (416)
T 2pm9_A          146 CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK  225 (416)
T ss_dssp             TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred             CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence            76      3332   4678889999999999 78899988  89999999999999888876      789999999999


Q ss_pred             C-CEEEEEecCCC---eEEEEEcCCCccccceeEEeee-cCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCc
Q 008058          211 G-KYVLSSAVGER---YIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       211 ~-~~l~s~s~~d~---~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      + .++++++ .|+   .|++||++.+...    ...+. .+...+..+.|+     | ++.+|++++.||.|++||++++
T Consensus       226 ~~~~l~~~~-~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          226 NSTRVATAT-GSDNDPSILIWDLRNANTP----LQTLNQGHQKGILSLDWC-----HQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             CTTEEEEEE-CCSSSCCCCEEETTSTTSC----SBCCCSCCSSCEEEEEEC-----SSCSSCEEEEESSSEEEEECSSSC
T ss_pred             CCCEEEEEE-CCCCCceEEEEeCCCCCCC----cEEeecCccCceeEEEeC-----CCCCCeEEEEeCCCCEEEeeCCCC
Confidence            7 5777776 688   9999999986422    22343 445566777887     7 8999999999999999999999


Q ss_pred             eeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCC----------------------------
Q 008058          285 EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGL----------------------------  336 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~----------------------------  336 (579)
                      +.+.....+...+.+.. +++++..   .+++++.|+.++.++..-......                            
T Consensus       296 ~~~~~~~~~~~~v~~~~-~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (416)
T 2pm9_A          296 EQLSQFPARGNWCFKTK-FAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP  371 (416)
T ss_dssp             CEEEEEECSSSCCCCEE-ECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred             ccceeecCCCCceEEEE-ECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence            88776655443333333 5666621   888999988776654211000000                            


Q ss_pred             CCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          337 LLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       337 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      ....+ .....|...+..++|+|||++| ++++.|+++++|++.
T Consensus       372 ~~~~~-~~~~~~~~~~~~~~~s~dg~~l-a~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          372 SVFHL-QAPTWYGEPSPAAHWAFGGKLV-QITPDGKGVSITNPK  413 (416)
T ss_dssp             CSSCC-CCCSTTCCCSCCCEEETTTEEE-CBCTTSSCBCCBCCC
T ss_pred             ccccc-cCCccccCCccceEEeeCCeEE-EEeCCCCeEEEEEec
Confidence            00000 1112266778899999999999 999999999999984

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-34  Score=283.86  Aligned_cols=289  Identities=16%  Similarity=0.211  Sum_probs=230.8

Q ss_pred             CCCcccceEEEEccC-CCEEEEEeCCCcEEEEECCCCe-----EEEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLKGQ-----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++++|  .+++|+|+ +++||||+.||+|+|||+.+++     +...+++|...+..+.|+++                 
T Consensus        37 H~~~V--~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d-----------------   97 (340)
T 4aow_A           37 HNGWV--TQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-----------------   97 (340)
T ss_dssp             CSSCE--EEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT-----------------
T ss_pred             ccCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC-----------------
Confidence            46789  55599997 6899999999999999987643     45566666655555544444                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eE
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GK  154 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~  154 (579)
                                +.++++++.||.|++|+...+...... ..+...+..+.+++++++|++++.|+.+++||+...... ..
T Consensus        98 ----------g~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~  166 (340)
T 4aow_A           98 ----------GQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQ  166 (340)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEE
Confidence                      889999999999999999998877555 457788999999999999999999999999998765443 34


Q ss_pred             eecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          155 FRASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      ..+|...+.+++|++++  .++++++  +.|++||+++++.+..+.+|.++|++++|+|++++|++++ .|+.|++||++
T Consensus       167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~Dg~i~iwd~~  245 (340)
T 4aow_A          167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG-KDGQAMLWDLN  245 (340)
T ss_dssp             SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTCEEEEEETT
T ss_pred             eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe-CCCeEEEEEec
Confidence            56788899999999865  4566666  8999999999999999999999999999999999999998 79999999999


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      +.+..     ..+.++. .+..+.|+     |++. +++++.||.|++||++++..+...+....               
T Consensus       246 ~~~~~-----~~~~~~~-~v~~~~~~-----~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------  298 (340)
T 4aow_A          246 EGKHL-----YTLDGGD-IINALCFS-----PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------  298 (340)
T ss_dssp             TTEEE-----EEEECSS-CEEEEEEC-----SSSS-EEEEEETTEEEEEETTTTEEEEEECCC-----------------
T ss_pred             cCcee-----eeecCCc-eEEeeecC-----CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------
Confidence            87633     4444443 45677776     7665 55667899999999987766543321100               


Q ss_pred             chhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          311 TAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                     .....+|...|.+++|+|||++| +||+.|++|++|++.
T Consensus       299 -------------------------------~~~~~~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          299 -------------------------------STSSKAEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ------------------------------------CCCCCEEEEEECTTSSEE-EEEETTSCEEEEEEE
T ss_pred             -------------------------------eeeccCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEeCC
Confidence                                           00233688899999999999999 999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.1e-35  Score=317.24  Aligned_cols=299  Identities=18%  Similarity=0.197  Sum_probs=231.4

Q ss_pred             CCCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCC-----eEEEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKG-----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++.+|  .+++|+|++ ++|++|+.||+|+||++.++     .....+.+|...+.++.|+++                 
T Consensus       381 H~~~V--~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-----------------  441 (694)
T 3dm0_A          381 HTDMV--TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-----------------  441 (694)
T ss_dssp             CSSCE--EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-----------------
T ss_pred             CCcee--EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-----------------
Confidence            56788  555999875 79999999999999998753     445666666665555555544                 


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                                +.+|++|+.||.|++||+.++.....+ .+|...|.+++|+|++++|++|+.|++|++||..........
T Consensus       442 ----------g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          442 ----------GQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             ----------CCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence                      889999999999999999999988666 589999999999999999999999999999998654333222


Q ss_pred             ---ecCCCCeeEEEEccCC--CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          156 ---RASTKGISCMAVSSDG--KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       156 ---~~~~~~v~~l~~~p~g--~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                         .+|...|.+++|+|++  ..+++++  +.|++||+++++....+.+|.+.|++++|+|++++|++++ .|+.|++||
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~-~Dg~i~iwd  589 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG-KDGVVLLWD  589 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSBCEEEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Confidence               3577899999999987  5788887  8999999999999999999999999999999999999998 799999999


Q ss_pred             cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccc
Q 008058          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK  308 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (579)
                      +++++..     ..+.++ ..+..++|+     |++.++++++ ++.|++||+++++.+...........         .
T Consensus       590 ~~~~~~~-----~~~~~~-~~v~~~~~s-----p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~---------~  648 (694)
T 3dm0_A          590 LAEGKKL-----YSLEAN-SVIHALCFS-----PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEA---------E  648 (694)
T ss_dssp             TTTTEEE-----ECCBCS-SCEEEEEEC-----SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-------------
T ss_pred             CCCCceE-----EEecCC-CcEEEEEEc-----CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccc---------c
Confidence            9987633     344443 356778887     8888877665 56799999999887655432110000         0


Q ss_pred             ccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          309 SATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       309 ~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                             .....+                    ......+...+.+++|||||.+| +|||.|+++++|++.
T Consensus       649 -------~~~~~~--------------------~~~~~~~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          649 -------KADNSG--------------------PAATKRKVIYCTSLNWSADGSTL-FSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ---------------------------------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred             -------cccccc--------------------cccCCceeEEeeeEEEcCCCCEE-EEEcCCCeEEEEecc
Confidence                   000000                    00011233357899999999999 999999999999984

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-34  Score=283.20  Aligned_cols=230  Identities=14%  Similarity=0.075  Sum_probs=198.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +.++++|+.||.|++||+.++..+..+ ..|..+|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus        25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~  103 (304)
T 2ynn_A           25 EPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI  103 (304)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence            888999999999999999999988666 5799999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCC-eeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDH-KKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +|+|+++++++|+  ++|++||++++ .....+.+|...|.+++|+| ++.+|++++ .|++|++||++.....   ...
T Consensus       104 ~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~---~~~  179 (304)
T 2ynn_A          104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPN---FTL  179 (304)
T ss_dssp             EECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCS---EEE
T ss_pred             EEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcc---cee
Confidence            9999999999998  89999999887 55677899999999999999 578889887 7999999999876543   122


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      . .++...+..+.+.+.   +++.+|++++.||+|++||+++++.+.                                 
T Consensus       180 ~-~~~~~~v~~~~~~~~---~~~~~l~s~s~D~~i~iWd~~~~~~~~---------------------------------  222 (304)
T 2ynn_A          180 T-TGQERGVNYVDYYPL---PDKPYMITASDDLTIKIWDYQTKSCVA---------------------------------  222 (304)
T ss_dssp             E-CCCTTCEEEEEECCS---TTCCEEEEEETTSEEEEEETTTTEEEE---------------------------------
T ss_pred             c-cCCcCcEEEEEEEEc---CCCCEEEEEcCCCeEEEEeCCCCccce---------------------------------
Confidence            2 233344555666521   478899999999999999987654321                                 


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                            ++.+|...|..++|+|++.+| +|++.|+++++|++.
T Consensus       223 ----------------------~~~~h~~~v~~~~~~p~~~~l-~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          223 ----------------------TLEGHMSNVSFAVFHPTLPII-ISGSEDGTLKIWNSS  258 (304)
T ss_dssp             ----------------------EEECCSSCEEEEEECSSSSEE-EEEETTSCEEEEETT
T ss_pred             ----------------------eeCCCCCCEEEEEECCCCCEE-EEEcCCCeEEEEECC
Confidence                                  345788899999999999999 999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8e-35  Score=292.77  Aligned_cols=318  Identities=12%  Similarity=0.049  Sum_probs=237.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++|++|+.||.|++||..+++  ....+..|...+.                  ++.|.+.   
T Consensus         7 ~~~~i--~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~---   63 (372)
T 1k8k_C            7 LVEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT------------------GVDWAPD---   63 (372)
T ss_dssp             CSSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE------------------EEEEETT---
T ss_pred             cCCCe--EEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc------------------EEEEeCC---
Confidence            46789  555999999999999999999999999887  7777776655544                  4445442   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeE-
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGK-  154 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~-  154 (579)
                            +.++++++.||.|++||+.+++..... ..+|...|.+++|+|++++|++++.||.|++||+..+..   ... 
T Consensus        64 ------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~  137 (372)
T 1k8k_C           64 ------SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  137 (372)
T ss_dssp             ------TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             ------CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeee
Confidence                  788999999999999999998754333 357899999999999999999999999999999988763   233 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEEC------------------CCCeeeEEeecCCCCEEEEEEecCCCEE
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNC------------------SDHKKMQKFSGHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~------------------~~~~~~~~~~~h~~~v~~l~~~~~~~~l  214 (579)
                      ...|...|.+++|+|+++++++++  |.|++||+                  ..++.+..+.+|...|.+++|+|++++|
T Consensus       138 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  217 (372)
T 1k8k_C          138 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV  217 (372)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEE
T ss_pred             ecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEE
Confidence            356788999999999999999987  89999995                  4678888999999999999999999999


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC--ce--eeccc
Q 008058          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN--IE--ELRNT  290 (579)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~~~~~  290 (579)
                      ++++ .|+.|++||+++++.     +..+..+...+..+.|+     |++.+++++ .||.|++|++.+  ++  .+...
T Consensus       218 ~~~~-~d~~i~i~d~~~~~~-----~~~~~~~~~~v~~~~~~-----~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~  285 (372)
T 1k8k_C          218 AWVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL  285 (372)
T ss_dssp             EEEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred             EEEe-CCCEEEEEECCCCce-----eEEEccCCCCeEEEEEe-----cCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence            9988 799999999988763     34555666667788887     899988877 999999999987  53  22222


Q ss_pred             CCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE-ecCCCCcEEEeec-CCc---ceee
Q 008058          291 KATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI-LVNSGEDINLNCS-QDG---VLLP  365 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~h~~~v~~~~~s-~dg---~~l~  365 (579)
                      .........       ..... .+.. ..+     ..+...   +.. .+. ..+ .+|...|.+++|. ++|   .+| 
T Consensus       286 ~~~~~~~~~-------~~~~~-~~~~-~~~-----~~~~~~---~~~-~~~-~~~~~~h~~~v~~~~~~~~~g~~~~~l-  345 (372)
T 1k8k_C          286 DVPKQSSQR-------GLTAR-ERFQ-NLD-----KKASSE---GSA-AAG-AGLDSLHKNSVSQISVLSGGKAKCSQF-  345 (372)
T ss_dssp             CCC---------------CHH-HHHH-HCC-----CCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEE-
T ss_pred             Cccccchhh-------hcchh-hhhh-hcc-----cccccc---cCc-ccc-ccccccccCCcceeEEecCCCcceeeE-
Confidence            111100000       00000 0000 000     000000   000 000 112 3899999999855 777   899 


Q ss_pred             ccccceecccceeee
Q 008058          366 MSQSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~  380 (579)
                      +|++.|+++++|++.
T Consensus       346 ~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          346 CTTGMDGGMSIWDVR  360 (372)
T ss_dssp             EEEETTSEEEEEEHH
T ss_pred             EEecCCCceEEEEec
Confidence            999999999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=287.91  Aligned_cols=239  Identities=9%  Similarity=0.062  Sum_probs=193.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe----ccccccccccccccccccccccCccceEEeeecccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF----ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++|  .+++|+||+ +|++|+.||+|+|||+.+++....+    .+|...+.                  +++|.+.   
T Consensus        83 ~~v--~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~------------------~v~~spd---  138 (344)
T 4gqb_B           83 AGV--ADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS------------------TVSVLSS---  138 (344)
T ss_dssp             SCE--EEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE------------------EEEECTT---
T ss_pred             CCE--EEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE------------------EEEECCC---
Confidence            567  556999986 7889999999999999988754433    24444444                  4455442   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~--  156 (579)
                            +.+|++|+.||.|++||+.+++++..+ .+|.+.|++++|+|++. +|++++.|++|++||+++++....+.  
T Consensus       139 ------g~~l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          139 ------GTQAVSGSKDICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             ------SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             ------CCEEEEEeCCCeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence                  889999999999999999999998766 68999999999999885 68999999999999999999888764  


Q ss_pred             cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCC
Q 008058          157 ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       157 ~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .+...+.+++|+|+ ++++++|+  |.|++||+++++++.++.+|...|++++|+|++. +|++++ .|++|++||+.++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~~  290 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSLS  290 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTCC
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCCC
Confidence            34557999999995 56788876  8999999999999999999999999999999984 677777 7999999999887


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCce
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  285 (579)
                      +.      ..+..|...+..+.|+     |++. +|++++.||+|++|++++..
T Consensus       291 ~~------~~~~~H~~~V~~v~~s-----p~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          291 EL------FRSQAHRDFVRDATWS-----PLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EE------EEECCCSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECCC--
T ss_pred             cE------EEEcCCCCCEEEEEEe-----CCCCeEEEEEcCCCeEEEEECCCCC
Confidence            53      2344555667788887     8876 56789999999999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-34  Score=336.54  Aligned_cols=324  Identities=15%  Similarity=0.181  Sum_probs=262.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|||||+++|+|+.||+|+|||+.+++.+..+.+|...+..+.|+++                        
T Consensus       615 ~~~v--~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------  668 (1249)
T 3sfz_A          615 TDAV--YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------------------------  668 (1249)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT------------------------
T ss_pred             cccE--EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecC------------------------
Confidence            4677  56699999999999999999999999999999999888776666666655                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +.++++|+.||.|++||+.+++.+..+ .+|...|.+++|+|  ++.++++++.||.|++||+.+++.+..+.+|..
T Consensus       669 ---~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~  744 (1249)
T 3sfz_A          669 ---DSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN  744 (1249)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC
Confidence               889999999999999999999988776 57999999999999  556899999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------------------------------------------
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------------------------------------------  195 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-------------------------------------------  195 (579)
                      .|++++|+|+++++++++  |.|++||+++++....+                                           
T Consensus       745 ~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          745 SVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             CEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             CEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            999999999999999998  89999999876544332                                           


Q ss_pred             ------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC
Q 008058          196 ------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA  263 (579)
Q Consensus       196 ------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                                  .+|...|.+++|+|+++++++++ .|+.|++|++.++..     ...+..+...+..+.|+     |+
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~v~~s-----pd  893 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL-SQYCVELWNIDSRLK-----VADCRGHLSWVHGVMFS-----PD  893 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC-SSSCEEEEETTTTEE-----EEEECCCSSCEEEEEEC-----TT
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCce-----eeecCCCccceEEEEEC-----CC
Confidence                        16788899999999999999987 699999999988753     34556667778888888     99


Q ss_pred             CcEEEEEEcCCeEEEEECCCceeecccCCc-------------------------------e------EEeeecccCccc
Q 008058          264 GLYVLAISETGVCYIWYGQNIEELRNTKAT-------------------------------K------ILSSSEDVNSKS  306 (579)
Q Consensus       264 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------~------~~~~~~~~~~~~  306 (579)
                      |.+|++++.||.|++|++.+..........                               .      ..+.+ ..++++
T Consensus       894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~sp~  972 (1249)
T 3sfz_A          894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC-CCLSPH  972 (1249)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE-EEECTT
T ss_pred             CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE-EEEcCC
Confidence            999999999999999997643211100000                               0      00011 114555


Q ss_pred             ccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          307 QKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       307 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      ++    .+++|+.+|.++.++        .........+.+|...|.+++|+|||+++ ++++.|+++++|++.+
T Consensus       973 g~----~l~~g~~~g~i~i~d--------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          973 LE----YVAFGDEDGAIKIIE--------LPNNRVFSSGVGHKKAVRHIQFTADGKTL-ISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp             SS----EEEEEETTSCCEEEE--------TTTTSCEEECCCCSSCCCCEEECSSSSCE-EEECSSSBEEEEETTT
T ss_pred             CC----EEEEEcCCCCEEEEE--------cCCCceeeecccCCCceEEEEECCCCCEE-EEEcCCCEEEEEECCC
Confidence            55    677777766554432        22345566777899999999999999999 9999999999999853

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-34  Score=290.88  Aligned_cols=282  Identities=10%  Similarity=0.052  Sum_probs=214.0

Q ss_pred             CcccceEEEEccCCCEEEEEeCCC-------cEEEEECCCCeE--------EE--EeccccccccccccccccccccccC
Q 008058            4 SNIRDILTSFSPALDYFAICSGDA-------RIKIWDTLKGQV--------QT--EFADIASTETTSLYGNRLEREHLSV   66 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg-------~i~vwd~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~   66 (579)
                      -||  .+++|+|||++|++|+.|.       .|++|++..+..        ..  .+..+..                  
T Consensus        15 ~PV--~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~------------------   74 (365)
T 4h5i_A           15 YPA--YGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDD------------------   74 (365)
T ss_dssp             SCE--EEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSC------------------
T ss_pred             CCE--EEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCC------------------
Confidence            488  6779999999999998643       599999875531        11  1222221                  


Q ss_pred             ccceEEeeecccccccccCCcEEEE-----------EECCCeEEEEEccCCeEEEEe--------cCCCCCCEEEEEEcc
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVL-----------GTGGGDVLALAVSAGQLKWRL--------SDCHPGGVSAISFAT  127 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~-----------~~~~g~i~iwd~~~~~~~~~~--------~~~h~~~V~~l~~~~  127 (579)
                      .+.++.+.           +..+++           ++.++.+++|++.+.......        ...+...+.+++|+|
T Consensus        75 ~v~s~~~~-----------~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp  143 (365)
T 4h5i_A           75 SPTAIDAS-----------KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR  143 (365)
T ss_dssp             CCCEEEEE-----------TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT
T ss_pred             ceEEEEeC-----------CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC
Confidence            22333332           333444           345777999998765321111        123445699999999


Q ss_pred             CCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEE--eecCCCCE
Q 008058          128 HGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK--FSGHPGAV  202 (579)
Q Consensus       128 ~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~--~~~h~~~v  202 (579)
                      ||+++++++  .|++|++||+.+++.+..+. |...|.+++|+|||+++++++ +.+.+|+..+++.+..  ..+|...|
T Consensus       144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v  222 (365)
T 4h5i_A          144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSL  222 (365)
T ss_dssp             TSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred             CCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCE
Confidence            999977554  68999999999999998886 777899999999999999998 8888998888876543  45788899


Q ss_pred             EEEEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          203 RFMTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       203 ~~l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                      .+++|+|+++++++++. |+    .++.|++...... ......+..+...+.+++|+     |+|++||+|+.||+|+|
T Consensus       223 ~~v~fspdg~~l~~~s~-d~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~V~~~~~S-----pdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          223 SKINFIADDTVLIAASL-KKGKGIVLTKISIKSGNTS-VLRSKQVTNRFKGITSMDVD-----MKGELAVLASNDNSIAL  295 (365)
T ss_dssp             EEEEEEETTEEEEEEEE-SSSCCEEEEEEEEETTEEE-EEEEEEEESSCSCEEEEEEC-----TTSCEEEEEETTSCEEE
T ss_pred             EEEEEcCCCCEEEEEec-CCcceeEEeecccccceec-ceeeeeecCCCCCeEeEEEC-----CCCCceEEEcCCCEEEE
Confidence            99999999999999884 65    6888998776532 11233455566677888898     99999999999999999


Q ss_pred             EECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058          279 WYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       279 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ||+++++.+...                                                      +.+|...|++++||
T Consensus       296 wd~~~~~~~~~~------------------------------------------------------~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          296 VKLKDLSMSKIF------------------------------------------------------KQAHSFAITEVTIS  321 (365)
T ss_dssp             EETTTTEEEEEE------------------------------------------------------TTSSSSCEEEEEEC
T ss_pred             EECCCCcEEEEe------------------------------------------------------cCcccCCEEEEEEC
Confidence            999877654321                                                      12788899999999


Q ss_pred             CCcceeeccccceecccceee
Q 008058          359 QDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      |||++| +|+|.|+++++|++
T Consensus       322 pdg~~l-aS~S~D~tvrvw~i  341 (365)
T 4h5i_A          322 PDSTYV-ASVSAANTIHIIKL  341 (365)
T ss_dssp             TTSCEE-EEEETTSEEEEEEC
T ss_pred             CCCCEE-EEEeCCCeEEEEEc
Confidence            999999 99999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3e-34  Score=319.35  Aligned_cols=250  Identities=13%  Similarity=0.221  Sum_probs=216.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +++|  .+++|+|+|++||+|+.||.|+|||+.++.....+..|...+..                  +.|.+.      
T Consensus        13 ~~~v--~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~------------------~~~s~~------   66 (814)
T 3mkq_A           13 SDRV--KGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA------------------GKFIAR------   66 (814)
T ss_dssp             CSCE--EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE------------------EEEEGG------
T ss_pred             CCce--EEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEE------------------EEEeCC------
Confidence            5678  55699999999999999999999999999999988876655554                  444443      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         +.+|++|+.+|.|++||+.+++.+..+ .+|.+.|++++|+|++++|++++.||.|++||+.++ .....+.+|...
T Consensus        67 ---~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           67 ---KNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             ---GTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred             ---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence               788999999999999999999988766 579999999999999999999999999999999887 677788899999


Q ss_pred             eeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-CCEEEEEEec--CCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          162 ISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-GAVRFMTFSD--NGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-~~v~~l~~~~--~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |.+++|+| +++.+++++  |.|++||+.+++....+..|. ..+..++|+|  +++++++++ .|+.|++||+.+++. 
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-  220 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSC-  220 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEE-
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcE-
Confidence            99999999 888999887  899999999888877776655 8899999999  999999987 799999999988763 


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT  293 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  293 (579)
                          ...+..+...+.++.|+     |++.+|++++.||.|++||..+++.+......
T Consensus       221 ----~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          221 ----VATLEGHMSNVSFAVFH-----PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             ----EEEEECCSSCEEEEEEC-----SSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred             ----EEEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence                34555566677888887     99999999999999999999998877655443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.9e-34  Score=281.42  Aligned_cols=236  Identities=19%  Similarity=0.296  Sum_probs=202.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .++|  .+++|+|+|++|++|+.|+.|++|++.++.    ....+.+|..                  .+.++.|.+   
T Consensus        97 ~~~v--~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~---  153 (340)
T 1got_B           97 SSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG------------------YLSCCRFLD---  153 (340)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS------------------CEEEEEEEE---
T ss_pred             CccE--EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc------------------cEEEEEECC---
Confidence            4567  667999999999999999999999998653    3444444433                  344566654   


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                             ...+++++.|+.|++||+.+++.+..+ .+|.+.|.+++|+|+++++++|+.|++|++||+++++.+.++.+|
T Consensus       154 -------~~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h  225 (340)
T 1got_B          154 -------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH  225 (340)
T ss_dssp             -------TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             -------CCcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Confidence                   345899999999999999999988666 689999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ...|++++|+|++++|++|+  |.|++||+++++.+..+..  +...|.+++|+|+++++++++ .|+.|++||+.+++.
T Consensus       226 ~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~~  304 (340)
T 1got_B          226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKADR  304 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCE
T ss_pred             cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCCeEEEEEcccCcE
Confidence            99999999999999999998  8999999999988877752  335799999999999999988 799999999988763


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                           ...+..+...+.++.|+     |+|.+|++|+.||+|++||
T Consensus       305 -----~~~~~~h~~~v~~~~~s-----~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          305 -----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -----EEEEECCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             -----eeEeecCCCcEEEEEEc-----CCCCEEEEEcCCccEEecC
Confidence                 34555666778888898     9999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.3e-34  Score=289.04  Aligned_cols=282  Identities=12%  Similarity=0.103  Sum_probs=220.3

Q ss_pred             CCcccceEEEEccCC-CEEEEEeCCCcEEEEECCCCeEEEEec--cccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSPAL-DYFAICSGDARIKIWDTLKGQVQTEFA--DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg-~~las~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .+++|+|+| ++|++|+.||.|+|||+.+++....+.  +|..                  .+.+++|.+.+  
T Consensus        73 ~~~v--~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~--  130 (383)
T 3ei3_B           73 DRRV--TSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD------------------AITGMKFNQFN--  130 (383)
T ss_dssp             SSCE--EEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC------------------BEEEEEEETTE--
T ss_pred             CCCE--EEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC------------------ceeEEEeCCCC--
Confidence            4678  566999999 999999999999999999888776654  2333                  45566666532  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                            +..+++++.||.|++||+.+.... .+.  .+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+
T Consensus       131 ------~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  202 (383)
T 3ei3_B          131 ------TNQLFVSSIRGATTLRDFSGSVIQ-VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL  202 (383)
T ss_dssp             ------EEEEEEEETTTEEEEEETTSCEEE-EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             ------CCEEEEEeCCCEEEEEECCCCceE-EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence                  678999999999999999965432 332  345588999999999999999999999999998 6888899999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC----CeeeEEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEc
Q 008058          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSD----HKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~  229 (579)
                      |...|.+++|+|+++ ++++++  +.|++||+++    +..+..+ +|...|.+++|+| ++++|++++ .|+.|++||+
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~-~d~~i~iwd~  280 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD-QRNEIRVYSS  280 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE-SSSEEEEEET
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc-CCCcEEEEEC
Confidence            999999999999999 888887  8999999998    5666666 6999999999999 999999988 6999999999


Q ss_pred             CCCccccceeEEeee--------------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          230 DGVKKQSASCVLAME--------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      ++++...  ......              ++...+..+.++     |++++  +++.||.|++||+.+++.+.....   
T Consensus       281 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s-----~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~---  348 (383)
T 3ei3_B          281 YDWSKPD--QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY-----PDDQL--LLNDKRTIDIYDANSGGLVHQLRD---  348 (383)
T ss_dssp             TBTTSCS--EEEECCBCCCTTSCCCCCEECSSSSEEEEECB-----CCTTT--CTTCCCCEEEEETTTCCEEEEECB---
T ss_pred             CCCcccc--ccccccccccccccceEEeccCCCCceEEEec-----CCccc--ccCCCCeEEEEecCCCceeeeecC---
Confidence            9876431  111000              111122234444     66666  777899999999887765332210   


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                                                                        ..|...+..++|+|||.+| ++++ |+.++
T Consensus       349 --------------------------------------------------~~~~~~~~~~~~s~~g~~l-~s~s-d~~i~  376 (383)
T 3ei3_B          349 --------------------------------------------------PNAAGIISLNKFSPTGDVL-ASGM-GFNIL  376 (383)
T ss_dssp             --------------------------------------------------TTBCSCCCEEEECTTSSEE-EEEE-TTEEE
T ss_pred             --------------------------------------------------CCCCceEEEEEEecCccEE-EEec-CCcEE
Confidence                                                              0134456777999999999 9997 99999


Q ss_pred             ceeee
Q 008058          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       377 iw~~~  381 (383)
T 3ei3_B          377 IWNRE  381 (383)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=9.3e-34  Score=292.64  Aligned_cols=304  Identities=13%  Similarity=0.151  Sum_probs=247.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++++|++|++|+.||+|++||+.++++...+.+|...+.                  ++.|.           +..+++
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~-----------~~~l~s  174 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW------------------SSQMR-----------DNIIIS  174 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEE------------------EEEEE-----------TTEEEE
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEE------------------EEEec-----------CCEEEE
Confidence            5777899999999999999999999999998887665544                  33332           567999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g  171 (579)
                      |+.||.|++||+.+++.+..+ .+|...|.++.|+  ++.+++|+.||+|++||+.+++.+..+.+|...|.++++  ++
T Consensus       175 ~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          175 GSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            999999999999999988766 5899999999995  568999999999999999999999999999999999999  67


Q ss_pred             CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058          172 KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       172 ~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      +++++|+  |.|++||+++++.+.++.+|...|.++.|  ++.++++++ .|+.|++||+++++..     ..+..+...
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~d~~i~i~d~~~~~~~-----~~~~~~~~~  321 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGS-LDTSIRVWDVETGNCI-----HTLTGHQSL  321 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEE-TTSCEEEEETTTCCEE-----EEECCCCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEe-CCCeEEEEECCCCCEE-----EEEcCCccc
Confidence            8888887  89999999999999999999999999999  788999988 7999999999987633     444444444


Q ss_pred             eEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC---ceEEeeecccCcccccccchhhhhccccceecCC
Q 008058          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA---TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      +..+.+       ++.++++++.||.|++||+.+++.+.....   +...+.+.. +  ++.    .+++++.||.++.+
T Consensus       322 v~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~--~~~----~l~s~~~dg~v~iw  387 (445)
T 2ovr_B          322 TSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ-F--NKN----FVITSSDDGTVKLW  387 (445)
T ss_dssp             EEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE-E--CSS----EEEEEETTSEEEEE
T ss_pred             EEEEEE-------eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE-E--CCC----EEEEEeCCCeEEEE
Confidence            554444       567999999999999999999987766543   222222222 2  223    78899888876664


Q ss_pred             ceEEEEEeCCCCCceeEEE-----ecCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008058          327 SVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~  380 (579)
                      +        .........+     .+|...|.+++|+|+|.++ ++++.|++    +.+|++.
T Consensus       388 d--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-a~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          388 D--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             E--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             E--------CCCCceeeeeeccccCCCCceEEEEEecCCEEEE-EEcccCCCCccEEEEEECC
Confidence            4        2223334444     3688889999999999999 99999998    8899874

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-35  Score=298.05  Aligned_cols=241  Identities=8%  Similarity=0.078  Sum_probs=190.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|+++  +|+|+|++||+|+.||.|+|||+.++  ++...+.+|...+..+.|+++                      
T Consensus        11 ~~~v~~~--~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------------------   66 (377)
T 3dwl_C           11 PKPSYEH--AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK----------------------   66 (377)
T ss_dssp             SSCCSCC--EECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT----------------------
T ss_pred             CCcEEEE--EECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC----------------------
Confidence            4688555  99999999999999999999999988  666667666555554444443                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc---eeeE
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS---LLGK  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~  154 (579)
                           +.+|++++.||.|++||+.+++   ....+ .+|...|++++|+|++++|++++.|+.|++||+.+++   ....
T Consensus        67 -----~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           67 -----SNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             -----TCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             -----CCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence                 7789999999999999999887   34333 5799999999999999999999999999999999887   4677


Q ss_pred             eec-CCCCeeEEEEccCCCEEEEEC--CeEEEEECC------------------CCeeeEEeecCCCCEEEEEEecCCCE
Q 008058          155 FRA-STKGISCMAVSSDGKMLATAA--GQLKTFNCS------------------DHKKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       155 ~~~-~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~------------------~~~~~~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      +.. |...|.+++|+|++++|++++  +.|++||++                  .++++..+ +|...|.+++|+|++++
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCE
Confidence            777 899999999999999999988  899999985                  35566677 89999999999999999


Q ss_pred             EEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          214 VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      |++++ .|+.|++||+.+++.. ...+..+..+...+..+.|+     |++++|++++.++.+ +|+..
T Consensus       220 l~~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          220 LAYAG-HDSSVTIAYPSAPEQP-PRALITVKLSQLPLRSLLWA-----NESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEEE-TTTEEC-CEECSTTSC-EEECCCEECSSSCEEEEEEE-----ETTEEEEEESSSSEE-EECCC
T ss_pred             EEEEe-CCCcEEEEECCCCCCc-ceeeEeecCCCCceEEEEEc-----CCCCEEEEEcCCcEE-EEEeC
Confidence            99988 7999999999988752 11134455666667788887     899999998877666 66554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.2e-34  Score=288.57  Aligned_cols=298  Identities=11%  Similarity=0.124  Sum_probs=236.0

Q ss_pred             CCCcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecc
Q 008058            2 GSSNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      +.++|  .+++|+|+    ...+++++.++.|+|||+.+++.+..+..+..             ......+.+++|.+..
T Consensus        17 h~~~v--~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           17 HNQPL--FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-------------ADADENFYTCAWTYDS   81 (366)
T ss_dssp             TCSCE--EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-------------SCTTCCEEEEEEEECT
T ss_pred             CCCce--EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-------------cCCCCcEEEEEeccCC
Confidence            35788  56699984    44566666677999999998887766653321             1123457788888764


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-
Q 008058           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-  155 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~-  155 (579)
                      ..     ++.++++|+.+|.|++||+.+++.+..+ .+|...|++++|+| ++++|++++.||.|++||+.+++.+..+ 
T Consensus        82 ~~-----~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           82 NT-----SHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             TT-----CCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CC-----CCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec
Confidence            21     1568999999999999999999988666 57999999999999 9999999999999999999999998888 


Q ss_pred             --ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee----------------------------cCCCCEE
Q 008058          156 --RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS----------------------------GHPGAVR  203 (579)
Q Consensus       156 --~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~----------------------------~h~~~v~  203 (579)
                        ..|...|.+++|+|+++++++++  |.|++||+++++.+..+.                            +|...|.
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence              67899999999999999999997  899999999876544333                            3999999


Q ss_pred             EEEEecCCCEEEEEecCCCeEEEEEcCCCccc---------cceeEEeeecCceeeEeEEecCCcccCC--CcEEEEEEc
Q 008058          204 FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ---------SASCVLAMEHPAVFMDCRCIDNGGVDDA--GLYVLAISE  272 (579)
Q Consensus       204 ~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~~~  272 (579)
                      +++|+  ++++++++ .|+.|++||+......         ....+..+..+...+..+.|+     |+  +.+|++++.
T Consensus       236 ~~~~~--~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~~~l~~~~~  307 (366)
T 3k26_A          236 CVRWL--GDLILSKS-CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS-----MDFWQKMLALGNQ  307 (366)
T ss_dssp             EEEEE--TTEEEEEC-SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE-----ECTTSSEEEEECT
T ss_pred             EEEEc--CCEEEEEe-cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc-----CCCCCcEEEEEec
Confidence            99999  67888887 7999999999876531         012334444555556667776     77  999999999


Q ss_pred             CCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC--CC
Q 008058          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN--SG  350 (579)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h--~~  350 (579)
                      ||.|++||+.+++.....                                                   ...+.+|  ..
T Consensus       308 dg~i~vwd~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~  336 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAK---------------------------------------------------CTTLTHHKCGA  336 (366)
T ss_dssp             TSCEEEEECCSSSGGGCE---------------------------------------------------EEEECCTTCCS
T ss_pred             CCcEEEEECCCCCCcccc---------------------------------------------------ceEEcccccCC
Confidence            999999998776432110                                                   0123344  67


Q ss_pred             CcEEEeecCCcceeeccccceecccceeee
Q 008058          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .|.+++|+|||++| ++++.|+.+++|++.
T Consensus       337 ~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          337 AIRQTSFSRDSSIL-IAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEEEEEECTTSSEE-EEEETTSEEEEEEC-
T ss_pred             ceEEEEeCCCCCeE-EEEeCCCEEEEEEec
Confidence            89999999999999 999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.6e-34  Score=333.10  Aligned_cols=338  Identities=18%  Similarity=0.226  Sum_probs=266.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++||+|+.||+|+|||+.+++++..+.+|...+..+.|+++                  .    
T Consensus       656 h~~~v--~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------~----  711 (1249)
T 3sfz_A          656 HEDEV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK------------------S----  711 (1249)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------S----
T ss_pred             CCCCE--EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC------------------C----
Confidence            35678  66699999999999999999999999999999998877665554444432                  1    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----  156 (579)
                         +..++++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+++++++++.||+|++||+.+++....+.     
T Consensus       712 ---~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~  787 (1249)
T 3sfz_A          712 ---NHLLLATGSNDFFLKLWDLNQKECRNTM-FGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF  787 (1249)
T ss_dssp             ---SCCEEEEEETTSCEEEEETTSSSEEEEE-CCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC
T ss_pred             ---CceEEEEEeCCCeEEEEECCCcchhhee-cCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccc
Confidence               1568999999999999999999988666 5799999999999999999999999999999987765443321     


Q ss_pred             --------------------------------------------------cCCCCeeEEEEccCCCEEEEEC--CeEEEE
Q 008058          157 --------------------------------------------------ASTKGISCMAVSSDGKMLATAA--GQLKTF  184 (579)
Q Consensus       157 --------------------------------------------------~~~~~v~~l~~~p~g~~l~~~~--g~i~vw  184 (579)
                                                                        +|...|.+++|+|+++++++++  |.|++|
T Consensus       788 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw  867 (1249)
T 3sfz_A          788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW  867 (1249)
T ss_dssp             --------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEE
T ss_pred             cccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence                                                              5667899999999999999998  899999


Q ss_pred             ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce--------------------------
Q 008058          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------------------  238 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------------------  238 (579)
                      |+.+++.+..+.+|...|.+++|+|+++++++++ .|+.|++|++.........                          
T Consensus       868 d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  946 (1249)
T 3sfz_A          868 NIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL  946 (1249)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred             EcCCCceeeecCCCccceEEEEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence            9999999999999999999999999999999998 7999999997642111000                          


Q ss_pred             eEE------eeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          239 CVL------AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       239 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      ...      ........+.+++++     |++.++++|+.||.|++||+.+++.+.....+...+.+.. ++++++    
T Consensus       947 ~~~~~~~~~~~~~~~~~i~~~~~s-----p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~---- 1016 (1249)
T 3sfz_A          947 QLIAGKTGQIDYLPEAQVSCCCLS-----PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGK---- 1016 (1249)
T ss_dssp             EEEEESSCCEEEECCSCEEEEEEC-----TTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSS----
T ss_pred             EEEecCcceEEEcccCcEEEEEEc-----CCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCC----
Confidence            000      000122346677787     9999999999999999999999887766555544443333 566666    


Q ss_pred             hhhhccccceecCCc---------------------------------eEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          313 AIFAAKLQDIVKPAS---------------------------------VHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~---------------------------------~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                      .+++++.|+.++.++                                 +.+.+ +..........+.+|...|.+++|+|
T Consensus      1017 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~v-wd~~~~~~~~~~~~~~~~v~~~~~s~ 1095 (1249)
T 3sfz_A         1017 TLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV-WNVITGRIERDFTCHQGTVLSCAISS 1095 (1249)
T ss_dssp             CEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEE-EETTTTCCCEEEECCSSCCCCEEECS
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEE-EECCCCceeEEEcccCCcEEEEEECC
Confidence            777887777665443                                 11111 11122345567788999999999999


Q ss_pred             Ccceeeccccceecccceeee
Q 008058          360 DGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       360 dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      ||.++ ++++.|+++++|++.
T Consensus      1096 d~~~l-~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A         1096 DATKF-SSTSADKTAKIWSFD 1115 (1249)
T ss_dssp             SSSSC-EEECCSSCCCEECSS
T ss_pred             CCCEE-EEEcCCCcEEEEECC
Confidence            99999 999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=307.25  Aligned_cols=309  Identities=12%  Similarity=0.000  Sum_probs=213.6

Q ss_pred             EEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058           22 ICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        22 s~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      +++.|++|+|||+.++++.    ..+..|.                  ..+..++|.|....   ..++.+|++++.||.
T Consensus       178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~------------------~~V~~v~wsp~~~~---~~~~~~LAs~s~Dgt  236 (524)
T 2j04_B          178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSF------------------GEVWDLKWHEGCHA---PHLVGCLSFVSQEGT  236 (524)
T ss_dssp             ----CEEEEEEEEETTTCCEEEEEEEEECC------------------CSEEEEEECSSCCC---SSSSCEEEEEETTSC
T ss_pred             cCCCCceEEEEEccCCCCCceEEEEEEecC------------------CcEEEEEECCCCCC---CCCCceEEEEecCCe
Confidence            3557889999999877642    2222222                  23556677664100   001578999999999


Q ss_pred             EEEEEccCCeEE----------EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEeecCCCCeeEE-
Q 008058           98 VLALAVSAGQLK----------WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFRASTKGISCM-  165 (579)
Q Consensus        98 i~iwd~~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~l-  165 (579)
                      |++||+.++...          .....+|...|++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++ 
T Consensus       237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            999999876421          01236799999999999864 89999999999999998774 456688999999999 


Q ss_pred             -EEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCC--CEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          166 -AVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPG--AVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       166 -~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                       +|+|+| .+|++|+  ++|++||+++++++.++.+|..  .|.+++|+|+++.+++++ .|++|++||++.+...    
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~----  390 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAV----  390 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCC----
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccc----
Confidence             578888 8999988  9999999999888878877764  588999999999988887 7999999999987643    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce-----EEeeecccCcccccccchhh
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK-----ILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i  314 (579)
                       ..+..+...+..++|+     |+|.+|++|+.||+|++||.... .+..++...     ..+.... ++++++    .+
T Consensus       391 -~~l~gH~~~V~sva~S-----p~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~-~sp~g~----~~  458 (524)
T 2j04_B          391 -HPLVSRETTITAIGVS-----RLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWD-YSIKDD----KY  458 (524)
T ss_dssp             -EEEEECSSCEEEEECC-----SSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECB-CCSSSC----EE
T ss_pred             -eeeecCCCceEEEEeC-----CCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEec-cCCCCC----eE
Confidence             3344456667788888     99999999999999999998654 333222111     0111221 455543    11


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc---eeeccccceecccceeee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV---LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~---~l~~s~s~d~~~~~w~~~  380 (579)
                      . .  .+..+.+.   +.    .......++.+|...|.+++|+|++.   ++ ++|+.|+++|+|++.
T Consensus       459 ~-~--~~~~~~~~---~~----~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~l-Asg~~~g~vrlw~l~  516 (524)
T 2j04_B          459 R-I--DSSYEVYP---LT----VNDVSKAKIDAHGINITCTKWNETSAGGKCY-AFSNSAGLLTLEYLS  516 (524)
T ss_dssp             E-E--CCCCCCCC--------------------CCCSCCCEEECCSTTTTTEE-EEECTTSEEEEEECS
T ss_pred             E-c--cCCceecc---cc----cCCcceeeecCCCceEEEEECCCCCCccHHH-HhhccCceEEEEEcc
Confidence            1 1  11111100   00    01234456778999999999999964   88 999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=286.25  Aligned_cols=308  Identities=12%  Similarity=0.114  Sum_probs=233.2

Q ss_pred             CCcccceEEEEccCCCEE-EEEeC---CCcEEEEECCCCeEEEEec-cccccccccccccccccccccCccceEEeeecc
Q 008058            3 SSNIRDILTSFSPALDYF-AICSG---DARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~l-as~s~---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      ..+|  .+++|+|++..+ ++|+.   ||.|+|||+.+++...... .|.                  ..+.++.|.+..
T Consensus        18 ~~~v--~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~   77 (357)
T 3i2n_A           18 NYTV--FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKA------------------KPIKCGTFGATS   77 (357)
T ss_dssp             SSCE--EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEES------------------SCEEEEECTTCC
T ss_pred             CCce--EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeeccc------------------CcEEEEEEcCCC
Confidence            4678  566999999655 56655   8999999999888654432 232                  345566666643


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCCCCEEEEEE------ccCCCEEEEEeCCCcEEEEeCCCCc
Q 008058           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHPGGVSAISF------ATHGSCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~~~V~~l~~------~~~~~~l~s~~~dg~v~iwd~~~~~  150 (579)
                      ++      +.++++|+.+|.|++||+.+++ .+..+ .+|...|.++.|      +|++++|++++.||.|++||+.+++
T Consensus        78 ~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A           78 LQ------QRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             TT------TCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             CC------CceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            22      5789999999999999999987 55444 689999999954      6899999999999999999999887


Q ss_pred             -eeeEeecCCC----CeeEEE----EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec---CCCEEEE
Q 008058          151 -LLGKFRASTK----GISCMA----VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD---NGKYVLS  216 (579)
Q Consensus       151 -~~~~~~~~~~----~v~~l~----~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s  216 (579)
                       .+..+..|.+    .+.+++    |+|+++++++++  |.|++||+++++.... ..|...|.+++|+|   ++.++++
T Consensus       151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~  229 (357)
T 3i2n_A          151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA  229 (357)
T ss_dssp             SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred             CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence             6777766554    889998    788999999987  8999999999987544 56899999999999   8999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      ++ .|+.|++||++.++............+...+..+.|+     |++. +|++++.||.|++||++++.......    
T Consensus       230 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----  299 (357)
T 3i2n_A          230 TS-LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL-----PQNRELFLTAGGAGGLHLWKYEYPIQRSKKD----  299 (357)
T ss_dssp             EE-STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE-----TTEEEEEEEEETTSEEEEEEEECCSCC--CC----
T ss_pred             EC-CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC-----CCCCcEEEEEeCCCcEEEeecCCCccccccc----
Confidence            87 7999999999887654221222333556667778887     8888 89999999999999987665432111    


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                               ..+.    ..          ...+         .......+.+|...|.+++|+|+|.++++|++.|+.++
T Consensus       300 ---------~~g~----~~----------~~~~---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~  347 (357)
T 3i2n_A          300 ---------SEGI----EM----------GVAG---------SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR  347 (357)
T ss_dssp             ---------TTSC----CC----------CCCC---------EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             ---------CCCC----cc----------cccc---------ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence                     1111    00          0001         11234467789999999999999999933899999999


Q ss_pred             ceeee
Q 008058          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       348 iw~~~  352 (357)
T 3i2n_A          348 VLIVT  352 (357)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            99985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.8e-33  Score=285.78  Aligned_cols=304  Identities=15%  Similarity=0.156  Sum_probs=235.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeee
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      +.++|  .+++|+|  ++|++|+.||+|+|||+.+++      ....+..|..                  .+.++.|.+
T Consensus        15 h~~~i--~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~   72 (397)
T 1sq9_A           15 HDADI--FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------------------GLHHVDVLQ   72 (397)
T ss_dssp             SSSCE--EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTT------------------CEEEEEEEE
T ss_pred             hhcCe--EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCC------------------cEEEEEEec
Confidence            45788  5669998  799999999999999999887      5555554433                  455677766


Q ss_pred             cccccccccCC---cEEEEEECCCeEEEEEccCCeE-----EEEecCCC-----CCCEEEEEEc----cCCCE-EEEEeC
Q 008058           76 VDRKKKRKLGS---SLLVLGTGGGDVLALAVSAGQL-----KWRLSDCH-----PGGVSAISFA----THGSC-IYSAGA  137 (579)
Q Consensus        76 ~~~~~~~~~~~---~~l~~~~~~g~i~iwd~~~~~~-----~~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~~~  137 (579)
                      ....     ++   .+|++++.+|.|++||+.+++.     ...+ ..|     ...|.+++|+    |++++ |++++.
T Consensus        73 ~~~~-----~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~  146 (397)
T 1sq9_A           73 AIER-----DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV  146 (397)
T ss_dssp             EEET-----TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC----CEEEEEEET
T ss_pred             cccc-----CCccccEEEEEcCCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCCCCceEEEEEeC
Confidence            4100     14   6899999999999999998875     5444 567     5899999999    99999 999999


Q ss_pred             CCcEEEEeCCC------Cceee-----Eee-------cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058          138 DGMVCEIDPLT------GSLLG-----KFR-------ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       138 dg~v~iwd~~~------~~~~~-----~~~-------~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~  197 (579)
                      ||.|++||+.+      ++.+.     .+.       .|...|.+++|+|++ ++++++  |.|++||+++++.+..+..
T Consensus       147 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          147 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES  225 (397)
T ss_dssp             TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence            99999999988      66666     774       378899999999999 999988  8999999999999999998


Q ss_pred             ---C---CCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeeec-------------CceeeEeEEe
Q 008058          198 ---H---PGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEH-------------PAVFMDCRCI  255 (579)
Q Consensus       198 ---h---~~~v~~l~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  255 (579)
                         |   ...|.+++|+|++++|++++ .|   +.|++||+++++..     ..+..             +...+..+.|
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~  299 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERI-----GSLSVPTHSSQASLGEFAHSSWVMSLSF  299 (397)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEE-----EEECBC--------CCBSBSSCEEEEEE
T ss_pred             cccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCccc-----ceeccCcccccccccccccCCcEEEEEE
Confidence               9   99999999999999999988 68   99999999987633     34443             5566778888


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeC
Q 008058          256 DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYG  335 (579)
Q Consensus       256 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g  335 (579)
                      +     |++.+|++++.||.|++||+.+++.+.......         ......  ..    ..              .|
T Consensus       300 ~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~--~~----~~--------------~g  345 (397)
T 1sq9_A          300 N-----DSGETLCSAGWDGKLRFWDVKTKERITTLNMHC---------DDIEIE--ED----IL--------------AV  345 (397)
T ss_dssp             C-----SSSSEEEEEETTSEEEEEETTTTEEEEEEECCG---------GGCSSG--GG----CC--------------CB
T ss_pred             C-----CCCCEEEEEeCCCeEEEEEcCCCceeEEEeccc---------Ccccch--hh----hh--------------cc
Confidence            7     999999999999999999999887665443100         000000  00    00              00


Q ss_pred             CCCCceeEEEecCCCCcEEEeecCCc----------ceeeccccceecccceeee
Q 008058          336 LLLKPSFQKILVNSGEDINLNCSQDG----------VLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       336 ~~~~~~~~~~~~h~~~v~~~~~s~dg----------~~l~~s~s~d~~~~~w~~~  380 (579)
                      ..     ....+|...|.+++|+|||          .+| ++++.|+.+++|++.
T Consensus       346 ~~-----~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l-~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          346 DE-----HGDSLAEPGVFDVKFLKKGWRSGMGADLNESL-CCVCLDRSIRWFREA  394 (397)
T ss_dssp             CT-----TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEE-EEEETTTEEEEEEEE
T ss_pred             cc-----ccccccCCceeEEEeccccccccccccccceE-EEecCCCcEEEEEcC
Confidence            00     0123578899999999999          688 999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-33  Score=274.34  Aligned_cols=247  Identities=16%  Similarity=0.206  Sum_probs=196.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC--CeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK--GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +..+|  .+++|+|+|++||+|+.|++|+|||+.+  ++++..+.+|...+..                  ++|.++.  
T Consensus         8 h~~~V--~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~------------------v~~s~~~--   65 (297)
T 2pm7_B            8 HNEMI--HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWR------------------VDWAHPK--   65 (297)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEE------------------EEECCGG--
T ss_pred             CcCce--EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEE------------------EEecCCC--
Confidence            45678  4559999999999999999999999974  3566777766655554                  4443321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~  153 (579)
                           .+.+|++|+.||.|++||+.+++  .+.. ..+|...|.+++|+|+  |.+|++++.|++|++||++++.  ...
T Consensus        66 -----~g~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  139 (297)
T 2pm7_B           66 -----FGTILASCSYDGKVMIWKEENGRWSQIAV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI  139 (297)
T ss_dssp             -----GCSEEEEEETTTEEEEEEBSSSCBCCCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCE
T ss_pred             -----cCCEEEEEcCCCEEEEEEcCCCceEEEEE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeee
Confidence                 16789999999999999999874  3323 3579999999999997  8899999999999999998763  245


Q ss_pred             EeecCCCCeeEEEEccC-------------CCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCC---
Q 008058          154 KFRASTKGISCMAVSSD-------------GKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNG---  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~-------------g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~---  211 (579)
                      .+.+|...|.+++|+|+             +++|++|+  +.|++||+++++    ...++.+|...|.+++|+|++   
T Consensus       140 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~  219 (297)
T 2pm7_B          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (297)
T ss_dssp             EEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence            67889999999999997             56899887  899999998765    567889999999999999985   


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      .+|++++ .|++|++||++...............+...+..+.|+     |+|++|++++.||.|++|+..
T Consensus       220 ~~las~s-~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          220 SYMASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEEC
T ss_pred             eEEEEEE-CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEEC-----CCCCEEEEEcCCCcEEEEEEC
Confidence            7888887 7999999999875321100111112334556677887     999999999999999999865

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=313.68  Aligned_cols=197  Identities=14%  Similarity=0.137  Sum_probs=167.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++||+|+.||+|+||+..+++....+. |                  ...+.+++|.+       
T Consensus        17 ~~~V--~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~------------------~~~V~~l~fsp-------   68 (902)
T 2oaj_A           17 SSKP--IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-D------------------RSAIKEMRFVK-------   68 (902)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-S------------------CCCEEEEEEET-------
T ss_pred             CCCc--EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-C------------------CCCEEEEEEcC-------
Confidence            4678  566999999999999999999999998877655432 2                  23456677766       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----------
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----------  152 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----------  152 (579)
                         +.+|++++.|+.|++||+.+++++..+.  |.+.|++++|+|+++++++|+.||+|++||+.+++..          
T Consensus        69 ---g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           69 ---GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             ---TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             ---CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc
Confidence               3479999999999999999999887763  6789999999999999999999999999999988753          


Q ss_pred             -eEeecCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecC------------------CCCEEEEEEecC
Q 008058          153 -GKFRASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGH------------------PGAVRFMTFSDN  210 (579)
Q Consensus       153 -~~~~~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------------------~~~v~~l~~~~~  210 (579)
                       ..+.+|.++|.+++|+|+ +..+++|+  |.| +||+++++.+..+.+|                  ...|.+++|+|+
T Consensus       144 ~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd  222 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN  222 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred             ccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence             234668889999999996 46788887  899 9999999998888766                  577999999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCcc
Q 008058          211 GKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      |++|++++ .|++|++||+++++.
T Consensus       223 g~~lasgs-~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          223 SLHIITIH-EDNSLVFWDANSGHM  245 (902)
T ss_dssp             SSEEEEEE-TTCCEEEEETTTCCE
T ss_pred             CCEEEEEE-CCCeEEEEECCCCcE
Confidence            99999998 799999999987653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.8e-33  Score=280.30  Aligned_cols=241  Identities=20%  Similarity=0.277  Sum_probs=203.1

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|+|||++||+|+.||+|+|||+.+++....+.+|...+..+.|+++                           +..
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~---------------------------~~~  179 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS---------------------------GDK  179 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCC---------------------------CCE
Confidence            45699999999999999999999999999999888877766665555554                           788


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-------ecCCC
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-------RASTK  160 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~~  160 (579)
                      |++|+.|+.|++||+.++++...+  .+...+.+++|+| ++++|++|+.||.|++||+.+++.+..+       .+|..
T Consensus       180 l~s~s~d~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~  257 (393)
T 1erj_A          180 LVSGSGDRTVRIWDLRTGQCSLTL--SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD  257 (393)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             EEEecCCCcEEEEECCCCeeEEEE--EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCC
Confidence            999999999999999999987665  3667899999999 8999999999999999999999887776       56888


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCC------------eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDH------------KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      .|.+++|+|+|++|++|+  +.|++||+++.            .+...+.+|...|.+++|+|++++|++++ .|+.|++
T Consensus       258 ~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~i  336 (393)
T 1erj_A          258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLF  336 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEE
Confidence            999999999999999998  89999999753            34567889999999999999999999988 7999999


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEEecC-CcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDN-GGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ||+.+++.     +..+..+...+..+.+++ ..++|++.+|++|+.||+|++|+++..
T Consensus       337 wd~~~~~~-----~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          337 WDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EECCCCeE-----EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99998763     344555555556666653 234568999999999999999997543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=292.00  Aligned_cols=257  Identities=12%  Similarity=0.170  Sum_probs=196.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-----------EEEEeccccccccccccccccccccccCccceE
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-----------VQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|  .+++|+|+|++||+|+.||.|+|||+.++.           ....+.+|.......      ........++++
T Consensus        28 ~~~V--~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------~~~~~~~~V~~l   99 (447)
T 3dw8_B           28 ADII--STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYL------KSLEIEEKINKI   99 (447)
T ss_dssp             GGSE--EEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGG------GTEEECCCCCEE
T ss_pred             cCcE--EEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccccccccccc------ccccccCceEEE
Confidence            3678  566999999999999999999999998876           466666554211000      000012456777


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE---------------------------------------EEe
Q 008058           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK---------------------------------------WRL  112 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~---------------------------------------~~~  112 (579)
                      +|.+...       ...+++++.||.|++||+.++...                                       ..+
T Consensus       100 ~~~~~~~-------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (447)
T 3dw8_B          100 RWLPQKN-------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF  172 (447)
T ss_dssp             EECCCCS-------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred             EEcCCCC-------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence            8877521       268999999999999999875542                                       133


Q ss_pred             cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cceee-------EeecCCCCeeEEEEccCC-CEEEEEC--CeE
Q 008058          113 SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLG-------KFRASTKGISCMAVSSDG-KMLATAA--GQL  181 (579)
Q Consensus       113 ~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~p~g-~~l~~~~--g~i  181 (579)
                      ..+|...|++++|+|++++|++| .|+.|++||+.+ ++.+.       .+.+|...|++++|+|++ +++++|+  |.|
T Consensus       173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            46899999999999999999998 899999999984 44444       256788999999999998 8999988  899


Q ss_pred             EEEECCCCee----eEEeecCCC------------CEEEEEEecCCCEEEEEecCCCeEEEEEcCC-CccccceeEEeee
Q 008058          182 KTFNCSDHKK----MQKFSGHPG------------AVRFMTFSDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAME  244 (579)
Q Consensus       182 ~vwd~~~~~~----~~~~~~h~~------------~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~  244 (579)
                      ++||+++++.    +..+.+|..            .|.+++|+|++++|++++ . +.|++||++. ++..     ..+.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~-~~v~iwd~~~~~~~~-----~~~~  324 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-Y-LSVKVWDLNMENRPV-----ETYQ  324 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-S-SEEEEEETTCCSSCS-----CCEE
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-C-CeEEEEeCCCCcccc-----ceee
Confidence            9999999887    788888876            899999999999999887 5 9999999987 4432     2233


Q ss_pred             cCceee---------------EeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          245 HPAVFM---------------DCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       245 ~~~~~~---------------~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      .+....               ..++|+     |++.+|++++.||.|++||+.+++.+
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s-----~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWN-----GSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEEC-----TTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccccceEEEEC-----CCCCEEEEeccCCEEEEEEcCCCcce
Confidence            232211               126676     99999999999999999999988765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.5e-33  Score=299.49  Aligned_cols=330  Identities=11%  Similarity=0.045  Sum_probs=253.8

Q ss_pred             CCcccceEEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .++|  .+++|+|+++ ++++++.||.|++||..+++....+..|..               ....+.+++|.+.+    
T Consensus       160 ~~~v--~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~----  218 (615)
T 1pgu_A          160 SQRI--NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK---------------QGSFVRDVEFSPDS----  218 (615)
T ss_dssp             SSCE--EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC---------------TTCCEEEEEECSTT----
T ss_pred             CccE--EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC---------------CCceEEEEEECCCC----
Confidence            4567  5569999998 899999999999999999999888875543               01134566666542    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++++.+|.|++||+.+++.+..+..   +|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+
T Consensus       219 ----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          219 ----GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             ----CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ----CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence                57899999999999999999998877745   799999999999 9999999999999999999999999988876


Q ss_pred             C----CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecC----------------------
Q 008058          159 T----KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN----------------------  210 (579)
Q Consensus       159 ~----~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~----------------------  210 (579)
                      .    ..+.++.|+ +++++++++  |.|++||+.+++.+..+.+|...|.+++| |+                      
T Consensus       294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~  371 (615)
T 1pgu_A          294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH  371 (615)
T ss_dssp             TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred             CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence            3    578888886 788888887  89999999998888888877777766666 44                      


Q ss_pred             -----------CCEEEEEecCCCeEEEEEcCCCcc---------------------------------------------
Q 008058          211 -----------GKYVLSSAVGERYIALWRTDGVKK---------------------------------------------  234 (579)
Q Consensus       211 -----------~~~l~s~s~~d~~i~vwd~~~~~~---------------------------------------------  234 (579)
                                 +..+++++ .|+.+++|++..++.                                             
T Consensus       372 ~~~v~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          372 SNLIVSLDNSKAQEYSSIS-WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CSCEEEEECCSTTCCEEEE-TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             cCceEEEEECCCcEEEEEe-CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                       45555555 466666665542110                                             


Q ss_pred             ---------------ccce---------eE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          235 ---------------QSAS---------CV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       235 ---------------~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                                     ....         .. ..+..+...+..+.|+     |++++|++++.||.|++||+.+++.+..
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~~~~~  525 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-----PSETYIAAGDVMGKILLYDLQSREVKTS  525 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEEC-----CCCCEEEEcCCCCeEEEeeCCCCcceeE
Confidence                           0000         00 2223344556777787     9999999999999999999999998877


Q ss_pred             cCC-ceEEeeecccCcc----------cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeec
Q 008058          290 TKA-TKILSSSEDVNSK----------SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCS  358 (579)
Q Consensus       290 ~~~-~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s  358 (579)
                      ... +...+.+.. |++          +++    .+++++.|+.++.++.       .........+.+|...|.+++|+
T Consensus       526 ~~~~h~~~v~~~~-~sp~~~~~~~~~~~~~----~l~~~~~dg~i~iw~~-------~~~~~~~~~~~~h~~~v~~l~~s  593 (615)
T 1pgu_A          526 RWAFRTSKINAIS-WKPAEKGANEEEIEED----LVATGSLDTNIFIYSV-------KRPMKIIKALNAHKDGVNNLLWE  593 (615)
T ss_dssp             CSCCCSSCEEEEE-ECCCC------CCSCC----EEEEEETTSCEEEEES-------SCTTCCEEETTSSTTCEEEEEEE
T ss_pred             eecCCCCceeEEE-EcCccccccccccCCC----EEEEEcCCCcEEEEEC-------CCCceechhhhcCccceEEEEEc
Confidence            654 433333333 566          666    8999999886666441       11124566778999999999999


Q ss_pred             CCcceeeccccceecccceeee
Q 008058          359 QDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       359 ~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      |||. | ++++.|+++++|++.
T Consensus       594 ~~~~-l-~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          594 TPST-L-VSSGADACIKRWNVV  613 (615)
T ss_dssp             ETTE-E-EEEETTSCEEEEEEC
T ss_pred             CCCC-e-EEecCCceEEEEeee
Confidence            9999 8 999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-32  Score=269.57  Aligned_cols=240  Identities=19%  Similarity=0.225  Sum_probs=202.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++|+.|++|+|||+.++++...+.+|...+..+.|+++                        
T Consensus        65 ~~~v--~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------  118 (319)
T 3frx_A           65 SHIV--QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK------------------------  118 (319)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred             cccE--EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCC------------------------
Confidence            4677  55699999999999999999999999999999999888776666555554                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC------CCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH------GSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                         +.++++|+.|+.|++||+... .+..+ .+|...|.++.|+|.      +..+++++.|++|++||+.+++....+.
T Consensus       119 ---~~~l~s~s~D~~i~vwd~~~~-~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  193 (319)
T 3frx_A          119 ---ASMIISGSRDKTIKVWTIKGQ-CLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI  193 (319)
T ss_dssp             ---SCEEEEEETTSCEEEEETTSC-EEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             ---CCEEEEEeCCCeEEEEECCCC-eEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec
Confidence               788999999999999999754 44444 579999999999985      4489999999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      +|...|.+++|+|+|++|++++  |.|++||+.+++.+.++.. ...|.+++|+|++.++++++  ++.+++|++.....
T Consensus       194 ~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~--~~~i~v~~~~~~~~  270 (319)
T 3frx_A          194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAAT--ATGIKVFSLDPQYL  270 (319)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEE--TTEEEEEEETTEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEc--CCCcEEEEeCcCee
Confidence            9999999999999999999998  8999999999999998875 46899999999999988775  56699999987542


Q ss_pred             ccceeEEe------eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          235 QSASCVLA------MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       235 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ..   ...      ...+...+..++|+     |+|++|++|+.||.|++||+.++
T Consensus       271 ~~---~~~~~~~~~~~~~~~~v~~~~~s-----pdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          271 VD---DLRPEFAGYSKAAEPHAVSLAWS-----ADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EE---EECCCCTTCCGGGCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ee---ccCccccccccCcCcceeEEEEC-----CCCCEEEEeecCceEEEEEEeec
Confidence            21   010      01123345567887     99999999999999999998764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-32  Score=278.88  Aligned_cols=276  Identities=15%  Similarity=0.183  Sum_probs=227.3

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|++  +.+++++.||.|++||..+++....+...                 ....+++++|.+.         +.+
T Consensus        97 ~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~-----------------~~~~v~~v~~s~~---------~~~  148 (401)
T 4aez_A           97 NLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETD-----------------ESTYVASVKWSHD---------GSF  148 (401)
T ss_dssp             BCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECC-----------------TTCCEEEEEECTT---------SSE
T ss_pred             EEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecC-----------------CCCCEEEEEECCC---------CCE
Confidence            4446654  56888889999999999999987766531                 1234556666653         788


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCceeeEeecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~l~~  167 (579)
                      |++|+.+|.|++||+.+++.+..+ .+|...|.+++|  +++++++++.||.|++||++ .+..+..+.+|...|.+++|
T Consensus       149 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  225 (401)
T 4aez_A          149 LSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW  225 (401)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEE
Confidence            999999999999999999988766 589999999999  56799999999999999998 56778889999999999999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      +|+++++++|+  |.|++||+++++.+..+.+|...|.+++|+|++..++++++  .|+.|++||+.+++..     ..+
T Consensus       226 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-----~~~  300 (401)
T 4aez_A          226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-----NTV  300 (401)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-----EEE
T ss_pred             cCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-----EEE
Confidence            99999999998  89999999999999999999999999999998766655543  5999999999987633     344


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccc
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQD  321 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  321 (579)
                      .++ ..+..+.|+     |++.++++++  .||.|++||+.+++....                                
T Consensus       301 ~~~-~~v~~~~~s-----~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~--------------------------------  342 (401)
T 4aez_A          301 DAG-SQVTSLIWS-----PHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ--------------------------------  342 (401)
T ss_dssp             ECS-SCEEEEEEC-----SSSSEEEEEECTTTCEEEEEEEETTEEEEE--------------------------------
T ss_pred             eCC-CcEEEEEEC-----CCCCeEEEEeecCCCcEEEEecCCccceeE--------------------------------
Confidence            444 346677787     9999999954  899999999765432110                                


Q ss_pred             eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          322 IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                           ..+.+|...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       343 ---------------------~~~~~h~~~v~~~~~s~dg~~l-~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          343 ---------------------VDIPAHDTRVLYSALSPDGRIL-STAASDENLKFWRVY  379 (401)
T ss_dssp             ---------------------EEEECCSSCCCEEEECTTSSEE-EEECTTSEEEEEECC
T ss_pred             ---------------------EEecCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEECC
Confidence                                 0234688899999999999999 999999999999984

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.6e-32  Score=279.56  Aligned_cols=273  Identities=15%  Similarity=0.243  Sum_probs=221.8

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++||++ +.||+|. |++|+|||..+|++...++.+.               | ...+++++|.+.         +.+|+
T Consensus       111 l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~---------------~-~~~V~sv~fspd---------g~~la  163 (420)
T 4gga_A          111 VDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQ---------------P-GEYISSVAWIKE---------GNYLA  163 (420)
T ss_dssp             EEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCS---------------T-TCCEEEEEECTT---------SSEEE
T ss_pred             EEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecC---------------C-CCcEEEEEECCC---------CCEEE
Confidence            599976 5788776 9999999999999887765321               1 224556666553         88999


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p  169 (579)
                      +|+.||.|++||+.+++.+..+ .+|...+.++.+  ++..+++|+.|+.+++||.... ..+.++.+|...+..+.++|
T Consensus       164 sgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          164 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            9999999999999999998766 689999999887  5679999999999999998764 55677899999999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecCCCEE-EEE-ecCCCeEEEEEcCCCccccceeEE
Q 008058          170 DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDNGKYV-LSS-AVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~l-~s~-s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +|+++++++  +.+++|+..+++    .+.....|...|.+++|+|++..+ +++ ++.|++|++||+.+++..     .
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-----~  315 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S  315 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-----E
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-----e
Confidence            999999998  899999998764    356778899999999999976544 443 347999999999988633     4


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      .+..+...... .|.     |++..+++++  .||.|+|||+.+++.+.                               
T Consensus       316 ~~~~~~~v~~~-~~~-----~~~~~lv~~sg~~d~~I~iwd~~~~~~v~-------------------------------  358 (420)
T 4gga_A          316 AVDAHSQVCSI-LWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-------------------------------  358 (420)
T ss_dssp             EEECSSCEEEE-EEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred             eeccccceeee-eec-----CCCCeEEEEEecCCCEEEEEECCCCcEEE-------------------------------
Confidence            45555555544 454     7888888775  69999999987654321                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                              ++.+|...|.+++|+|||.+| +|||.|+++++|++.
T Consensus       359 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWdv~  394 (420)
T 4gga_A          359 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF  394 (420)
T ss_dssp             ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred             ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence                                    345788999999999999999 999999999999983

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.2e-32  Score=283.99  Aligned_cols=306  Identities=12%  Similarity=0.179  Sum_probs=236.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ++++++++|++|+.||+|++||+.+++....+.+|...+..+.|+++                           + .+++
T Consensus       127 ~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~---------------------------~-~l~s  178 (464)
T 3v7d_B          127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG---------------------------G-ILVS  178 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST---------------------------T-EEEE
T ss_pred             EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC---------------------------C-EEEE
Confidence            44557889999999999999999999999999877766655444433                           3 7999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeCCCcEEEEeCCCCce------------------
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGADGMVCEIDPLTGSL------------------  151 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~dg~v~iwd~~~~~~------------------  151 (579)
                      |+.||.|++||+.+++.+..+ .+|.+.|.+++|+  ++++++++++.||+|++||+.++..                  
T Consensus       179 ~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          179 GSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            999999999999999988666 6799999999998  5778999999999999999987652                  


Q ss_pred             -----eeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          152 -----LGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       152 -----~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                           +..+.+|...+.++  +++++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .|+.|
T Consensus       258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i  334 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTI  334 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCE
T ss_pred             CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcE
Confidence                 45677788888776  57788999988  8999999999999999999999999999999999999988 79999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc-eEEeeecccC
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT-KILSSSEDVN  303 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~  303 (579)
                      ++||+++++     ++..+..+...+..+.++       +.+|++++.||.|++||+.++......... .....   .+
T Consensus       335 ~vwd~~~~~-----~~~~~~~h~~~v~~~~~~-------~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~~  399 (464)
T 3v7d_B          335 RIWDLENGE-----LMYTLQGHTALVGLLRLS-------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT---TF  399 (464)
T ss_dssp             EEEETTTTE-----EEEEECCCSSCEEEEEEC-------SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEE---EE
T ss_pred             EEEECCCCc-----EEEEEeCCCCcEEEEEEc-------CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEE---EE
Confidence            999999876     345566666667777774       589999999999999999987655432211 11111   13


Q ss_pred             cccccccchhhhhccccceecCCceEEEEEeCCCCCceeEE-EecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          304 SKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQK-ILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +++++    .+++++ ++.++.++        ......... +..|...|.+++|+  +..+.++++.|+.+.+|-+
T Consensus       400 ~~~~~----~l~~~~-dg~i~iwd--------~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          400 YVSDN----ILVSGS-ENQFNIYN--------LRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EECSS----EEEEEE-TTEEEEEE--------TTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred             EeCCC----EEEEec-CCeEEEEE--------CCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence            45555    666666 66555543        122222222 45688889999997  4444266676776665543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-33  Score=309.13  Aligned_cols=339  Identities=10%  Similarity=0.028  Sum_probs=238.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+| |++|++++.|++|+|||+.+++++..+. +...+                  ++++|.+.      
T Consensus        58 ~~~V--~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V------------------~~v~~sp~------  109 (902)
T 2oaj_A           58 RSAI--KEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKI------------------TSIDTDAS------  109 (902)
T ss_dssp             CCCE--EEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCE------------------EEEECCTT------
T ss_pred             CCCE--EEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCE------------------EEEEECCC------
Confidence            3578  5559999 8899999999999999999999888775 33333                  44444432      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEE----------EecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCce
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKW----------RLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~----------~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~  151 (579)
                         +.++++|+.||.|++||+.+++...          ....+|.++|++++|+|+ +..+++|+.||.| +||+++++.
T Consensus       110 ---g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~  185 (902)
T 2oaj_A          110 ---LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI  185 (902)
T ss_dssp             ---CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE
T ss_pred             ---CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce
Confidence               7889999999999999999987631          123679999999999996 4689999999999 999999998


Q ss_pred             eeEeecC------------------CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE--e---ec---------
Q 008058          152 LGKFRAS------------------TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK--F---SG---------  197 (579)
Q Consensus       152 ~~~~~~~------------------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~--~---~~---------  197 (579)
                      ++.+..|                  ...|++++|+|+|++|++++  |.|++||+++++++..  +   .+         
T Consensus       186 ~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~  265 (902)
T 2oaj_A          186 KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIR  265 (902)
T ss_dssp             EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCC
T ss_pred             EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCC
Confidence            8888765                  46799999999999999998  8999999999887653  2   12         


Q ss_pred             ----CCCCEEEEEEec----CC-CEEEEEecCC-----CeEEEEEcCC------------------Cccc----------
Q 008058          198 ----HPGAVRFMTFSD----NG-KYVLSSAVGE-----RYIALWRTDG------------------VKKQ----------  235 (579)
Q Consensus       198 ----h~~~v~~l~~~~----~~-~~l~s~s~~d-----~~i~vwd~~~------------------~~~~----------  235 (579)
                          |..+|.+++|++    ++ ..+++++ .|     +.+.+|++..                  .+..          
T Consensus       266 ~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  344 (902)
T 2oaj_A          266 DSSTNAAKISKVYWMCENNPEYTSLLISHK-SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP  344 (902)
T ss_dssp             CCSSCCCEEEEEEEEECSSTTEEEEEEEEE-CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred             CCccccCCeeEEEEEecCCCCCCEEEEeCC-CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence                345799999964    43 3455554 34     2677777310                  0000          


Q ss_pred             -----------------------------cceeEEee----------------ecCceeeEeEEec--------------
Q 008058          236 -----------------------------SASCVLAM----------------EHPAVFMDCRCID--------------  256 (579)
Q Consensus       236 -----------------------------~~~~~~~~----------------~~~~~~~~~~~~~--------------  256 (579)
                                                   ....++.+                ..+...+.++.++              
T Consensus       345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~  424 (902)
T 2oaj_A          345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA  424 (902)
T ss_dssp             EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence                                         00000000                0000111222221              


Q ss_pred             ---------------CCcccCCCcEEEEEEcCCeEEEEECCCceeecc--c---------CCceEEeeecccCccccccc
Q 008058          257 ---------------NGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--T---------KATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       257 ---------------~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~~~  310 (579)
                                     ...++|++++|++|+.||+|++||+.++.....  .         ..+...+.+.. |+|+++  
T Consensus       425 ~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva-fspdg~--  501 (902)
T 2oaj_A          425 QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS-FAAETL--  501 (902)
T ss_dssp             BCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE-EETTTT--
T ss_pred             cCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE-ecCCCC--
Confidence                           012348899999999999999999988742110  0         01222233333 788888  


Q ss_pred             chhhhhccccceecCCceEEEEEeCC-------C---------C---------------------CceeEEEecCCCCcE
Q 008058          311 TAAIFAAKLQDIVKPASVHTFVAYGL-------L---------L---------------------KPSFQKILVNSGEDI  353 (579)
Q Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~g~-------~---------~---------------------~~~~~~~~~h~~~v~  353 (579)
                        .+++|+.|+.+++|+..-...++.       .         +                     ..+...+.+|.+.|+
T Consensus       502 --~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~  579 (902)
T 2oaj_A          502 --ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTS  579 (902)
T ss_dssp             --EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEE
T ss_pred             --eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEE
Confidence              899999999888776432100000       0         0                     123567778999999


Q ss_pred             EEeecCCcceeeccccceecccceeeee
Q 008058          354 NLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       354 ~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      +++||||| +| ++|+.|+++++|++..
T Consensus       580 svafSpdG-~l-Asgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          580 AINNSNIG-FV-GIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             EEEECBTS-EE-EEEETTSEEEEEETTT
T ss_pred             EEEecCCc-EE-EEEeCCCcEEEEECCC
Confidence            99999999 99 9999999999999853

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=290.99  Aligned_cols=314  Identities=13%  Similarity=0.138  Sum_probs=223.6

Q ss_pred             CCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCC---CeE---EEEeccccccccccccccccccccccCccceEEeee
Q 008058            3 SSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLK---GQV---QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         3 ~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      +++|  .+++|+| +|++||+|+.||+|+|||+.+   +..   ...+ .|                  ...+.+++|.+
T Consensus        63 ~~~V--~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h------------------~~~v~~~~~~~  121 (437)
T 3gre_A           63 PNSI--TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DC------------------SSTVTQITMIP  121 (437)
T ss_dssp             TSCE--EEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-EC------------------SSCEEEEEECT
T ss_pred             CCce--EEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cC------------------CCCEEEEEEeC
Confidence            5788  5569999 999999999999999999876   321   1111 12                  33566777765


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEcc---CCeEEEEe--------c-CC--CCCCEEEEE--EccCCCEEEEEeCCC
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVS---AGQLKWRL--------S-DC--HPGGVSAIS--FATHGSCIYSAGADG  139 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~---~~~~~~~~--------~-~~--h~~~V~~l~--~~~~~~~l~s~~~dg  139 (579)
                      .         +..|++|+.||.|++||+.   +++.....        . ..  +...+.++.  +++++.++++++.||
T Consensus       122 ~---------~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  192 (437)
T 3gre_A          122 N---------FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS  192 (437)
T ss_dssp             T---------SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred             C---------CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence            3         7889999999999999995   44333211        1 11  556777777  568899999999999


Q ss_pred             cEEEEeCCCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEe----cC
Q 008058          140 MVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFS----DN  210 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~----~~  210 (579)
                      .|++||+++++.+..+..  |...|++++|+|++++|++|+  |.|++||+++++++.++. +|..+|.+++|+    |+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~  272 (437)
T 3gre_A          193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN  272 (437)
T ss_dssp             EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred             eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence            999999999999999988  788999999999999999998  899999999999999886 788899999665    46


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeEEeeec--------------------------CceeeEeEEecCCcccCCC
Q 008058          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH--------------------------PAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~  264 (579)
                      +.++++++ .|+.|++||+++++..     ..+..                          +...+.+++|+      ++
T Consensus       273 ~~~l~s~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~------~~  340 (437)
T 3gre_A          273 SVIVVGGS-SKTFLTIWNFVKGHCQ-----YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS------ND  340 (437)
T ss_dssp             EEEEEEES-TTEEEEEEETTTTEEE-----EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE------TT
T ss_pred             ccEEEEEc-CCCcEEEEEcCCCcEE-----EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC------Cc
Confidence            77888887 7999999999987633     11111                          33345556664      56


Q ss_pred             cEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEe-CCCCCceeE
Q 008058          265 LYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAY-GLLLKPSFQ  343 (579)
Q Consensus       265 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~  343 (579)
                      .+|++++.||.|++||+.+++.+............   +.+.           ..     .......... .........
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~  401 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDV---FIPT-----------QV-----TANLTMLLRKMKRTSTHSVD  401 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCE---EEEE-----------EE-----ETTEEEEEEECC--------
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCce---EEEE-----------Ee-----ecceEEEEEecccccccccC
Confidence            89999999999999999998876554432110000   0000           00     0011111111 011111123


Q ss_pred             EEecCCCCcEEEeecCC--cceeeccccceeccccee
Q 008058          344 KILVNSGEDINLNCSQD--GVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       344 ~~~~h~~~v~~~~~s~d--g~~l~~s~s~d~~~~~w~  378 (579)
                      ....|...|.+++|+++  +.+| +|++.|+.|++|+
T Consensus       402 ~~~~h~~~I~~i~~~~~~~~~~l-~s~~~dG~I~iw~  437 (437)
T 3gre_A          402 DSLYHHDIINSISTCEVDETPLL-VACDNSGLIGIFQ  437 (437)
T ss_dssp             -----CCCEEEEEEEESSSSEEE-EEEETTSCEEEEC
T ss_pred             cccccccceeeEeeeccCCceEE-EEEcCCceEEEeC
Confidence            44569999999999998  7788 9999999999995

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-32  Score=272.97  Aligned_cols=236  Identities=14%  Similarity=0.194  Sum_probs=199.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe------EEEEeccccccccccccccccccccccCccceEEeeecc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      ..|  .+++|+|+|.+||+|+.|+.+++|++....      ....+..|..                  .+.++.|.+. 
T Consensus       107 ~~v--~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~-  165 (354)
T 2pbi_B          107 TWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTN------------------YLSACSFTNS-  165 (354)
T ss_dssp             SCC--CEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSS------------------CEEEEEECSS-
T ss_pred             CCE--EEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCC------------------cEEEEEEeCC-
Confidence            456  566999999999999999999999986432      1222222322                  3445666553 


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                              +..+++++.||.|++||+.+++.+..+ .+|...|.+++|+|  +|++|++|+.||+|++||+++++++..+
T Consensus       166 --------~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          166 --------DMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             --------SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --------CCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence                    678999999999999999999988666 57999999999988  5789999999999999999999999999


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .+|...|++++|+|++++|++|+  +.|++||+++++.+..+..+  ...+.+++|+|+++++++++ .|+.|++||+.+
T Consensus       237 ~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~-~d~~i~vwd~~~  315 (354)
T 2pbi_B          237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-NDYTINVWDVLK  315 (354)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTSCEEEEETTT
T ss_pred             cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEE-CCCcEEEEECCC
Confidence            99999999999999999999998  89999999999887777543  35789999999999999988 799999999988


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ++.     +..+..+...+.++.|+     |+|.+|++|+.||+|++|+
T Consensus       316 ~~~-----~~~l~~h~~~v~~l~~s-----pdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          316 GSR-----VSILFGHENRVSTLRVS-----PDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSE-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSEEEEEC
T ss_pred             Cce-----EEEEECCCCcEEEEEEC-----CCCCEEEEEcCCCCEEecC
Confidence            763     34455666778888898     9999999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.6e-33  Score=289.84  Aligned_cols=281  Identities=14%  Similarity=0.083  Sum_probs=206.4

Q ss_pred             CcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            4 SNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         4 ~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..|  .|++|+| ++++||+|+.||+|+|||+.++....  .+.+|..                  .+++++|.|.+   
T Consensus       120 ~~V--~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~------------------~V~~l~f~p~~---  176 (435)
T 4e54_B          120 RRA--TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG------------------SITGLKFNPLN---  176 (435)
T ss_dssp             SCE--EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSC------------------CCCEEEECSSC---
T ss_pred             CCE--EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCC------------------CEEEEEEeCCC---
Confidence            347  5669999 56799999999999999998775433  3334443                  45566666543   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                           +.+|++|+.||.|++||+.++...... ...+...+.+++|+|++++|++|+.||.|++||++ ++.+..+.+|.
T Consensus       177 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~  250 (435)
T 4e54_B          177 -----TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHK  250 (435)
T ss_dssp             -----TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCS
T ss_pred             -----CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEeccc
Confidence                 778999999999999999877653222 12344567899999999999999999999999985 56778889999


Q ss_pred             CCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE---eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          160 KGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK---FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ..|++++|+|+++ ++++|+  +.|++||+++.+....   ..+|..+|++++|+|+|++|++++ .|+.|++||+.++.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence            9999999999987 666776  8999999988765433   367999999999999999999998 79999999999876


Q ss_pred             cccceeEEeeecC------ceeeEeEEecCCcccCCCcEEEEEEc------------CCeEEEEECCCceeecccCCceE
Q 008058          234 KQSASCVLAMEHP------AVFMDCRCIDNGGVDDAGLYVLAISE------------TGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       234 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      ...    ....+.      ...+. ..+.     |++..++++..            ++.|++||..+++.+...     
T Consensus       330 ~~~----~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-----  394 (435)
T 4e54_B          330 CPL----GLIPHPHRHFQHLTPIK-AAWH-----PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-----  394 (435)
T ss_dssp             SEE----EECCCCCCCCSSSCCCB-CEEC-----SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-----
T ss_pred             cce----EEecccccccccceeEE-EEEc-----CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-----
Confidence            431    111111      11111 2233     55555555532            345666666555432211     


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeeccccceecc
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~~~  374 (579)
                                                                       ..+|...|.++ +|+|||.+| ++|+ |++|
T Consensus       395 -------------------------------------------------~~~~~~~v~s~~~fspdg~~l-asg~-d~~i  423 (435)
T 4e54_B          395 -------------------------------------------------YDPESSGISSLNEFNPMGDTL-ASAM-GYHI  423 (435)
T ss_dssp             -------------------------------------------------CCSSCCCCCCEEEECTTSSCE-EEEC-SSEE
T ss_pred             -------------------------------------------------eCCCCCcEEEEEEECCCCCEE-EEEc-CCcE
Confidence                                                             11455567776 699999999 8887 8899


Q ss_pred             cceeee
Q 008058          375 RGRYVQ  380 (579)
Q Consensus       375 ~~w~~~  380 (579)
                      ++|++.
T Consensus       424 ~iW~~~  429 (435)
T 4e54_B          424 LIWSQQ  429 (435)
T ss_dssp             EECCCC
T ss_pred             EEEECC
Confidence            999984

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-32  Score=265.21  Aligned_cols=272  Identities=19%  Similarity=0.219  Sum_probs=224.6

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++| |++++|++|+.||.|++||+.++.....+..|...+..                  +.|.+.     
T Consensus        17 h~~~v--~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~------------------~~~~~~-----   70 (313)
T 3odt_A           17 HDQDV--RDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNS------------------VCYDSE-----   70 (313)
T ss_dssp             CSSCE--EEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEE------------------EEEETT-----
T ss_pred             CCCCc--EEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEE------------------EEECCC-----
Confidence            45778  55599 99999999999999999999999888888766555544                  444442     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++++.+|.|++|++...   +....+ .+|...|.++.|  +++++++++.||.|++||  .++....+..|
T Consensus        71 ----~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~  141 (313)
T 3odt_A           71 ----KELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH  141 (313)
T ss_dssp             ----TTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred             ----CCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence                788999999999999998764   334344 679999999999  677999999999999999  67888889999


Q ss_pred             CCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          159 TKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ...+.+++|+| +++++++++  |.|++||  ..+....+.. |...+.+++|+|++. +++++ .|+.|++||+++++.
T Consensus       142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~-~dg~i~i~d~~~~~~  217 (313)
T 3odt_A          142 NASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS-NDGLIKLVDMHTGDV  217 (313)
T ss_dssp             SSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEE-TTSEEEEEETTTCCE
T ss_pred             CCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEcc-CCCeEEEEECCchhh
Confidence            99999999998 899999888  8999999  5567777777 999999999999998 77777 799999999998763


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                           +..+..+...+..+.|+     |++ .|++++.||.|++||+.+++.+.                          
T Consensus       218 -----~~~~~~~~~~i~~~~~~-----~~~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------  260 (313)
T 3odt_A          218 -----LRTYEGHESFVYCIKLL-----PNG-DIVSCGEDRTVRIWSKENGSLKQ--------------------------  260 (313)
T ss_dssp             -----EEEEECCSSCEEEEEEC-----TTS-CEEEEETTSEEEEECTTTCCEEE--------------------------
T ss_pred             -----hhhhhcCCceEEEEEEe-----cCC-CEEEEecCCEEEEEECCCCceeE--------------------------
Confidence                 34555566677888887     888 58999999999999987654321                          


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   .+..|...+.+++|+|||.+  ++++.|+.+++|++.
T Consensus       261 -----------------------------~~~~~~~~i~~~~~~~~~~~--~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          261 -----------------------------VITLPAISIWSVDCMSNGDI--IVGSSDNLVRIFSQE  295 (313)
T ss_dssp             -----------------------------EEECSSSCEEEEEECTTSCE--EEEETTSCEEEEESC
T ss_pred             -----------------------------EEeccCceEEEEEEccCCCE--EEEeCCCcEEEEeCC
Confidence                                         23356668999999999995  457889999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=278.73  Aligned_cols=300  Identities=12%  Similarity=0.066  Sum_probs=228.0

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| +|++|++|+.||.|++||+.++.....+.......  .....  ..+| ...+.++.|.+.+   
T Consensus        42 h~~~v--~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~--~~~~-~~~v~~~~~~~~~---  111 (408)
T 4a11_B           42 HGGGI--NTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS--IGRDH--PDVH-RYSVETVQWYPHD---  111 (408)
T ss_dssp             CSSCE--EEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE--ECTTC--TTCC-SSCEEEEEECTTC---
T ss_pred             cCCcE--EEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc--ccccc--cccC-CCcEEEEEEccCC---
Confidence            45788  5669999 99999999999999999998876443322100000  00000  0112 3456778887743   


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                           +.++++++.+|.|++||+.+++....+.  +...+.++.|+|.   +.++++++.||.|++||+.+++.+..+..
T Consensus       112 -----~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          112 -----TGMFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             -----TTCEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             -----CcEEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence                 6789999999999999999999876663  7788999999984   44999999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCe-eeEEe---------------ecCCCCEEEEEEecCCCEEEEEe
Q 008058          158 STKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHK-KMQKF---------------SGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~-~~~~~---------------~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      |...|.+++|+|+++ ++++++  |.|++||++++. .+..+               .+|...|.+++|+|++++|++++
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence            999999999999998 477776  899999998765 44444               57889999999999999999998


Q ss_pred             cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEee
Q 008058          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSS  298 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  298 (579)
                       .|+.|++||+.+++.......................     ..+..+++++.||.|++||+.+++.+.          
T Consensus       265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~~~~----------  328 (408)
T 4a11_B          265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-----GCSSEFVFVPYGSTIAVYTVYSGEQIT----------  328 (408)
T ss_dssp             -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-----SSSSCEEEEEETTEEEEEETTTCCEEE----------
T ss_pred             -CCCeEEEEECCCCccceeccccccccccccceeEEec-----CCCceEEEEecCCEEEEEECcCCccee----------
Confidence             7999999999987643110000111111122222222     445677788889999999987654321          


Q ss_pred             ecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          299 SEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                                   .+.+|...|.+++|+|||.+| ++++.|+.+++|+
T Consensus       329 ---------------------------------------------~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~  362 (408)
T 4a11_B          329 ---------------------------------------------MLKGHYKTVDCCVFQSNFQEL-YSGSRDCNILAWV  362 (408)
T ss_dssp             ---------------------------------------------EECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEE
T ss_pred             ---------------------------------------------eeccCCCeEEEEEEcCCCCEE-EEECCCCeEEEEe
Confidence                                                         334677889999999999999 9999999999999


Q ss_pred             ee
Q 008058          379 VQ  380 (579)
Q Consensus       379 ~~  380 (579)
                      +.
T Consensus       363 ~~  364 (408)
T 4a11_B          363 PS  364 (408)
T ss_dssp             EC
T ss_pred             CC
Confidence            85

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=271.48  Aligned_cols=252  Identities=15%  Similarity=0.191  Sum_probs=198.6

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..+|  .+++|+|+|++||+|+.|++|+||+..++.  +...+.+|...+..+.|+++                      
T Consensus        61 ~~~v--~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~----------------------  116 (345)
T 3fm0_A           61 QRTV--RKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS----------------------  116 (345)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT----------------------
T ss_pred             CCcE--EEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC----------------------
Confidence            4568  555999999999999999999999988764  56677766665555555544                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~  156 (579)
                           +.+|++|+.|+.|++||+.++..  ......+|...|.+++|+|++++|++++.|++|++||..+++  +..++.
T Consensus       117 -----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~  191 (345)
T 3fm0_A          117 -----GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE  191 (345)
T ss_dssp             -----SSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             -----CCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence                 78999999999999999987642  223446899999999999999999999999999999998775  456788


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC---------------eeeEEeec-CCCCEEEEEEecCCCEEEEEe
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH---------------KKMQKFSG-HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~---------------~~~~~~~~-h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      +|...|.+++|+|+|++|++++  +.|++||....               +++.++.+ |...|.+++|+|++..|++++
T Consensus       192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  271 (345)
T 3fm0_A          192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC  271 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence            9999999999999999999998  89999996321               33455555 889999999999999999988


Q ss_pred             cCCCeEEEEEcCCCccccc-ee---EEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceeecc
Q 008058          219 VGERYIALWRTDGVKKQSA-SC---VLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                       .|+.|++|+......... ..   ......+...+.++.|+     |++ .+|++++.||+|++|+..+.+.+..
T Consensus       272 -~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~-----p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          272 -GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN-----PKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             -TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC-----SSSTTEEEEEETTSCEEEEEECC------
T ss_pred             -CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe-----CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence             799999999876542210 01   11123455677888888     877 5999999999999999988876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-32  Score=295.03  Aligned_cols=310  Identities=13%  Similarity=0.139  Sum_probs=252.6

Q ss_pred             CCc-ccceEEEEcc--CCCEEEEEeCCCcEEEEECCCC--------eEEEEeccccccccccccccccccccccCccceE
Q 008058            3 SSN-IRDILTSFSP--ALDYFAICSGDARIKIWDTLKG--------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~-V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++ |  .+++|+|  +|++||+|+.||+|+|||+.++        .....+..|...+..+.|+++             
T Consensus        63 ~~~~v--~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------  127 (615)
T 1pgu_A           63 GSSVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-------------  127 (615)
T ss_dssp             TTSCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-------------
T ss_pred             CCceE--EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC-------------
Confidence            455 7  5669999  9999999999999999999755        566666655555554444444             


Q ss_pred             EeeecccccccccCCcEEEEEECC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeC
Q 008058           72 KWLSVDRKKKRKLGSSLLVLGTGG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDP  146 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~  146 (579)
                                    +.++++++.+    +.|++||  .++.+..+ .+|...|++++|+|+++ .+++++.|+.|++||+
T Consensus       128 --------------~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          128 --------------GRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             --------------SSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred             --------------CCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence                          7889999887    6788888  55666555 68999999999999998 7999999999999999


Q ss_pred             CCCceeeEeecCCC---CeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe-e---cCCCCEEEEEEecCCCEEEE
Q 008058          147 LTGSLLGKFRASTK---GISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF-S---GHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       147 ~~~~~~~~~~~~~~---~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~-~---~h~~~v~~l~~~~~~~~l~s  216 (579)
                      .+++.+..+.+|..   .|.+++|+|+ ++++++++  |.|++||+++++.+..+ .   +|...|.++.|+ +++++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~  269 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT  269 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred             CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence            99999999999999   9999999999 99999887  89999999999999998 6   899999999999 9999999


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecC----ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHP----AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ++ .|+.|++||+++++..     ..+..+    ...+..+.+      +++.++++++.||.|++||+.+++.+.....
T Consensus       270 ~~-~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  337 (615)
T 1pgu_A          270 VG-ADATIRVWDVTTSKCV-----QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYELGHDEVLKTISG  337 (615)
T ss_dssp             EE-TTSEEEEEETTTTEEE-----EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred             Ec-CCCcEEEEECCCCcEE-----EEEcCCCCcccCceeEEEe------CCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence            98 7999999999987633     333332    233444555      4789999999999999999999888776665


Q ss_pred             ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                      +...+.+.. + ++       +++++.++.++.++..           .++  .+|...|.+++| +++..+ ++++.|+
T Consensus       338 ~~~~v~~~~-~-~~-------l~~~~~dg~i~~w~~~-----------~~~--~~~~~~v~~~~~-~~~~~l-~~~~~d~  393 (615)
T 1pgu_A          338 HNKGITALT-V-NP-------LISGSYDGRIMEWSSS-----------SMH--QDHSNLIVSLDN-SKAQEY-SSISWDD  393 (615)
T ss_dssp             CSSCEEEEE-T-TT-------TEEEETTSCEEETTTT-----------EEE--CCCCSCEEEEEC-CSTTCC-EEEETTT
T ss_pred             CCCCEEEEE-e-cC-------cEEECCCCeEEEEEch-----------hhc--CcccCceEEEEE-CCCcEE-EEEeCCC
Confidence            554444443 2 22       8888888888877643           233  689999999999 667788 8999999


Q ss_pred             cccceeeee
Q 008058          373 SKRGRYVQN  381 (579)
Q Consensus       373 ~~~~w~~~~  381 (579)
                      .+++|++..
T Consensus       394 ~i~~~~~~~  402 (615)
T 1pgu_A          394 TLKVNGITK  402 (615)
T ss_dssp             EEEETTEEE
T ss_pred             CEEEEEccc
Confidence            999999853

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.5e-33  Score=278.73  Aligned_cols=244  Identities=16%  Similarity=0.227  Sum_probs=199.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe-------EEEEeccccccccccccccccccccccCccceEEeee
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ-------VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ...|  .+++|+|+|++||+|+.|+.++|||+.+..       ....+.+|...+.                  ++.|.+
T Consensus       108 ~~~v--~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~------------------~~~~~~  167 (380)
T 3iz6_a          108 CPWV--MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYAS------------------SCQYVP  167 (380)
T ss_dssp             CTTC--CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC------------------CCBCCS
T ss_pred             CCCE--EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceE------------------EEEEec
Confidence            4567  455999999999999999999999987542       1122333333333                  344444


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCC-CC
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPL-TG  149 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~-~~  149 (579)
                      .+        +..+++|+.|+.|++||+.+++.+..+    ..+|...|.++.|+| ++++|++|+.|++|++||++ .+
T Consensus       168 ~~--------~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~  239 (380)
T 3iz6_a          168 DQ--------ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS  239 (380)
T ss_dssp             SS--------SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC
T ss_pred             CC--------CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC
Confidence            32        556999999999999999999887554    257999999999987 88999999999999999998 55


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCC-------CEEEEEEecCCCEEEEEecC
Q 008058          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPG-------AVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~l~s~s~~  220 (579)
                      +.+..+.+|...|++++|+|+|++|++|+  |+|++||+++++.+..+..+..       .|++++|+|+|+++++++ .
T Consensus       240 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~  318 (380)
T 3iz6_a          240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-S  318 (380)
T ss_dssp             CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-T
T ss_pred             cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-C
Confidence            78888999999999999999999999998  8999999999999888765432       489999999999999987 6


Q ss_pred             CCeEEEEEcCCCccccceeEEee----ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          221 ERYIALWRTDGVKKQSASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ||.|++||+..++..     ..+    ..+...+.++.|+     |+|.+|++|+.||+|++|++...+
T Consensus       319 dg~i~vwd~~~~~~~-----~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          319 NGDCYVWDTLLAEMV-----LNLGTLQNSHEGRISCLGLS-----SDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             TSCEEEEETTTCCEE-----EEECCSCSSCCCCCCEEEEC-----SSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEECCCCceE-----EEEecccCCCCCceEEEEEC-----CCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999999877633     222    3456677888888     999999999999999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-32  Score=270.42  Aligned_cols=242  Identities=10%  Similarity=0.098  Sum_probs=186.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCC-------CeEEEEeccccccccccccccccccccccCccceEEee
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLK-------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL   74 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~   74 (579)
                      +..+|  .+++|+|+|++||+|+.|++|+|||...       .++...+.+|...+..+.|+++                
T Consensus        57 h~~~v--~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~----------------  118 (330)
T 2hes_X           57 HKKAI--RSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----------------  118 (330)
T ss_dssp             CCSCE--EEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT----------------
T ss_pred             ccCCE--EEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC----------------
Confidence            34678  5559999999999999999999999853       3455666666555554444444                


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCC----eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-
Q 008058           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG----QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-  149 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-  149 (579)
                                 +.+|++|+.|+.|++||+...    +++.. ..+|...|.+++|+|++++|++++.|++|++||..++ 
T Consensus       119 -----------g~~las~s~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~  186 (330)
T 2hes_X          119 -----------GYYLATCSRDKSVWIWETDESGEEYECISV-LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD  186 (330)
T ss_dssp             -----------SCEEEEEETTSCEEEEECCTTCCCCEEEEE-ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred             -----------CCEEEEEeCCCEEEEEeccCCCCCeEEEEE-eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence                       789999999999999999532    34433 4689999999999999999999999999999998776 


Q ss_pred             -ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--------eeeEEeec-CCCCEEEEEEecCCCEEE
Q 008058          150 -SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--------KKMQKFSG-HPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       150 -~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~--------~~~~~~~~-h~~~v~~l~~~~~~~~l~  215 (579)
                       +++..+.+|...|.+++|+|+  +.++++|+  ++|++||++++        .....+.+ |...|.+++|++++ +|+
T Consensus       187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~  265 (330)
T 2hes_X          187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA  265 (330)
T ss_dssp             EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred             eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence             678889999999999999998  67888887  89999998754        34555555 99999999999776 778


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEe--eecCceeeEeEEecCCcccC--CCcEEEEEEcCCeEEEEECCC
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLA--MEHPAVFMDCRCIDNGGVDD--AGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      +++ .|+.|++|+...++..   ....  ..|....+.++.|+     |  ++.+|++|+.||+|++||++.
T Consensus       266 s~~-~dg~v~iw~~~~~~~~---~~~~~~~~h~~~~v~~v~~~-----~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          266 SVG-ADGVLAVYEEVDGEWK---VFAKRALCHGVYEINVVKWL-----ELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEE-TTSCEEEEEEETTEEE---EEEEESCTTTTSCEEEEEEC----------CCEEEEETTSEEEEEEC--
T ss_pred             EEe-CCCEEEEEEcCCCceE---EEeccccccccceEEEEEEe-----cCCCceEEEEecCCCcEEEEEecc
Confidence            887 7999999998766321   1112  23443367778887     6  689999999999999999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.9e-32  Score=268.23  Aligned_cols=281  Identities=13%  Similarity=0.189  Sum_probs=221.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++|++++ ||.|++||+.++.....+...             ........+.++.|.+.     
T Consensus        50 h~~~v--~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~-----  108 (337)
T 1gxr_A           50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-------------DCLNRDNYIRSCKLLPD-----  108 (337)
T ss_dssp             CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-------------ECSCTTSBEEEEEECTT-----
T ss_pred             CCCce--EEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc-------------cccCCCCcEEEEEEcCC-----
Confidence            35678  5559999999999999 999999999876532211100             00011234556666653     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                          +.++++++.+|.|++||+.+++  .... ..+|...|.+++|+|+++++++++.||.|++||+.+++.+..+..|.
T Consensus       109 ----~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~  183 (337)
T 1gxr_A          109 ----GCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             ----SSEEEEEESSSEEEEEECCCC--EEEEE-EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             ----CCEEEEEcCCCcEEEEECCCCCcceeee-cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc
Confidence                7789999999999999999887  3333 35789999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ..+.+++|+|+++++++++  |.|++||+++++.+..+. |...+.+++|+|+++++++++ .|+.|++||++..+..  
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~--  259 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKY--  259 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEE--
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeE--
Confidence            9999999999999999987  899999999999888775 788999999999999999987 7999999999887532  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                          ....+...+..+.|+     |++++|++++.||.|++||+.+++.+....... .+.+. .++++++    .++++
T Consensus       260 ----~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~v~~~-~~s~~~~----~l~~~  324 (337)
T 1gxr_A          260 ----QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSC-DISVDDK----YIVTG  324 (337)
T ss_dssp             ----EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-CEEEE-EECTTSC----EEEEE
T ss_pred             ----EEcCCccceeEEEEC-----CCCCEEEEecCCCcEEEEECCCCeEEEEecCCC-cEEEE-EECCCCC----EEEEe
Confidence                344455567778887     999999999999999999999987764322111 11111 1466666    78888


Q ss_pred             cccceecCCc
Q 008058          318 KLQDIVKPAS  327 (579)
Q Consensus       318 ~~~~~~~~~~  327 (579)
                      +.++.++.++
T Consensus       325 ~~dg~i~iw~  334 (337)
T 1gxr_A          325 SGDKKATVYE  334 (337)
T ss_dssp             ETTSCEEEEE
T ss_pred             cCCCeEEEEE
Confidence            8877665543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.4e-32  Score=268.73  Aligned_cols=241  Identities=14%  Similarity=0.158  Sum_probs=196.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|++.++++|+.|++|++||+.++++...+.+|...+..+.|+++                        
T Consensus        76 ~~~V--~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~------------------------  129 (343)
T 2xzm_R           76 NHFV--SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD------------------------  129 (343)
T ss_dssp             SSCE--EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS------------------------
T ss_pred             CCce--EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC------------------------
Confidence            4567  55699999999999999999999999999999999887776666666555                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCc
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG----------SCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~----------~~l~s~~~dg~v~iwd~~~~~  150 (579)
                         +..+++++.|+.|++||+...... ..  ..+|...|.+++|+|++          .+|++++.||+|++|| ..++
T Consensus       130 ---~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~  204 (343)
T 2xzm_R          130 ---NRQILSAGAEREIKLWNILGECKF-SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQ  204 (343)
T ss_dssp             ---TTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTE
T ss_pred             ---CCEEEEEcCCCEEEEEeccCCcee-eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCc
Confidence               788999999999999999854332 22  23788999999999987          7899999999999999 4677


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      ....+.+|...|.+++|+|+|++|++|+  |.|++||+.+ ......+ .+...|.+++|+|++++++++  .|+.|++|
T Consensus       205 ~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~--~d~~v~iw  281 (343)
T 2xzm_R          205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG--TDQGVKIF  281 (343)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE--ESSCEEEE
T ss_pred             eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE--CCCCEEEE
Confidence            7788999999999999999999999998  8999999954 4444444 356679999999999877654  37889999


Q ss_pred             EcCCCccccceeEEeee-----------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          228 RTDGVKKQSASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ++.+.+..   .+..+.           .+...+..++|+     |+|.+|++|+.||.|++|+++++.
T Consensus       282 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          282 NLMTQSKA---PVCTIEAEPITKAEGQKGKNPQCTSLAWN-----ALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             ESSSCCSC---SEEECCCCSGGGBTTBCCSCCCEEEEEEC-----SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EeCCCCCC---ceEEeecCcchhhhhhcCCCCceEEEEEC-----CCCCeEEEecCCceEEEEEEEccC
Confidence            99876543   111111           234456778887     999999999999999999987654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-32  Score=275.26  Aligned_cols=243  Identities=12%  Similarity=0.104  Sum_probs=187.7

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      +.|  .+++|+|++. +++++.||+|+|||+.+++........             ..+| ...+.+++|.+.       
T Consensus        95 ~~V--~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~-------------~~~h-~~~V~~v~~spd-------  150 (357)
T 4g56_B           95 AGV--TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFA-------------KYEH-DDIVKTLSVFSD-------  150 (357)
T ss_dssp             SCE--EEEEEETTTE-EEEEETTSCEEEC--------CCCCEE-------------ECCC-SSCEEEEEECSS-------
T ss_pred             CCE--EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeec-------------cCCC-CCCEEEEEECCC-------
Confidence            457  5669999986 556788999999999888754322100             0022 224456666553       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEee--cCCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKFR--ASTK  160 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~  160 (579)
                        +.+|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++. ++++++.||+|++||+++++....+.  .+..
T Consensus       151 --g~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~  227 (357)
T 4g56_B          151 --GTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT  227 (357)
T ss_dssp             --SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCS
T ss_pred             --CCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccc
Confidence              788999999999999999999988776 67999999999999875 68999999999999999988776544  4566


Q ss_pred             CeeEEEEccCC-CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC-EEEEEecCCCeEEEEEcCCCcccc
Q 008058          161 GISCMAVSSDG-KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       161 ~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      .+.+++|+|++ .++++|+  +.|++||+++++.+.++.+|...|++++|+|++. +|++++ .|++|++||+++++.  
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~--  304 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEV--  304 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEE--
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcE--
Confidence            89999999974 6777776  8999999999999999999999999999999874 677776 799999999988753  


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCce
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                         ...+.| ...+..++|+     | ++.+|++++.||+|++|++.+..
T Consensus       305 ---~~~~~H-~~~V~~vafs-----P~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          305 ---FRDLSH-RDFVTGVAWS-----PLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             ---EEECCC-SSCEEEEEEC-----SSSTTEEEEEETTSCEEEEECC---
T ss_pred             ---eEECCC-CCCEEEEEEe-----CCCCCEEEEEcCCCeEEEEECCCCC
Confidence               234444 4556778887     7 78999999999999999986543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.2e-33  Score=272.64  Aligned_cols=246  Identities=15%  Similarity=0.165  Sum_probs=194.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +..+|  .+++|+|+|++||+|+.|++|+|||+.++.  ++..+.+|...+.                  +++|.++.  
T Consensus        12 H~~~V--~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~------------------~v~~~~~~--   69 (316)
T 3bg1_A           12 HEDMI--HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW------------------QVAWAHPM--   69 (316)
T ss_dssp             --CCE--EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE------------------EEEECCGG--
T ss_pred             ccCeE--EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE------------------EEEeCCCC--
Confidence            35678  555999999999999999999999998775  4566766665554                  44453321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCce---e
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGSL---L  152 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~---~  152 (579)
                           ++.+|++|+.|+.|++||+.+++  .... ..+|...|++++|+|+  +.+|++|+.|++|++||+..+..   .
T Consensus        70 -----~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~  143 (316)
T 3bg1_A           70 -----YGNILASCSYDRKVIIWREENGTWEKSHE-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK  143 (316)
T ss_dssp             -----GSSCEEEEETTSCEEEECCSSSCCCEEEE-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC
T ss_pred             -----CCCEEEEEECCCEEEEEECCCCcceEEEE-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee
Confidence                 06789999999999999999874  3333 3689999999999998  78999999999999999987632   3


Q ss_pred             eEeecCCCCeeEEEEccC-----------------CCEEEEEC--CeEEEEECCCC---eeeEEeecCCCCEEEEEEecC
Q 008058          153 GKFRASTKGISCMAVSSD-----------------GKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGAVRFMTFSDN  210 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~-----------------g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~  210 (579)
                      ..+.+|...|.+++|+|+                 +++|++|+  +.|++||++..   +.+..+.+|...|.+++|+|+
T Consensus       144 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred             eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence            456778889999999997                 46888887  89999999765   467788999999999999998


Q ss_pred             C----CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          211 G----KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       211 ~----~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      +    .+|++++ .|++|++|++........ ....+..+...+..+.|+     |++.+|++++.||+|++|+..
T Consensus       224 ~~~~~~~las~s-~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~v~~v~~s-----p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          224 IGLPTSTIASCS-QDGRVFIWTCDDASSNTW-SPKLLHKFNDVVWHVSWS-----ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             SSCSCCEEEEEE-TTCEEEEEECSSTTCCCC-BCCEEEECSSCEEEEEEC-----TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCCceEEEEc-CCCeEEEEEccCccccch-hhhhhhcCCCcEEEEEEc-----CCCCEEEEEcCCCeEEEEEEC
Confidence            6    7888887 799999999986321100 011122334566778887     999999999999999999965

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.5e-31  Score=261.10  Aligned_cols=273  Identities=15%  Similarity=0.238  Sum_probs=217.0

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++||+++ +||+|. |++|+|||+.+|+++..++.+..                ...+++++|.+.         +++++
T Consensus        31 l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~----------------~~~V~~v~~~~~---------~~~l~   83 (318)
T 4ggc_A           31 VDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQP----------------GEYISSVAWIKE---------GNYLA   83 (318)
T ss_dssp             EEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCST----------------TCCEEEEEECTT---------SSEEE
T ss_pred             EEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCC----------------CCeEEEEEECCC---------CCEEE
Confidence            5999986 777765 99999999999998887753221                223455555553         78899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCCeeEEEEcc
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~l~~~p  169 (579)
                      +|+.||.|++||+.+++.+..+ .+|...+.++.+  ++..+++++.++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus        84 sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           84 VGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             EEECCCcEEEeecCCceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999999999988766 679988887665  5679999999999999998765 45667889999999999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEE--EEecCCCeEEEEEcCCCccccceeEE
Q 008058          170 DGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVL--SSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~--s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++++++++  |.|++||+++++.    ......|.+.|..+.++|++..++  .+++.++.|++||.......     .
T Consensus       161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~-----~  235 (318)
T 4ggc_A          161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-----S  235 (318)
T ss_dssp             TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE-----E
T ss_pred             CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc-----c
Confidence            999999998  8999999988653    455667889999999999876443  23447899999999887533     2


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKL  319 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  319 (579)
                      ...+.. .+....+.     |++..+++++  .||.|++||+++++.+.                               
T Consensus       236 ~~~~~~-~v~~~~~~-----~~~~~~~~~sg~~d~~i~iwd~~~~~~~~-------------------------------  278 (318)
T 4ggc_A          236 AVDAHS-QVCSILWS-----PHYKELISGHGFAQNQLVIWKYPTMAKVA-------------------------------  278 (318)
T ss_dssp             EEECSS-CEEEEEEE-----TTTTEEEEEECTTTCCEEEEETTTCCEEE-------------------------------
T ss_pred             ccccee-eeeeeeec-----ccccceEEEEEcCCCEEEEEECCCCcEEE-------------------------------
Confidence            333333 34455565     7888877765  69999999987665432                               


Q ss_pred             cceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          320 QDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       320 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                              ++.+|...|.+++|+|||.+| +|+|.|+++++|++.
T Consensus       279 ------------------------~l~gH~~~V~~l~~spdg~~l-~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          279 ------------------------ELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWRCF  314 (318)
T ss_dssp             ------------------------EECCCSSCEEEEEECTTSSCE-EEEETTTEEEEECCS
T ss_pred             ------------------------EEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEECC
Confidence                                    345788899999999999999 999999999999983

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.7e-31  Score=273.32  Aligned_cols=272  Identities=16%  Similarity=0.245  Sum_probs=222.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++++|++|++|+.||+|++||..+++....+.+|...+.                  ++.|   +        +..+++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~------------------~l~~---~--------~~~l~s  188 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------------------CLQY---D--------ERVIIT  188 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------------------EEEC---C--------SSEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE------------------EEEE---C--------CCEEEE
Confidence            4555899999999999999999999999988887665444                  4444   1        678999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee---eEeecCCCCeeEEEEc
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL---GKFRASTKGISCMAVS  168 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~v~~l~~~  168 (579)
                      |+.||.|++||+.+++.+..+ .+|...|.+++|+  +..+++|+.||.|++||+.+++..   ..+.+|...|.+++| 
T Consensus       189 g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          189 GSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             EETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             EcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            999999999999999988776 5799999999996  459999999999999999988765   667889999999999 


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                       +++++++|+  |.|++||+++++.+.++.+|...|.++.|+  +.++++++ .|+.|++||+++++.     +..+..+
T Consensus       265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~-~dg~i~iwd~~~~~~-----~~~~~~h  335 (435)
T 1p22_A          265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGAC-----LRVLEGH  335 (435)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCE-----EEEECCC
T ss_pred             -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe-CCCeEEEEECCCCCE-----EEEEeCC
Confidence             678898887  899999999999999999999999999995  67888887 799999999998763     3455555


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      ...+.++.+       ++.+|++|+.||.|++||+.++......               .                    
T Consensus       336 ~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~---------------~--------------------  373 (435)
T 1p22_A          336 EELVRCIRF-------DNKRIVSGAYDGKIKVWDLVAALDPRAP---------------A--------------------  373 (435)
T ss_dssp             SSCEEEEEC-------CSSEEEEEETTSCEEEEEHHHHTSTTSC---------------T--------------------
T ss_pred             cCcEEEEEe-------cCCEEEEEeCCCcEEEEECCCCCCcccc---------------c--------------------
Confidence            566666655       6789999999999999998654321100               0                    


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                 .......+.+|...|.+++|  ||.++ ++++.|+++++|++.+
T Consensus       374 -----------~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          374 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWDFLN  414 (435)
T ss_dssp             -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC---
T ss_pred             -----------cchheeeccCCCCCeEEEEe--CCCEE-EEEeCCCEEEEEECCC
Confidence                       00123355689999999999  88899 9999999999999853

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-32  Score=279.65  Aligned_cols=246  Identities=13%  Similarity=0.161  Sum_probs=205.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCC----CeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLK----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      .++|  .+++|+|++++|++|+.||.|++||+.+    ......+..|...+                  .++.|.+.+ 
T Consensus        67 ~~~v--~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~~~-  125 (416)
T 2pm9_A           67 DSKF--NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSV------------------KTVKFNAKQ-  125 (416)
T ss_dssp             SSCE--EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCC------------------CEEEECSSS-
T ss_pred             CCce--EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccce------------------EEEEEcCCC-
Confidence            4567  5669999999999999999999999987    34677676555444                  455555432 


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCe------EEEEe--cCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCC
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQ------LKWRL--SDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~------~~~~~--~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~  149 (579)
                             +.++++++.||.|++||+.+++      ....+  ..+|...|.+++|+|+ +.++++++.||.|++||++++
T Consensus       126 -------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  198 (416)
T 2pm9_A          126 -------DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK  198 (416)
T ss_dssp             -------TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT
T ss_pred             -------CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC
Confidence                   6789999999999999999876      32222  3578999999999999 789999999999999999999


Q ss_pred             ceeeEeecC------CCCeeEEEEccCC-CEEEEEC--C---eEEEEECCCC-eeeEEee-cCCCCEEEEEEec-CCCEE
Q 008058          150 SLLGKFRAS------TKGISCMAVSSDG-KMLATAA--G---QLKTFNCSDH-KKMQKFS-GHPGAVRFMTFSD-NGKYV  214 (579)
Q Consensus       150 ~~~~~~~~~------~~~v~~l~~~p~g-~~l~~~~--g---~i~vwd~~~~-~~~~~~~-~h~~~v~~l~~~~-~~~~l  214 (579)
                      +.+..+..+      ...|.+++|+|++ .++++++  +   .|++||++++ +.+..+. +|...|.+++|+| ++++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE
T ss_pred             CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE
Confidence            999888876      6799999999997 5788777  5   9999999986 6777788 8999999999999 89999


Q ss_pred             EEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEEECCCceee
Q 008058          215 LSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       215 ~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      ++++ .|+.|++||+++++.     +..+..+...+..+.|+     |++ .+|++++.||.|++||+.++...
T Consensus       279 ~s~~-~dg~v~~wd~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          279 LSSG-RDNTVLLWNPESAEQ-----LSQFPARGNWCFKTKFA-----PEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEE-SSSEEEEECSSSCCE-----EEEEECSSSCCCCEEEC-----TTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEEe-CCCCEEEeeCCCCcc-----ceeecCCCCceEEEEEC-----CCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            9988 799999999998763     34555666677788887     888 89999999999999999887644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.1e-31  Score=298.59  Aligned_cols=244  Identities=14%  Similarity=0.125  Sum_probs=205.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|+|++|++|+.||.|+|||+.+++....+..|...+..+.|+++                       
T Consensus        54 ~~~~v--~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------------  108 (814)
T 3mkq_A           54 TETPV--RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT-----------------------  108 (814)
T ss_dssp             CSSCE--EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-----------------------
T ss_pred             CCCcE--EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCC-----------------------
Confidence            35678  55599999999999999999999999999999888877665555555444                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-  159 (579)
                          +..+++++.||.|++||+.++........+|...|.+++|+| +++.+++++.||.|++||+.+++....+..+. 
T Consensus       109 ----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~  184 (814)
T 3mkq_A          109 ----KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE  184 (814)
T ss_dssp             ----SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT
T ss_pred             ----CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC
Confidence                778999999999999999988444444568999999999999 88899999999999999999888888777665 


Q ss_pred             CCeeEEEEcc--CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          160 KGISCMAVSS--DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       160 ~~v~~l~~~p--~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ..+.+++|+|  +++++++++  |.|++||+++++.+..+.+|...|.+++|+|+++++++++ .||.|++||+.+++. 
T Consensus       185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~v~vwd~~~~~~-  262 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS-EDGTLKIWNSSTYKV-  262 (814)
T ss_dssp             TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE-TTSCEEEEETTTCSE-
T ss_pred             CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcE-
Confidence            7899999999  999999998  8999999999999999999999999999999999999988 799999999988763 


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcE-EEEEEcCCeEEEEECCCce
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLY-VLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~  285 (579)
                          ...+..+...+.++.|+     |++.. +++++.++.+.+|++....
T Consensus       263 ----~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          263 ----EKTLNVGLERSWCIATH-----PTGRKNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             ----EEEECCSSSSEEEEEEC-----TTCGGGEEEEEETTEEEEEECSCCS
T ss_pred             ----EEEeecCCCcEEEEEEc-----cCCCceEEEEEeCCCEEEEEcCCCC
Confidence                34555555667778887     88763 3555567788899876543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.7e-31  Score=258.22  Aligned_cols=239  Identities=21%  Similarity=0.328  Sum_probs=201.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++|+.||.|++||+.+++++..+..|...+..+.|+++                        
T Consensus        65 ~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------  118 (312)
T 4ery_A           65 KLGI--SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ------------------------  118 (312)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------------------------
T ss_pred             CCce--EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC------------------------
Confidence            4567  55699999999999999999999999999999888877665554444443                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-cCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~  161 (579)
                         +.++++|+.||.|++||+.+++.+..+ ..|..+|.+++|+|++++|++++.||.|++||+++++.+..+. .+...
T Consensus       119 ---~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  194 (312)
T 4ery_A          119 ---SNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  194 (312)
T ss_dssp             ---SSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC
T ss_pred             ---CCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc
Confidence               788999999999999999999888666 5799999999999999999999999999999999998887764 45568


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEE--EEEe-cCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRF--MTFS-DNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~--l~~~-~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      +.+++|+|+++++++++  |.|++||+++++.+..+.+|...+..  ..++ +++.++++++ .|+.|++||+.+++.  
T Consensus       195 ~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~--  271 (312)
T 4ery_A          195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKEI--  271 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCCE--
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCchh--
Confidence            99999999999999988  89999999999999999988765433  2344 6778888877 799999999988763  


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECC
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~  282 (579)
                         +..+..+...+..+.|+     |++.++++++  .||+|++|+.+
T Consensus       272 ---~~~~~~h~~~v~~~~~~-----p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          272 ---VQKLQGHTDVVISTACH-----PTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             ---EEEECCCSSCEEEEEEC-----SSSSEEEEEECTTTCCEEEEECC
T ss_pred             ---hhhhhccCCcEEEEeec-----CcCCceEEEEccCCccEEEecCC
Confidence               34555566667777887     9999999997  59999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=274.14  Aligned_cols=275  Identities=11%  Similarity=0.130  Sum_probs=225.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++|++|+.||.|++|| .++.....+..|...+..+.|+++                        
T Consensus       108 ~~~v--~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~------------------------  160 (425)
T 1r5m_A          108 TNQV--TCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD------------------------  160 (425)
T ss_dssp             CBCE--EEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTT------------------------
T ss_pred             CCce--EEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCC------------------------
Confidence            3478  5669999999999999999999999 678888888766655554444444                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC---------------EEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG---------------VSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~---------------V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                         +.++++++.+|.|++||+.+++.+..+ ..+...               +.++.|+|++ .+++++.||.|++||+.
T Consensus       161 ---~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~  235 (425)
T 1r5m_A          161 ---GTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT  235 (425)
T ss_dssp             ---SSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT
T ss_pred             ---CCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC
Confidence               788999999999999999999988666 345555               8999999975 58899999999999999


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      +++.+..+..|...|.+++|+|+++++++++  |.|++||+++++.+..+.+|...|.++.|+|++ ++++++ .|+.|+
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~  313 (425)
T 1r5m_A          236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVR  313 (425)
T ss_dssp             CSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEE
T ss_pred             CCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEE
Confidence            9999999999999999999999999999988  899999999999999999999999999999999 888887 799999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce--------------------
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--------------------  285 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------  285 (579)
                      +||+++++.     ...+..+...+..+.|+     |++.+|++++.||.|++||+.+++                    
T Consensus       314 i~d~~~~~~-----~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (425)
T 1r5m_A          314 LWSLKQNTL-----LALSIVDGVPIFAGRIS-----QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP  383 (425)
T ss_dssp             EEETTTTEE-----EEEEECTTCCEEEEEEC-----TTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred             EEECCCCcE-----eEecccCCccEEEEEEc-----CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence            999988763     34455556677788887     999999999999999999998887                    


Q ss_pred             eecccCCceE--EeeecccCcccccccchhhhhccccceecCC
Q 008058          286 ELRNTKATKI--LSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       286 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      .+.....+..  .+.+.. ++++++    .+++++.++.++.+
T Consensus       384 ~~~~~~~~~~~~~v~~~~-~s~~~~----~l~~~~~dg~i~iw  421 (425)
T 1r5m_A          384 LYASYQSSQDNDYIFDLS-WNCAGN----KISVAYSLQEGSVV  421 (425)
T ss_dssp             EEEEECCTTCCCCEEEEE-ECTTSS----EEEEEESSSCCEEE
T ss_pred             hhhhhcCcccCCceEEEE-ccCCCc----eEEEEecCceEEEE
Confidence            5555444422  222222 566666    77778777755543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.2e-31  Score=262.38  Aligned_cols=253  Identities=15%  Similarity=0.200  Sum_probs=204.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC----eEEEEeccccccccccccccccccccccCccceEEeeec-
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV-   76 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-   76 (579)
                      +.++|  .+++|+|+|++||+|+.||+|+|||+.++    +....+..|...                  +++++|.+. 
T Consensus        10 H~~~v--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~   69 (351)
T 3f3f_A           10 HDDLV--HDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS------------------IVAIDWASPE   69 (351)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC------------------EEEEEECCGG
T ss_pred             cccce--eEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc------------------EEEEEEcCCC
Confidence            45788  55699999999999999999999999876    355555555443                  455666553 


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCC---------eEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEe
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAG---------QLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEID  145 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd  145 (579)
                      +        +.+|++|+.||.|++||+.++         +.+..+ .+|...|.+++|+|+  ++++++++.||.|++||
T Consensus        70 d--------~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           70 Y--------GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             G--------CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             C--------CCEEEEEcCCCeEEEEecCCCcccccccCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            2        678999999999999999987         344444 679999999999999  99999999999999999


Q ss_pred             CCCCceeeEee-------------cCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee--eEEeecCCCCEEEE
Q 008058          146 PLTGSLLGKFR-------------ASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK--MQKFSGHPGAVRFM  205 (579)
Q Consensus       146 ~~~~~~~~~~~-------------~~~~~v~~l~~~p~---g~~l~~~~--g~i~vwd~~~~~~--~~~~~~h~~~v~~l  205 (579)
                      +++++.+..+.             .|...+.+++|+|+   +.++++++  +.+.+|+...++.  +..+.+|...|+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~  220 (351)
T 3f3f_A          141 ALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI  220 (351)
T ss_dssp             CSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred             CCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence            99887655443             56779999999997   88998888  7787777777654  77788999999999


Q ss_pred             EEecCC----CEEEEEecCCCeEEEEEcCCCccc-----------------------------------------cceeE
Q 008058          206 TFSDNG----KYVLSSAVGERYIALWRTDGVKKQ-----------------------------------------SASCV  240 (579)
Q Consensus       206 ~~~~~~----~~l~s~s~~d~~i~vwd~~~~~~~-----------------------------------------~~~~~  240 (579)
                      +|+|++    ++|++++ .|+.|++||++.+...                                         ....+
T Consensus       221 ~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (351)
T 3f3f_A          221 SWAPSIGRWYQLIATGC-KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL  299 (351)
T ss_dssp             EECCCSSCSSEEEEEEE-TTSCEEEEEEEECC---------------------------------------CCSEEEEEE
T ss_pred             EECCCCCCcceEEEEEc-CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEE
Confidence            999998    7888887 7999999999864210                                         01244


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      ..+..+...+..+.|+     |++++|++++.||.|++||+.+++.+..
T Consensus       300 ~~~~~h~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          300 SEHDDHNGEVWSVSWN-----LTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEECTTSSCEEEEEEC-----SSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             EEEecccccEEEEEEc-----CCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            4555566678888888     9999999999999999999998765543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-31  Score=267.81  Aligned_cols=248  Identities=13%  Similarity=0.206  Sum_probs=204.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|+|++|++|+.||.|++||+.+++.+..+..|...                  +.++.|.        
T Consensus       134 ~~~v--~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------v~~~~~~--------  185 (401)
T 4aez_A          134 STYV--ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQAR------------------VGCLSWN--------  185 (401)
T ss_dssp             TCCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------------------EEEEEEE--------
T ss_pred             CCCE--EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCc------------------eEEEEEC--------
Confidence            4678  56699999999999999999999999999998888755543                  3455661        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++|+.+|.|++||+...........+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...|
T Consensus       186 ---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          186 ---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             ---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             ---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence               66899999999999999995443334446799999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCcccc
Q 008058          163 SCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVKKQS  236 (579)
Q Consensus       163 ~~l~~~p~g~-~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~~~~  236 (579)
                      .+++|+|++. ++++++    +.|++||+++++.+..+. |...|.+++|+|+++++++++ ..|+.|++|++.+++.. 
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-  340 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-  340 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-
Confidence            9999999765 555542    899999999999988886 678899999999999998853 36999999999886533 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        ....+..+...+..+.|+     |+|.+|++++.||.|++|++.+++.+...
T Consensus       341 --~~~~~~~h~~~v~~~~~s-----~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          341 --KQVDIPAHDTRVLYSALS-----PDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             --EEEEEECCSSCCCEEEEC-----TTSSEEEEECTTSEEEEEECCC-------
T ss_pred             --eEEEecCCCCCEEEEEEC-----CCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence              334455566667778887     99999999999999999999998876543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-31  Score=272.90  Aligned_cols=236  Identities=14%  Similarity=0.143  Sum_probs=197.7

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .+|+|+|++|++|+.||.|++||+.+++....+..|...+..+.|+++                           +.+|+
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---------------------------~~~l~  155 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPS---------------------------GEALI  155 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTT---------------------------SSEEE
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCC---------------------------CCEEE
Confidence            378999999999999999999999999988877766665555555444                           78899


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC---CCCee----
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGIS----  163 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~v~----  163 (579)
                      +|+.||.|++||+.+++.+..+ .+|...|++++|+|++++|++++.||+|++||+++++.+..+..+   ...+.    
T Consensus       156 s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          156 SSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             EEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            9999999999999999887666 679999999999999999999999999999999999999888753   33444    


Q ss_pred             -----------------EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCC-EEEEEecCCC
Q 008058          164 -----------------CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGK-YVLSSAVGER  222 (579)
Q Consensus       164 -----------------~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~-~l~s~s~~d~  222 (579)
                                       +++|+|+|+++++++  |.|++||+++++.+..+. +|...|.+++|+|+++ ++++++ .||
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~-~dg  313 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY-ENG  313 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE-TTS
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe-CCC
Confidence                             455578999999988  899999999998877764 5889999999999999 888887 799


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      .|++||+++++..   ......++...+.++++      +++.+|++++.||.|++|++...
T Consensus       314 ~i~vwd~~~~~~~---~~~~~~~~~~~v~~~~~------~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          314 MLAQWDLRSPECP---VGEFLINEGTPINNVYF------AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             EEEEEETTCTTSC---SEEEEESTTSCEEEEEE------ETTEEEEEETTTEEEEEEEECCT
T ss_pred             eEEEEEcCCCcCc---hhhhhccCCCCceEEEe------CCCCEEEEecCCccEEEEeccCC
Confidence            9999999987542   11222345667777766      57889999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-31  Score=265.76  Aligned_cols=278  Identities=14%  Similarity=0.118  Sum_probs=219.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.++|  .+++|+|+|++|++++.||.|+||++.++.   ....+..|.                  ..+.+++|.+.  
T Consensus        10 h~~~v--~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~--   67 (342)
T 1yfq_A           10 PKDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK------------------HPLLCCNFIDN--   67 (342)
T ss_dssp             CSSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECS------------------SCEEEEEEEES--
T ss_pred             CCCcE--EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecC------------------CceEEEEECCC--
Confidence            35678  566999999999999999999999998776   223333333                  34556677664  


Q ss_pred             ccccccCCc-EEEEEECCCeEEEEEc-cCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC------
Q 008058           79 KKKRKLGSS-LLVLGTGGGDVLALAV-SAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGADGMVCEIDPLT------  148 (579)
Q Consensus        79 ~~~~~~~~~-~l~~~~~~g~i~iwd~-~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~------  148 (579)
                             +. ++++|+.+|.|++||+ .+++.  ....+  |...|++++|+| ++.+++++.|+.|++||+++      
T Consensus        68 -------~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~  137 (342)
T 1yfq_A           68 -------TDLQIYVGTVQGEILKVDLIGSPSF--QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             -------SSEEEEEEETTSCEEEECSSSSSSE--EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             -------CCcEEEEEcCCCeEEEEEeccCCce--EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc
Confidence                   67 8999999999999999 88766  33367  999999999999 99999999999999999987      


Q ss_pred             ---CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-Ce--eeEEeecCCCCEEEEEEec-CCCEEEEEec
Q 008058          149 ---GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-HK--KMQKFSGHPGAVRFMTFSD-NGKYVLSSAV  219 (579)
Q Consensus       149 ---~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-~~--~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~  219 (579)
                         ++.+..+. |...|.+++|+|++  +++++  +.|++||+++ +.  .......|...|.+++|+| +++++++++ 
T Consensus       138 ~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~-  213 (342)
T 1yfq_A          138 AVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-  213 (342)
T ss_dssp             EEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-
T ss_pred             cccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe-
Confidence               77777777 88899999999987  55555  8999999998 54  3334557889999999999 999999988 


Q ss_pred             CCCeEEEEEcCCC--ccccceeEEeeecCc---------eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          220 GERYIALWRTDGV--KKQSASCVLAMEHPA---------VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       220 ~d~~i~vwd~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .|+.|++|+++..  ... ......+..+.         ..+..+.|+     |++.+|++++.||.|++||+.+++.+.
T Consensus       214 ~dg~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYN-SSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             TTSEEEEEECCTTCCSTT-CTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEEcCCCcccc-cccceeeecccccccccccceeEEEEEEc-----CCCCEEEEecCCceEEEEcCccHhHhh
Confidence            6999999999876  100 00122333332         367788887     999999999999999999987765432


Q ss_pred             ccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecC-CCCcEEEeecCCcceeecc
Q 008058          289 NTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVN-SGEDINLNCSQDGVLLPMS  367 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~~s  367 (579)
                      .                                                       +.+| ...|.+++  |||.+| ++
T Consensus       288 ~-------------------------------------------------------~~~~h~~~v~~~~--~~~~~l-~s  309 (342)
T 1yfq_A          288 N-------------------------------------------------------FAKFNEDSVVKIA--CSDNIL-CL  309 (342)
T ss_dssp             E-------------------------------------------------------CCCCSSSEEEEEE--ECSSEE-EE
T ss_pred             h-------------------------------------------------------hhcccCCCceEec--CCCCeE-EE
Confidence            2                                                       1244 66788888  999999 99


Q ss_pred             ccceec-ccceee
Q 008058          368 QSLLKS-KRGRYV  379 (579)
Q Consensus       368 ~s~d~~-~~~w~~  379 (579)
                      ++.|++ .+.++.
T Consensus       310 ~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          310 ATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECTHHHHCSSS
T ss_pred             EecCCcccccccc
Confidence            999998 666653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.8e-31  Score=257.48  Aligned_cols=235  Identities=14%  Similarity=0.169  Sum_probs=189.1

Q ss_pred             CcEEEEEECCCeEEEEEccCC--eEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAG--QLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~--~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.+|++|+.|+.|++||+..+  +.+..+ .+|.++|++++|+|  ++++|++|+.|++|++||+.+++  .+..+.+|.
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~   99 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS   99 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence            889999999999999999754  444444 68999999999986  48999999999999999998874  566778899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEecC-------------CCEEEEEecC
Q 008058          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDN-------------GKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~-------------~~~l~s~s~~  220 (579)
                      ..|.+++|+|+  |.+|++++  +.|++||++++.  ....+.+|...|.+++|+|+             +++|++++ .
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~  178 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  178 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-T
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-C
Confidence            99999999997  88999988  899999998763  24567899999999999997             46888887 7


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      |++|++||++.++.. ......+..+...+..+.|+     |+   +.+|++++.||+|++||+++.....     ... 
T Consensus       179 D~~v~lwd~~~~~~~-~~~~~~l~~H~~~V~~v~~s-----p~~~~~~~las~s~D~~v~iWd~~~~~~~~-----~~~-  246 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYMASVSQDRTCIIWTQDNEQGPW-----KKT-  246 (297)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCC-----EEE-
T ss_pred             CCcEEEEEEcCCCce-EEEEEEecCCCCceEEEEEC-----CCCCCceEEEEEECCCcEEEEEeCCCCCcc-----cee-
Confidence            999999999876522 11334556667778888888     77   4899999999999999976532100     000 


Q ss_pred             eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                     . .                            ....|...|.+++|+|||.+| ++++.|+++++|
T Consensus       247 ---------------~-~----------------------------~~~~~~~~v~~~~~s~~g~~l-as~~~D~~v~lw  281 (297)
T 2pm7_B          247 ---------------L-L----------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  281 (297)
T ss_dssp             ---------------E-S----------------------------SSSCCSSCEEEEEECSSSCCE-EEEETTSCEEEE
T ss_pred             ---------------e-e----------------------------ecccCCCcEEEEEECCCCCEE-EEEcCCCcEEEE
Confidence                           0 0                            001356689999999999999 999999999999


Q ss_pred             ee
Q 008058          378 YV  379 (579)
Q Consensus       378 ~~  379 (579)
                      +.
T Consensus       282 ~~  283 (297)
T 2pm7_B          282 KE  283 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-31  Score=265.23  Aligned_cols=250  Identities=16%  Similarity=0.200  Sum_probs=203.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++||+|+.||.|+|||+.  +++....+..|...+                  +++.|.+..  
T Consensus        10 h~~~v--~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v------------------~~~~~~~~~--   67 (379)
T 3jrp_A           10 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV------------------WRVDWAHPK--   67 (379)
T ss_dssp             CCCCE--EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE------------------EEEEECCGG--
T ss_pred             CcccE--EEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcE------------------EEEEeCCCC--
Confidence            45788  556999999999999999999999998  556666676555444                  455554321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~  153 (579)
                           ++.+|++|+.||.|++||+.+++  .+..+ .+|...|++++|+|+  +++|++++.||.|++||+.++.  ...
T Consensus        68 -----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           68 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             -----GCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             -----CCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE
Confidence                 16789999999999999999987  44343 679999999999999  9999999999999999998873  444


Q ss_pred             EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCCe----eeEEeecCCCCEEEEEEecC---C
Q 008058          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDHK----KMQKFSGHPGAVRFMTFSDN---G  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--g~i~vwd~~~~~----~~~~~~~h~~~v~~l~~~~~---~  211 (579)
                      .+..|...|.+++|+|             +++++++++  |.|++||+++++    ....+.+|...|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            5778999999999999             689999987  899999998754    45678899999999999999   8


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ++|++++ .|+.|++||++.+.............+...+..+.|+     |++.+|++++.||.|++|++....
T Consensus       222 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          222 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             EEEEEEE-TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-----SSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CeEEEEe-CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc-----CCCCEEEEecCCCcEEEEeCCCCC
Confidence            8999887 7999999999987533111222223355567778887     999999999999999999987543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.8e-31  Score=265.94  Aligned_cols=243  Identities=12%  Similarity=0.202  Sum_probs=202.9

Q ss_pred             CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .+|  .+++|+|+    |++|++|+.||.|++||+.+++.+..+..|...+..                  +.|.+.+  
T Consensus        70 ~~v--~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~------------------~~~~~~~--  127 (366)
T 3k26_A           70 ENF--YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINE------------------LKFHPRD--  127 (366)
T ss_dssp             CCE--EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEE------------------EEECSSC--
T ss_pred             CcE--EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEE------------------EEECCCC--
Confidence            557  66699999    679999999999999999999999888766655554                  4444422  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                            +.++++|+.||.|++||+.+++.+..+.  .+|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus       128 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          128 ------PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             ------TTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             ------CCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence                  7889999999999999999998876662  57999999999999999999999999999999998765544443


Q ss_pred             ----------------------------CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--------------eE
Q 008058          158 ----------------------------STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--------------MQ  193 (579)
Q Consensus       158 ----------------------------~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--------------~~  193 (579)
                                                  |...|.+++|+  ++++++++  |.|++||+++++.              +.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                        88899999998  67899888  8999999987643              78


Q ss_pred             EeecCCCCEEEEEEecC--CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEE
Q 008058          194 KFSGHPGAVRFMTFSDN--GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       194 ~~~~h~~~v~~l~~~~~--~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s  269 (579)
                      .+.+|...|.+++|+|+  +++|++++ .||.|++||+..++... .....+..+  ...+..+.|+     |++++|++
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s  352 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFS-----RDSSILIA  352 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEEC-----TTSSEEEE
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeC-----CCCCeEEE
Confidence            88999999999999999  99999987 79999999999876442 122334444  5677888888     99999999


Q ss_pred             EEcCCeEEEEECCC
Q 008058          270 ISETGVCYIWYGQN  283 (579)
Q Consensus       270 ~~~dg~i~iwd~~~  283 (579)
                      ++.||.|++||+.+
T Consensus       353 ~~~dg~i~iwd~~~  366 (366)
T 3k26_A          353 VCDDASIWRWDRLR  366 (366)
T ss_dssp             EETTSEEEEEEC--
T ss_pred             EeCCCEEEEEEecC
Confidence            99999999999753

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=6.5e-31  Score=267.56  Aligned_cols=280  Identities=14%  Similarity=0.180  Sum_probs=217.5

Q ss_pred             EEEccCCCE-EEEEeCCCcEEEEECCCCeEE----EEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058           11 TSFSPALDY-FAICSGDARIKIWDTLKGQVQ----TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus        11 ~~fs~dg~~-las~s~dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      ++++|+... +++++.||.|+||++......    ..+.+|.                  ..+++++|.+.+        
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~------------------~~V~~~~~~p~~--------   93 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHT------------------APVLDIAWCPHN--------   93 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCS------------------SCEEEEEECTTC--------
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCC------------------CCEEEEEeCCCC--------
Confidence            478887754 445788999999998654321    1222232                  345667776633        


Q ss_pred             CcEEEEEECCCeEEEEEccCC-------eEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEe--
Q 008058           86 SSLLVLGTGGGDVLALAVSAG-------QLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKF--  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~-------~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~--  155 (579)
                      +.+|++|+.||.|++||+.++       +.+..+ .+|...|++++|+|++ ++|++++.||.|++||+.+++.+..+  
T Consensus        94 ~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             TTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            788999999999999999987       344344 5799999999999998 69999999999999999999999999  


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCC-EEEEEEecCCCEEEEEe--cCCCeEEEEEc
Q 008058          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGA-VRFMTFSDNGKYVLSSA--VGERYIALWRT  229 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~-v~~l~~~~~~~~l~s~s--~~d~~i~vwd~  229 (579)
                      ..|...|.+++|+|++++|++++  |.|++||+++++.+..+ .+|.+. +.++.|+|++++++++.  +.|+.|++||+
T Consensus       173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT  252 (402)
T ss_dssp             TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence            78999999999999999999987  89999999999999998 788876 89999999999888872  26999999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCcee-ecccCCceEEeeecccCcccc
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEE-LRNTKATKILSSSEDVNSKSQ  307 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~  307 (579)
                      +..+...  ......+.. .+..+.|+     |++.+|+++ +.||.|++||+.+++. +..                  
T Consensus       253 ~~~~~~~--~~~~~~~~~-~v~~~~~s-----~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~------------------  306 (402)
T 2aq5_A          253 KHLEEPL--SLQELDTSS-GVLLPFFD-----PDTNIVYLCGKGDSSIRYFEITSEAPFLHY------------------  306 (402)
T ss_dssp             TBCSSCS--EEEECCCCS-SCEEEEEE-----TTTTEEEEEETTCSCEEEEEECSSTTCEEE------------------
T ss_pred             ccccCCc--eEEeccCCC-ceeEEEEc-----CCCCEEEEEEcCCCeEEEEEecCCCcceEe------------------
Confidence            8876421  223333443 35566777     899999754 5799999999876542 100                  


Q ss_pred             cccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          308 KSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       308 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                                        +... .|...+.+++|+|||.++ +++  |+.+++|++..
T Consensus       307 ----------------------------------l~~~-~~~~~v~~~~~sp~~~~~-~s~--~~~~~~~~l~~  342 (402)
T 2aq5_A          307 ----------------------------------LSMF-SSKESQRGMGYMPKRGLE-VNK--CEIARFYKLHE  342 (402)
T ss_dssp             ----------------------------------EEEE-CCSSCCSEEEECCGGGSC-GGG--TEEEEEEEEET
T ss_pred             ----------------------------------eccc-ccCCcccceEEecccccc-eec--ceeEEEEEcCC
Confidence                                              0011 145689999999999998 664  56899999853

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=6.7e-30  Score=256.02  Aligned_cols=280  Identities=13%  Similarity=0.099  Sum_probs=216.2

Q ss_pred             CCCcccceEEEEccC---CCEEEEEeCCCcEEEEECCC-CeEE-EEeccccccccccccccccccccccCccceEEeeec
Q 008058            2 GSSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLK-GQVQ-TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      +.++|  .+++|+|+   |++|++|+.||.|+|||+.+ +... ..+..|...+.                  +++|.+.
T Consensus        38 h~~~v--~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~   97 (368)
T 3mmy_A           38 PDDSI--GCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL------------------DVCWSDD   97 (368)
T ss_dssp             CSSCE--EEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE------------------EEEECTT
T ss_pred             CCCce--EEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE------------------EEEECcC
Confidence            35778  56699999   69999999999999999987 5554 56665555554                  4444442


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                               +.+|++++.||.|++||+.+++.+..  .+|...|++++|  +|++++|++++.||.|++||+++++.+..
T Consensus        98 ---------~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           98 ---------GSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             ---------SSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             ---------CCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence                     78899999999999999999988753  469999999999  89999999999999999999999999998


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCE----EEEEecCCCeEEE
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKY----VLSSAVGERYIAL  226 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~----l~s~s~~d~~i~v  226 (579)
                      +..+. .+.++.+.++  .+++++  +.+++|+++........  ..+...+..+.+.++...    +++++ .|+.|++
T Consensus       167 ~~~~~-~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i  242 (368)
T 3mmy_A          167 LQLPE-RCYCADVIYP--MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAI  242 (368)
T ss_dssp             EECSS-CEEEEEEETT--EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEE
T ss_pred             EecCC-CceEEEecCC--eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec-CCCcEEE
Confidence            88664 6677777654  444444  89999999876543322  234456677777766554    88877 7999999


Q ss_pred             EEcCCCccccceeEEeeecCce------------eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCce
Q 008058          227 WRTDGVKKQSASCVLAMEHPAV------------FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      |+++......  ....+..+..            .+..+.|+     |++.+|++++.||.|++||+.+++.+.      
T Consensus       243 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----p~~~~l~s~~~dg~i~iwd~~~~~~~~------  309 (368)
T 3mmy_A          243 HYINPPNPAK--DNFTFKCHRSNGTNTSAPQDIYAVNGIAFH-----PVHGTLATVGSDGRFSFWDKDARTKLK------  309 (368)
T ss_dssp             EESSCSCHHH--HSEEEECSEEC----CCCEEECCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEE------
T ss_pred             EecCCCCccc--cceeeeeeecccccccccccccceEEEEEe-----cCCCEEEEEccCCeEEEEECCCCcEEE------
Confidence            9998874311  2233333333            57788887     999999999999999999987665432      


Q ss_pred             EEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecc
Q 008058          295 ILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSK  374 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~  374 (579)
                                                                       .+.+|...|.+++|+|||.+| +++|.|+..
T Consensus       310 -------------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~s~d~~~  339 (368)
T 3mmy_A          310 -------------------------------------------------TSEQLDQPISACCFNHNGNIF-AYASSYDWS  339 (368)
T ss_dssp             -------------------------------------------------ECCCCSSCEEEEEECTTSSCE-EEEECCCST
T ss_pred             -------------------------------------------------EecCCCCCceEEEECCCCCeE-EEEeccccc
Confidence                                                             223567789999999999999 999888877


Q ss_pred             cceee
Q 008058          375 RGRYV  379 (579)
Q Consensus       375 ~~w~~  379 (579)
                      +.|++
T Consensus       340 ~~~~~  344 (368)
T 3mmy_A          340 KGHEF  344 (368)
T ss_dssp             TCGGG
T ss_pred             ccccc
Confidence            77765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.98  E-value=5.7e-30  Score=279.32  Aligned_cols=241  Identities=17%  Similarity=0.203  Sum_probs=199.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++.+|  .+++|+|+|++|++|+.||+|+|||+.++.+...+.+|...+.++.|+++                       
T Consensus       429 h~~~v--~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~-----------------------  483 (694)
T 3dm0_A          429 HSHFV--EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD-----------------------  483 (694)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT-----------------------
T ss_pred             CCCcE--EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCC-----------------------
Confidence            34667  55699999999999999999999999999999999887776665555555                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                          +..|++|+.|+.|++||..........  ..+|...|.+++|+|++  ..+++++.|++|++||+++++....+.+
T Consensus       484 ----~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~  559 (694)
T 3dm0_A          484 ----NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG  559 (694)
T ss_dssp             ----SSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence                778999999999999998765443222  24788999999999987  5799999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |.+.|++++|+|+|++|++|+  |.|++||+++++.+..+. +...|.+++|+|++.++++++  |+.|++||++++...
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT--EHGIKIWDLESKSIV  636 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc--CCCEEEEECCCCCCh
Confidence            999999999999999999998  899999999999888776 456899999999998877664  677999999987633


Q ss_pred             cceeEEeee-----------------cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          236 SASCVLAME-----------------HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       236 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      .   .+...                 .....+..+.|+     |+|++|++|+.||+|++|++.
T Consensus       637 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-----pdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          637 E---DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS-----ADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             E---EECCCCC----------------CCCCEEEEEEC-----TTSSEEEEEETTSEEEEEEC-
T ss_pred             h---hhccccccccccccccccccCCceeEEeeeEEEc-----CCCCEEEEEcCCCeEEEEecc
Confidence            1   11000                 011124567777     999999999999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=4.7e-31  Score=268.22  Aligned_cols=293  Identities=10%  Similarity=-0.011  Sum_probs=219.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccccccccccc---------------cc-ccccCccceEE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRL---------------ER-EHLSVDYTCMK   72 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~   72 (579)
                      .+++|||||+++|+++.|++|+  |...+++   +++|...+..+.|+|+-               .. .| ...+.+++
T Consensus        19 ~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~va   92 (588)
T 2j04_A           19 NNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRVCK   92 (588)
T ss_dssp             CCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEEEE
Confidence            4559999999999999999999  7666654   46888888888776541               00 22 45578888


Q ss_pred             eeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCC-----CEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           73 WLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG-----GVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        73 w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      |.|.         +..|++++.+|.|++||...  ++..+ . |..     .|.+++|+|||++|++|+.||+|++||+.
T Consensus        93 wSPd---------G~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           93 PSPI---------DDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             ECSS---------SSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             ECCC---------CCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            9885         78899999999999999544  44444 4 554     59999999999999999999999999999


Q ss_pred             CCce-------eeEe----ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCee---eEEe-ecCCCCEEEEEEecCC
Q 008058          148 TGSL-------LGKF----RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKK---MQKF-SGHPGAVRFMTFSDNG  211 (579)
Q Consensus       148 ~~~~-------~~~~----~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~---~~~~-~~h~~~v~~l~~~~~~  211 (579)
                      ++..       +.++    .+|...|.+++|+|+| +++++. +.|++||+.+++.   ..++ .+|...|.+++|+  |
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence            8753       5666    5677899999999999 555555 8999999988773   3567 4788999999999  6


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEe--cCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI--DNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      +++++++  +++|++||+.+++..    ....+| ...+..+.+  +     |++..+++++.||+ ++|..+.      
T Consensus       237 ~~LASa~--~~tIkLWd~~~~~~~----~~~~gh-~~~V~~va~~~s-----~d~~~La~a~edG~-klw~~d~------  297 (588)
T 2j04_A          237 YKVVLTC--PGYVHKIDLKNYSIS----SLKTGS-LENFHIIPLNHE-----KESTILLMSNKTSY-KVLLEDE------  297 (588)
T ss_dssp             TEEEEEC--SSEEEEEETTTTEEE----EEECSC-CSCCCEEEETTC-----SSCEEEEECSSCEE-EEEESSS------
T ss_pred             CEEEEEe--CCeEEEEECCCCeEE----EEEcCC-CceEEEEEeeeC-----CCCCEEEEEcCCCC-EEEeecc------
Confidence            7888875  699999999987642    234344 444555677  6     89999999999999 9998771      


Q ss_pred             cCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccc
Q 008058          290 TKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQS  369 (579)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s  369 (579)
                           ..      +++++.    .+++.  ++.++.|+.     .|..    +..+.+ ...|.+++|||||+.+ ++++
T Consensus       298 -----~~------~spd~~----l~a~~--d~~v~lW~~-----~g~~----l~~~~~-~~~I~~va~SPdG~~l-A~~~  349 (588)
T 2j04_A          298 -----LH------VTADNI----IAPYL--EKKFKKWST-----IWNE----FNNYET-TLVIHGISLSPDGYSI-AIVY  349 (588)
T ss_dssp             -----EE------EECCCS----SHHHH--HHHHHHTTT-----TTTS----SSSSCC-EEEEEEEEECTTSSEE-EEEE
T ss_pred             -----EE------ECCCce----EEEEc--CCEEEEEEC-----CCCc----eeeecc-ceEEEEEEECCCCCEE-EEEE
Confidence                 11      345544    33333  666666541     1111    222222 4568999999999999 7776


Q ss_pred             c
Q 008058          370 L  370 (579)
Q Consensus       370 ~  370 (579)
                      .
T Consensus       350 ~  350 (588)
T 2j04_A          350 D  350 (588)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=3.5e-30  Score=258.79  Aligned_cols=248  Identities=12%  Similarity=0.171  Sum_probs=200.5

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEe--ccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|  .+++|+|++++|++++.||.|++||+.+++....+  ..|..                  .+.++.|.+.    
T Consensus        52 ~~~v--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~----  107 (372)
T 1k8k_C           52 NGQV--TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR------------------AARCVRWAPN----  107 (372)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS------------------CEEEEEECTT----
T ss_pred             CCcc--cEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC------------------ceeEEEECCC----
Confidence            4677  55699999999999999999999999988765544  22333                  3455666543    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC-----------
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP-----------  146 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~-----------  146 (579)
                           +.++++++.+|.|++||+..+.   ....+..+|...|.+++|+|++++|++++.||.|++||+           
T Consensus       108 -----~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          108 -----EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             -----SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             -----CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence                 7889999999999999999876   344555778999999999999999999999999999995           


Q ss_pred             -------CCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          147 -------LTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       147 -------~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                             ..++.+..+..|...|.+++|+|++++|++++  |.|++||+++++.+..+..|..+|.+++|+|++++++++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred             cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence                   46788888989999999999999999999988  899999999999999999999999999999999877665


Q ss_pred             ecCCCeEEEEEcCC--Cccc---------------------------cceeE------Eee--ecCceeeEeE-EecCCc
Q 008058          218 AVGERYIALWRTDG--VKKQ---------------------------SASCV------LAM--EHPAVFMDCR-CIDNGG  259 (579)
Q Consensus       218 s~~d~~i~vwd~~~--~~~~---------------------------~~~~~------~~~--~~~~~~~~~~-~~~~~~  259 (579)
                        .|+.|++|++..  ++..                           .....      ..+  .|.. .+.++ +++   
T Consensus       263 --~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~---  336 (372)
T 1k8k_C          263 --HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN-SVSQISVLS---  336 (372)
T ss_dssp             --TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS-CEEEEEEEE---
T ss_pred             --eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC-CcceeEEec---
Confidence              599999999987  3200                           00000      111  3444 44555 455   


Q ss_pred             ccCCC---cEEEEEEcCCeEEEEECCCceee
Q 008058          260 VDDAG---LYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       260 ~~~~~---~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                        ++|   .+|++++.||.|++||+++++.+
T Consensus       337 --~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          337 --GGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             --STTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             --CCCcceeeEEEecCCCceEEEEecChhHh
Confidence              677   99999999999999999877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.1e-29  Score=249.85  Aligned_cols=246  Identities=16%  Similarity=0.192  Sum_probs=199.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|  .+++|+|+|++|++|+.|+.|++|+...+........+........+.+.                        
T Consensus        86 ~~~V--~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  139 (340)
T 4aow_A           86 SHFV--SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD------------------------  139 (340)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTT------------------------
T ss_pred             CCCE--EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeec------------------------
Confidence            4678  55699999999999999999999999988877766544433332222222                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG--SCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +..+++|+.|+.+++||............+|...+..++|++++  .++++++.|+.|++||+.+++.+..+.+|..
T Consensus       140 ---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~  216 (340)
T 4aow_A          140 ---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG  216 (340)
T ss_dssp             ---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             ---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC
Confidence               67899999999999999988877666667899999999999865  5688999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS--  236 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~--  236 (579)
                      .|++++|+|++++|++|+  |.|++||+++.+.+..+.. ...|.++.|+|++.++ +++ .|+.|++||++......  
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~-~d~~i~iwd~~~~~~~~~~  293 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAA-TGPSIKIWDLEGKIIVDEL  293 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEE-ETTEEEEEETTTTEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-ecc-CCCEEEEEECCCCeEEEec
Confidence            999999999999999998  8999999999999988875 4689999999998655 455 49999999998765321  


Q ss_pred             --ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                        .........+...+.+++|+     |+|++|++|+.||.|+|||+.+|.
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWS-----ADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEEC-----TTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEEC-----CCCCEEEEEeCCCEEEEEeCCCcC
Confidence              00111222445566778887     999999999999999999999885

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=8.6e-31  Score=257.34  Aligned_cols=235  Identities=13%  Similarity=0.100  Sum_probs=189.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE-EEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCC--ceeeEeecCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQL-KWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTG--SLLGKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~--~~~~~~~~~~~  160 (579)
                      +++|++|+.|+.|++||+.++.. ....+.+|.++|++++|+|  ++++|++|+.|++|++||++++  +....+.+|..
T Consensus        25 g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~  104 (316)
T 3bg1_A           25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDS  104 (316)
T ss_dssp             GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSS
T ss_pred             CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCC
Confidence            78899999999999999998753 2233468999999999986  4889999999999999999887  45667888999


Q ss_pred             CeeEEEEccC--CCEEEEEC--CeEEEEECCCCee---eEEeecCCCCEEEEEEecC-----------------CCEEEE
Q 008058          161 GISCMAVSSD--GKMLATAA--GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDN-----------------GKYVLS  216 (579)
Q Consensus       161 ~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~-----------------~~~l~s  216 (579)
                      .|.+++|+|+  |.+|++|+  +.|++||++++..   ...+.+|...|.++.|+|+                 +++|++
T Consensus       105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  184 (316)
T 3bg1_A          105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS  184 (316)
T ss_dssp             CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred             ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence            9999999998  88999998  8999999987632   3456789999999999997                 367888


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC----cEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ++ .|++|++||++.....  .+...+..+...+..+.|+     |++    .+|++++.||+|++|++++...-     
T Consensus       185 gs-~D~~v~lWd~~~~~~~--~~~~~l~~h~~~V~~v~~s-----p~~~~~~~~las~s~D~~v~iw~~~~~~~~-----  251 (316)
T 3bg1_A          185 GG-CDNLIKLWKEEEDGQW--KEEQKLEAHSDWVRDVAWA-----PSIGLPTSTIASCSQDGRVFIWTCDDASSN-----  251 (316)
T ss_dssp             CB-TTSBCCEEEECTTSCE--EEEECCBCCSSCEEEEECC-----CCSSCSCCEEEEEETTCEEEEEECSSTTCC-----
T ss_pred             ec-CCCeEEEEEeCCCCcc--ceeeecccCCCceEEEEec-----CCCCCCCceEEEEcCCCeEEEEEccCcccc-----
Confidence            87 7999999999754311  1344555666777888888     775    89999999999999997653110     


Q ss_pred             ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                                   ...                                 ...+..|...|.+++|+|||.+| ++++.|+
T Consensus       252 -------------~~~---------------------------------~~~~~~~~~~v~~v~~sp~g~~l-as~~~D~  284 (316)
T 3bg1_A          252 -------------TWS---------------------------------PKLLHKFNDVVWHVSWSITANIL-AVSGGDN  284 (316)
T ss_dssp             -------------CCB---------------------------------CCEEEECSSCEEEEEECTTTCCE-EEEESSS
T ss_pred             -------------chh---------------------------------hhhhhcCCCcEEEEEEcCCCCEE-EEEcCCC
Confidence                         000                                 00123567789999999999999 9999999


Q ss_pred             cccceeee
Q 008058          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      ++++|+..
T Consensus       285 ~v~lw~~~  292 (316)
T 3bg1_A          285 KVTLWKES  292 (316)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99999873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=2.4e-30  Score=262.58  Aligned_cols=250  Identities=14%  Similarity=0.117  Sum_probs=204.4

Q ss_pred             CCcccceEEEEccC----C---CEEEEEeCCCcEEEEECCCCeE-----EEEeccccccccccccccccccccccCccce
Q 008058            3 SSNIRDILTSFSPA----L---DYFAICSGDARIKIWDTLKGQV-----QTEFADIASTETTSLYGNRLEREHLSVDYTC   70 (579)
Q Consensus         3 ~~~V~~~~~~fs~d----g---~~las~s~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (579)
                      ..+|  .+++|+|+    |   ++|++++.||.|++||+.+++.     ...+..+....             ....+.+
T Consensus        62 ~~~v--~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~  126 (397)
T 1sq9_A           62 KSGL--HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-------------KKHSFWA  126 (397)
T ss_dssp             TTCE--EEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-------------GGSCEEE
T ss_pred             CCcE--EEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeeccccccc-------------CCCcEEE
Confidence            4677  56699999    9   9999999999999999988775     66665442000             0235667


Q ss_pred             EEeeecc-cccccccCCcE-EEEEECCCeEEEEEccC------CeEEE-----Eec------CCCCCCEEEEEEccCCCE
Q 008058           71 MKWLSVD-RKKKRKLGSSL-LVLGTGGGDVLALAVSA------GQLKW-----RLS------DCHPGGVSAISFATHGSC  131 (579)
Q Consensus        71 ~~w~~~~-~~~~~~~~~~~-l~~~~~~g~i~iwd~~~------~~~~~-----~~~------~~h~~~V~~l~~~~~~~~  131 (579)
                      +.|.+.. ++      +.. +++++.+|.|++||+.+      ++.+.     .+.      ..|...|++++|+|++ +
T Consensus       127 ~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          127 LKWGASNDRL------LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             EEEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             EEEeeccCCC------CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            7777211 11      677 99999999999999998      65543     332      4588999999999999 9


Q ss_pred             EEEEeCCCcEEEEeCCCCceeeEeec---C---CCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeec---
Q 008058          132 IYSAGADGMVCEIDPLTGSLLGKFRA---S---TKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSG---  197 (579)
Q Consensus       132 l~s~~~dg~v~iwd~~~~~~~~~~~~---~---~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~---  197 (579)
                      +++++.||.|++||+++++.+..+..   |   ...|.+++|+|++++|++++     |.|++||+++++.+..+.+   
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            99999999999999999999999998   8   89999999999999999986     4899999999999999998   


Q ss_pred             ----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee------cC---------------
Q 008058          198 ----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME------HP---------------  246 (579)
Q Consensus       198 ----------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~------~~---------------  246 (579)
                                |...|.+++|+|++++|++++ .|+.|++||+.+++..     ..+.      .+               
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERI-----TTLNMHCDDIEIEEDILAVDEHGDSLA  353 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEE-----EEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCcee-----EEEecccCcccchhhhhcccccccccc
Confidence                      999999999999999999988 7999999999987643     3344      33               


Q ss_pred             ceeeEeEEecCCcccCCC----------cEEEEEEcCCeEEEEECCCce
Q 008058          247 AVFMDCRCIDNGGVDDAG----------LYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ...+..+.|+     |++          .+|++++.||.|++|++++++
T Consensus       354 ~~~v~~~~~~-----~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          354 EPGVFDVKFL-----KKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             SCCEEEEEEE-----CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             CCceeEEEec-----cccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            5667788887     887          799999999999999988763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.3e-30  Score=255.01  Aligned_cols=285  Identities=13%  Similarity=0.053  Sum_probs=204.3

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe----EEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCc
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ----LKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGM  140 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~  140 (579)
                      .+++++|.+.         +.+|++|+.||.|++||+.++.    .... ..+|...|++++|+|  ++++|++++.||.
T Consensus        13 ~v~~~~~~~~---------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A           13 LVHDVVYDFY---------GRHVATCSSDQHIKVFKLDKDTSNWELSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CEEEEEECSS---------SSEEEEEETTSEEEEEEECSSSCCEEEEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             ceeEEEEcCC---------CCEEEEeeCCCeEEEEECCCCCCcceecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            5666777653         7889999999999999999763    3333 367999999999999  6999999999999


Q ss_pred             EEEEeCCCC---------ceeeEeecCCCCeeEEEEccC--CCEEEEEC--CeEEEEECCCCeeeEEee-----------
Q 008058          141 VCEIDPLTG---------SLLGKFRASTKGISCMAVSSD--GKMLATAA--GQLKTFNCSDHKKMQKFS-----------  196 (579)
Q Consensus       141 v~iwd~~~~---------~~~~~~~~~~~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~~~~~~~-----------  196 (579)
                      |++||+.++         +.+..+..|...|.+++|+|+  ++++++++  |.|++||+++++.+..+.           
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999999877         557788889999999999999  99999987  899999999876544332           


Q ss_pred             --cCCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC----cEE
Q 008058          197 --GHPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG----LYV  267 (579)
Q Consensus       197 --~h~~~v~~l~~~~~---~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l  267 (579)
                        +|...+.++.|+|+   +.++++++ .|+.+.+|+...++..   ....+..+...+.++.|+     |++    .+|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~h~~~i~~~~~~-----p~~~~~~~~l  233 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLH---VAAKLPGHKSLIRSISWA-----PSIGRWYQLI  233 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEE---EEEECCCCCSCEEEEEEC-----CCSSCSSEEE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCcee---eeeecCCCCcceeEEEEC-----CCCCCcceEE
Confidence              68889999999997   88999887 6999988887766532   345566666778888888     887    899


Q ss_pred             EEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec
Q 008058          268 LAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV  347 (579)
Q Consensus       268 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  347 (579)
                      ++++.||.|++||+.++................. .+....    ....+..++.    .......+..........+.+
T Consensus       234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  304 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD-NSADVD----MDAQGRSDSN----TEEKAELQSNLQVELLSEHDD  304 (351)
T ss_dssp             EEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEEEECT
T ss_pred             EEEcCCCeEEEEeCCCCcCccccCCcccceeccC-CCcccc----cccccccccc----cceeeeecccccccEEEEEec
Confidence            9999999999999987644332221111111000 011111    1112211110    000111111122245556778


Q ss_pred             CCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          348 NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       348 h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      |...|.+++|+|||.+| ++++.|+.+++|++.
T Consensus       305 h~~~v~~~~~s~~~~~l-~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          305 HNGEVWSVSWNLTGTIL-SSAGDDGKVRLWKAT  336 (351)
T ss_dssp             TSSCEEEEEECSSSCCE-EEEETTSCEEEEEEC
T ss_pred             ccccEEEEEEcCCCCEE-EEecCCCcEEEEecC
Confidence            99999999999999999 999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-31  Score=287.88  Aligned_cols=251  Identities=16%  Similarity=0.199  Sum_probs=204.9

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++|+|+|++|++|+.||+|+|||+.  ++.....+.+|...+.                  ++.|.+..  
T Consensus         8 H~~~V--~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~------------------~l~~s~~~--   65 (753)
T 3jro_A            8 HNELI--HDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW------------------RVDWAHPK--   65 (753)
T ss_dssp             CCCCE--EEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE------------------EEEECCTT--
T ss_pred             Cccee--EEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE------------------EEEecCCC--
Confidence            46788  555999999999999999999999998  4566667766655444                  45554321  


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eee
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLG  153 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~  153 (579)
                           ++.++++|+.||.|++||+.+++  .+..+ .+|...|++++|+|+  ++.+++|+.||.|++||+.++.  ...
T Consensus        66 -----~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~  139 (753)
T 3jro_A           66 -----FGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI  139 (753)
T ss_dssp             -----SCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE
T ss_pred             -----CCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee
Confidence                 16789999999999999999987  44343 679999999999999  9999999999999999998773  445


Q ss_pred             EeecCCCCeeEEEEcc-------------CCCEEEEEC--CeEEEEECCCC----eeeEEeecCCCCEEEEEEecC---C
Q 008058          154 KFRASTKGISCMAVSS-------------DGKMLATAA--GQLKTFNCSDH----KKMQKFSGHPGAVRFMTFSDN---G  211 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p-------------~g~~l~~~~--g~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~---~  211 (579)
                      .+.+|...|.+++|+|             +++++++|+  |.|++||++++    .....+.+|..+|++++|+|+   +
T Consensus       140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  219 (753)
T 3jro_A          140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  219 (753)
T ss_dssp             EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC
Confidence            6778999999999999             588899887  89999999876    566788899999999999999   8


Q ss_pred             CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      +++++++ .||.|++||+..+.............+...+..+.|+     |+|.+|++++.||.|++|++.++..
T Consensus       220 ~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----pdg~~l~s~s~Dg~I~vwd~~~~~~  288 (753)
T 3jro_A          220 SYLASVS-QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-----LSGNVLALSGGDNKVTLWKENLEGK  288 (753)
T ss_dssp             EEEEEEE-SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-----TTTCCEEEECSSSCEECCBCCSSSC
T ss_pred             CEEEEEe-cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc-----CCCCEEEEEcCCCEEEEEecCCCCC
Confidence            8999988 7999999999987532111222333455567778887     9999999999999999999986543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=1.6e-29  Score=262.29  Aligned_cols=243  Identities=15%  Similarity=0.220  Sum_probs=204.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++ +|++|+.||+|++||+.++++...+.+|...+.                  ++.|.+..    
T Consensus       161 h~~~V--~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~~~~----  215 (464)
T 3v7d_B          161 HDGGV--WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR------------------CLDIVEYK----  215 (464)
T ss_dssp             CSSCE--EEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEEESS----
T ss_pred             CCcCE--EEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccE------------------EEEEecCC----
Confidence            45778  566999998 999999999999999999999988876655444                  45554321    


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEE----------------------EEecCCCCCCEEEEEEccCCCEEEEEeCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLK----------------------WRLSDCHPGGVSAISFATHGSCIYSAGADG  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~----------------------~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg  139 (579)
                         ++.++++|+.||.|++||+.++...                      .....+|...|.++  +++++++++++.||
T Consensus       216 ---~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~  290 (464)
T 3v7d_B          216 ---NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN  290 (464)
T ss_dssp             ---SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS
T ss_pred             ---CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC
Confidence               1678999999999999999876532                      23346788889887  56889999999999


Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      .|++||+.+++.+..+.+|...|.+++|+|+++++++|+  |.|++||+++++.+.++.+|...|.++.|+  +.+++++
T Consensus       291 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred             eEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence            999999999999999999999999999999999999998  899999999999999999999999999997  5789988


Q ss_pred             ecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      + .||.|++||+.+....     ... ++.......+++     +++.++++++ ||.|++||+++++.+..
T Consensus       369 s-~dg~v~vwd~~~~~~~-----~~~-~~~~~~~~~~~~-----~~~~~l~~~~-dg~i~iwd~~~g~~~~~  427 (464)
T 3v7d_B          369 A-ADGSIRGWDANDYSRK-----FSY-HHTNLSAITTFY-----VSDNILVSGS-ENQFNIYNLRSGKLVHA  427 (464)
T ss_dssp             E-TTSEEEEEETTTCCEE-----EEE-ECTTCCCEEEEE-----ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred             e-CCCcEEEEECCCCcee-----eee-cCCCCccEEEEE-----eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence            8 7999999999986532     333 334445566676     8999999988 89999999999998865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.3e-31  Score=273.68  Aligned_cols=253  Identities=8%  Similarity=0.086  Sum_probs=190.8

Q ss_pred             CcccceEEEEccC------CCEEEEEeCCCcEEEEECCCCeEEE--EeccccccccccccccccccccccCccceEEeee
Q 008058            4 SNIRDILTSFSPA------LDYFAICSGDARIKIWDTLKGQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         4 ~~V~~~~~~fs~d------g~~las~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ++|  ..++|+|+      +.+||+|+.||+|+|||+.++....  .+. ...+.  ..     ..+| ...+++++|.+
T Consensus       208 ~~V--~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~--~~-----l~~h-~~~v~sv~~s~  276 (524)
T 2j04_B          208 GEV--WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPS--LT-----LSLA-DSLITTFDFLS  276 (524)
T ss_dssp             CSE--EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCS--EE-----ECCT-TTCEEEEEESS
T ss_pred             CcE--EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCce--EE-----EEcC-CCCEEEEEecC
Confidence            567  45599997      5799999999999999998664210  000 00000  00     1123 24577888875


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEE--EEccCC-CEEEEEeCCCcEEEEeCCCCcee
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAI--SFATHG-SCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l--~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~  152 (579)
                                +..|++|+.||.|++||+.++........+|...|+++  .|+|+| ++|++|+.|++|++||++++++.
T Consensus       277 ----------~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~  346 (524)
T 2j04_B          277 ----------PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT  346 (524)
T ss_dssp             ----------SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred             ----------CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence                      34699999999999999998754333346899999999  578887 89999999999999999998888


Q ss_pred             eEeecCCC--CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          153 GKFRASTK--GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       153 ~~~~~~~~--~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      .++.+|..  .|.+++|+|+++.+++++  ++|++||++++.++.++.+|.+.|++++|+|++++|++++ .|++|++||
T Consensus       347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv~lwd  425 (524)
T 2j04_B          347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSLIITN  425 (524)
T ss_dssp             CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEEECCB
T ss_pred             cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEEEEEe
Confidence            77777654  588999999999999887  7999999999998889999999999999999999999988 799999999


Q ss_pred             cCCCcccc---------------------------------------ceeEEeeecCceeeEeEEecCCcccCCC---cE
Q 008058          229 TDGVKKQS---------------------------------------ASCVLAMEHPAVFMDCRCIDNGGVDDAG---LY  266 (579)
Q Consensus       229 ~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  266 (579)
                      +.......                                       ..+...+..+...+.+++|+     |++   ..
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs-----p~~~~~~~  500 (524)
T 2j04_B          426 AARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN-----ETSAGGKC  500 (524)
T ss_dssp             SCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEEC-----CSTTTTTE
T ss_pred             chHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECC-----CCCCccHH
Confidence            75431110                                       00111122233445667777     774   59


Q ss_pred             EEEEEcCCeEEEEECCC
Q 008058          267 VLAISETGVCYIWYGQN  283 (579)
Q Consensus       267 l~s~~~dg~i~iwd~~~  283 (579)
                      +++|+.||.|+||+++-
T Consensus       501 lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          501 YAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEECTTSEEEEEECSC
T ss_pred             HHhhccCceEEEEEccc
Confidence            99999999999999754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.3e-31  Score=271.98  Aligned_cols=297  Identities=12%  Similarity=0.094  Sum_probs=221.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEe-ccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEF-ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|...+.                  +++|.+.+        +.+|+
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~------------------~~~~s~~~--------~~~l~   80 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSIT------------------SSAVSPGE--------TPYLI   80 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEE------------------EEEEECSS--------SCEEE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceE------------------EEEECCCC--------CCEEE
Confidence            5788998888765      488 457888877 66555555                  44444411        78899


Q ss_pred             EEECCCeEEEEEccC---CeEEE-EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEeec------
Q 008058           91 LGTGGGDVLALAVSA---GQLKW-RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFRA------  157 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~---~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~------  157 (579)
                      +|+.||.|++||+.+   +.... ....+|...|++++|+|++++|++++.||+|++||+.   +++....+..      
T Consensus        81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~  160 (437)
T 3gre_A           81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI  160 (437)
T ss_dssp             EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence            999999999999987   43211 1112589999999999999999999999999999994   5555444332      


Q ss_pred             ------CCCCeeEEE--EccCCCEEEEEC--CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          158 ------STKGISCMA--VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       158 ------~~~~v~~l~--~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                            +...+.++.  ++|++.++++++  |.|++||+++++.+..+.+  |...|++++|+|++++|++++ .|+.|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~dg~i~  239 (437)
T 3gre_A          161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT-TRGIID  239 (437)
T ss_dssp             EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE-TTSCEE
T ss_pred             EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc-CCCeEE
Confidence                  344666666  567899999998  8999999999999999988  899999999999999999998 799999


Q ss_pred             EEEcCCCccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCc
Q 008058          226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  304 (579)
                      +||++.++..     ..+. .+...+..+.+.+ .++|++.+|++++.||.|++||+.+++.+.........+.... ++
T Consensus       240 iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~  312 (437)
T 3gre_A          240 IWDIRFNVLI-----RSWSFGDHAPITHVEVCQ-FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FL  312 (437)
T ss_dssp             EEETTTTEEE-----EEEBCTTCEEEEEEEECT-TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGG-GS
T ss_pred             EEEcCCccEE-----EEEecCCCCceEEEEecc-ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccce-ec
Confidence            9999986533     3332 3334566665542 1237889999999999999999999887765543322222111 23


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEec--CCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILV--NSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      ++++    .+...                          .+.+  |...|.+++|+ ++.+| ++++.|+.+++|++.+
T Consensus       313 ~~~~----~l~~~--------------------------~~~~~~~~~~v~~l~~~-~~~~l-~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          313 PIEK----GLEEL--------------------------NFCGIRSLNALSTISVS-NDKIL-LTDEATSSIVMFSLNE  359 (437)
T ss_dssp             CBCS----SGGGC--------------------------CCCCCCSGGGGCCEEEE-TTEEE-EEEGGGTEEEEEETTC
T ss_pred             cccc----ccccc--------------------------eecccccCCceEEEEEC-CceEE-EecCCCCeEEEEECCC
Confidence            3322    11000                          1234  88899999999 88999 9999999999999853

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=257.49  Aligned_cols=250  Identities=11%  Similarity=0.143  Sum_probs=198.8

Q ss_pred             CCcccceEEEEccC---CCEEEEEeCCCcEEEEECCCCe-EEEEeccccccccccccccccccccccCccceEEeee---
Q 008058            3 SSNIRDILTSFSPA---LDYFAICSGDARIKIWDTLKGQ-VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS---   75 (579)
Q Consensus         3 ~~~V~~~~~~fs~d---g~~las~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~---   75 (579)
                      ..+|  .+++|+|+   |++|++|+.||.|++||+.+++ ....+..|...+.                  ++.|.+   
T Consensus        65 ~~~v--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~------------------~~~~~~~~~  124 (357)
T 3i2n_A           65 AKPI--KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN------------------AIDGIGGLG  124 (357)
T ss_dssp             SSCE--EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE------------------EEEEESGGG
T ss_pred             cCcE--EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE------------------EEeeccccc
Confidence            4578  56699999   7999999999999999999887 7777776655444                  444432   


Q ss_pred             cccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEecCCCC----CCEEEEE----EccCCCEEEEEeCCCcEEEEeC
Q 008058           76 VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLSDCHP----GGVSAIS----FATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~~~h~----~~V~~l~----~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                      .+++      +..+++++.||.|++||+.+++ .+..+ ..|.    ..|.++.    |+|+++++++++.||.|++||+
T Consensus       125 ~s~~------~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~  197 (357)
T 3i2n_A          125 IGEG------APEIVTGSRDGTVKVWDPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL  197 (357)
T ss_dssp             CC-C------CCEEEEEETTSCEEEECTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred             cCCC------ccEEEEEeCCCeEEEEeCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence            1222      7789999999999999999887 44444 3333    3899998    7889999999999999999999


Q ss_pred             CCCceeeEeecCCCCeeEEEEcc---CCCEEEEEC--CeEEEEECCCCeeeEEee-----cCCCCEEEEEEecCCC-EEE
Q 008058          147 LTGSLLGKFRASTKGISCMAVSS---DGKMLATAA--GQLKTFNCSDHKKMQKFS-----GHPGAVRFMTFSDNGK-YVL  215 (579)
Q Consensus       147 ~~~~~~~~~~~~~~~v~~l~~~p---~g~~l~~~~--g~i~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~~-~l~  215 (579)
                      ++++.... ..|...|.+++|+|   ++.++++++  |.|++||+++++.+..+.     +|...|++++|+|+++ +++
T Consensus       198 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  276 (357)
T 3i2n_A          198 RNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL  276 (357)
T ss_dssp             TTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred             ccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence            98887544 55888999999999   899999988  899999999877655554     8999999999999998 677


Q ss_pred             EEecCCCeEEEEEcCCCcccc--------------ceeEEeeecCceeeEeEEecCCcccCCCcEEE-EEEcCCeEEEEE
Q 008058          216 SSAVGERYIALWRTDGVKKQS--------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL-AISETGVCYIWY  280 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~dg~i~iwd  280 (579)
                      +++ .|+.|++||++.+....              ...+..+..+...+..+.|+     |++.+|+ +++.||.|++||
T Consensus       277 ~~~-~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          277 TAG-GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS-----PDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             EEE-TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEE
T ss_pred             EEe-CCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc-----CCCCeEEEEecCCCcEEEEE
Confidence            776 79999999998654321              12455566667778888888     9999998 799999999999


Q ss_pred             CCCcee
Q 008058          281 GQNIEE  286 (579)
Q Consensus       281 ~~~~~~  286 (579)
                      +.+.+.
T Consensus       351 ~~~~~~  356 (357)
T 3i2n_A          351 VTKLNK  356 (357)
T ss_dssp             ECC---
T ss_pred             CCCccc
Confidence            987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-29  Score=260.99  Aligned_cols=256  Identities=14%  Similarity=0.043  Sum_probs=196.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccc----------cc------------
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYG----------NR------------   58 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~----------~~------------   58 (579)
                      .|+.  +++|+|||++|++++ ++.|++||+.+|+   .+..+..+........+.          ..            
T Consensus         5 ~p~~--~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (450)
T 2vdu_B            5 HPLQ--NLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG   81 (450)
T ss_dssp             CCCC--EEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred             ccEE--EEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence            5784  449999999776664 7899999999998   776666443210000000          00            


Q ss_pred             ----------cccc----cccCccceEEeeecccccccccCCcEE-EEEECCCeEEEEEcc--CCeEEEEec-CCCCCCE
Q 008058           59 ----------LERE----HLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVLALAVS--AGQLKWRLS-DCHPGGV  120 (579)
Q Consensus        59 ----------~~~~----~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~i~iwd~~--~~~~~~~~~-~~h~~~V  120 (579)
                                ...+    .....+.+++|.+.         +.+| ++|+.||.|++||+.  +++.+..+. ..|...|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v  152 (450)
T 2vdu_B           82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD---------ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP  152 (450)
T ss_dssp             ------------------CCCCCEEEEEECTT---------SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred             ccccccCccccCCCCCCCccCCceEEEEEcCC---------CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence                      0000    01225778888775         5564 888899999999999  777765553 2577899


Q ss_pred             EEEEEccCCCEEEEEeCCCcEEEEeCCCCceee----EeecCCCCeeEEEEccC---CCEEEEEC--CeEEEEECCCCee
Q 008058          121 SAISFATHGSCIYSAGADGMVCEIDPLTGSLLG----KFRASTKGISCMAVSSD---GKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       121 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~v~~l~~~p~---g~~l~~~~--g~i~vwd~~~~~~  191 (579)
                      ++++|+|++++|++++.||.|++|++.+++...    .+.+|...|++++|+|+   +++|++|+  +.|++||+++++.
T Consensus       153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~  232 (450)
T 2vdu_B          153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI  232 (450)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence            999999999999999999999999998877554    78889999999999999   99999998  8999999999988


Q ss_pred             eEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-----------------------cCc
Q 008058          192 MQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-----------------------HPA  247 (579)
Q Consensus       192 ~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~  247 (579)
                      +.. +.+|...|.+++|+ ++++|++++ .|+.|++||+.+++..   ..+...                       ...
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNL---STFDYNSLIKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEE---EEEECHHHHGGGCCTTSBC----------CBC
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEe---eeecchhhhhhhhhhcccccccccccccccce
Confidence            877 56899999999999 999999998 7999999999988643   111111                       112


Q ss_pred             eeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEEC
Q 008058          248 VFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG  281 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~  281 (579)
                      ..+..+.+.     |++.+|++++ .|+.|++|++
T Consensus       308 ~~v~~i~~~-----~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKS-----KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEEC-----SSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEe-----CCCCEEEEEECCCCeEEEEEe
Confidence            345666776     8999999999 8999999997

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=251.75  Aligned_cols=235  Identities=14%  Similarity=0.080  Sum_probs=184.5

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ..+.+++.+|++|+.||+|++||+.+++.+..+.  ...+..+.+++                             . ++
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-----------------------------~-~~   89 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-----------------------------A-II   89 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-----------------------------S-EE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-----------------------------c-eE
Confidence            3456788999999999999999999998887765  22222222221                             2 78


Q ss_pred             EEECCCeEEEEEcc---------CCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCceeeEeec-C
Q 008058           91 LGTGGGDVLALAVS---------AGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-S  158 (579)
Q Consensus        91 ~~~~~g~i~iwd~~---------~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~  158 (579)
                      +++.|+.|++|+..         +++.+.....+|.++|.+++|+|  +++++++++.||+|++||+++++.+..+.. +
T Consensus        90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  169 (343)
T 3lrv_A           90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS  169 (343)
T ss_dssp             EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS
T ss_pred             EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC
Confidence            88888888888654         56655555567888999999999  999999999999999999999988776644 4


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee-EEeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM-QKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~-~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ...+.+++|+|+|.++++|+  |.|++||+++++.+ ..+.+ |.++|++++|+|++.+|++++  |+.|++||++..+.
T Consensus       170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~  247 (343)
T 3lrv_A          170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVG  247 (343)
T ss_dssp             SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCc
Confidence            45899999999999999988  99999999999887 78888 999999999999999999987  44999999998764


Q ss_pred             ccceeEEeeecCceee--EeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCcee
Q 008058          235 QSASCVLAMEHPAVFM--DCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEE  286 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~  286 (579)
                      ..  .+..+..+...+  .+++|+     |+|++|++++. |+.+++|++.....
T Consensus       248 ~~--~~~~~~~~~~~~~~~~~~~~-----~~g~~l~~~s~~d~~i~v~~~~~~~~  295 (343)
T 3lrv_A          248 TL--AYPTYTIPEFKTGTVTYDID-----DSGKNMIAYSNESNSLTIYKFDKKTK  295 (343)
T ss_dssp             CB--SSCCCBC-----CCEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             ce--eecccccccccccceEEEEC-----CCCCEEEEecCCCCcEEEEEEccccc
Confidence            31  111111111222  357787     99999999998 99999999866543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-29  Score=254.17  Aligned_cols=236  Identities=14%  Similarity=0.158  Sum_probs=194.9

Q ss_pred             CcEEEEEECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.+|++|+.||.|++||+.  +++.+..+ .+|...|++++|+|+  +++|++++.||.|++||+.+++  .+..+..|.
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  101 (379)
T 3jrp_A           23 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS  101 (379)
T ss_dssp             SSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence            7889999999999999998  44455444 689999999999977  9999999999999999999887  777788899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCCe--eeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008058          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~-------------~~~~l~s~s~~  220 (579)
                      ..|.+++|+|+  ++++++++  +.|++||++++.  ....+.+|...|.+++|+|             ++.++++++ .
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~  180 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  180 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-T
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-C
Confidence            99999999999  99999988  899999999873  3456778999999999999             689999988 7


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      |+.|++||++.+... ......+..+...+.++.|+     |+   +.+|++++.||.|++||+.++.....     ...
T Consensus       181 dg~i~i~d~~~~~~~-~~~~~~~~~h~~~v~~~~~s-----p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~  249 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK-----KTL  249 (379)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEETTSCEEEEEESSTTSCCE-----EEE
T ss_pred             CCeEEEEEecCCCcc-eeeEEEEecccCcEeEEEEC-----CCCCCCCeEEEEeCCCEEEEEeCCCCCccce-----eee
Confidence            999999999876533 22344555666777888888     88   89999999999999999876532100     000


Q ss_pred             eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                      .                                             ....|...+.+++|+|||.+| ++++.|+.+++|
T Consensus       250 ~---------------------------------------------~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~i~iw  283 (379)
T 3jrp_A          250 L---------------------------------------------KEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  283 (379)
T ss_dssp             S---------------------------------------------SSSCCSSCEEEEEECSSSCCE-EEEESSSSEEEE
T ss_pred             e---------------------------------------------ccccCCCcEEEEEEcCCCCEE-EEecCCCcEEEE
Confidence            0                                             011366689999999999999 999999999999


Q ss_pred             eee
Q 008058          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       284 ~~~  286 (379)
T 3jrp_A          284 KEN  286 (379)
T ss_dssp             EEE
T ss_pred             eCC
Confidence            985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=8.2e-29  Score=253.48  Aligned_cols=243  Identities=16%  Similarity=0.268  Sum_probs=202.3

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|||++||+|+.||+|+|||+.+++++..+.+|...+                  .++.|.         
T Consensus       148 ~~V--~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v------------------~~~s~~---------  198 (420)
T 4gga_A          148 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV------------------GSLSWN---------  198 (420)
T ss_dssp             CCE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE------------------EEEEEE---------
T ss_pred             CcE--EEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce------------------EEEeeC---------
Confidence            457  566999999999999999999999999999999887665433                  234442         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc----eeeEeecCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS----LLGKFRAST  159 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~  159 (579)
                        +..+++|+.++.+++||............+|...+..+.|+|+++++++++.|+.+++||..+++    .+.....|.
T Consensus       199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          199 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             --CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence              67899999999999999988665545557899999999999999999999999999999998765    355677788


Q ss_pred             CCeeEEEEccCCC-EEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008058          160 KGISCMAVSSDGK-MLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~-~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~  233 (579)
                      ..|.+++|+|++. ++++++    +.|++||+.+++++..+..| ..+.++.|+|+++.+++++ ..|+.|++||+.+++
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence            9999999999665 555442    79999999999999888755 5788999999999888764 358999999999876


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                           ++..+..|...+.+++|+     |+|.+|++|+.||+|+|||+......+
T Consensus       356 -----~v~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          356 -----KVAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             -----EEEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred             -----EEEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCCccc
Confidence                 345666667778888898     999999999999999999987665443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.4e-29  Score=248.50  Aligned_cols=242  Identities=14%  Similarity=0.153  Sum_probs=205.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|++++|++++.||.|++||+.++++...+. +...                  +.++.|.+.      
T Consensus        74 ~~~v--~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~------------------v~~~~~~~~------  126 (369)
T 3zwl_B           74 TGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP------------------VKRVEFSPC------  126 (369)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC------------------EEEEEECTT------
T ss_pred             CCcE--EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC------------------eEEEEEccC------
Confidence            5678  566999999999999999999999999999888776 3333                  345555443      


Q ss_pred             ccCCcEEEEEECC-----CeEEEEEccCCeE-----------EEEecCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEE
Q 008058           83 KLGSSLLVLGTGG-----GDVLALAVSAGQL-----------KWRLSDCHPG--GVSAISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~-----------~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~dg~v~iw  144 (579)
                         +..+++++.+     |.|.+||+..+..           ...+ ..|..  .+.+++|+|+++++++++.||.|++|
T Consensus       127 ---~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~  202 (369)
T 3zwl_B          127 ---GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY  202 (369)
T ss_dssp             ---SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             ---CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence               7889999998     9999999986532           1111 24555  89999999999999999999999999


Q ss_pred             eCCC-CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          145 DPLT-GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       145 d~~~-~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      |+.+ ++.+..+..|...|.+++|+|++++|++++  |.|++||+++++.+..+. +...+..+.|+|+++++++++ .+
T Consensus       203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~  280 (369)
T 3zwl_B          203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGG-GQ  280 (369)
T ss_dssp             ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CC
T ss_pred             ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEee-cC
Confidence            9998 788888999999999999999999999987  899999999999988887 788999999999999999988 56


Q ss_pred             C--------------eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          222 R--------------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       222 ~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      +              .+++||...++..     ..+..+...+..+.|+     |++++|++++.||.|++|+++++...
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEEEI-----GRVQGHFGPLNTVAIS-----PQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             C-------------CEEEEEETTTCCEE-----EEEECCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             CCceEEEEecCCCcceeEEEecCCCcch-----hheecccCcEEEEEEC-----CCCCEEEEEcCCCeEEEEECccccch
Confidence            6              8999999887633     4555566677888888     99999999999999999999876544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.9e-30  Score=260.20  Aligned_cols=196  Identities=11%  Similarity=0.157  Sum_probs=153.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe---EEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ---VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .+++|+|+|++|++|+.||+|+|||+.++.   ....+..|...+.                  ++.|.+.   
T Consensus        55 ~~~v--~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~---  111 (377)
T 3dwl_C           55 DKIV--TCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT------------------FVRWSPN---  111 (377)
T ss_dssp             SSCE--EEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE------------------EEECCTT---
T ss_pred             CceE--EEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE------------------EEEECCC---
Confidence            5678  566999999999999999999999999877   4555555554444                  4555442   


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---------
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---------  147 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---------  147 (579)
                            +..|++++.||.|++||+.+++.   ...+...|...|++++|+|++++|++++.|+.|++||+.         
T Consensus       112 ------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  185 (377)
T 3dwl_C          112 ------EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE  185 (377)
T ss_dssp             ------SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred             ------CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence                  77899999999999999998873   445544499999999999999999999999999999985         


Q ss_pred             ---------CCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCC
Q 008058          148 ---------TGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       148 ---------~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~  212 (579)
                               .++.+..+ +|...|.+++|+|+|++|++++  |.|++||+++++.    +..+.+|..+|.+++|+|+++
T Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          186 ASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA  264 (377)
T ss_dssp             SCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE
T ss_pred             ccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC
Confidence                     34566667 8899999999999999999988  8999999999887    788899999999999999999


Q ss_pred             EEEEEecCCCeEEEEEcC
Q 008058          213 YVLSSAVGERYIALWRTD  230 (579)
Q Consensus       213 ~l~s~s~~d~~i~vwd~~  230 (579)
                      +|++++ .|+ +.+|+..
T Consensus       265 ~l~~~~-~~~-~~~~~~~  280 (377)
T 3dwl_C          265 IVAAGY-NYS-PILLQGN  280 (377)
T ss_dssp             EEEEES-SSS-EEEECCC
T ss_pred             EEEEEc-CCc-EEEEEeC
Confidence            888775 455 5577765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.4e-29  Score=253.01  Aligned_cols=240  Identities=16%  Similarity=0.179  Sum_probs=188.4

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++++.||.|++||+.+ .....+..+..               ....+.+++|.+.    
T Consensus       117 h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~---------------~~~~v~~~~~~~~----  174 (383)
T 3ei3_B          117 PGDAI--TGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDS---------------WDYWYCCVDVSVS----  174 (383)
T ss_dssp             TTCBE--EEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCC---------------SSCCEEEEEEETT----
T ss_pred             cCCce--eEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCC---------------CCCCeEEEEECCC----
Confidence            34678  5669999 789999999999999999985 44554543221               1234567777654    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCC----CceeeEe
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLT----GSLLGKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~----~~~~~~~  155 (579)
                           +.++++|+.+|.|++||+ +++.+..+ .+|...|.+++|+|+++ ++++++.|+.|++||+++    +..+..+
T Consensus       175 -----~~~l~~~~~d~~i~i~d~-~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          175 -----RQMLATGDSTGRLLLLGL-DGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             -----TTEEEEEETTSEEEEEET-TSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred             -----CCEEEEECCCCCEEEEEC-CCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence                 788999999999999999 46666555 57999999999999999 899999999999999987    5666666


Q ss_pred             ecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----------------CCEEEEEEecCCCEEE
Q 008058          156 RASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----------------GAVRFMTFSDNGKYVL  215 (579)
Q Consensus       156 ~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----------------~~v~~l~~~~~~~~l~  215 (579)
                       +|...|.+++|+| ++++|++++  +.|++||+++++....+.+|.                 ..+..++|+|++++  
T Consensus       248 -~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--  324 (383)
T 3ei3_B          248 -PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--  324 (383)
T ss_dssp             -ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--
T ss_pred             -cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--
Confidence             5899999999999 999999988  899999999988877776553                 23444666666665  


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      +++ .|+.|++||+.+++..   ..+...++...+.++.|+     |++.+|++++ ||.|++||+++
T Consensus       325 s~s-~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s-----~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          325 LLN-DKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFS-----PTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CTT-CCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEEC-----TTSSEEEEEE-TTEEEEEECC-
T ss_pred             ccC-CCCeEEEEecCCCcee---eeecCCCCCceEEEEEEe-----cCccEEEEec-CCcEEEEecCC
Confidence            444 7999999999987643   222222345667777888     9999999997 99999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.8e-28  Score=243.47  Aligned_cols=291  Identities=9%  Similarity=-0.009  Sum_probs=206.7

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|||++||+|+.|| ++|||..++........+                    ....+.|.+..     
T Consensus        19 ~~~V--~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--------------------~~~~~~~~~~~-----   70 (355)
T 3vu4_A           19 SNPV--TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--------------------HLSKVRMLHRT-----   70 (355)
T ss_dssp             CCCC--CEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--------------------CCCEEEECTTS-----
T ss_pred             CCce--EEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--------------------CeEEEEEcCCC-----
Confidence            4678  5569999999999998775 789999887765543211                    12334444321     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRASTKG  161 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~  161 (579)
                         +.++++++.++.|++||..+++.+..+.  |...|.++.|+++.  ++.+ .|+.|++||+.++ +.+..+..   +
T Consensus        71 ---~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~  139 (355)
T 3vu4_A           71 ---NYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---F  139 (355)
T ss_dssp             ---SEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---E
T ss_pred             ---CEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---C
Confidence               3334667788999999999999887763  67799999998764  4444 4889999999988 77777665   4


Q ss_pred             eeEEEEccCCCEEEEE--C--CeEEEEECCCCe----------------eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          162 ISCMAVSSDGKMLATA--A--GQLKTFNCSDHK----------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~--~--g~i~vwd~~~~~----------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      ...+++++  .+++++  +  |.|++||+++++                .+..+.+|.++|++++|+|+|++|++++ .|
T Consensus       140 ~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s-~d  216 (355)
T 3vu4_A          140 GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS-QD  216 (355)
T ss_dssp             EEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred             CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe-CC
Confidence            45566777  566664  4  899999999865                2778899999999999999999999998 79


Q ss_pred             Ce-EEEEEcCCCccccceeEEeee-c-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc--cCCceEE
Q 008058          222 RY-IALWRTDGVKKQSASCVLAME-H-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN--TKATKIL  296 (579)
Q Consensus       222 ~~-i~vwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~  296 (579)
                      ++ |++||+++++..     ..+. . +...+..+.|+     |+|++|++++.||+|++||++.......  ....   
T Consensus       217 ~~~v~iwd~~~~~~~-----~~~~~g~h~~~v~~~~~s-----~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~---  283 (355)
T 3vu4_A          217 GTIIRVFKTEDGVLV-----REFRRGLDRADVVDMKWS-----TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW---  283 (355)
T ss_dssp             CSEEEEEETTTCCEE-----EEEECTTCCSCEEEEEEC-----TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT---
T ss_pred             CCEEEEEECCCCcEE-----EEEEcCCCCCcEEEEEEC-----CCCCEEEEEECCCEEEEEEccCCCCcccccccce---
Confidence            98 999999987643     4454 2 55677888888     9999999999999999999976532111  0000   


Q ss_pred             eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccc
Q 008058          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRG  376 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~  376 (579)
                      .      .+           ..++. .  +.           ...+.-...+......++|++||.++ ++++.|+.+++
T Consensus       284 ~------~~-----------~~~~~-~--~~-----------~~~~~~~~~~~~~~~~~a~~~d~~~l-~~~~~dg~~~~  331 (355)
T 3vu4_A          284 I------NM-----------KYFQS-E--WS-----------LCNFKLSVDKHVRGCKIAWISESSLV-VVWPHTRMIET  331 (355)
T ss_dssp             E------EC-----------CCCCC-S--SC-----------SEEEECCCCTTCCCCEEEESSSSEEE-EEETTTTEEEE
T ss_pred             e------ec-----------ccccc-c--cc-----------eeEEEeccCCCCCceEEEEeCCCCEE-EEEeCCCeEEE
Confidence            0      00           00000 0  00           00000001122245779999999999 88888999999


Q ss_pred             eeee
Q 008058          377 RYVQ  380 (579)
Q Consensus       377 w~~~  380 (579)
                      |++.
T Consensus       332 ~~~~  335 (355)
T 3vu4_A          332 FKVV  335 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=2.8e-28  Score=251.62  Aligned_cols=262  Identities=16%  Similarity=0.252  Sum_probs=212.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+  ++++++|+.||+|++||+.+++....+.+|...+.                  ++.|.       
T Consensus       158 h~~~v--~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~~~~~-------  208 (445)
T 2ovr_B          158 HTGGV--WSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR------------------CMHLH-------  208 (445)
T ss_dssp             CSSCE--EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE------------------EEEEE-------
T ss_pred             CCCCE--EEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE------------------EEEec-------
Confidence            34677  555886  67999999999999999999999988876654433                  44442       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++|+.||.|++||+.+++.+..+ .+|...|.++.|  +++++++++.||.|++||+.+++.+..+.+|...
T Consensus       209 ----~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  281 (445)
T 2ovr_B          209 ----EKRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR  281 (445)
T ss_dssp             ----TTEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC
T ss_pred             ----CCEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc
Confidence                567999999999999999999988666 579999999999  7889999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      |.+++|  ++.++++++  |.|++||+++++.+..+.+|...+.++.++  ++++++++ .||.|++||+++++..    
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~----  352 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCL----  352 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE----
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEE----
Confidence            999999  788899887  899999999999999999999999988875  56888887 7999999999887633    


Q ss_pred             EEeeec---CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc-----CCceEEeeecccCcccccccc
Q 008058          240 VLAMEH---PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT-----KATKILSSSEDVNSKSQKSAT  311 (579)
Q Consensus       240 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  311 (579)
                       ..+..   +...+.++.+       ++.+|++++.||.|++||+.+++.+...     .+....+.+.. +++++.   
T Consensus       353 -~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~---  420 (445)
T 2ovr_B          353 -QTLQGPNKHQSAVTCLQF-------NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR-ASNTKL---  420 (445)
T ss_dssp             -EEECSTTSCSSCEEEEEE-------CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE-ECSSEE---
T ss_pred             -EEEccCCCCCCCEEEEEE-------CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE-ecCCEE---
Confidence             33332   4445566666       4589999999999999999999877655     12222333222 456655   


Q ss_pred             hhhhhccccc
Q 008058          312 AAIFAAKLQD  321 (579)
Q Consensus       312 ~~i~~~~~~~  321 (579)
                       .+++++.||
T Consensus       421 -~la~~~~dg  429 (445)
T 2ovr_B          421 -VCAVGSRNG  429 (445)
T ss_dssp             -EEEEECSSS
T ss_pred             -EEEEcccCC
Confidence             677777765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=3.9e-29  Score=256.65  Aligned_cols=248  Identities=13%  Similarity=0.193  Sum_probs=197.5

Q ss_pred             CCcccceEEEEccC-CCEEEEEeCCCcEEEEECCC----------CeEEEEeccccccccccccccccccccccCccceE
Q 008058            3 SSNIRDILTSFSPA-LDYFAICSGDARIKIWDTLK----------GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM   71 (579)
Q Consensus         3 ~~~V~~~~~~fs~d-g~~las~s~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (579)
                      .++|  .+++|+|+ +.+||+++.||.|+||++.+          ......+..|..                  .+.++
T Consensus       128 ~~~v--~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l  187 (430)
T 2xyi_A          128 EGEV--NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK------------------EGYGL  187 (430)
T ss_dssp             SSCC--SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS------------------CCCCE
T ss_pred             CCcE--EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC------------------CeEEE
Confidence            4678  45599997 68999999999999999976          344444444433                  34566


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCCeE----E--EEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 008058           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQL----K--WRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEI  144 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~----~--~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iw  144 (579)
                      .|.+..        ..+|++|+.+|.|++||+.++..    +  .....+|...|.+++|+| ++..|++++.||.|++|
T Consensus       188 ~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~  259 (430)
T 2xyi_A          188 SWNPNL--------NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW  259 (430)
T ss_dssp             EECTTS--------TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred             EeCCCC--------CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEE
Confidence            666542        33899999999999999987322    1  123357999999999999 67889999999999999


Q ss_pred             eCCCC---ceeeEeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCC-EEEE
Q 008058          145 DPLTG---SLLGKFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGK-YVLS  216 (579)
Q Consensus       145 d~~~~---~~~~~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~-~l~s  216 (579)
                      |++++   +.+..+..|...|++++|+|+++ ++++|+  |.|++||+++ ++.+..+.+|...|.+++|+|+++ +|++
T Consensus       260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            99987   57778888999999999999987 577776  9999999998 567889999999999999999996 5666


Q ss_pred             EecCCCeEEEEEcCCCcccc---------ceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEcCCeEEEEECCCc
Q 008058          217 SAVGERYIALWRTDGVKKQS---------ASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~  284 (579)
                      ++ .|+.|++||+.......         ...+.....+...+..+.|+     |++. +|++++.||.|++|++...
T Consensus       340 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SG-TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN-----PNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EE-TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC-----SSSTTEEEEEETTSEEEEEEECHH
T ss_pred             Ee-CCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC-----CCCCCEEEEEECCCCEEEeEcccc
Confidence            66 79999999998732110         12445555566667788887     8888 8999999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-28  Score=237.81  Aligned_cols=237  Identities=13%  Similarity=0.209  Sum_probs=194.2

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|  .+++|+|++++|++|+.||.|++|++...   +....+..|..                  .+.++.|.     
T Consensus        59 ~~~v--~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~------------------~i~~~~~~-----  113 (313)
T 3odt_A           59 QGFL--NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQG------------------NVCSLSFQ-----  113 (313)
T ss_dssp             SSCE--EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSS------------------CEEEEEEE-----
T ss_pred             CccE--EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhccc------------------CEEEEEec-----
Confidence            4677  55699999999999999999999998654   33444443333                  34455551     


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-  157 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-  157 (579)
                            +..+++++.+|.|++||  .++....+ ..|...|.++.|+| +++++++++.||.|++||  .++....+.. 
T Consensus       114 ------~~~l~~~~~d~~i~~~d--~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~  182 (313)
T 3odt_A          114 ------DGVVISGSWDKTAKVWK--EGSLVYNL-QAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGI  182 (313)
T ss_dssp             ------TTEEEEEETTSEEEEEE--TTEEEEEE-ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSS
T ss_pred             ------CCEEEEEeCCCCEEEEc--CCcEEEec-ccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEecc
Confidence                  67899999999999999  55655455 57999999999998 999999999999999999  5667777777 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |...+.+++|+|++. +++++  |.|++||+++++.+..+.+|..+|++++|+|++ .+++++ .|+.|++||+.+++..
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCG-EDRTVRIWSKENGSLK  259 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEE-TTSEEEEECTTTCCEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEe-cCCEEEEEECCCCcee
Confidence            888999999999999 55555  899999999999999999999999999999999 577777 7999999999987633


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                           ..+..+...+..+.|+     |+++ +++++.||.|++||+++++.+..
T Consensus       260 -----~~~~~~~~~i~~~~~~-----~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          260 -----QVITLPAISIWSVDCM-----SNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             -----EEEECSSSCEEEEEEC-----TTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             -----EEEeccCceEEEEEEc-----cCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence                 4455566677788887     8888 66799999999999988876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=6.5e-29  Score=252.74  Aligned_cols=247  Identities=14%  Similarity=0.208  Sum_probs=199.0

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCC-------eEEEEeccccccccccccccccccccccCccceEEe
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKG-------QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +.++|  .+++|+| ++++|++|+.||+|+|||+.++       +....+.+|..                  .+.+++|
T Consensus        80 h~~~V--~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~  139 (402)
T 2aq5_A           80 HTAPV--LDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK------------------RVGIVAW  139 (402)
T ss_dssp             CSSCE--EEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS------------------CEEEEEE
T ss_pred             CCCCE--EEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC------------------eEEEEEE
Confidence            35678  5669999 9999999999999999999987       44555554444                  3455666


Q ss_pred             eecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 008058           74 LSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL  152 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~  152 (579)
                      .+..        ..++++++.||.|++||+.+++.+..+. .+|...|++++|+|++++|++++.||.|++||+++++.+
T Consensus       140 ~p~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          140 HPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             CSSB--------TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE
T ss_pred             CcCC--------CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee
Confidence            5542        3689999999999999999999887764 679999999999999999999999999999999999999


Q ss_pred             eEe-ecCCCC-eeEEEEccCCCEEEEE---C--CeEEEEECCCCee-eEEee-cCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          153 GKF-RASTKG-ISCMAVSSDGKMLATA---A--GQLKTFNCSDHKK-MQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       153 ~~~-~~~~~~-v~~l~~~p~g~~l~~~---~--g~i~vwd~~~~~~-~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                      ..+ ..|.+. +.+++|+|+++++++|   +  +.|++||+++++. +.... .|...+.+++|+|+++++++++..|+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            988 678775 8999999999999998   4  8999999998654 33332 577889999999999999877657999


Q ss_pred             EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      |++|++.+++.. ...+.... +...+..+.|+     |++.++++  .++.+++|++.++.
T Consensus       292 i~i~d~~~~~~~-~~~l~~~~-~~~~v~~~~~s-----p~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          292 IRYFEITSEAPF-LHYLSMFS-SKESQRGMGYM-----PKRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             EEEEEECSSTTC-EEEEEEEC-CSSCCSEEEEC-----CGGGSCGG--GTEEEEEEEEETTE
T ss_pred             EEEEEecCCCcc-eEeecccc-cCCcccceEEe-----ccccccee--cceeEEEEEcCCCc
Confidence            999999987631 01222222 34556777787     89888764  56799999988754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=2.6e-27  Score=232.28  Aligned_cols=240  Identities=14%  Similarity=0.214  Sum_probs=196.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|+|++||+|+.||+|++||+.+++++..+.+|...+..                    +...       
T Consensus        68 ~~V--~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~--------------------~~~~-------  118 (318)
T 4ggc_A           68 EYI--SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS--------------------LSWN-------  118 (318)
T ss_dssp             CCE--EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE--------------------EEEE-------
T ss_pred             CeE--EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE--------------------eecC-------
Confidence            457  56699999999999999999999999999999888766543221                    1111       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce----eeEeecCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL----LGKFRAST  159 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~  159 (579)
                        +..+++++.++.+++|+...+........+|...+..+.|+++++++++++.||+|++||+.+++.    ......+.
T Consensus       119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  196 (318)
T 4ggc_A          119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ  196 (318)
T ss_dssp             --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred             --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence              678999999999999999987665555578999999999999999999999999999999987753    34455677


Q ss_pred             CCeeEEEEccCCCEEE---EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe-cCCCeEEEEEcCCCc
Q 008058          160 KGISCMAVSSDGKMLA---TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA-VGERYIALWRTDGVK  233 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~---~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s-~~d~~i~vwd~~~~~  233 (579)
                      +.|.+++++|++..++   +++  +.|++||.+........ .+...+..+.|+|++..+++++ ..|+.|++||+++++
T Consensus       197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~  275 (318)
T 4ggc_A          197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  275 (318)
T ss_dssp             SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence            8999999999766443   333  79999999988776655 4778899999999999887754 368999999999876


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .     +..+..|...+.++.|+     |+|.+|++|+.||+|+|||+...+
T Consensus       276 ~-----~~~l~gH~~~V~~l~~s-----pdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          276 K-----VAELKGHTSRVLSLTMS-----PDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTTEEEEECCSCCC
T ss_pred             E-----EEEEcCCCCCEEEEEEc-----CCCCEEEEEecCCeEEEEECCCCC
Confidence            3     45666667778888898     999999999999999999986543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=9e-29  Score=254.40  Aligned_cols=247  Identities=15%  Similarity=0.163  Sum_probs=184.1

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++|+.||+|+|||+.++........+.                ....+.++.|.+.    
T Consensus       163 H~~~V--~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~----  220 (435)
T 4e54_B          163 AGGSI--TGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT----------------INIWFCSLDVSAS----  220 (435)
T ss_dssp             SSCCC--CEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS----------------CSCCCCCEEEETT----
T ss_pred             CCCCE--EEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC----------------CCccEEEEEECCC----
Confidence            35788  5559998 78999999999999999998665443322111                1123345555543    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeE---ee
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGK---FR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~---~~  156 (579)
                           +.+|++|+.+|.|++||+.... +.. +.+|...|++++|+|+++ ++++++.|++|++||+++++....   ..
T Consensus       221 -----~~~l~~g~~dg~i~~wd~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~  293 (435)
T 4e54_B          221 -----SRMVVTGDNVGNVILLNMDGKE-LWN-LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL  293 (435)
T ss_dssp             -----TTEEEEECSSSBEEEEESSSCB-CCC-SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred             -----CCEEEEEeCCCcEeeeccCcce-eEE-EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence                 7889999999999999987543 333 368999999999999886 688999999999999988765443   35


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC------EEEEEEecCCCEEEEEec---------
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA------VRFMTFSDNGKYVLSSAV---------  219 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~------v~~l~~~~~~~~l~s~s~---------  219 (579)
                      +|...|++++|+|+|++|++++  |.|++||+.+++....+..|...      +....|+|++..+++++.         
T Consensus       294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  373 (435)
T 4e54_B          294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCT  373 (435)
T ss_dssp             BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSS
T ss_pred             eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEE
Confidence            6888999999999999999998  89999999999888777666532      334567777777666543         


Q ss_pred             --CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          220 --GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       220 --~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                        .++.|++||..+++..   ......|...+..+..|+     |+|.+|++|+ |++|+|||+++++.
T Consensus       374 ~~~~~~i~iwd~~~g~~~---~~l~~~~~~~v~s~~~fs-----pdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          374 PYELRTIDVFDGNSGKMM---CQLYDPESSGISSLNEFN-----PMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             TTCCCCEEEECSSSCCEE---EEECCSSCCCCCCEEEEC-----TTSSCEEEEC-SSEEEECCCC----
T ss_pred             ecCCCEEEEEECCCCcEE---EEEeCCCCCcEEEEEEEC-----CCCCEEEEEc-CCcEEEEECCcCee
Confidence              3467999999988643   222223444455555787     9999998876 88999999988764

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.8e-28  Score=249.24  Aligned_cols=254  Identities=13%  Similarity=0.137  Sum_probs=199.3

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccC----------CeEEEEecCCCCCCEEEEEEccCCC-EEEE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA----------GQLKWRLSDCHPGGVSAISFATHGS-CIYS  134 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~----------~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s  134 (579)
                      ..+++++|.+.+        +.++++++.+|.|++||+.+          ......+ .+|...|++++|+|++. +|++
T Consensus       129 ~~v~~l~~~p~~--------~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          129 GEVNRARYMPQN--------ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             SCCSEEEEETTE--------EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEE
T ss_pred             CcEEEEEECCCC--------CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEE
Confidence            467788888753        56899999999999999987          3444444 57999999999999988 9999


Q ss_pred             EeCCCcEEEEeCCCCce-------eeEeecCCCCeeEEEEcc-CCCEEEEEC--CeEEEEECCCC---eeeEEeecCCCC
Q 008058          135 AGADGMVCEIDPLTGSL-------LGKFRASTKGISCMAVSS-DGKMLATAA--GQLKTFNCSDH---KKMQKFSGHPGA  201 (579)
Q Consensus       135 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~---~~~~~~~~h~~~  201 (579)
                      |+.||.|++||+.++..       ...+.+|...|.+++|+| ++.++++++  |.|++||++++   +.+..+..|...
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            99999999999987432       456778999999999999 677888886  99999999987   577788899999


Q ss_pred             EEEEEEecCCC-EEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC-cEEEEEEcCCeEEEE
Q 008058          202 VRFMTFSDNGK-YVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG-LYVLAISETGVCYIW  279 (579)
Q Consensus       202 v~~l~~~~~~~-~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~dg~i~iw  279 (579)
                      |++++|+|+++ .+++++ .|+.|++||++....    .+..+..+...+..+.|+     |++ .+|++++.||.|++|
T Consensus       280 v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~----~~~~~~~h~~~v~~i~~s-----p~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGS-ADKTVALWDLRNLKL----KLHSFESHKDEIFQVQWS-----PHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             EEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTS----CSEEEECCSSCEEEEEEC-----SSCTTEEEEEETTSCCEEE
T ss_pred             eEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCC----CeEEeecCCCCEEEEEEC-----CCCCCEEEEEeCCCcEEEE
Confidence            99999999998 466666 799999999998542    234455556667788887     887 479999999999999


Q ss_pred             ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                      |+.........               .      .    ..++                .........+|...|.+++|+|
T Consensus       350 d~~~~~~~~~~---------------~------~----~~~~----------------~~~~~~~~~~h~~~v~~~~~~p  388 (430)
T 2xyi_A          350 DLSKIGEEQST---------------E------D----AEDG----------------PPELLFIHGGHTAKISDFSWNP  388 (430)
T ss_dssp             EGGGTTCCCCH---------------H------H----HHHC----------------CTTEEEECCCCSSCEEEEEECS
T ss_pred             eCCCCccccCc---------------c------c----cccC----------------CcceEEEcCCCCCCceEEEECC
Confidence            98663221100               0      0    0000                0112234557888999999999


Q ss_pred             Ccc-eeeccccceecccceeee
Q 008058          360 DGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       360 dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                      ++. ++ ++++.|+.+++|++.
T Consensus       389 ~~~~~l-~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          389 NEPWII-CSVSEDNIMQVWQMA  409 (430)
T ss_dssp             SSTTEE-EEEETTSEEEEEEEC
T ss_pred             CCCCEE-EEEECCCCEEEeEcc
Confidence            999 66 999999999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.9e-28  Score=244.66  Aligned_cols=232  Identities=12%  Similarity=0.025  Sum_probs=172.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEE----EecCCCCCCEEEEEEcc--------CCCEEEEEeCCCcEEEEeCCCCceee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKW----RLSDCHPGGVSAISFAT--------HGSCIYSAGADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~----~~~~~h~~~V~~l~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~  153 (579)
                      +.++++++.|++|++||..+++...    ..+.+|.+.|++++|+|        |+++|++|+.|++|++||+.++..+.
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~  180 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL  180 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence            6689999999999999999987542    23578999999999998        88999999999999999999988888


Q ss_pred             EeecCCCCeeEEEEccCCC-EEEEEC--CeEEEEECCCCeeeEE-------------------------eecCCCCEEEE
Q 008058          154 KFRASTKGISCMAVSSDGK-MLATAA--GQLKTFNCSDHKKMQK-------------------------FSGHPGAVRFM  205 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~-~l~~~~--g~i~vwd~~~~~~~~~-------------------------~~~h~~~v~~l  205 (579)
                      .+..|...+.+++|+|++. +|++++  |+|++||+++++....                         ..+|...+.++
T Consensus       181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v  260 (393)
T 4gq1_A          181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV  260 (393)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred             eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence            8888999999999999875 788887  8999999988754322                         24677889999


Q ss_pred             EEe-cCCCEEEEEecCCCeEEEEEcCCCccccce--------------eEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058          206 TFS-DNGKYVLSSAVGERYIALWRTDGVKKQSAS--------------CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       206 ~~~-~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      .|+ |+++.+++++ .|+++++||+..++.....              ...........+...++.    .+++.++++|
T Consensus       261 ~~~~~dg~~l~s~s-~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sg  335 (393)
T 4gq1_A          261 RWIGSDGSGILAMC-KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP----RYMDYFATAH  335 (393)
T ss_dssp             EEETTTTCEEEEEC-TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS----SCTTEEEEEE
T ss_pred             eeecCCCCEEEEEe-CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc----CCCCEEEEEE
Confidence            987 7999999987 7999999999876532100              011111222223333333    1355677788


Q ss_pred             EcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCC
Q 008058          271 SETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSG  350 (579)
Q Consensus       271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~  350 (579)
                      +.||+|++||..+++.+.                                                       ...+|..
T Consensus       336 s~Dg~V~lwd~~~~~~~~-------------------------------------------------------~~~~~~~  360 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNS-------------------------------------------------------IPIQLGM  360 (393)
T ss_dssp             TTTTEEEEEETTCTTCCE-------------------------------------------------------EEEECSS
T ss_pred             CCCCEEEEEECCCCcEEE-------------------------------------------------------EecCCCC
Confidence            889999999986654311                                                       2235667


Q ss_pred             CcEEEeecCCcceeeccccceecccceee
Q 008058          351 EDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       351 ~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +|.+++|||||++| +++++|+. .+|.+
T Consensus       361 ~V~svafspdG~~L-A~as~~Gv-~lvrL  387 (393)
T 4gq1_A          361 PIVDFCWHQDGSHL-AIATEGSV-LLTRL  387 (393)
T ss_dssp             CEEEEEECTTSSEE-EEEESSEE-EEEEE
T ss_pred             cEEEEEEcCCCCEE-EEEeCCCe-EEEEE
Confidence            89999999999999 99987664 45544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.9e-28  Score=244.13  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=161.0

Q ss_pred             EEEEccCCCEEEEEe--CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPALDYFAICS--GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~dg~~las~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +++|||||+++|+++  .|++|+|||+.+++++..+. |...+..+.|+++                           +.
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd---------------------------g~  189 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD---------------------------GK  189 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------SS
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------Cc
Confidence            459999999987554  68999999999999988775 4444555555554                           77


Q ss_pred             EEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEEEEeCCCCce----eeEeecC
Q 008058           88 LLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADG----MVCEIDPLTGSL----LGKFRAS  158 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg----~v~iwd~~~~~~----~~~~~~~  158 (579)
                      ++++++ ++.+.+|+..+++.+ .....+|...|.+++|+|+++++++++.|+    .++.||+..+..    ...+.+|
T Consensus       190 ~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~  268 (365)
T 4h5i_A          190 VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR  268 (365)
T ss_dssp             EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred             eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC
Confidence            888887 455677777776654 344567889999999999999999999887    688899876643    3457788


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...|++++|+|+|++|++|+  ++|+|||+++++++.++ .+|..+|++++|+|||++|++++ .|++|+||++...
T Consensus       269 ~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D~tvrvw~ip~~  344 (365)
T 4h5i_A          269 FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AANTIHIIKLPLN  344 (365)
T ss_dssp             CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TTSEEEEEECCTT
T ss_pred             CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CCCeEEEEEcCCC
Confidence            99999999999999999998  89999999999999886 78999999999999999999998 7999999999754

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=9.3e-28  Score=246.87  Aligned_cols=239  Identities=14%  Similarity=0.264  Sum_probs=191.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|  ++++|++|+.||+|++||+.+++....+..|...+.                  ++.|.        
T Consensus       173 ~~~v--~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~------------------~l~~~--------  222 (435)
T 1p22_A          173 TGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL------------------HLRFN--------  222 (435)
T ss_dssp             SSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE------------------EEECC--------
T ss_pred             CCcE--EEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE------------------EEEEc--------
Confidence            4667  54466  889999999999999999999999988876655444                  34442        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                         +..+++|+.||.|++||+.++....  ....+|...|.++.|  +++++++|+.||.|++||+.+++.+..+.+|..
T Consensus       223 ---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~  297 (435)
T 1p22_A          223 ---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR  297 (435)
T ss_dssp             ---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC
Confidence               4579999999999999999876542  445789999999999  788999999999999999999999999999999


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc--
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS--  236 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~--  236 (579)
                      .|.+++++  ++++++|+  |.|++||+++++.+.++.+|...|.++.|  ++.++++++ .||.|++||+..+....  
T Consensus       298 ~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~-~dg~i~vwd~~~~~~~~~~  372 (435)
T 1p22_A          298 GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA-YDGKIKVWDLVAALDPRAP  372 (435)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE-TTSCEEEEEHHHHTSTTSC
T ss_pred             cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe-CCCcEEEEECCCCCCcccc
Confidence            99999994  67888887  89999999999999999999999999999  678999988 79999999997654211  


Q ss_pred             --ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          237 --ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                        ..+...+..+...+..+.|       ++.+|++++.||.|++||+.+.....
T Consensus       373 ~~~~~~~~~~~h~~~v~~l~~-------~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          373 AGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             TTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC--------
T ss_pred             ccchheeeccCCCCCeEEEEe-------CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence              1134455555555666665       56789999999999999998765543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.7e-27  Score=242.15  Aligned_cols=280  Identities=15%  Similarity=0.089  Sum_probs=213.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|+|++.++++++.|+.|++||..+++....+....            ..+| ...+.++.|.+.         +.+
T Consensus       126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~-~~~v~~~~~~~~---------~~~  183 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEK------------YKKK-LGFVETISIPEH---------NEL  183 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHH------------HHTT-CCEEEEEEEGGG---------TEE
T ss_pred             eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccc------------cccc-CCceeEEEEcCC---------CEE
Confidence            355999977788888889999999999998876432100            0112 223455666332         778


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      +++++.++.|++||+.+++.+..+ ..|...+.+++|+|+++.+++++ .|+.|++||+.+++.+..+..+ ..+.+++|
T Consensus       184 ~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~  261 (433)
T 3bws_A          184 WVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLL  261 (433)
T ss_dssp             EEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEE
T ss_pred             EEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEE
Confidence            999999999999999999888666 46888999999999999886554 7999999999999988887754 46899999


Q ss_pred             ccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          168 SSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       168 ~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|+|+.+++++          |.|++||+++++.+..+ .|...+.+++|+|++++++.++..|+.|++||+.+++..  
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--  338 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--  338 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--
Confidence            99999888765          38999999999877766 466688999999999877666558999999999976533  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc---------------CCeEEEEECCCceeecccCCceEEeeeccc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE---------------TGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                         ..+.+. ..+..+.|+     |+|+++++++.               ||.|++||..+++.+..             
T Consensus       339 ---~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~-------------  396 (433)
T 3bws_A          339 ---KSIPVF-DKPNTIALS-----PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF-------------  396 (433)
T ss_dssp             ---EEEECS-SSEEEEEEC-----TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------------
T ss_pred             ---EEecCC-CCCCeEEEc-----CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------------
Confidence               333433 335567777     99999988876               46888888766543321             


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                                +.. ...+..++|+|||++|.++++.|+++++|++.
T Consensus       397 ------------------------------------------~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          397 ------------------------------------------WEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ------------------------------------------EEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             ------------------------------------------ecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence                                                      111 22578899999999983344469999999874

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8.4e-28  Score=263.85  Aligned_cols=236  Identities=14%  Similarity=0.172  Sum_probs=195.6

Q ss_pred             CcEEEEEECCCeEEEEEccC--CeEEEEecCCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEeCCCCc--eeeEeecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSA--GQLKWRLSDCHPGGVSAISFATH--GSCIYSAGADGMVCEIDPLTGS--LLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~--~~~~~~~~~~h~~~V~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~  159 (579)
                      +.++++|+.||.|++||+..  ++....+ .+|.++|++++|+|+  +++|++|+.||.|++||+.+++  .+..+.+|.
T Consensus        21 g~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~   99 (753)
T 3jro_A           21 GKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS   99 (753)
T ss_dssp             SCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence            77899999999999999984  4455444 689999999999988  9999999999999999999887  677788899


Q ss_pred             CCeeEEEEccC--CCEEEEEC--CeEEEEECCCC--eeeEEeecCCCCEEEEEEec-------------CCCEEEEEecC
Q 008058          160 KGISCMAVSSD--GKMLATAA--GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSD-------------NGKYVLSSAVG  220 (579)
Q Consensus       160 ~~v~~l~~~p~--g~~l~~~~--g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~-------------~~~~l~s~s~~  220 (579)
                      ..|++++|+|+  ++++++|+  |.|++||++++  .....+.+|...|.++.|+|             ++.++++++ .
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~  178 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-A  178 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-T
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-C
Confidence            99999999999  99999998  89999999887  34556788999999999999             588899988 7


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCC---CcEEEEEEcCCeEEEEECCCceeecccCCceEEe
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDA---GLYVLAISETGVCYIWYGQNIEELRNTKATKILS  297 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  297 (579)
                      ||.|++||++.+... ......+..+...+.++.|+     |+   +.+|++++.||.|++||+.+++......      
T Consensus       179 dg~I~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~s-----p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~------  246 (753)
T 3jro_A          179 DNLVKIWKYNSDAQT-YVLESTLEGHSDWVRDVAWS-----PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT------  246 (753)
T ss_dssp             TSCEEEEEEETTTTE-EEEEEEECCCSSCEEEEEEC-----CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC------
T ss_pred             CCeEEEEeccCCccc-ceeeeeecCCCCcEEEEEec-----cCCCCCCEEEEEecCCEEEEecCCCCCCcceeE------
Confidence            999999999887532 22444556666778888888     88   8999999999999999987653210000      


Q ss_pred             eecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccce
Q 008058          298 SSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGR  377 (579)
Q Consensus       298 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w  377 (579)
                                      +                            .....|...+.+++|+|||.++ ++++.|+.+++|
T Consensus       247 ----------------~----------------------------~~~~~~~~~v~~l~~spdg~~l-~s~s~Dg~I~vw  281 (753)
T 3jro_A          247 ----------------L----------------------------LKEEKFPDVLWRASWSLSGNVL-ALSGGDNKVTLW  281 (753)
T ss_dssp             ----------------B----------------------------SSSSCCSSCCCCEEECTTTCCE-EEECSSSCEECC
T ss_pred             ----------------E----------------------------eccCCCCCceEEEEEcCCCCEE-EEEcCCCEEEEE
Confidence                            0                            0112466789999999999999 999999999999


Q ss_pred             eee
Q 008058          378 YVQ  380 (579)
Q Consensus       378 ~~~  380 (579)
                      ++.
T Consensus       282 d~~  284 (753)
T 3jro_A          282 KEN  284 (753)
T ss_dssp             BCC
T ss_pred             ecC
Confidence            985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=2.9e-27  Score=243.86  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=187.4

Q ss_pred             CcccceEEEEccCC--CEEEEEeCCCcEEEEECCCCeEEEEec---cccc------cccccccc--------------cc
Q 008058            4 SNIRDILTSFSPAL--DYFAICSGDARIKIWDTLKGQVQTEFA---DIAS------TETTSLYG--------------NR   58 (579)
Q Consensus         4 ~~V~~~~~~fs~dg--~~las~s~dg~i~vwd~~~~~~~~~~~---~~~~------~~~~~~~~--------------~~   58 (579)
                      ++|  .+++|+|++  .+|++++.||+|++||+.++.......   .+.+      .+....+.              ..
T Consensus        94 ~~V--~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           94 EKI--NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             CCC--CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             Cce--EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence            678  555999998  799999999999999998765432110   0000      00000000              00


Q ss_pred             cccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCC-eEEEE------ecCCCCCCEEEEEEccCC-C
Q 008058           59 LEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG-QLKWR------LSDCHPGGVSAISFATHG-S  130 (579)
Q Consensus        59 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~-~~~~~------~~~~h~~~V~~l~~~~~~-~  130 (579)
                      +..+| ...+.+++|.+.         +.++++| .||.|++||+.++ +....      ...+|...|++++|+|++ +
T Consensus       172 ~~~~h-~~~v~~~~~~~~---------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~  240 (447)
T 3dw8_B          172 FANAH-TYHINSISINSD---------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN  240 (447)
T ss_dssp             ECSCC-SSCCCEEEECTT---------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred             eccCC-CcceEEEEEcCC---------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence            01123 345677888774         6788888 8999999999954 44332      246799999999999998 9


Q ss_pred             EEEEEeCCCcEEEEeCCCCce----eeEeecCCC------------CeeEEEEccCCCEEEEEC-CeEEEEECCC-Ceee
Q 008058          131 CIYSAGADGMVCEIDPLTGSL----LGKFRASTK------------GISCMAVSSDGKMLATAA-GQLKTFNCSD-HKKM  192 (579)
Q Consensus       131 ~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~------------~v~~l~~~p~g~~l~~~~-g~i~vwd~~~-~~~~  192 (579)
                      +|++|+.||.|++||+++++.    +..+..|..            .|.+++|+|+|++|++++ +.|++||+++ ++++
T Consensus       241 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          241 TFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPV  320 (447)
T ss_dssp             EEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCS
T ss_pred             EEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCcccc
Confidence            999999999999999999886    788888876            899999999999999998 9999999997 8888


Q ss_pred             EEeecCCCC---------------EEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE-----------------
Q 008058          193 QKFSGHPGA---------------VRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV-----------------  240 (579)
Q Consensus       193 ~~~~~h~~~---------------v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~-----------------  240 (579)
                      ..+.+|...               +..++|+|++++|++++ .|+.|++||+.+++.......                 
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCA  399 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEEC
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCCEEEEec-cCCEEEEEEcCCCcceeeeecccccccccccCCccccc
Confidence            889888642               23499999999999887 799999999998763210000                 


Q ss_pred             -----------EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          241 -----------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       241 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                                 ... .....+..+.|+     |++.+||+++.++ +++|..
T Consensus       400 ~~~~~~~~~~~~~~-~~~~~i~~~~~~-----p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          400 SGKRKKDEISVDSL-DFNKKILHTAWH-----PKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             SSCCCTTCEEGGGC-CTTSCCCEEEEC-----SSSSEEEEECSSC-EEEEEC
T ss_pred             cCCccccccccccc-ccCCceeEEEEC-----CCCCEEEEEecce-eeeecc
Confidence                       000 112234456776     9999999988775 778764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=5.7e-26  Score=229.91  Aligned_cols=264  Identities=13%  Similarity=0.099  Sum_probs=206.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEECCC
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGG   96 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g   96 (579)
                      ..+++++.|+.|++||..++++...+..+..                   ..+++|.+.         +..+ ++++.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-------------------~~~~~~s~d---------g~~l~~~~~~d~   54 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-------------------PMGAVISPD---------GTKVYVANAHSN   54 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-------------------EEEEEECTT---------SSEEEEEEGGGT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-------------------cceEEECCC---------CCEEEEECCCCC
Confidence            3677888999999999999999887764332                   345555543         5555 6666899


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE-
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML-  174 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l-  174 (579)
                      .|++||+.+++.+..+.. + ..+.+++|+|++++++.+ +.++.|++||+.+++.+..+..+ ..+.+++|+|+|+.+ 
T Consensus        55 ~i~v~d~~~~~~~~~~~~-~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~  131 (391)
T 1l0q_A           55 DVSIIDTATNNVIATVPA-G-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY  131 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC-S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred             eEEEEECCCCeEEEEEEC-C-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence            999999999998877643 3 389999999999987655 46799999999999988887754 478999999999977 


Q ss_pred             EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEe
Q 008058          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (579)
                      ++++  +.|++||+.+++.+..+..| ..+..++|+|++++++.++..|+.|++||+++++..     ....+.. .+..
T Consensus       132 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~-~~~~  204 (391)
T 1l0q_A          132 VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEA-APSG  204 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSS-EEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE-----EEEecCC-Cccc
Confidence            5665  89999999999998888765 456999999999988655557999999999887533     3344443 4556


Q ss_pred             EEecCCcccCCCcEEEEEE---cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceE
Q 008058          253 RCIDNGGVDDAGLYVLAIS---ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVH  329 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  329 (579)
                      +.|+     |++++|++++   .++.|++||+.+++.+..                                        
T Consensus       205 ~~~~-----~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~----------------------------------------  239 (391)
T 1l0q_A          205 IAVN-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITAR----------------------------------------  239 (391)
T ss_dssp             EEEC-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEE----------------------------------------
T ss_pred             eEEC-----CCCCEEEEEecCcCCCcEEEEECCCCeEEEE----------------------------------------
Confidence            7777     9999999988   689999999877643221                                        


Q ss_pred             EEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          330 TFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       330 ~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                     +..|. .+.+++|+|||+++.++++.|+.+++|++.
T Consensus       240 ---------------~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          240 ---------------IPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             ---------------EECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ---------------EecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence                           11222 357889999998775788889999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.6e-26  Score=235.02  Aligned_cols=252  Identities=18%  Similarity=0.193  Sum_probs=191.7

Q ss_pred             CCCcccceEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+| ++++|++++.||.|++||+.+++....+.. .                  ....++.|.+.+++ 
T Consensus        98 ~~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~-  155 (408)
T 4a11_B           98 HRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-E------------------ETVYSHHMSPVSTK-  155 (408)
T ss_dssp             CSSCE--EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-S------------------SCEEEEEECSSCSS-
T ss_pred             CCCcE--EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-C------------------CceeeeEeecCCCC-
Confidence            45678  5669999 778999999999999999999988876641 1                  23445666665443 


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCc-eeeEe---
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGS-LLGKF---  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~-~~~~~---  155 (579)
                           +.++++++.+|.|++||+.+++.+..+ .+|...|.+++|+|++++ +++++.||.|++||++++. .+..+   
T Consensus       156 -----~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~  229 (408)
T 4a11_B          156 -----HCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH  229 (408)
T ss_dssp             -----CCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred             -----CcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence                 678999999999999999999887666 579999999999999984 8899999999999998765 33333   


Q ss_pred             ------------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEE
Q 008058          156 ------------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       156 ------------~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s  216 (579)
                                  ..|...|.+++|+|+++++++++  |.|++||+.+++....+.++.     ..+........+..+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T 4a11_B          230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF  309 (408)
T ss_dssp             TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred             ccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence                        56788999999999999999987  899999999987765443322     11221222233445555


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ++ .|+.|++||+.+++.     +..+..+...+..+.|+     |++.+|++++.||.|++||+.+++.+.....
T Consensus       310 ~~-~~~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~  374 (408)
T 4a11_B          310 VP-YGSTIAVYTVYSGEQ-----ITMLKGHYKTVDCCVFQ-----SNFQELYSGSRDCNILAWVPSLYEPVPDDDE  374 (408)
T ss_dssp             EE-ETTEEEEEETTTCCE-----EEEECCCSSCEEEEEEE-----TTTTEEEEEETTSCEEEEEECC---------
T ss_pred             Ee-cCCEEEEEECcCCcc-----eeeeccCCCeEEEEEEc-----CCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence            55 589999999998763     35566666777888888     9999999999999999999999987765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.2e-28  Score=244.51  Aligned_cols=249  Identities=14%  Similarity=0.176  Sum_probs=190.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .+++|||||++||+++.||+|+|||.++  ++..+. |...+.             ...+.+++|.|.      
T Consensus        85 ~~~V--~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~-------------~~sv~svafSPD------  140 (588)
T 2j04_A           85 VCYP--RVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLS-------------SRTYHCFEWNPI------  140 (588)
T ss_dssp             SCCE--EEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCST-------------TTCEEEEEECSS------
T ss_pred             CCcE--EEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccc-------------cccEEEEEEcCC------
Confidence            3567  7779999999999999999999999543  555555 443211             123446666554      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeE-------EEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQL-------KWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~-------~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-  151 (579)
                         +.+|++|+.||+|++||+.++..       +..+   ..+|.+.|.+++|+|||  +++++.|++|++||+..+.. 
T Consensus       141 ---G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~  215 (588)
T 2j04_A          141 ---ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ  215 (588)
T ss_dssp             ---SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC
T ss_pred             ---CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc
Confidence               88999999999999999998852       3343   26788999999999999  88889999999999987773 


Q ss_pred             --eeEee-cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEE--ecCCCEEEEEecCCCeEE
Q 008058          152 --LGKFR-ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTF--SDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       152 --~~~~~-~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~~~l~s~s~~d~~i~  225 (579)
                        .++++ +|...|.+++|+  |+.+++++ ++|++||+.+++......+|.+.|..+.|  +|++..+++++ +||+ +
T Consensus       216 ~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~-edG~-k  291 (588)
T 2j04_A          216 PVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN-KTSY-K  291 (588)
T ss_dssp             CCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-SCEE-E
T ss_pred             cceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-CCCC-E
Confidence              35664 788899999999  68888888 99999999988774444489999999999  99998888876 7999 9


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      +|..+.                     +.++     |++..+++.  |+++++|+..... +...+. ...+.+.. ++|
T Consensus       292 lw~~d~---------------------~~~s-----pd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va-~SP  340 (588)
T 2j04_A          292 VLLEDE---------------------LHVT-----ADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGIS-LSP  340 (588)
T ss_dssp             EEESSS---------------------EEEE-----CCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEE-ECT
T ss_pred             EEeecc---------------------EEEC-----CCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEE-ECC
Confidence            999761                     2254     888877764  9999999875443 444444 33333333 688


Q ss_pred             cccccchhhhhccc
Q 008058          306 SQKSATAAIFAAKL  319 (579)
Q Consensus       306 ~~~~~~~~i~~~~~  319 (579)
                      +++    .+++++.
T Consensus       341 dG~----~lA~~~~  350 (588)
T 2j04_A          341 DGY----SIAIVYD  350 (588)
T ss_dssp             TSS----EEEEEEE
T ss_pred             CCC----EEEEEEe
Confidence            887    5665554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=229.90  Aligned_cols=243  Identities=9%  Similarity=0.033  Sum_probs=179.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+.+  +|+|+   +++++.|++|++|+.........+..  .....     ....+| ...+.++.|.+..      
T Consensus        77 ~~v~~~--~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~--~~~~~-----~~~~~~-~~~v~~~~~~~~~------  137 (343)
T 3lrv_A           77 PNPRTG--GEHPA---IISRGPCNRLLLLYPGNQITILDSKT--NKVLR-----EIEVDS-ANEIIYMYGHNEV------  137 (343)
T ss_dssp             ECCCTT--CCCCS---EEEECSTTEEEEEETTTEEEEEETTT--CCEEE-----EEECCC-SSCEEEEECCC--------
T ss_pred             CCceee--eeCCc---eEEecCCCeEEEEEccCceEEeecCC--cceeE-----EeecCC-CCCEEEEEcCCCC------
Confidence            456445  88888   99999999999998764322221110  00000     000011 2245666666510      


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee-eEeec-CCCC
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL-GKFRA-STKG  161 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~-~~~~  161 (579)
                       .+.++++|+.||.|++||+.+++........|...|++++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |..+
T Consensus       138 -~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          138 -NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK  216 (343)
T ss_dssp             --CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC
T ss_pred             -CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC
Confidence             07889999999999999999999876555566778999999999999999999999999999999887 78888 9999


Q ss_pred             eeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec---CCCCEE--EEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---HPGAVR--FMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~---h~~~v~--~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |++++|+|+|.+|++++ +.|++||+++++.+..+..   |...+.  +++|+|++++|++++..|+.+++|++......
T Consensus       217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~  296 (343)
T 3lrv_A          217 IKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN  296 (343)
T ss_dssp             EEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred             EEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence            99999999999999998 8999999999876554443   444454  59999999999998734999999999776533


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccC---CCcEEEEEEcCCeEEEEE
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDD---AGLYVLAISETGVCYIWY  280 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~iwd  280 (579)
                           +..    .....+.|.     +   +...+++++.||.+.++-
T Consensus       297 -----~~~----~~~~~~~~~-----~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          297 -----WTK----DEESALCLQ-----SDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             -----EEE----EEEEECCC---------CCCCEEEEEEETTEEEEEE
T ss_pred             -----eEe----cCceeEecC-----ccccccceeEEEecCCceEEEE
Confidence                 111    233445554     5   788999999999999874

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=1.3e-26  Score=229.92  Aligned_cols=244  Identities=10%  Similarity=0.006  Sum_probs=193.0

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMV  141 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v  141 (579)
                      ..+++++|.+.         +.+|++++.+|.|++||+.+++   ..... .+|...|++++|+|+++ +|++++.||.|
T Consensus        12 ~~v~~~~~s~~---------~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i   81 (342)
T 1yfq_A           12 DYISDIKIIPS---------KSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             SCEEEEEEEGG---------GTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CcEEEEEEcCC---------CCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence            35667777764         7789999999999999999877   22233 47999999999999999 99999999999


Q ss_pred             EEEeC-CCCceeeEeec--CCCCeeEEEEccCCCEEEEEC--CeEEEEECCC---------CeeeEEeecCCCCEEEEEE
Q 008058          142 CEIDP-LTGSLLGKFRA--STKGISCMAVSSDGKMLATAA--GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTF  207 (579)
Q Consensus       142 ~iwd~-~~~~~~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~  207 (579)
                      ++||+ .+++. ..+.+  |...|.+++|+| ++++++++  +.|++||+++         ++++..+. |...|.+++|
T Consensus        82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence            99999 77754 67788  999999999999 99999887  8999999988         77777776 8999999999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcCCeEEEEECCCc-
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISETGVCYIWYGQNI-  284 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~-  284 (579)
                      +|++  +++++ .|+.|++||++. ....   .......+...+.++.|+     | ++.++++++.||.|++|+++.. 
T Consensus       159 ~~~~--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~~~~i~~i~~~-----~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          159 NSSR--LIVGM-NNSQVQWFRLPLCEDDN---GTIEESGLKYQIRDVALL-----PKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             CSSE--EEEEE-STTEEEEEESSCCTTCC---CEEEECSCSSCEEEEEEC-----SGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             cCCc--EEEEe-CCCeEEEEECCcccccc---ceeeecCCCCceeEEEEC-----CCCCCEEEEEecCCcEEEEEEcCCC
Confidence            9987  77776 799999999988 5432   112223444556778887     8 9999999999999999998765 


Q ss_pred             -----eeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          285 -----EELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       285 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                           +.......             ...                             ..    .-.+|...|.+++|+|
T Consensus       228 ~~~~~~~~~~~~~-------------~~~-----------------------------~~----~~~~~~~~i~~~~~s~  261 (342)
T 1yfq_A          228 DDYNSSKRFAFRC-------------HRL-----------------------------NL----KDTNLAYPVNSIEFSP  261 (342)
T ss_dssp             CSTTCTTCEEEEC-------------CCC-----------------------------CT----TCCSSCCCEEEEEECT
T ss_pred             cccccccceeeec-------------ccc-----------------------------cc----cccccceeEEEEEEcC
Confidence                 11110000             000                             00    0014667899999999


Q ss_pred             Ccceeeccccceecccceeee
Q 008058          360 DGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       360 dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +|.+| ++++.|+.+++|++.
T Consensus       262 ~~~~l-~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          262 RHKFL-YTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TTCCE-EEEETTSCEEEEETT
T ss_pred             CCCEE-EEecCCceEEEEcCc
Confidence            99999 999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.4e-26  Score=236.22  Aligned_cols=242  Identities=11%  Similarity=0.051  Sum_probs=189.3

Q ss_pred             cccceEEEEccCCCEE-EEEeCCCcEEEEECC--CCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            5 NIRDILTSFSPALDYF-AICSGDARIKIWDTL--KGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~l-as~s~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +|  .+++|+|+|++| ++|+.||+|+|||+.  ++.+...+..+.                ....+++++|.+.     
T Consensus       104 ~v--~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------------~~~~v~~~~~sp~-----  160 (450)
T 2vdu_B          104 YI--RNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC----------------FSKRPNAISIAED-----  160 (450)
T ss_dssp             CE--EEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE----------------CSSCEEEEEECTT-----
T ss_pred             ce--EEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc----------------CCCCceEEEEcCC-----
Confidence            57  566999999996 889999999999999  888777765211                1223456666553     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEE---EecCCCCCCEEEEEEccC---CCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKW---RLSDCHPGGVSAISFATH---GSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~---~~~~~h~~~V~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~-  154 (579)
                          +.+|++|+.+|.|++|++.+++...   ....+|...|++++|+|+   +++|++++.|++|++||+.+++.+.. 
T Consensus       161 ----~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          161 ----DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             ----SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE
T ss_pred             ----CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee
Confidence                7889999999999999998876532   133579999999999999   99999999999999999999988887 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec-------------------------CCCCEEEEEE
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG-------------------------HPGAVRFMTF  207 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~-------------------------h~~~v~~l~~  207 (579)
                      +.+|...|.+++|+ ++++|++++  +.|++||+++++.+..+..                         +...|.++.|
T Consensus       237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          237 LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            55899999999999 999999998  8999999999998888763                         2457899999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEc--CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc------CCeEEEE
Q 008058          208 SDNGKYVLSSAVGERYIALWRT--DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE------TGVCYIW  279 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~------dg~i~iw  279 (579)
                      +|+++++++++..|+.|++|++  ..+...  ..+..+..+ ..+..+.|+     |++.++++++.      +..|.+|
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l--~~~~~~~~~-~~v~~~~~~-----~~~~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDL--ALKQIITFP-YNVISLSAH-----NDEFQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCE--EEEEEEECS-SCEEEEEEE-----TTEEEEEECCTTCCSSCCCSEEEE
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCce--eeccEeccC-CceEEEEec-----CCcEEEEEecccCCCCCCcceEEE
Confidence            9999999998756999999999  433211  234444444 445667776     75444444443      4557888


Q ss_pred             ECC
Q 008058          280 YGQ  282 (579)
Q Consensus       280 d~~  282 (579)
                      .+.
T Consensus       388 ~~~  390 (450)
T 2vdu_B          388 EYN  390 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.6e-26  Score=234.19  Aligned_cols=239  Identities=10%  Similarity=0.005  Sum_probs=161.0

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEE-----eccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTE-----FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      .+++++.+||+|+.|++|+|||..++.....     +.+|..                  .+.+++|.|..... ...++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~------------------~v~~v~~~p~~~~~-~~~d~  156 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHN------------------FVNDIDIADVYSAD-NRLAE  156 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSS------------------CEEEEEEEEEECTT-CSEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCC------------------ceEEEEEccccccc-cCCCC
Confidence            4566778999999999999999998876432     333443                  34556665521100 00017


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEeCCCCceeeEe----------
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGS-CIYSAGADGMVCEIDPLTGSLLGKF----------  155 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~----------  155 (579)
                      .+|++|+.|++|+|||+.++..+..+. +|..+|.+++|+|++. +|++++.||+|++||+++++.....          
T Consensus       157 ~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~  235 (393)
T 4gq1_A          157 QVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW  235 (393)
T ss_dssp             EEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred             CEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence            899999999999999999888776664 6888999999999875 7999999999999999887543322          


Q ss_pred             ---------------ecCCCCeeEEEEc-cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEec--------
Q 008058          156 ---------------RASTKGISCMAVS-SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD--------  209 (579)
Q Consensus       156 ---------------~~~~~~v~~l~~~-p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------  209 (579)
                                     .+|...+.++.|+ |+|+.+++++  +.+++||+.+++....+..|...+..+.+.|        
T Consensus       236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  315 (393)
T 4gq1_A          236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF  315 (393)
T ss_dssp             SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred             EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence                           3466788899987 7999999998  8999999998877766666665554443333        


Q ss_pred             -----------CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          210 -----------NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       210 -----------~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                                 .+..++++++.|+.|++||+.+++..     .....+...+..++|+     |+|++||+++.+| +.+
T Consensus       316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-----~~~~~~~~~V~svafs-----pdG~~LA~as~~G-v~l  384 (393)
T 4gq1_A          316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-----SIPIQLGMPIVDFCWH-----QDGSHLAIATEGS-VLL  384 (393)
T ss_dssp             CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-----EEEEECSSCEEEEEEC-----TTSSEEEEEESSE-EEE
T ss_pred             CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-----EEecCCCCcEEEEEEc-----CCCCEEEEEeCCC-eEE
Confidence                       23445555558999999999988644     2233344467788888     9999999998766 555


Q ss_pred             EEC
Q 008058          279 WYG  281 (579)
Q Consensus       279 wd~  281 (579)
                      |.+
T Consensus       385 vrL  387 (393)
T 4gq1_A          385 TRL  387 (393)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=3.9e-25  Score=211.34  Aligned_cols=248  Identities=14%  Similarity=0.091  Sum_probs=177.0

Q ss_pred             EEEEEeCCCcEEEEECCCC---eEEEEeccccccccccccccccc------cccc-cCccceEEeeeccccccc------
Q 008058           19 YFAICSGDARIKIWDTLKG---QVQTEFADIASTETTSLYGNRLE------REHL-SVDYTCMKWLSVDRKKKR------   82 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~w~~~~~~~~~------   82 (579)
                      .+++++ ...|++|+..++   +..++++.+..++..+.+.++..      -|++ ...+..+++.|.++..+.      
T Consensus        56 ~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            455666 568999999999   89999999999999998888511      0111 112334444443211000      


Q ss_pred             ------ccCCcEEEEEE---CCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEeCCCC
Q 008058           83 ------KLGSSLLVLGT---GGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFAT---HGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        83 ------~~~~~~l~~~~---~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~  149 (579)
                            ......++.++   .++.|++|++.. |+.+..+ .+|...++.++|+|   ++.+|++++.|++|++||+.+|
T Consensus       135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG  213 (356)
T 2w18_A          135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG  213 (356)
T ss_dssp             EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC
T ss_pred             CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC
Confidence                  00122233333   378899999844 6665444 46888888888888   7789999999999999999999


Q ss_pred             ceeeEeecCCC---CeeEEEEccCCCEEE------------EEC--CeEEEEECCCCeeeEEe-----ecCCCCEEEEEE
Q 008058          150 SLLGKFRASTK---GISCMAVSSDGKMLA------------TAA--GQLKTFNCSDHKKMQKF-----SGHPGAVRFMTF  207 (579)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~------------~~~--g~i~vwd~~~~~~~~~~-----~~h~~~v~~l~~  207 (579)
                      ++++++.+|..   .+.+++|+|+|.+++            +|+  ++|++||..+++.+..+     .+|...+.+..+
T Consensus       214 k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~  293 (356)
T 2w18_A          214 QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV  293 (356)
T ss_dssp             CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred             cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence            99999987543   677889999999874            344  79999999999987765     367666554444


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      +  +.++++++ .|++|++||+.+++.     +.++. |....+..+.|+     |||++|++|+.|++|+|||+
T Consensus       294 s--g~~lASgS-~DgTIkIWDl~tGk~-----l~tL~gH~~~vvs~vafS-----PDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          294 K--DHCAAAIL-TSGTIAIWDLLLGQC-----TALLPPVSDQHWSFVKWS-----GTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             E--TTEEEEEE-TTSCEEEEETTTCSE-----EEEECCC--CCCCEEEEC-----SSSSEEEEECTTSCEEEEEE
T ss_pred             C--CCEEEEEc-CCCcEEEEECCCCcE-----EEEecCCCCCeEEEEEEC-----CCCCEEEEEECCCcEEEecC
Confidence            3  77888877 799999999999873     35554 444455667888     99999999999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=224.91  Aligned_cols=239  Identities=12%  Similarity=0.037  Sum_probs=179.0

Q ss_pred             CcEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.+|++|+.||.|++||+.+ +..+.....+|...|++++|+|++++|++++.||.|++||+.+++.+. +..|...|.+
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~  132 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT  132 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence            47899999999999999998 665545557899999999999999999999999999999999888776 5569999999


Q ss_pred             EEE--ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          165 MAV--SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~--~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      ++|  +|+++++++++  |.|++||+++++.+..+..|. .+.++.+.+  ..+++++ .|+.+.+|+++.....   ..
T Consensus       133 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~---~~  205 (368)
T 3mmy_A          133 IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVAT-AERGLIVYQLENQPSE---FR  205 (368)
T ss_dssp             EEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEEE-GGGCEEEEECSSSCEE---EE
T ss_pred             EEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEEe-CCCcEEEEEeccccch---hh
Confidence            999  89999999987  899999999999999888664 666676664  4677776 5999999999876532   11


Q ss_pred             EeeecCceeeEeEEecCCcccCCC----cEEEEEEcCCeEEEEECCCcee---ecccCCceEEeeecccCcccccccchh
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAG----LYVLAISETGVCYIWYGQNIEE---LRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      ...........+..+.     +++    ..+++++.||.|++||+.....   +.....+..            .     
T Consensus       206 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~------------~-----  263 (368)
T 3mmy_A          206 RIESPLKHQHRCVAIF-----KDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS------------N-----  263 (368)
T ss_dssp             ECCCSCSSCEEEEEEE-----ECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE------------C-----
T ss_pred             hccccccCCCceEEEc-----ccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec------------c-----
Confidence            1111111222233332     222    3399999999999999876632   111100000            0     


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                                .......+|...|.+++|+|||.+| ++++.|+.+++|++.+
T Consensus       264 --------------------------~~~~~~~~~~~~v~~~~~sp~~~~l-~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          264 --------------------------GTNTSAPQDIYAVNGIAFHPVHGTL-ATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             ------------------------------CCCEEECCEEEEEECTTTCCE-EEEETTSCEEEEETTT
T ss_pred             --------------------------cccccccccccceEEEEEecCCCEE-EEEccCCeEEEEECCC
Confidence                                      0000123466689999999999999 9999999999999853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=3e-24  Score=217.27  Aligned_cols=240  Identities=10%  Similarity=0.064  Sum_probs=190.0

Q ss_pred             eEEEEccCCCEE-EEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYF-AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~l-as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+++|+|+|+++ ++++.|++|++||..+++....+..+.                   ...+++|.+.         +.
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------------~v~~~~~spd---------g~   86 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------------------SPQGVAVSPD---------GK   86 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------------------SEEEEEECTT---------SS
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------------------CccceEECCC---------CC
Confidence            566999999977 566689999999999999888775332                   3345555543         55


Q ss_pred             EEEE-EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           88 LLVL-GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~-~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      .+++ ++.++.|++||+.+++.+..+.  +...+.+++|+|+|+.+ ++++.|+.|++||+.+++.+..+..+ ..+.++
T Consensus        87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~  163 (391)
T 1l0q_A           87 QVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGI  163 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceE
Confidence            5654 4466999999999999876653  34578999999999987 67778999999999999988888765 467999


Q ss_pred             EEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeE
Q 008058          166 AVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       166 ~~~p~g~~l~-~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      +|+|+|+.++ +++  +.|++||+++++.+..+. +...+.+++|+|+++++++++.  .++.|++||+.+++..     
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-----  237 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----  237 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-----
Confidence            9999999874 554  799999999998887776 5567899999999999998874  5899999999887533     


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEE-EEEEcCCeEEEEECCCceeecccC
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+..+.. ...+.|+     |+|++| ++++.|+.|++||+.+++.+....
T Consensus       238 ~~~~~~~~-~~~~~~s-----~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          238 ARIPVGPD-PAGIAVT-----PDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EEEECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEecCCC-ccEEEEc-----cCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            33333333 4566776     899888 566789999999999988776543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=4.7e-25  Score=231.69  Aligned_cols=323  Identities=8%  Similarity=-0.010  Sum_probs=227.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +|+|++.++++++.|++|.+||..+++++..+..... +..+.|+++                           ++++++
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spd---------------------------g~~l~v  195 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSAS---------------------------GRYLLV  195 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTT---------------------------SCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCC---------------------------CCEEEE
Confidence            5899999999999999999999999999988863222 333444444                           889999


Q ss_pred             EECCCeEEEEEc--cCCeEEEEecCCCCCCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCCceeeEeecC------
Q 008058           92 GTGGGDVLALAV--SAGQLKWRLSDCHPGGVSAISFAT----HGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS------  158 (579)
Q Consensus        92 ~~~~g~i~iwd~--~~~~~~~~~~~~h~~~V~~l~~~~----~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~------  158 (579)
                      ++.++.|.+||+  .+++++.++.  +...+..++|+|    ||+++++++ .+++|.+||..+++++.++..+      
T Consensus       196 ~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~  273 (543)
T 1nir_A          196 IGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  273 (543)
T ss_dssp             EETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             ECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence            999999999999  8888887764  456789999999    999999888 4899999999999998887652      


Q ss_pred             ----CC-CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          159 ----TK-GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       159 ----~~-~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                          .. .+.++.++|++..++++.   +.|.+||..+.+.+.  .+ .+...+..+.|+|+|+++++++..+++|.+||
T Consensus       274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D  352 (543)
T 1nir_A          274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID  352 (543)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence                22 788999999887666554   899999998876544  44 36667889999999999888776789999999


Q ss_pred             cCCCccccceeEEee---ecCceeeEeEEecCCcccCC-CcEEEEEE-cCCeEEEEECCC-------ceeecccCCceEE
Q 008058          229 TDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDA-GLYVLAIS-ETGVCYIWYGQN-------IEELRNTKATKIL  296 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~  296 (579)
                      ..+++..   .....   .|+.....  +++     |+ +..++++. .|++|.+||.++       .+.++.++.....
T Consensus       353 ~~tg~l~---~~i~~g~~ph~g~g~~--~~~-----p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~  422 (543)
T 1nir_A          353 SKDRRLS---ALVDVGKTPHPGRGAN--FVH-----PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG  422 (543)
T ss_dssp             TTTTEEE---EEEECSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC
T ss_pred             CCCCeEE---EeeccCCCCCCCCCcc--cCC-----CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC
Confidence            9998744   11221   13322222  233     66 55566665 589999999988       6666555433211


Q ss_pred             eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEE--------ecCCCCcEEEeecCCcceeeccc
Q 008058          297 SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKI--------LVNSGEDINLNCSQDGVLLPMSQ  368 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~h~~~v~~~~~s~dg~~l~~s~  368 (579)
                      ... ..++|+++    .+++++..+.-.-.+..+.+.+-......++.+        ..|...+..+.|+|||+.+.+|.
T Consensus       423 ~~~-v~~~pdg~----~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  497 (543)
T 1nir_A          423 SLF-IKTHPKSS----HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSV  497 (543)
T ss_dssp             CCC-EECCTTCC----EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEE
T ss_pred             ceE-EEcCCCCC----cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEe
Confidence            111 12577777    666665211000002233333322222223443        24566799999999999984442


Q ss_pred             ----cceecccceeee
Q 008058          369 ----SLLKSKRGRYVQ  380 (579)
Q Consensus       369 ----s~d~~~~~w~~~  380 (579)
                          +.|++|.+||.+
T Consensus       498 ~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          498 WNGKNDSSALVVVDDK  513 (543)
T ss_dssp             ECCTTSCCEEEEEETT
T ss_pred             ecCCCCCCeEEEEECC
Confidence                358999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=3.3e-25  Score=221.21  Aligned_cols=233  Identities=12%  Similarity=0.098  Sum_probs=174.5

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++.+++++++ +++.|++|+|||..+++++..+. +...                  +.++.|.+           ..
T Consensus        63 ~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~------------------v~~v~~~~-----------~~  112 (355)
T 3vu4_A           63 KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAP------------------VKDLFLSR-----------EF  112 (355)
T ss_dssp             EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSC------------------EEEEEECS-----------SE
T ss_pred             EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCc------------------eEEEEEcC-----------CE
Confidence            448888888875 56778999999999999988775 2222                  33344422           22


Q ss_pred             EEEEECCCeEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCc---------------
Q 008058           89 LVLGTGGGDVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYS--AGADGMVCEIDPLTGS---------------  150 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s--~~~dg~v~iwd~~~~~---------------  150 (579)
                      ++++ .++.|++||+.++ +.+..+..    +...+++++  .+++.  |+.||.|++||+.+++               
T Consensus       113 ~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~  185 (355)
T 3vu4_A          113 IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAIL  185 (355)
T ss_dssp             EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-----------------
T ss_pred             EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccC
Confidence            3443 5789999999988 55433321    455566777  56665  5789999999998765               


Q ss_pred             -eeeEeecCCCCeeEEEEccCCCEEEEEC--Ce-EEEEECCCCeeeEEee-c-CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          151 -LLGKFRASTKGISCMAVSSDGKMLATAA--GQ-LKTFNCSDHKKMQKFS-G-HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       151 -~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~-i~vwd~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                       .+..+.+|...|++++|+|+|++|++|+  ++ |++||+++++.+.++. + |...|.+++|+|++++|++++ .|++|
T Consensus       186 p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s-~d~~v  264 (355)
T 3vu4_A          186 GKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS-DKWTL  264 (355)
T ss_dssp             -CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE-TTCEE
T ss_pred             cccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE-CCCEE
Confidence             2678999999999999999999999998  87 9999999999999998 6 999999999999999999998 79999


Q ss_pred             EEEEcCCCcccccee-----------------EEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          225 ALWRTDGVKKQSASC-----------------VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      ++||++.........                 .+.+.. .......++|+     ++|++|++++.||.+++|++..++
T Consensus       265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-----~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI-----SESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES-----SSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEe-----CCCCEEEEEeCCCeEEEEEEEcCC
Confidence            999998764221100                 000111 11112446676     899999999999999999876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=9.8e-26  Score=215.47  Aligned_cols=213  Identities=11%  Similarity=0.065  Sum_probs=159.1

Q ss_pred             CcccceEEEEccC----CCEEEEEeCCCcEEEEECCCCeEEEE-ecccccccccccccccccc--c--cccCccceEEee
Q 008058            4 SNIRDILTSFSPA----LDYFAICSGDARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLER--E--HLSVDYTCMKWL   74 (579)
Q Consensus         4 ~~V~~~~~~fs~d----g~~las~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~w~   74 (579)
                      .+|+.+  +|+||    ++++++++.+  ++||++.+++.+.. ..+|...+....++++-..  .  -.....+.+.|.
T Consensus       112 ~~v~sl--a~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          112 REIRAL--FCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             EEEEEE--CC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             cceEEE--EECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            356555  99999    9999998854  77888888887776 4677777777777665100  0  113345667777


Q ss_pred             ecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC--CCCEEEEEEccCCCEE------------EEEeCCCc
Q 008058           75 SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH--PGGVSAISFATHGSCI------------YSAGADGM  140 (579)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~l------------~s~~~dg~  140 (579)
                      +.+.+      +..|++|+.|++|+|||+.+|+++..+..+|  ...+.+++|+|+|.++            ++|+.|++
T Consensus       188 ~~~g~------~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          188 EVQGM------QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             EEETS------TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred             ccCCC------CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            64433      7899999999999999999999988874332  3468888999999876            56788999


Q ss_pred             EEEEeCCCCceeeEe-----ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEE-EEEEecCCC
Q 008058          141 VCEIDPLTGSLLGKF-----RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVR-FMTFSDNGK  212 (579)
Q Consensus       141 v~iwd~~~~~~~~~~-----~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~  212 (579)
                      |++||..+++.+..+     .+|...+.+..+  ++.++++++  ++|+|||+.+++++.++.+|...+. .++|+|||+
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~  339 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS  339 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS
T ss_pred             EEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC
Confidence            999999999887765     355555544444  478899987  8999999999999999999987655 589999999


Q ss_pred             EEEEEecCCCeEEEEEc
Q 008058          213 YVLSSAVGERYIALWRT  229 (579)
Q Consensus       213 ~l~s~s~~d~~i~vwd~  229 (579)
                      +|++++ .|++|++||+
T Consensus       340 ~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          340 HLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             EEEEEC-TTSCEEEEEE
T ss_pred             EEEEEE-CCCcEEEecC
Confidence            999997 7999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=7.9e-24  Score=215.61  Aligned_cols=311  Identities=9%  Similarity=-0.027  Sum_probs=214.1

Q ss_pred             EEccCCC-EEEEEe----CCC----cEEEEEC--CCCeEE--EEeccccccccccccccccccccccCccceEEeeeccc
Q 008058           12 SFSPALD-YFAICS----GDA----RIKIWDT--LKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus        12 ~fs~dg~-~las~s----~dg----~i~vwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +|++.|. ++++|+    .||    +|++||+  .+++++  ..+.++...+....+.+.      +..+.     ... 
T Consensus        69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~~-----~~~-  136 (415)
T 2hqs_A           69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTAS------DEVFE-----KLT-  136 (415)
T ss_dssp             HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHH------HHHHH-----HHH-
T ss_pred             HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHH------HHHHH-----HHc-
Confidence            7888874 666876    467    8999999  899877  446666554444333321      00000     000 


Q ss_pred             ccccccCCcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCC
Q 008058           79 KKKRKLGSSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTG  149 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~  149 (579)
                       ..+...+..++.++.+      +.|++||+..+.. ..+ .+|...|.+++|+|||++|++++.++   .|++||+.++
T Consensus       137 -g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          137 -GIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             -SSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             -CCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence             0000003445555544      6899999985543 333 46889999999999999999999875   9999999988


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEE-EEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--
Q 008058          150 SLLGKFRASTKGISCMAVSSDGKMLA-TAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--  222 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~-~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--  222 (579)
                      +.. .+..+...+.+++|+|||+.|+ +++    ..|++||+.+++. ..+..|...+.+++|+|||++|++++..++  
T Consensus       214 ~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          214 AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCc
Confidence            775 4666788999999999999888 554    3699999998865 567788899999999999999998874345  


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCCceeecccCCceEEeee
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|++||+.+++..      .+..+...+....|+     |+|++|++++.+   +.|++||+.+++...-. ... ...+
T Consensus       292 ~i~~~d~~~~~~~------~l~~~~~~~~~~~~s-----pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~~~-~~~~  358 (415)
T 2hqs_A          292 QVYKVNINGGAPQ------RITWEGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STF-LDET  358 (415)
T ss_dssp             EEEEEETTSSCCE------ECCCSSSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSS-SCEE
T ss_pred             EEEEEECCCCCEE------EEecCCCcccCeEEC-----CCCCEEEEEECcCCceEEEEEECCCCCEEEec-CCC-CcCC
Confidence            6788898876532      222333455567787     999999998874   58999999988654322 211 1111


Q ss_pred             cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008058          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (579)
                       ..++|+++    .|+.++.++.    ...+++..-  .....+.+..|.+.|.+++|+|.-.+
T Consensus       359 -~~~spdg~----~l~~~s~~~~----~~~l~~~d~--~g~~~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          359 -PSLAPNGT----MVIYSSSQGM----GSVLNLVST--DGRFKARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             -EEECTTSS----EEEEEEEETT----EEEEEEEET--TSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred             -eEEcCCCC----EEEEEEcCCC----ccEEEEEEC--CCCcEEEeeCCCCCCcCCcccccccc
Confidence             12677777    6777666531    123333331  23445677889999999999997654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=1.3e-23  Score=215.67  Aligned_cols=236  Identities=8%  Similarity=0.049  Sum_probs=187.6

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ++|  .+++|+|+|+++++++.|+.|++||..+++....+..+...+.                  +++|.+.       
T Consensus       170 ~~v--~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~~~-------  222 (433)
T 3bws_A          170 GFV--ETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK------------------ILLYDPI-------  222 (433)
T ss_dssp             CEE--EEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE------------------EEEEETT-------
T ss_pred             Cce--eEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee------------------EEEEcCC-------
Confidence            356  4559999999999999999999999999998888765544333                  4455443       


Q ss_pred             cCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--------CCCcEEEEeCCCCceeeE
Q 008058           84 LGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--------ADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        84 ~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--------~dg~v~iwd~~~~~~~~~  154 (579)
                        +..++ +++.++.|++||+.+++.+..+.  +...+.+++|+|+|+++++++        .||.|++||+.+++.+..
T Consensus       223 --~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          223 --RDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             --TTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             --CCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence              55564 45578999999999998876653  345699999999999999888        488999999999987776


Q ss_pred             eecCCCCeeEEEEccCCCEEE-EEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC-----------
Q 008058          155 FRASTKGISCMAVSSDGKMLA-TAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG-----------  220 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~-~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~-----------  220 (579)
                      +. +...+.+++|+|+++.++ +++  +.|++||+.+++.+..+. +...+.+++|+|+++++++++..           
T Consensus       299 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~  376 (433)
T 3bws_A          299 IG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK  376 (433)
T ss_dssp             EE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred             cc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence            64 456889999999997654 444  899999999999888876 77889999999999988888743           


Q ss_pred             ---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCC
Q 008058          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~  283 (579)
                         ||.|++||+.+++..     ..+... ..+..+.|+     |+|++|++++. ||.|++|+++.
T Consensus       377 g~~dg~v~~~d~~~~~~~-----~~~~~~-~~~~~~~~s-----~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          377 GLVLGKVYVIDTTTDTVK-----EFWEAG-NQPTGLDVS-----PDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CSSCCEEEEEETTTTEEE-----EEEECS-SSEEEEEEC-----TTSCEEEEEETTTTEEEEEEETT
T ss_pred             cccceEEEEEECCCCcEE-----EEecCC-CCCceEEEc-----CCCCEEEEEECCCCeEEEEEecC
Confidence               469999999887633     333333 345677777     99999998875 99999999763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=4.6e-23  Score=226.71  Aligned_cols=341  Identities=9%  Similarity=0.038  Sum_probs=217.4

Q ss_pred             CcccceEEEEccCCCEEEEEeC-CC-----cEEEEECCCCeEEEEecccccccccccccccc--c--cccc--cCccceE
Q 008058            4 SNIRDILTSFSPALDYFAICSG-DA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRL--E--REHL--SVDYTCM   71 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~-dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~--~~~~~~~   71 (579)
                      .+|  ..++|||||++|++++. |+     +|++||+.+++....+..+........++..-  .  ..+.  ...+..+
T Consensus        37 ~~~--~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           37 PTL--MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCC--EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCC--CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            456  45599999999999998 88     89999999998776665432210000000000  0  0000  0123455


Q ss_pred             EeeecccccccccCCcEEEEEECCCeEEEEEccCC---eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058           72 KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAG---QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        72 ~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~  148 (579)
                      .|.|.         ++.|++++. +.|++||+.++   +.. .+ ..|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus       115 ~~SpD---------g~~l~~~~~-~~i~~~d~~~~~~~~~~-~l-~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD---------AQRLLFPLG-GELYLYDLKQEGKAAVR-QL-THGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT---------SSEEEEEET-TEEEEEESSSCSTTSCC-BC-CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC---------CCEEEEEeC-CcEEEEECCCCCcceEE-Ec-ccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC
Confidence            66554         777888886 99999999988   543 33 46778899999999999999887 56899999998


Q ss_pred             CceeeEeecCCCC----------------eeEEEEccCCCEEEEEC--C-------------------------------
Q 008058          149 GSLLGKFRASTKG----------------ISCMAVSSDGKMLATAA--G-------------------------------  179 (579)
Q Consensus       149 ~~~~~~~~~~~~~----------------v~~l~~~p~g~~l~~~~--g-------------------------------  179 (579)
                      ++.......+...                +.+++|+|||++|++++  +                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            8766554433332                47899999999998875  3                               


Q ss_pred             --eEEEEECCC-CeeeEEee--cCCCCEEEEEEecCCCEEEEEec----CCCeEEEEEcCCCccccceeEEeeecCce--
Q 008058          180 --QLKTFNCSD-HKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAV----GERYIALWRTDGVKKQSASCVLAMEHPAV--  248 (579)
Q Consensus       180 --~i~vwd~~~-~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--  248 (579)
                        .|++||+.+ ++......  .|...+..++| |||++|++++.    .+..|++||+.+++..   .+........  
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~  337 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR---VLAHETSPTWVP  337 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE---EEEEEECSSCCC
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE---EEEEcCCCCcCC
Confidence              789999988 77654433  47788999999 99999987753    2568999999987643   2222211111  


Q ss_pred             eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhh-hccccceecCC
Q 008058          249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIF-AAKLQDIVKPA  326 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~  326 (579)
                      .+....|+     |||+++++++.||.++||.++ ++. ...+......+.....++++++    .|+ +++.++.   .
T Consensus       338 ~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~----~l~~~~~~~~~---~  404 (741)
T 2ecf_A          338 LHNSLRFL-----DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG----LAYFRAGIESA---R  404 (741)
T ss_dssp             CCSCCEEC-----TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT----EEEEEECSSCT---T
T ss_pred             cCCceEEC-----CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC----EEEEEEeCCCC---c
Confidence            22456676     999999999999988888765 233 3333322222221112566666    443 3433320   0


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccce---ecccceee
Q 008058          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYV  379 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~  379 (579)
                      ...++.....  ....+.+.. ...+..++|||||+++.++.+.+   ..+.+++.
T Consensus       405 ~~~l~~~~~~--g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          405 ESQIYAVPLQ--GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             CBEEEEEETT--CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred             eEEEEEEEcC--CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence            1223333211  112234443 45678999999999884544432   34566654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=6.3e-22  Score=195.26  Aligned_cols=287  Identities=9%  Similarity=0.046  Sum_probs=195.2

Q ss_pred             EEccCCCE-EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSPALDY-FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~dg~~-las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .|++++++ +++++.+++|++||..+++....+..+....                   .++|.+.         ++.++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------------~~~~s~d---------g~~l~   55 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-------------------DTAITSD---------CSNVV   55 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-------------------EEEECSS---------SCEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-------------------eEEEcCC---------CCEEE
Confidence            57777665 6677789999999999999887765332222                   3334332         66566


Q ss_pred             EEEC-CCeEEEEEccCCeE-EEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           91 LGTG-GGDVLALAVSAGQL-KWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        91 ~~~~-~g~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      +++. ++.|.+||+.+++. ...+ ..+..+..+++|+|+|++++++..++   .|++||+.+++.+..+.. ...+.++
T Consensus        56 ~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  133 (331)
T 3u4y_A           56 VTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGI  133 (331)
T ss_dssp             EEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEE
T ss_pred             EEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccce
Confidence            6655 88999999999987 4444 44555555599999999999555553   899999999998888774 3457999


Q ss_pred             EEccCCCEEEEEC---Ce-EEEEECCCCeee----EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          166 AVSSDGKMLATAA---GQ-LKTFNCSDHKKM----QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       166 ~~~p~g~~l~~~~---g~-i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      +|+|+|+++++++   +. |.+|++.....+    .....+...+..++|+|+|+++++++..++.|.+||+.+++... 
T Consensus       134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-  212 (331)
T 3u4y_A          134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-  212 (331)
T ss_dssp             EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-
T ss_pred             EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-
Confidence            9999998766654   67 999998764332    12223445689999999999877776678999999998876411 


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                       .+..+... .....+.|+     |+|+++++++ .++.|.+||..+++.....     .... . .....         
T Consensus       213 -~~~~~~~~-~~~~~~~~s-----pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-----~~~~-~-~~~~~---------  269 (331)
T 3u4y_A          213 -LLNAVGTN-NLPGTIVVS-----RDGSTVYVLTESTVDVFNFNQLSGTLSFVK-----SFGH-G-LLIDP---------  269 (331)
T ss_dssp             -EEEEEECS-SCCCCEEEC-----TTSSEEEEECSSEEEEEEEETTTTEEEEEE-----EEEC-C-CCCCC---------
T ss_pred             -eeeeccCC-CCCceEEEC-----CCCCEEEEEEcCCCEEEEEECCCCceeeec-----cccc-c-cccCC---------
Confidence             12333333 334556677     9999887765 4788999999887652110     0000 0 00000         


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                                                    .+......++|+|||++|.++++.++.+++|++.+.
T Consensus       270 ------------------------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          270 ------------------------------RPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             ------------------------------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             ------------------------------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence                                          001122568899999988566676789999998543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=3.9e-23  Score=226.63  Aligned_cols=321  Identities=9%  Similarity=0.044  Sum_probs=206.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++|||||+++++ +.||+|++||..+++....+..+...               ...+..+.|.|.         ++.
T Consensus        20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~---------------~~~v~~~~~SpD---------g~~   74 (723)
T 1xfd_A           20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REY   74 (723)
T ss_dssp             CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSE
T ss_pred             cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc---------------ccccceEEECCC---------CCE
Confidence            45599999998876 78999999999999887766544321               001334444442         788


Q ss_pred             EEEEECC---------CeEEEEEccCCeEEEEec--CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           89 LVLGTGG---------GDVLALAVSAGQLKWRLS--DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        89 l~~~~~~---------g~i~iwd~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                      |++++.+         +.|.+||+.+++.. .+.  .+|...+..++|+|||+.|++++. +.|++||+.+++..+....
T Consensus        75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEEEecCccceeecceeeEEEEECCCCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            8888774         77999999998762 222  345556899999999999999875 7999999998887666554


Q ss_pred             CCCCe------------------eEEEEccCCCEEEEEC--C----------------------------------eEEE
Q 008058          158 STKGI------------------SCMAVSSDGKMLATAA--G----------------------------------QLKT  183 (579)
Q Consensus       158 ~~~~v------------------~~l~~~p~g~~l~~~~--g----------------------------------~i~v  183 (579)
                      +...+                  .+++|+|||+.|++++  +                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            43333                  7899999999999875  2                                  7999


Q ss_pred             EECCCCeeeEEeecC------CCCEEEEEEecCCCEEEEEec---CCCeEEEEEcCCCccccceeEEeeecCceee---E
Q 008058          184 FNCSDHKKMQKFSGH------PGAVRFMTFSDNGKYVLSSAV---GERYIALWRTDGVKKQSASCVLAMEHPAVFM---D  251 (579)
Q Consensus       184 wd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l~s~s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~  251 (579)
                      ||+.+++....+..+      ...+..++|+|||+++++.+.   .+..|++||+.+++..   .+....+....-   .
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT---KKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE---EEEEEECSSCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce---EEEEeccCCEEeccCC
Confidence            999988866666654      567899999999998877643   2357999999887633   222222222111   2


Q ss_pred             eEEecCCcccCCCcEEEEE--EcCC------eEEEEE-CCCcee--ecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058          252 CRCIDNGGVDDAGLYVLAI--SETG------VCYIWY-GQNIEE--LRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~s~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      ...|+     |||+.|+..  ..+|      .|++|| ..+++.  ..........+.....++++++    .|+..+.+
T Consensus       310 ~~~~s-----pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~----~l~~~~~~  380 (723)
T 1xfd_A          310 EPVFS-----KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGN----KIYFLSTE  380 (723)
T ss_dssp             CCEEC-----TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTT----EEEEEESS
T ss_pred             CceEc-----CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCC----EEEEEEcC
Confidence            45676     999977754  4567      577777 344430  3322221111111112677777    55544333


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEec---CCCCcEEEeecCCcceeeccccce
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKILV---NSGEDINLNCSQDGVLLPMSQSLL  371 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---h~~~v~~~~~s~dg~~l~~s~s~d  371 (579)
                      +.  .....++...-.. ......+..   |...+..++|||||+++.++.+.+
T Consensus       381 ~~--~~~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          381 DL--PRRRQLYSANTVG-NFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             SC--TTCCEEEEECSST-TCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             CC--CcceEEEEEeCCC-CCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            10  0122333332110 001112222   566788999999999885555443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=1.6e-21  Score=204.73  Aligned_cols=274  Identities=10%  Similarity=0.051  Sum_probs=203.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC--CCCceeeEeecCCCCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP--LTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~v~  163 (579)
                      +.++++++.++.|.+||..+++++..+..++.  +.+++|+|||+++++++.|++|++||+  .+++.+.++. +...+.
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~  225 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEAR  225 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEE
T ss_pred             CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcc
Confidence            67788888999999999999999877754554  899999999999999999999999999  8899888888 455689


Q ss_pred             EEEEcc----CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------C-CCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          164 CMAVSS----DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------P-GAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       164 ~l~~~p----~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h----------~-~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      +++|+|    ||+++++++   ++|.+||..+++++.++..+          . ..+.++.++|+++.++++...++.|.
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~  305 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  305 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence            999999    999999887   89999999999998888642          2 36889999998887777777899999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEee--eccc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSS--SEDV  302 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~  302 (579)
                      +||+.+.+..   .+..+.+ ......+.|+     |+|+++++++ .+++|.+||..+++.+.........-.  ....
T Consensus       306 vvd~~~~~~l---~~~~i~~-~~~~~~~~~s-----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          306 LVNYKDIDNL---TVTSIGA-APFLHDGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             EEECTTSSSC---EEEEEEC-CSSCCCEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred             EEEecCCCcc---eeEEecc-CcCccCceEC-----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence            9999886543   2223333 3345566777     9999877665 589999999999987765432100000  0000


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCC------CCceeEEEecCCCCcEEEeecCCcceeecccc-------
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLL------LKPSFQKILVNSGEDINLNCSQDGVLLPMSQS-------  369 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s-------  369 (579)
                      +.+++.   ...++++..      ++.+.+..-..      ...+.+++.+|...+..++++|||++| .+++       
T Consensus       377 ~~p~~g---~~~~s~~~~------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l-~v~~~~~~~~~  446 (543)
T 1nir_A          377 VHPKYG---PVWSTSHLG------DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL-YVDTTFNPDAR  446 (543)
T ss_dssp             EETTTE---EEEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEE-EECCTTCSSHH
T ss_pred             CCCCCc---cEEEeccCC------CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcE-EEecCCCCCcc
Confidence            123322   133444321      22333322111      156788999998889999999999999 7665       


Q ss_pred             ceecccceeeee
Q 008058          370 LLKSKRGRYVQN  381 (579)
Q Consensus       370 ~d~~~~~w~~~~  381 (579)
                      .+++|.+|++.+
T Consensus       447 ~~~~v~v~d~~~  458 (543)
T 1nir_A          447 ISQSVAVFDLKN  458 (543)
T ss_dssp             HHTCEEEEETTC
T ss_pred             cCceEEEEECCC
Confidence            378999999853

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=1.2e-20  Score=187.73  Aligned_cols=243  Identities=13%  Similarity=0.089  Sum_probs=185.5

Q ss_pred             eEEEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            9 ILTSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ..++|+|+|+++++++.       ++.|.+||..+++....+.... .                  ...+.|.+.     
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~------------------~~~~~~s~d-----   99 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-K------------------PFGATINNT-----   99 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-C------------------CCSEEEETT-----
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-C------------------cceEEECCC-----
Confidence            34599999998888774       5689999999999887775321 1                  223444433     


Q ss_pred             cccCCcEEE-EEECCCeEEEEEccCCeEEEEecCCCCC--------CEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCc
Q 008058           82 RKLGSSLLV-LGTGGGDVLALAVSAGQLKWRLSDCHPG--------GVSAISFATHGSCIYSAG--ADGMVCEIDPLTGS  150 (579)
Q Consensus        82 ~~~~~~~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~--------~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~  150 (579)
                          +..++ ++..++.|.+||+.+++.+..+..++..        .+.+++|+|+|+++++++  .++.|.+||+.+++
T Consensus       100 ----g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~  175 (353)
T 3vgz_A          100 ----TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK  175 (353)
T ss_dssp             ----TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred             ----CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence                55444 4455789999999999987666432222        278999999999887776  47899999999999


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      .+..+..+...+.+++|+|+|+.+++++  +.|.+||..+++.+..+..    +...+..++|+|+++++++++..++.|
T Consensus       176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v  255 (353)
T 3vgz_A          176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEV  255 (353)
T ss_dssp             EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred             eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEE
Confidence            9888875666788999999999998887  8999999999998877764    556688999999999888877566999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccC
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~  291 (579)
                      .+||+.+++..     ........  ..+.|+     |+|+++++++ .++.|.+||..+++.+....
T Consensus       256 ~~~d~~~~~~~-----~~~~~~~~--~~~~~s-----~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          256 LVVDTRNGNIL-----AKVAAPES--LAVLFN-----PARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEEETTTCCEE-----EEEECSSC--CCEEEE-----TTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCcEE-----EEEEcCCC--ceEEEC-----CCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            99999887643     22222221  346666     8999777666 58999999999988776543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=3.8e-21  Score=195.79  Aligned_cols=225  Identities=15%  Similarity=0.118  Sum_probs=171.9

Q ss_pred             CCEEEEEeCC------CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           17 LDYFAICSGD------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        17 g~~las~s~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +..+++++.+      ++|++||...+ ....+..|...+..+.|+++                           +..|+
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spd---------------------------g~~la  194 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPD---------------------------GSKLA  194 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTT---------------------------SSEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCC---------------------------CCEEE
Confidence            6677777654      79999999744 34555545444444444443                           78899


Q ss_pred             EEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCceeeEeecCCCCeeE
Q 008058           91 LGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGM--VCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        91 ~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +++.++   .|++||+.+++.. .+ ..|...+.+++|+|||+.|+ +++.++.  |++||+.+++. ..+..|...+.+
T Consensus       195 ~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~  271 (415)
T 2hqs_A          195 YVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE  271 (415)
T ss_dssp             EEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred             EEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence            998875   8999999999875 33 45778999999999999877 6666654  99999988776 566778889999


Q ss_pred             EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC--CeEEEEEcCCCccccc
Q 008058          165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE--RYIALWRTDGVKKQSA  237 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d--~~i~vwd~~~~~~~~~  237 (579)
                      ++|+|||+.|++++   +  .|++||+.+++. ..+..|...+.+++|+|+|++|++++..+  ..|++||+.+++..  
T Consensus       272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--  348 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--  348 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE--
T ss_pred             eEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE--
Confidence            99999999888765   2  788899988764 45666778899999999999999887542  58999999887632  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCce
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIE  285 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~  285 (579)
                          .+..+. .+....|+     |+|++|++++.++   .|++||+..+.
T Consensus       349 ----~l~~~~-~~~~~~~s-----pdg~~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          349 ----VLSSTF-LDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             ----ECCCSS-SCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             ----EecCCC-CcCCeEEc-----CCCCEEEEEEcCCCccEEEEEECCCCc
Confidence                222222 55667787     9999999998877   89999987543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.89  E-value=5.5e-21  Score=188.68  Aligned_cols=266  Identities=12%  Similarity=0.039  Sum_probs=194.3

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccc--cccccccccccccccccCccceEEeeecccccccccCCcEE-EEEEC
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIAS--TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~   94 (579)
                      +++++++.+++|++||..+++....+.....  .+.                  .++|.+.         +..+ +++..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~~s~d---------g~~l~v~~~~   54 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM------------------VPMVAPG---------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC------------------CEEECTT---------SSEEEEEETT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc------------------ceEEcCC---------CCEEEEEeCC
Confidence            4789999999999999999998877753221  122                  3444332         5444 45556


Q ss_pred             CCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeecC
Q 008058           95 GGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      ++.|.+||+.+++.+..+..++    ...+.+++|+|+|+++++++            .++.|++||+.+++.+..+.. 
T Consensus        55 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-  133 (337)
T 1pby_B           55 SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-
T ss_pred             CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-
Confidence            7899999999998876654333    22577899999999998886            579999999999988877764 


Q ss_pred             CCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC----------------
Q 008058          159 TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER----------------  222 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~----------------  222 (579)
                      ...+.+++|+|+|++++++++.|++||+.+++.+..+..+... ..+.|+|++++++.++..++                
T Consensus       134 ~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence            4567889999999999988999999999999988777654411 12378999987766553333                


Q ss_pred             -------eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          223 -------YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       223 -------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                             .|.+||+.+++..    .............+.|+     |+|++++++  ++.|++||+.+++.+....    
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~s-----~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----  277 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMA----MREVRIMDVFYFSTAVN-----PAKTRAFGA--YNVLESFDLEKNASIKRVP----  277 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEE----EEEEEECSSCEEEEEEC-----TTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred             cccccccceEEEeCCCCCce----EeecCCCCCceeeEEEC-----CCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence                   4689999887632    12222333344567777     999999888  7999999987765432110    


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccc
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKR  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~  375 (579)
                                                                         .+ ..+.+++|+|||+++ ++++.++.++
T Consensus       278 ---------------------------------------------------~~-~~~~~~~~s~dg~~l-~~~~~~~~i~  304 (337)
T 1pby_B          278 ---------------------------------------------------LP-HSYYSVNVSTDGSTV-WLGGALGDLA  304 (337)
T ss_dssp             ---------------------------------------------------CS-SCCCEEEECTTSCEE-EEESBSSEEE
T ss_pred             ---------------------------------------------------CC-CceeeEEECCCCCEE-EEEcCCCcEE
Confidence                                                               00 135678999999988 6667799999


Q ss_pred             ceeee
Q 008058          376 GRYVQ  380 (579)
Q Consensus       376 ~w~~~  380 (579)
                      +|++.
T Consensus       305 v~d~~  309 (337)
T 1pby_B          305 AYDAE  309 (337)
T ss_dssp             EEETT
T ss_pred             EEECc
Confidence            99984

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=1e-21  Score=214.71  Aligned_cols=333  Identities=9%  Similarity=0.034  Sum_probs=204.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEE-EEeccccccccccccccccc-cccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQ-TEFADIASTETTSLYGNRLE-REHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|+  |+.+++++.|+ | +||+.+|+.+ ..+..+.....  .++..-. .......+.+++|.+.          ..+
T Consensus        32 ~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~~v~~~~~spd----------~~~   95 (706)
T 2z3z_A           32 QWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNA--LMPEGCKFQTTDAFPSFRTLDAGR----------GLV   95 (706)
T ss_dssp             EEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHT--TC-----------CCCEEEEETTT----------TEE
T ss_pred             cCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhh--hccchhccccccccCceeEEECCC----------CeE
Confidence            777  66777888888 8 9999999873 33322211000  0000000 0000134566777653          224


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----CceeeEeecCCCC---
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-----GSLLGKFRASTKG---  161 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~---  161 (579)
                      +++ .++.|++||+.+++.....  .+...+.+++|+|||++|+++ .|+.|++||+.+     ++.......+...   
T Consensus        96 ~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           96 VLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            444 5699999999998775333  466778999999999999885 689999999988     7766544433332   


Q ss_pred             -----------eeEEEEccCCCEEEEEC-----------------------------------CeEEEEECCCCeeeEEe
Q 008058          162 -----------ISCMAVSSDGKMLATAA-----------------------------------GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       162 -----------v~~l~~~p~g~~l~~~~-----------------------------------g~i~vwd~~~~~~~~~~  195 (579)
                                 +.+++|+|||++|++++                                   ..|++||+.+++.....
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~  251 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ  251 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred             ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence                       48999999999998874                                   57999999998765443


Q ss_pred             e--cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCccccceeEEeeecCce--eeEeEEecCCcccC--CC
Q 008058          196 S--GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQSASCVLAMEHPAV--FMDCRCIDNGGVDD--AG  264 (579)
Q Consensus       196 ~--~h~~~v~~l~~~~~~~~l~s~s~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~  264 (579)
                      .  .|...+.+++|+|||+++++++ .++     .|++||+.+++..  ..+....+...  .+..+.|+     |  +|
T Consensus       252 ~~~~~~~~~~~~~~spdg~~l~~~~-~~~~~~~~~v~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~s-----p~~dg  323 (706)
T 2z3z_A          252 TGEPKEKFLTNLSWSPDENILYVAE-VNRAQNECKVNAYDAETGRFV--RTLFVETDKHYVEPLHPLTFL-----PGSNN  323 (706)
T ss_dssp             CCSCTTCEEEEEEECTTSSEEEEEE-ECTTSCEEEEEEEETTTCCEE--EEEEEEECSSCCCCCSCCEEC-----TTCSS
T ss_pred             cCCCCceeEeeEEEECCCCEEEEEE-eCCCCCeeEEEEEECCCCcee--eEEEEccCCCeECccCCceee-----cCCCC
Confidence            2  4667899999999999998876 355     8999999987322  12222122111  12445676     8  99


Q ss_pred             cEEEEEEcCCeEEEEECC-CceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeE
Q 008058          265 LYVLAISETGVCYIWYGQ-NIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQ  343 (579)
Q Consensus       265 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (579)
                      +++++++.||.+++|.++ ++..+..+......+.....++++++    .++.++.+..  .....++...-.. . ..+
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~----~l~~~~~~~~--~~~~~l~~~d~~~-~-~~~  395 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT----RLYFESTEAS--PLERHFYCIDIKG-G-KTK  395 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS----EEEEEESSSC--TTCBEEEEEETTC-C-CCE
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC----EEEEEecCCC--CceEEEEEEEcCC-C-Cce
Confidence            999999999999999876 45544444332222221112567766    4444433210  0012344433211 1 122


Q ss_pred             EEecCCCCcEEEeecCCcceeeccccce---ecccceeeee
Q 008058          344 KILVNSGEDINLNCSQDGVLLPMSQSLL---KSKRGRYVQN  381 (579)
Q Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~~s~s~d---~~~~~w~~~~  381 (579)
                      .+ .|...+.+++|||||+++.++++.+   ..+++|++.+
T Consensus       396 ~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          396 DL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             ES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             ec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            22 3666789999999999884444433   4588998753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=7.5e-21  Score=183.67  Aligned_cols=221  Identities=11%  Similarity=0.058  Sum_probs=157.0

Q ss_pred             EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEE
Q 008058           23 CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALA  102 (579)
Q Consensus        23 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd  102 (579)
                      ++.|++|++||..+++.... ..+...+                  .++.|.+.         +.++++++ ++.|++||
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~-~~~~~~v------------------~~~~~spd---------g~~l~~~~-~~~i~~~d   68 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVV-WQTPELF------------------EAPNWSPD---------GKYLLLNS-EGLLYRLS   68 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEE-EEESSCC------------------EEEEECTT---------SSEEEEEE-TTEEEEEE
T ss_pred             CCcceeEEEEeCCCCceeee-ccCCcce------------------EeeEECCC---------CCEEEEEc-CCeEEEEe
Confidence            45689999999998887643 3333333                  34555443         67777776 88999999


Q ss_pred             ccC-CeEEEEecCCC-CCCEEEEEEccCCCEEEEEe--CCCc--EEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEE-
Q 008058          103 VSA-GQLKWRLSDCH-PGGVSAISFATHGSCIYSAG--ADGM--VCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA-  175 (579)
Q Consensus       103 ~~~-~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~--~dg~--v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~-  175 (579)
                      +.+ ++..... ..| ...+.+++|+|+|++|++++  .++.  |..|++.+++ ...+..+ ..+.+++|+|+|+.++ 
T Consensus        69 ~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~  145 (297)
T 2ojh_A           69 LAGDPSPEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTY  145 (297)
T ss_dssp             SSSCCSCEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEE
T ss_pred             CCCCCCceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEE
Confidence            999 7765443 344 47889999999999999998  3344  4455555554 3444433 3589999999999887 


Q ss_pred             EEC--CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEe
Q 008058          176 TAA--GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       176 ~~~--g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  252 (579)
                      ++.  +.+++|++.. +.....+..|...+.++.|+|+++++++++..++.+++|++.....    ....+..+...+..
T Consensus       146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~  221 (297)
T 2ojh_A          146 CGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS----SVERITDSAYGDWF  221 (297)
T ss_dssp             EEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS----CEEECCCCSEEEEE
T ss_pred             EECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC----CcEEEecCCcccCC
Confidence            443  7888887532 2344567778889999999999999888775688999999863221    12334444556667


Q ss_pred             EEecCCcccCCCcEEEEEEcC-----------CeEEEEECCCc
Q 008058          253 RCIDNGGVDDAGLYVLAISET-----------GVCYIWYGQNI  284 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~  284 (579)
                      ..|+     |+|++|++++.+           +.|++||++++
T Consensus       222 ~~~s-----~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          222 PHPS-----PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             EEEC-----TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             eEEC-----CCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            7887     999999998876           46888887654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3e-20  Score=183.84  Aligned_cols=272  Identities=14%  Similarity=0.155  Sum_probs=178.4

Q ss_pred             EEEEEeCCCcEEEEECC-CCe--EEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           19 YFAICSGDARIKIWDTL-KGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      .+++++.|+.|++|++. ++.  ....+. +..                  ...+++|.+.         +..+++++.+
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~------------------~~~~~~~spd---------g~~l~~~~~~   58 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVD-VPG------------------QVQPMVVSPD---------KRYLYVGVRP   58 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSS------------------CCCCEEECTT---------SSEEEEEETT
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEe-cCC------------------CCceEEECCC---------CCEEEEeecC
Confidence            34444779999999985 343  222221 222                  2334555443         6778888876


Q ss_pred             -CeEEEEEcc--CCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCC---CCceeeEeecCCCCeeEEE
Q 008058           96 -GDVLALAVS--AGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPL---TGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        96 -g~i~iwd~~--~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~---~~~~~~~~~~~~~~v~~l~  166 (579)
                       +.|.+|++.  +++.  +..+ ..+ ..+.+++|+|+|+++++++. ++.|++||+.   .++....+.. ...+.+++
T Consensus        59 ~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~  135 (343)
T 1ri6_A           59 EFRVLAYRIAPDDGALTFAAES-ALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSAN  135 (343)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCE
T ss_pred             CCeEEEEEecCCCCceeecccc-ccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEE
Confidence             899999998  5553  2233 223 37899999999998877664 8899999994   3344455543 34688999


Q ss_pred             EccCCCEEEEEC---CeEEEEECCC-CeeeE----Eeec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--Cccc
Q 008058          167 VSSDGKMLATAA---GQLKTFNCSD-HKKMQ----KFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--VKKQ  235 (579)
Q Consensus       167 ~~p~g~~l~~~~---g~i~vwd~~~-~~~~~----~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~--~~~~  235 (579)
                      |+|+|+++++++   +.|++||+.+ ++...    .+.. ....+..++|+|+++++++++..++.|.+|++..  ++..
T Consensus       136 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~  215 (343)
T 1ri6_A          136 ISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE  215 (343)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             ECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence            999999877765   8999999987 64432    2332 3457889999999998877765789999999964  3221


Q ss_pred             cceeEEeeecC---ceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC--ceeecccCCceEEeeecccCcccccc
Q 008058          236 SASCVLAMEHP---AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN--IEELRNTKATKILSSSEDVNSKSQKS  309 (579)
Q Consensus       236 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (579)
                      ...........   ......+.|+     |+|++|+++. .++.|.+||+..  +.. .       .             
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~i~~s-----~dg~~l~v~~~~~~~i~v~d~~~~~~~~-~-------~-------------  269 (343)
T 1ri6_A          216 CVQTLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVL-S-------K-------------  269 (343)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCE-E-------E-------------
T ss_pred             EEeeccccCccccccCCccceEEC-----CCCCEEEEEecCCCEEEEEEEcCCCCce-E-------E-------------
Confidence            00011111111   1233456777     9998887555 689999999752  110 0       0             


Q ss_pred             cchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       310 ~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                      ...+..+. .+..++|+|||++|.+++..++.+.+|++.
T Consensus       270 --------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          270 --------------------------------EGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             --------------------------------EEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             --------------------------------eeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence                                            00111122 267789999999884555578999999774

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=4.6e-20  Score=181.83  Aligned_cols=238  Identities=9%  Similarity=0.048  Sum_probs=169.1

Q ss_pred             EEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+|||+++++++. ++.|.+||..+++. ...+..+..+...                  +.|.+.         +.
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~------------------~~~s~d---------g~   96 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD------------------VDITPD---------DQ   96 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC------------------EEECTT---------SS
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc------------------eEECCC---------CC
Confidence            5699999997777765 88999999999886 5555433322222                  344332         67


Q ss_pred             EEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCc-EEEEeCCCCcee----eEeecC
Q 008058           88 LLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGM-VCEIDPLTGSLL----GKFRAS  158 (579)
Q Consensus        88 ~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~-v~iwd~~~~~~~----~~~~~~  158 (579)
                      +++++..++   .|.+||+.+++.+..+.  +.....+++|+|+|++++++ ..++. |.+|++.....+    ......
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  174 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG  174 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC
Confidence            777555553   89999999999876653  33567999999999866655 45588 999998754332    122233


Q ss_pred             CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...+.+++|+|+|+++++++   +.|++||+.+++.   +..+..+ ..+..++|+|+|+++++++..++.|.+||+.++
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            45689999999999665554   7999999999887   7777744 567899999999988777656789999999887


Q ss_pred             ccccceeEEeeecC----ce---eeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCce
Q 008058          233 KKQSASCVLAMEHP----AV---FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~  285 (579)
                      +..   .+......    ..   ....+.|+     |+|++|++++. ++.|.+||+.+..
T Consensus       254 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          254 TLS---FVKSFGHGLLIDPRPLFGANQMALN-----KTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEE---EEEEEECCCCCCCGGGTTCCCEEEC-----TTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cee---eecccccccccCCCCcccccceEEC-----CCCCEEEEecCCCCcEEEEEecCCc
Confidence            642   11111111    11   11335676     99999877665 6699999987654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=1.1e-19  Score=179.81  Aligned_cols=239  Identities=11%  Similarity=0.124  Sum_probs=164.2

Q ss_pred             EEEEccCCCEEEEEeCC-CcEEEEECC--CCeEE--EEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           10 LTSFSPALDYFAICSGD-ARIKIWDTL--KGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fs~dg~~las~s~d-g~i~vwd~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +++|+|+|++|++++.+ +.|.+|++.  ++...  ..+..+.                   ....++|.+.        
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~s~d--------   94 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-------------------SLTHISTDHQ--------   94 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-------------------CCSEEEECTT--------
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-------------------CCcEEEEcCC--------
Confidence            45999999999998876 999999987  55532  3332211                   2344555543        


Q ss_pred             CCcEEEEEEC-CCeEEEEEcc---CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC-Cceee----E
Q 008058           85 GSSLLVLGTG-GGDVLALAVS---AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT-GSLLG----K  154 (579)
Q Consensus        85 ~~~~l~~~~~-~g~i~iwd~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~----~  154 (579)
                       +..+++++. ++.|.+||+.   +.+....+ . ....+.+++|+|+|+++++++ .++.|++||+.+ ++...    .
T Consensus        95 -g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  171 (343)
T 1ri6_A           95 -GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE  171 (343)
T ss_dssp             -SSEEEEEETTTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE
T ss_pred             -CCEEEEEecCCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccc
Confidence             666666654 7889999994   33444333 2 334689999999999888887 899999999987 65432    2


Q ss_pred             eecC-CCCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEee----cC--CCCEEEEEEecCCCEEEEEecC
Q 008058          155 FRAS-TKGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFS----GH--PGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       155 ~~~~-~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~~~--~~~~~----~h--~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      +..+ ...+.+++|+|+|+++++++   +.|.+||+..  ++.  ...+.    ++  ...+..++|+|+++++++++..
T Consensus       172 ~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          172 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             cccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            2322 34788999999999776543   8999999953  432  22222    11  2356789999999988866657


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEEC--CCce
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYG--QNIE  285 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~~~  285 (579)
                      ++.|.+|++...... ...+........ ...+.|+     |+|++|++++ .++.+.+|++  ++++
T Consensus       252 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          252 ASLITVFSVSEDGSV-LSKEGFQPTETQ-PRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             TTEEEEEEECTTSCC-EEEEEEEECSSS-CCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCEEEEEEEcCCCCc-eEEeeeecCCCc-cceEEEC-----CCCCEEEEecCCCCeEEEEEEcCCCce
Confidence            899999999832111 112333333333 5567777     9999998888 5899999954  4553

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=8.2e-21  Score=216.16  Aligned_cols=267  Identities=11%  Similarity=-0.025  Sum_probs=186.2

Q ss_pred             cEEEEEECCCeEEEEEccC-CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------
Q 008058           87 SLLVLGTGGGDVLALAVSA-GQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------  157 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------  157 (579)
                      .++++++.+|.+.+|.+.. +.....+ ..|. .+...+|+|||++++++ .++.|++||+... .+..+..        
T Consensus       215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~  290 (1045)
T 1k32_A          215 RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPED  290 (1045)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCS
T ss_pred             EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccc
Confidence            4555666778888888764 3333233 3343 46677999999998887 5899999998443 3335544        


Q ss_pred             ---CCCCeeEEEEc-cCCCEEEEEC-CeEEEEECCCCeeeEEeecCCC-CEEEEEEecCCCEEEEEecCCCeEE-EEEcC
Q 008058          158 ---STKGISCMAVS-SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPG-AVRFMTFSDNGKYVLSSAVGERYIA-LWRTD  230 (579)
Q Consensus       158 ---~~~~v~~l~~~-p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~s~~d~~i~-vwd~~  230 (579)
                         |...+.+++|+ |||+.+++++ +.|++|++.+++.. .+..|.. .+..++|+ +|+.+++++ .++.+. +|++.
T Consensus       291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s-~~~~l~~~~d~~  367 (1045)
T 1k32_A          291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT-REGDFLGIYDYR  367 (1045)
T ss_dssp             EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE-TTEEEEEEEETT
T ss_pred             ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE-CCCceEEEEECC
Confidence               23468999999 9999999887 99999999887644 4667777 89999999 999999987 577888 89988


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCccccccc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSA  310 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (579)
                      .++..      .+..+...+..+.|+     |||++|++++.++.|++||+.+++...........+... .|+|+++  
T Consensus       368 ~~~~~------~l~~~~~~~~~~~~S-----pDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~-~~SpDG~--  433 (1045)
T 1k32_A          368 TGKAE------KFEENLGNVFAMGVD-----RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF-TISDNSR--  433 (1045)
T ss_dssp             TCCEE------ECCCCCCSEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE-EECTTSC--
T ss_pred             CCCce------EecCCccceeeeEEC-----CCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce-EECCCCC--
Confidence            76532      222344456677787     999999999999999999999887654332221111111 2678887  


Q ss_pred             chhhhhccccc--e-ecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          311 TAAIFAAKLQD--I-VKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       311 ~~~i~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                        .++.++.++  . ....+..+.+..-. .. ....+..|...+..++|+|||++| +.++.++..+.|+.
T Consensus       434 --~la~~~~~~~~~~~~~~~~~i~l~d~~-~g-~~~~l~~~~~~~~~~~~spdG~~l-~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          434 --FIAYGFPLKHGETDGYVMQAIHVYDME-GR-KIFAATTENSHDYAPAFDADSKNL-YYLSYRSLDPSPDR  500 (1045)
T ss_dssp             --EEEEEEEECSSTTCSCCEEEEEEEETT-TT-EEEECSCSSSBEEEEEECTTSCEE-EEEESCCCCCEECS
T ss_pred             --eEEEEecCccccccCCCCCeEEEEECC-CC-cEEEeeCCCcccCCceEcCCCCEE-EEEecccCCcCcch
Confidence              666655432  0 00012334443321 12 245666788888999999999999 77777777787865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=5.1e-20  Score=209.61  Aligned_cols=242  Identities=12%  Similarity=0.037  Sum_probs=182.3

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEee-ecccccccccCCcE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL-SVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~   88 (579)
                      ..+|||||++|+++. ++.|.+||....... .+..+..... ..+      ......+..+.|. |.         +..
T Consensus       249 ~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~-~~~------~~~~~~v~~~~~S~pd---------G~~  310 (1045)
T 1k32_A          249 PRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESP-EDR------IISIPSKFAEDFSPLD---------GDL  310 (1045)
T ss_dssp             EEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBC-CSE------EEECGGGGEEEEEECG---------GGC
T ss_pred             eeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccccc-ccc------cccccccceeeecCCC---------CCE
Confidence            459999999999885 899999999544433 4443211000 000      0012245677887 54         566


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCC-CEEEEEEccCCCEEEEEeCCCcEE-EEeCCCCceeeEeecCCCCeeEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPG-GVSAISFATHGSCIYSAGADGMVC-EIDPLTGSLLGKFRASTKGISCMA  166 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~l~s~~~dg~v~-iwd~~~~~~~~~~~~~~~~v~~l~  166 (579)
                      +++++ ++.|.+|+..+++.. .+ ..|.. .+.+++|+ ||+.+++++.++.+. +||+.+++.. .+..|...+.+++
T Consensus       311 la~~~-~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~  385 (1045)
T 1k32_A          311 IAFVS-RGQAFIQDVSGTYVL-KV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMG  385 (1045)
T ss_dssp             EEEEE-TTEEEEECTTSSBEE-EC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEE
T ss_pred             EEEEE-cCEEEEEcCCCCceE-Ec-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeE
Confidence            77776 889999999988764 33 45777 89999999 999999998888898 9998877654 3447778999999


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC---------CeEEEEEcCCCccc
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---------RYIALWRTDGVKKQ  235 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d---------~~i~vwd~~~~~~~  235 (579)
                      |+|||++|++++  +.|++||+.+++....+.+|...+.+++|+|||++|++++..+         +.|++||+.+++. 
T Consensus       386 ~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-  464 (1045)
T 1k32_A          386 VDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-  464 (1045)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-
T ss_pred             ECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-
Confidence            999999999887  7999999999988877778999999999999999998887422         4899999988652 


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                           ..+..+........|+     |+|++|++++.++...+|+.....
T Consensus       465 -----~~l~~~~~~~~~~~~s-----pdG~~l~~~s~~~~~~~~~~~~~~  504 (1045)
T 1k32_A          465 -----FAATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLN  504 (1045)
T ss_dssp             -----EECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSC
T ss_pred             -----EEeeCCCcccCCceEc-----CCCCEEEEEecccCCcCcchhccc
Confidence                 2333334444556777     999999999998888888865443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=5.5e-20  Score=177.55  Aligned_cols=231  Identities=11%  Similarity=0.062  Sum_probs=164.9

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..|  .+++|+|||++|++++ ++.|++||+.+ ++.......+.                 ...+.++.|.+.      
T Consensus        42 ~~v--~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spd------   95 (297)
T 2ojh_A           42 ELF--EAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-----------------TICNNDHGISPD------   95 (297)
T ss_dssp             SCC--EEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-----------------CCBCSCCEECTT------
T ss_pred             cce--EeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-----------------cccccceEECCC------
Confidence            456  4569999999999987 78999999998 77665443321                 123344555543      


Q ss_pred             ccCCcEEEEEEC--CCe--EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCC-CCceeeEee
Q 008058           83 KLGSSLLVLGTG--GGD--VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPL-TGSLLGKFR  156 (579)
Q Consensus        83 ~~~~~~l~~~~~--~g~--i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~-~~~~~~~~~  156 (579)
                         +..+++++.  ++.  |..|+..++... .+ . +...+..++|+|+|++|+ +++.++.+++|++. .+.....+.
T Consensus        96 ---g~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  169 (297)
T 2ojh_A           96 ---GALYAISDKVEFGKSAIYLLPSTGGTPR-LM-T-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT  169 (297)
T ss_dssp             ---SSEEEEEECTTTSSCEEEEEETTCCCCE-EC-C-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             ---CCEEEEEEeCCCCcceEEEEECCCCceE-Ee-e-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc
Confidence               777888883  344  555555555532 33 2 233599999999999877 77789999999853 233445566


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------C
Q 008058          157 ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------R  222 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d----------~  222 (579)
                      .+...+.+++|+|+|+.++.++   +.+.+|++. .+..+..+..|...+..+.|+|++++|++++..+          +
T Consensus       170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred             cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence            6778899999999999877654   788888876 4556777888888899999999999998887421          5


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                      .|++||+.+++..   .+.....+...+..+.|+     |+|++|++++.+.
T Consensus       250 ~l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVE---TLFDLFGGQGTMNSPNWS-----PDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCE---EEEEEEESTTTSCSCCBC-----TTSSEEEEEEECC
T ss_pred             EEEEEecCCCCce---eeeccCCCCcccccceEC-----CCCCEEEEEEecc
Confidence            6999999887643   333333334445556676     9999999887754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=7.4e-20  Score=181.59  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=175.4

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      +++++++.++++++.+++|++||..+++....+..+..                 .....++|.+.         +..++
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~s~d---------g~~~~   58 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-----------------FGPGTAMMAPD---------NRTAY   58 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-----------------CSSCEEEECTT---------SSEEE
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-----------------CCCceeEECCC---------CCEEE
Confidence            37889999999999999999999999998877753320                 01223444332         55444


Q ss_pred             -EEECCCeEEEEEccCCeEEEEecCCC-----CCCEEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCce-
Q 008058           91 -LGTGGGDVLALAVSAGQLKWRLSDCH-----PGGVSAISFATHGSCIYSAGAD------------GMVCEIDPLTGSL-  151 (579)
Q Consensus        91 -~~~~~g~i~iwd~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~~~d------------g~v~iwd~~~~~~-  151 (579)
                       ++..++.|.+||+.+++....+...+     ...+.+++|+|+|+++++++.+            +.|.+||+.+++. 
T Consensus        59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence             45567899999999998876654333     2337889999999999998865            8999999988543 


Q ss_pred             --eeEeecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCC------------------------------
Q 008058          152 --LGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHP------------------------------  199 (579)
Q Consensus       152 --~~~~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~------------------------------  199 (579)
                        +..+. +...+.+++|+|+|+ ++++++.|++||..+++.+..+..+.                              
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             ceeeecc-CCCcccceeECCCCc-EEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence              33444 334688999999999 66677779999999988776664331                              


Q ss_pred             --------------------------------------CCEEEEEEec-CCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          200 --------------------------------------GAVRFMTFSD-NGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       200 --------------------------------------~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                                                            ..+..++|+| ++++++++   ++.|.+||+.+++..     
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~-----  288 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLI-----  288 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEE-----
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEE-----
Confidence                                                  1345667789 99988876   679999999887633     


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ..+..... ...+.|+     |+|++|++++.++.|++||.++++.+..+
T Consensus       289 ~~~~~~~~-~~~~~~s-----~dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          289 KAANLDHT-YYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEEECSSC-CCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCC-ccceEEC-----CCCCEEEEecCCCeEEEEeccccceeeee
Confidence            22222222 3456776     89999998888999999999998876544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=6.7e-19  Score=174.86  Aligned_cols=242  Identities=11%  Similarity=0.111  Sum_probs=161.0

Q ss_pred             EEEEccCCCEEEEEeC---CCcEEEEECCCCeE--EEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           10 LTSFSPALDYFAICSG---DARIKIWDTLKGQV--QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fs~dg~~las~s~---dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++|+|||+ |++++.   ++.|.+|++.++..  +..+..+...+                  ..++|.+.        
T Consensus        44 ~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p------------------~~~a~spd--------   96 (347)
T 3hfq_A           44 YLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP------------------AYVAVDEA--------   96 (347)
T ss_dssp             CEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC------------------SEEEEETT--------
T ss_pred             eEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC------------------EEEEECCC--------
Confidence            359999999 555543   68999999987763  23222222222                  33444433        


Q ss_pred             CCcEEEEEE-CCCeEEEEEcc-CCe--EEEEecC-C-------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CCce
Q 008058           85 GSSLLVLGT-GGGDVLALAVS-AGQ--LKWRLSD-C-------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL-TGSL  151 (579)
Q Consensus        85 ~~~~l~~~~-~~g~i~iwd~~-~~~--~~~~~~~-~-------h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~  151 (579)
                       ++.|++++ .++.|.+|++. .+.  .+..+.. +       +...+.+++|+|+|+.+++...++.|++||+. +++.
T Consensus        97 -g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A           97 -RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             -TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             -CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence             77777777 67899999996 333  2222211 1       22358999999999966666678899999998 5543


Q ss_pred             ee--EeecCC-CCeeEEEEccCCCEEEEEC---CeEEEEECCC--Cee--eEEeecCC------CCEEEEEEecCCCEEE
Q 008058          152 LG--KFRAST-KGISCMAVSSDGKMLATAA---GQLKTFNCSD--HKK--MQKFSGHP------GAVRFMTFSDNGKYVL  215 (579)
Q Consensus       152 ~~--~~~~~~-~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~--~~~--~~~~~~h~------~~v~~l~~~~~~~~l~  215 (579)
                      ..  .+..+. ..+..++|+|||+++++++   +.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+
T Consensus       176 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          176 SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEE
T ss_pred             EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEE
Confidence            32  223332 3678999999999776654   7999999874  543  33333332      3488999999999886


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEE--ECCCcee
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW--YGQNIEE  286 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw--d~~~~~~  286 (579)
                      +++..++.|.+|++.....  ...+.....+......+.|+     |+|++|++++. ++.|.+|  |.++++.
T Consensus       256 v~~~~~~~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~s-----pdg~~l~v~~~~~~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGH--LTLIQQISTEGDFPRDFDLD-----PTEAFVVVVNQNTDNATLYARDLTSGKL  322 (347)
T ss_dssp             EEEETTTEEEEEEECGGGC--EEEEEEEECSSSCCCEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EEeCCCCEEEEEEECCCCc--EEEeEEEecCCCCcCeEEEC-----CCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence            6655789999999974321  11333333333445567777     99999988876 4899999  4555654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.85  E-value=6.9e-20  Score=201.33  Aligned_cols=281  Identities=7%  Similarity=-0.005  Sum_probs=195.0

Q ss_pred             ccceEEeeecccccccccCCcEEEEEEC-CC-----eEEEEEccCCeEEEEecCCCC-----------------------
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG-----DVLALAVSAGQLKWRLSDCHP-----------------------  117 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g-----~i~iwd~~~~~~~~~~~~~h~-----------------------  117 (579)
                      ....+.|.+.         ++.|++++. ++     .|++||+.+++....+ ..+.                       
T Consensus        38 ~~~~~~~Spd---------G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (741)
T 2ecf_A           38 TLMKPKVAPD---------GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAA  107 (741)
T ss_dssp             CCEEEEECTT---------SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------C
T ss_pred             CCCCceEecC---------CCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhcc
Confidence            3556777664         788999888 88     8999999999876444 2232                       


Q ss_pred             -CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeE
Q 008058          118 -GGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQ  193 (579)
Q Consensus       118 -~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~  193 (579)
                       ..|.+++|+|||++|++++. +.|++||+.++.  ....+..+...+.+++|+|||++|+.++ +.|++||+.+++...
T Consensus       108 ~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          108 MTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE
T ss_pred             ccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE
Confidence             23789999999999999876 999999998873  4455666778899999999999999888 899999999987665


Q ss_pred             EeecCCCC----------------EEEEEEecCCCEEEEEecCCC---------------------------------eE
Q 008058          194 KFSGHPGA----------------VRFMTFSDNGKYVLSSAVGER---------------------------------YI  224 (579)
Q Consensus       194 ~~~~h~~~----------------v~~l~~~~~~~~l~s~s~~d~---------------------------------~i  224 (579)
                      ....+...                +..+.|+|||++|++++. |+                                 .|
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~-d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI-DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE-ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE-cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            44444432                477999999999998873 44                                 78


Q ss_pred             EEEEcCC-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-----CCeEEEEECCCceeecccCCceEE--
Q 008058          225 ALWRTDG-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-----TGVCYIWYGQNIEELRNTKATKIL--  296 (579)
Q Consensus       225 ~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~--  296 (579)
                      .+||+.+ ++..   .+.....+...+..+.|      |||++|++++.     ++.|++||+.+++...........  
T Consensus       266 ~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~------pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          266 GVISPAEQAQTQ---WIDLGKEQDIYLARVNW------RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWV  336 (741)
T ss_dssp             EEECSSTTCCCE---EECCCSCSSEEEEEEEE------EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCceE---EecCCCCcceEEEEEEe------CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcC
Confidence            8899887 6532   11111122333444444      58898887764     568999999988754432211100  


Q ss_pred             -eeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEE-eecCCcceeecccccee--
Q 008058          297 -SSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINL-NCSQDGVLLPMSQSLLK--  372 (579)
Q Consensus       297 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~-~~s~dg~~l~~s~s~d~--  372 (579)
                       ......|+++++    .+++++.++.     ..++...-.  .. ...+..|...+..+ .|||||+.+.++++.++  
T Consensus       337 ~~~~~~~~spdg~----~~~~~~~~g~-----~~l~~~~~~--~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~  404 (741)
T 2ecf_A          337 PLHNSLRFLDDGS----ILWSSERTGF-----QHLYRIDSK--GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR  404 (741)
T ss_dssp             CCCSCCEECTTSC----EEEEECTTSS-----CEEEEECSS--SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred             CcCCceEECCCCe----EEEEecCCCc-----cEEEEEcCC--CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence             001223677766    6666666552     233333211  12 55677787788887 59999998746666666  


Q ss_pred             cccceeee
Q 008058          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+++|.+.
T Consensus       405 ~~~l~~~~  412 (741)
T 2ecf_A          405 ESQIYAVP  412 (741)
T ss_dssp             CBEEEEEE
T ss_pred             eEEEEEEE
Confidence            88999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=1e-19  Score=185.95  Aligned_cols=210  Identities=12%  Similarity=0.041  Sum_probs=152.4

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ++++++++.++++++.|+ ++||+........  ...........+.+. ..-+....+.+++|.+.         +.+|
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spd---------g~~l  107 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQN--KPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCD---------NLTL  107 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCC--CTTCCTTCEEECCCC-EEECCSSCEEEEEECTT---------SCEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhc--ccccCcccccccCcc-ccccCCCcccEEEEcCC---------CCEE
Confidence            349999999999999888 8998754211000  000000000000000 00112345778888775         6677


Q ss_pred             E----EEECCCeEEEEEccCC--------eE--EEEecCCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058           90 V----LGTGGGDVLALAVSAG--------QL--KWRLSDCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        90 ~----~~~~~g~i~iwd~~~~--------~~--~~~~~~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                      +    +|+.|+.|++||+.++        +.  ......+|...|++++|+|+ +.+|++++.||+|++||++++..+..
T Consensus       108 av~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee
Confidence            7    6777899999999765        11  12445679999999999998 78999999999999999999877777


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-------CCEEEEEEecCCCEEEEEecCCC---
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-------GAVRFMTFSDNGKYVLSSAVGER---  222 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~l~s~s~~d~---  222 (579)
                      ..+|...|++++|+|+|++|++|+  |.|++||.+ ++....+..|.       ..|.++.|++++.++++.+..||   
T Consensus       188 ~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~  266 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLE  266 (434)
T ss_dssp             EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSS
T ss_pred             ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccC
Confidence            777888999999999999999998  899999998 55566665442       37999999999988876655554   


Q ss_pred             ---eEEEEEcCCCc
Q 008058          223 ---YIALWRTDGVK  233 (579)
Q Consensus       223 ---~i~vwd~~~~~  233 (579)
                         .+++|+++..+
T Consensus       267 ~~~~v~i~~l~~~~  280 (434)
T 2oit_A          267 TSPDVVMALLPKKE  280 (434)
T ss_dssp             SCCEEEEEECCCTT
T ss_pred             CCCceEEEEeccCC
Confidence               38999998753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=4.1e-18  Score=169.11  Aligned_cols=233  Identities=12%  Similarity=0.091  Sum_probs=154.9

Q ss_pred             CcEEEEEEC---CCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC-CCc--eeeEee
Q 008058           86 SSLLVLGTG---GGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL-TGS--LLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~---~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~-~~~--~~~~~~  156 (579)
                      +. +++++.   ++.|.+|++.+++.  +..+ ..+...+..++|+|+|++|++++ .++.|.+||+. ++.  .+..+.
T Consensus        51 g~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           51 DC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             CE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             Ce-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence            66 555544   57899999987764  2222 34667889999999999988887 78999999995 332  333332


Q ss_pred             cC---------CCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCeee--EEeecC-CCCEEEEEEecCCCEEEEEecCC
Q 008058          157 AS---------TKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKKM--QKFSGH-PGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       157 ~~---------~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-~~~~~--~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      ..         ...+.+++|+|+|+++++..  +.|++|++. +++..  ..+..+ ...+..++|+|||+++++++..+
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~  208 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS  208 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC
Confidence            21         12488999999999555554  799999998 55432  223332 23678899999999888776678


Q ss_pred             CeEEEEEcCC--CccccceeEEeeec-C-----ceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceeecccCC
Q 008058          222 RYIALWRTDG--VKKQSASCVLAMEH-P-----AVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       222 ~~i~vwd~~~--~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      +.|.+|++..  ++..   ....... +     ......+.|+     |+|++|+++ ..++.|.+|++.....+.    
T Consensus       209 ~~v~v~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~i~~s-----pdG~~l~v~~~~~~~v~v~~~~~~g~~~----  276 (347)
T 3hfq_A          209 SQIASLKYDTQTGAFT---QLGIVKTIPADYTAHNGAAAIRLS-----HDGHFLYVSNRGYNTLAVFAVTADGHLT----  276 (347)
T ss_dssp             TEEEEEEEETTTTEEE---EEEEEESSCTTCCSCCEEEEEEEC-----TTSCEEEEEEETTTEEEEEEECGGGCEE----
T ss_pred             CEEEEEEecCCCCceE---EeeeeeecCCCCCCCCcceeEEEC-----CCCCEEEEEeCCCCEEEEEEECCCCcEE----
Confidence            9999999875  3211   1112211 1     1345667777     999988554 558999999975211000    


Q ss_pred             ceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeecccccee
Q 008058          293 TKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~  372 (579)
                         .                                             ...+..+...+..++|+|||++|.+++..++
T Consensus       277 ---~---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  308 (347)
T 3hfq_A          277 ---L---------------------------------------------IQQISTEGDFPRDFDLDPTEAFVVVVNQNTD  308 (347)
T ss_dssp             ---E---------------------------------------------EEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred             ---E---------------------------------------------eEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence               0                                             0011123335678999999998844445568


Q ss_pred             cccceeee
Q 008058          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      .+.+|++.
T Consensus       309 ~v~v~~~d  316 (347)
T 3hfq_A          309 NATLYARD  316 (347)
T ss_dssp             EEEEEEEC
T ss_pred             cEEEEEEe
Confidence            89999763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=5.7e-19  Score=174.13  Aligned_cols=240  Identities=10%  Similarity=0.030  Sum_probs=174.9

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|||++++ +++.++.|.+||..+++....+.......             .......+.|.+.         +..
T Consensus        38 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~d---------g~~   95 (337)
T 1pby_B           38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-------------RVKSLFGAALSPD---------GKT   95 (337)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE-------------EEECTTCEEECTT---------SSE
T ss_pred             ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc-------------ccccccceEECCC---------CCE
Confidence            449999998765 45557899999999998877665321000             0011234445442         667


Q ss_pred             EEEEE------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           89 LVLGT------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                      ++++.            .++.|.+||+.+++.+..+..  ...+.+++|+|+|++++++  ++.|++||+.+++....+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~  171 (337)
T 1pby_B           96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred             EEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee
Confidence            77776            579999999999988766532  3467889999999988888  6889999999998887776


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC---C-----------------------eEEEEECCCCeee-EEeecCCCCEEEEEEec
Q 008058          157 ASTKGISCMAVSSDGKMLATAA---G-----------------------QLKTFNCSDHKKM-QKFSGHPGAVRFMTFSD  209 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~---g-----------------------~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~  209 (579)
                      .+.. ...+.|+|+|+.++.++   +                       .|.+||+.+++.. ..+..+...+.+++|+|
T Consensus       172 ~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~  250 (337)
T 1pby_B          172 IQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP  250 (337)
T ss_dssp             STTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECT
T ss_pred             cccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECC
Confidence            5441 11237899998776554   2                       4789999998764 33456677888999999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      ++++++++   ++.|.+||+.+++..     ..+.... ....+.|+     |+|++|++++.++.|++||+.+++.+..
T Consensus       251 dg~~l~~~---~~~v~~~d~~~~~~~-----~~~~~~~-~~~~~~~s-----~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          251 AKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYYSVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             TSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEe---CCeEEEEECCCCcCc-----ceecCCC-ceeeEEEC-----CCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            99998876   589999999887633     2222222 23456676     9999999999999999999999877654


Q ss_pred             c
Q 008058          290 T  290 (579)
Q Consensus       290 ~  290 (579)
                      +
T Consensus       317 ~  317 (337)
T 1pby_B          317 V  317 (337)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=3.5e-18  Score=169.81  Aligned_cols=233  Identities=9%  Similarity=0.093  Sum_probs=173.6

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|++++.++ .++.|.+||..+++....+..+......         .........+.|.+.         ++.
T Consensus        93 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~d---------g~~  154 (353)
T 3vgz_A           93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTE---------EVRPLQPRELVADDA---------TNT  154 (353)
T ss_dssp             SEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCS---------SCCCCEEEEEEEETT---------TTE
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcccc---------ccCCCCCceEEECCC---------CCE
Confidence            449999999666554 5799999999999988777643221000         000011234566553         566


Q ss_pred             EEEEE--CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCe
Q 008058           89 LVLGT--GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGI  162 (579)
Q Consensus        89 l~~~~--~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v  162 (579)
                      ++++.  .++.|.+||+.+++.+..+. .+...+.+++|+|+|+++++++.++.|.+||+.+++....+..    +...+
T Consensus       155 l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  233 (353)
T 3vgz_A          155 VYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF  233 (353)
T ss_dssp             EEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred             EEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence            66665  47889999999999886663 3455688999999999999999999999999999998887764    44568


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      .+++|+|+|+.+++++   +.|.+||..+++.+..+..+..  ..++|+|+++++++++..++.|.+||..+++..    
T Consensus       234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~----  307 (353)
T 3vgz_A          234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV----  307 (353)
T ss_dssp             EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----
Confidence            8899999999777665   7999999999998888775432  579999999987777657899999999887643    


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                       ..+.... ....+.|+     |+|++|+++..++
T Consensus       308 -~~~~~~~-~~~~~~~s-----~dg~~l~v~~~~~  335 (353)
T 3vgz_A          308 -KTFDTPT-HPNSLALS-----ADGKTLYVSVKQK  335 (353)
T ss_dssp             -EEEECCS-EEEEEEEC-----TTSCEEEEEEECC
T ss_pred             -EEEecCC-CCCeEEEc-----CCCCEEEEEEccc
Confidence             2333333 34567777     9999888877664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=1e-19  Score=199.34  Aligned_cols=327  Identities=10%  Similarity=0.029  Sum_probs=195.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+|||++++++ .|++|++||+.+++....+..+...               ...+.++.|.|.         ++.|
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~~~SpD---------g~~l   74 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK---------------SVNASNYGLSPD---------RQFV   74 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH---------------TTTCSEEEECTT---------SSEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc---------------ccceeeEEECCC---------CCeE
Confidence            45999999765554 6999999999999887666533221               011334455443         7888


Q ss_pred             EEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe-ecCC
Q 008058           90 VLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF-RAST  159 (579)
Q Consensus        90 ~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~  159 (579)
                      ++++.         ++.|++||+.+++.+...  .....+.+++|+|||+.|+++. ++.|++||+.+++..+.. .++.
T Consensus        75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             EEEecCceeEEeecceEEEEEECCCCccccce--ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence            88876         688999999999873111  1125688999999999999885 789999999888765432 2222


Q ss_pred             CCe-----------------eEEEEccCCCEEEEEC--C----------------------------------eEEEEEC
Q 008058          160 KGI-----------------SCMAVSSDGKMLATAA--G----------------------------------QLKTFNC  186 (579)
Q Consensus       160 ~~v-----------------~~l~~~p~g~~l~~~~--g----------------------------------~i~vwd~  186 (579)
                      ..+                 .+++|+|||+.|++++  .                                  .|++||+
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            222                 4899999999999875  1                                  7889999


Q ss_pred             CCCeee--------EEeecCCCCEEEEEEecCCCEEEEEecC-C--CeEEEEE----cCCCccccceeEEe--eecCcee
Q 008058          187 SDHKKM--------QKFSGHPGAVRFMTFSDNGKYVLSSAVG-E--RYIALWR----TDGVKKQSASCVLA--MEHPAVF  249 (579)
Q Consensus       187 ~~~~~~--------~~~~~h~~~v~~l~~~~~~~~l~s~s~~-d--~~i~vwd----~~~~~~~~~~~~~~--~~~~~~~  249 (579)
                      .+++..        ..+.+|...+..++|+||++.+++.... +  ..|.+||    +.+++...   +..  ...+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~---~~~~~~~~~~~~  308 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK---TQEHIEESRTGW  308 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG---GGEEEEECSSSC
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE---EEecccccCCce
Confidence            987643        1234688889999999998766664321 2  2488899    76665331   111  0122222


Q ss_pred             eE-----eEEecCCcccCCCcEEEE--EEcCC--eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccc
Q 008058          250 MD-----CRCIDNGGVDDAGLYVLA--ISETG--VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQ  320 (579)
Q Consensus       250 ~~-----~~~~~~~~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  320 (579)
                      +.     ...|+     |||+.++.  ...+|  .|++||+.+++.. .+......+.... +. +++    .|+..+.+
T Consensus       309 ~~~~~~~~~~~s-----pdg~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt~~~~~v~~~~-~~-d~~----~i~~~~~~  376 (719)
T 1z68_A          309 AGGFFVSTPVFS-----YDAISYYKIFSDKDGYKHIHYIKDTVENAI-QITSGKWEAINIF-RV-TQD----SLFYSSNE  376 (719)
T ss_dssp             SSSSSCCCCEEC-----TTSSCEEEEEECTTSCEEEEEESSCSTTCE-ECSCSSSCEEEEE-EE-CSS----EEEEEESC
T ss_pred             EccccCCccEEC-----CCCCeEEEEEEccCCceEEEEEECCCCceE-ecccCceEEEEEE-EE-eCC----EEEEEEec
Confidence            22     45676     99986654  44555  5777777666522 2211111111111 12 333    33333222


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEe----cCCCCcEEEeecCCcceeeccccce--ecccceee
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKIL----VNSGEDINLNCSQDGVLLPMSQSLL--KSKRGRYV  379 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~h~~~v~~~~~s~dg~~l~~s~s~d--~~~~~w~~  379 (579)
                      +........++......-....+.+.    +|...+..+.|||||+++.++++.+  ..+.+|++
T Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred             CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence            00000122333332100000112222    2556678899999999885555544  34566766

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=6.9e-18  Score=168.52  Aligned_cols=239  Identities=14%  Similarity=0.129  Sum_probs=158.2

Q ss_pred             EEEccCCCEEEEEeCC----CcEEEEECCC--CeEEE--EeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058           11 TSFSPALDYFAICSGD----ARIKIWDTLK--GQVQT--EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        11 ~~fs~dg~~las~s~d----g~i~vwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++|+|||++|++++.+    +.|.+|++..  |....  ....+                  ......+.+   +     
T Consensus        55 l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~------------------~~~p~~~~~---d-----  108 (361)
T 3scy_A           55 LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTM------------------GADPCYLTT---N-----  108 (361)
T ss_dssp             EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECS------------------SSCEEEEEE---C-----
T ss_pred             EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccC------------------CCCcEEEEE---C-----
Confidence            4999999999999875    7999998765  54322  22111                  111122233   2     


Q ss_pred             ccCCcEEEEEE-CCCeEEEEEccCCeEEEEe-----cC--------CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCC
Q 008058           83 KLGSSLLVLGT-GGGDVLALAVSAGQLKWRL-----SD--------CHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPL  147 (579)
Q Consensus        83 ~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~-----~~--------~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~  147 (579)
                         +..++++. .++.|.+|++.....+...     ..        .+...+.+++|+|+|+++++++ .++.|++|++.
T Consensus       109 ---g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~  185 (361)
T 3scy_A          109 ---GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN  185 (361)
T ss_dssp             ---SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ---CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence               55566665 5788999999754322111     01        1233468999999999776665 58899999887


Q ss_pred             CCce------e------eE-eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee--eEEee---cCCCCEEEEE
Q 008058          148 TGSL------L------GK-FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK--MQKFS---GHPGAVRFMT  206 (579)
Q Consensus       148 ~~~~------~------~~-~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~--~~~~~---~h~~~v~~l~  206 (579)
                      ....      +      .. ...+...+.+++|+|||+++++++   +.|.+||+.+++.  +..+.   .+......++
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~  265 (361)
T 3scy_A          186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIH  265 (361)
T ss_dssp             TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEE
T ss_pred             CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEE
Confidence            5431      1      11 222345688999999999777655   7999999987754  33332   3345578999


Q ss_pred             EecCCCEEEEEecC-CCeEEEEEcCC--CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEE--
Q 008058          207 FSDNGKYVLSSAVG-ERYIALWRTDG--VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWY--  280 (579)
Q Consensus       207 ~~~~~~~l~s~s~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd--  280 (579)
                      |+|||++|+++... ++.|.+|++..  ++..   .+..... ......+.|+     |+|++|++++ .++.|.+|+  
T Consensus       266 ~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~---~~~~~~~-g~~~~~~~~s-----pdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          266 LSPDGKYLYASNRLKADGVAIFKVDETNGTLT---KVGYQLT-GIHPRNFIIT-----PNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---EEEEEEC-SSCCCEEEEC-----TTSCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---EeeEecC-CCCCceEEEC-----CCCCEEEEEECCCCCEEEEEEE
Confidence            99999999877755 58999999963  3321   2223333 3344567777     9999999888 578999965  


Q ss_pred             CCCceee
Q 008058          281 GQNIEEL  287 (579)
Q Consensus       281 ~~~~~~~  287 (579)
                      .++++..
T Consensus       337 ~~~g~~~  343 (361)
T 3scy_A          337 QATGLLT  343 (361)
T ss_dssp             TTTCCEE
T ss_pred             CCCCcEe
Confidence            4466543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=8.6e-19  Score=186.95  Aligned_cols=233  Identities=13%  Similarity=0.089  Sum_probs=160.6

Q ss_pred             CcccceEEEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .||  .+++|+|||++||+++. ||+++||++.++.... +..+. ..+....|+                  |      
T Consensus        22 ~~~--~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~s------------------p------   74 (582)
T 3o4h_A           22 VEK--YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYG------------------V------   74 (582)
T ss_dssp             SCE--EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTT------------------C------
T ss_pred             cch--heeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCC------------------C------
Confidence            467  56699999999999887 9999999997666543 33332 233333333                  2      


Q ss_pred             cccCCcEEEEEEC---CCeEEEEEccC---CeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeE
Q 008058           82 RKLGSSLLVLGTG---GGDVLALAVSA---GQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~---~g~i~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                          ..++++++.   +....+|.+..   +... .+..  ...+...+|+|+|+. +++.+.++.+.+||+.+++....
T Consensus        75 ----d~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l  147 (582)
T 3o4h_A           75 ----GRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLREL  147 (582)
T ss_dssp             ----SEEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEE
T ss_pred             ----CeEEEEeccCCCCcceEEEEEeccCCCccc-cccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEe
Confidence                234555554   34455655543   2222 3322  223456688888864 33444455566999998876655


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCC--eEEE
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER--YIAL  226 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~--~i~v  226 (579)
                      ...+.   .+++|+|||+++++++      +.|++||+.+++.. .+.+|...+..++|+|||++|+++. .++  .|++
T Consensus       148 ~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~-~~~~~~i~~  222 (582)
T 3o4h_A          148 ARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLE-TAREARLVT  222 (582)
T ss_dssp             EEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEE-CSSCEEEEE
T ss_pred             ecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEcc-CCCeeEEEE
Confidence            54333   8899999999999765      46999999888754 6788989999999999999999655 688  8999


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEE--------ecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRC--------IDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      ||+.+++..      .+..+...+....        |+     |||..+++++.||++++|++  ++...
T Consensus       223 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s-----pdg~~~~~~~~~g~~~l~~~--g~~~~  279 (582)
T 3o4h_A          223 VDPRDGSVE------DLELPSKDFSSYRPTAITWLGYL-----PDGRLAVVARREGRSAVFID--GERVE  279 (582)
T ss_dssp             ECTTTCCEE------ECCCSCSHHHHHCCSEEEEEEEC-----TTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred             EcCCCCcEE------EccCCCcChhhhhhccccceeEc-----CCCcEEEEEEcCCcEEEEEE--CCeec
Confidence            999887522      2222222222233        66     99988999999999999999  66554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=2e-18  Score=188.63  Aligned_cols=254  Identities=13%  Similarity=0.104  Sum_probs=176.2

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCC-----CeEEEEeccccccccccccccccccccccCccceEEeeeccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLK-----GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      +.+..+  +|||||++||++ .|+.|++||+.+     ++.......+...+.   ...+....+ .....++.|.|.  
T Consensus       121 ~~~~~~--~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~---~g~~~~~ee-~~~~~~~~~SpD--  191 (706)
T 2z3z_A          121 EETASL--DFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV---YGQAVHQRE-FGIEKGTFWSPK--  191 (706)
T ss_dssp             TCCTTC--EECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE---ESSCCGGGC-TTCCCSEEECTT--
T ss_pred             ccccCC--cCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE---cccchhhhh-cCCCceEEECCC--
Confidence            345444  999999999996 589999999988     776543332221110   000000000 112345667664  


Q ss_pred             ccccccCCcEEEEEE---------------------------------CCCeEEEEEccCCeEEEEec-CCCCCCEEEEE
Q 008058           79 KKKRKLGSSLLVLGT---------------------------------GGGDVLALAVSAGQLKWRLS-DCHPGGVSAIS  124 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~---------------------------------~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~  124 (579)
                             ++.|++++                                 .++.|++||+.+++...... ..|...+.+++
T Consensus       192 -------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          192 -------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             -------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             -------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence                   67788877                                 34669999999988653332 25677899999


Q ss_pred             EccCCCEEEEEeCCC-----cEEEEeCCCCceeeEee-c-CCC---CeeEEEEcc--CCCEEEEEC--CeEEEEECC-CC
Q 008058          125 FATHGSCIYSAGADG-----MVCEIDPLTGSLLGKFR-A-STK---GISCMAVSS--DGKMLATAA--GQLKTFNCS-DH  189 (579)
Q Consensus       125 ~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~-~-~~~---~v~~l~~~p--~g~~l~~~~--g~i~vwd~~-~~  189 (579)
                      |+|||++|++++.++     .|++||+.+++....+. . +..   .+.+++|+|  ||+++++++  +.+++|++. ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            999999999988776     89999999984433332 2 222   246789999  999998887  778888775 66


Q ss_pred             eeeEEeecCCCCEEE-EEEecCCCEEEEEecCCC----eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCC
Q 008058          190 KKMQKFSGHPGAVRF-MTFSDNGKYVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       190 ~~~~~~~~h~~~v~~-l~~~~~~~~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      +.+..+..|...+.. +.|+|+++.|+.++..++    .|..||+.+++..      .+.+.. .+..+.|+     |+|
T Consensus       345 ~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~------~l~~~~-~~~~~~~s-----pdg  412 (706)
T 2z3z_A          345 RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK------DLTPES-GMHRTQLS-----PDG  412 (706)
T ss_dssp             CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE------ESCCSS-SEEEEEEC-----TTS
T ss_pred             CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce------eccCCC-ceEEEEEC-----CCC
Confidence            777888888888887 799999998887775555    6777777765422      222333 34567787     999


Q ss_pred             cEEEEEEcC----CeEEEEECCCce
Q 008058          265 LYVLAISET----GVCYIWYGQNIE  285 (579)
Q Consensus       265 ~~l~s~~~d----g~i~iwd~~~~~  285 (579)
                      ++++..+.+    +.+++||..+++
T Consensus       413 ~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          413 SAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CEEEEEecCCCCCcEEEEEECCCCe
Confidence            998877554    569999998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.81  E-value=1.6e-18  Score=189.97  Aligned_cols=237  Identities=11%  Similarity=0.053  Sum_probs=166.0

Q ss_pred             eEEEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEecccc---ccccccccccccccccccCccceEEeeec
Q 008058            9 ILTSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIA---STETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      .+++|||||++|++++.+         +.|.+||+.+++. ..+....   ..+....|+++                  
T Consensus        64 ~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd------------------  124 (723)
T 1xfd_A           64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK------------------  124 (723)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS------------------
T ss_pred             ceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCC------------------
Confidence            455999999999999864         7788999998876 3333221   12334444444                  


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCC------------------EEEEEEccCCCEEEEEeCC
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------------------VSAISFATHGSCIYSAGAD  138 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~------------------V~~l~~~~~~~~l~s~~~d  138 (579)
                               ++.|++++. +.|++||+.+++..... ..+...                  +.+++|+|||++|++++.|
T Consensus       125 ---------G~~la~~~~-~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          125 ---------GQQLIFIFE-NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             ---------TTCEEEEET-TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ---------CCEEEEEEC-CeEEEEECCCCceEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence                     777888876 79999999998876444 333333                  3789999999999988755


Q ss_pred             C----------------------------------cEEEEeCCCCceeeEeecC------CCCeeEEEEccCCCEEEEEC
Q 008058          139 G----------------------------------MVCEIDPLTGSLLGKFRAS------TKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       139 g----------------------------------~v~iwd~~~~~~~~~~~~~------~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +                                  .|++||+.+++....+..+      ...+.+++|+|||+++++..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~  273 (723)
T 1xfd_A          194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWL  273 (723)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEE
T ss_pred             CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEE
Confidence            3                                  7999999988765666554      55789999999999887653


Q ss_pred             ------CeEEEEECCCCeeeEEeec-CCCCEE----EEEEecCCCEEEEE-ecCCC------eEEEEE-cCCCcccccee
Q 008058          179 ------GQLKTFNCSDHKKMQKFSG-HPGAVR----FMTFSDNGKYVLSS-AVGER------YIALWR-TDGVKKQSASC  239 (579)
Q Consensus       179 ------g~i~vwd~~~~~~~~~~~~-h~~~v~----~l~~~~~~~~l~s~-s~~d~------~i~vwd-~~~~~~~~~~~  239 (579)
                            ..|++||+.+++....+.. +...+.    .++|+|||+.|+.. +..++      .|.+|| ...+...   +
T Consensus       274 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~  350 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---N  350 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---C
T ss_pred             cCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---c
Confidence                  4799999999987666543 334443    78999999977764 44577      566677 3333300   0


Q ss_pred             EEeee-cCceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCC
Q 008058          240 VLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQN  283 (579)
Q Consensus       240 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~  283 (579)
                      ...+. +.........|+     |+|++|+..+.+   +.+++|+++.
T Consensus       351 ~~~l~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          351 IQSITSGDWDVTKILAYD-----EKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             CCBSCCSSSCEEEEEEEE-----TTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             eeEeecCCeEEEeeeEEc-----CCCCEEEEEEcCCCCcceEEEEEeC
Confidence            11222 233334445777     999999877665   7899998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.81  E-value=1.6e-17  Score=166.06  Aligned_cols=240  Identities=13%  Similarity=0.157  Sum_probs=161.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECC-CCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTL-KGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ..++|+|||++|++++.+ .|.+|++. +++........ .+....+.++++                           +
T Consensus        43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd---------------------------g   94 (365)
T 1jof_A           43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN---------------------------T   94 (365)
T ss_dssp             SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC---------------------------C
T ss_pred             cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC---------------------------C
Confidence            456999999999999887 99999997 78765433211 011233444444                           5


Q ss_pred             cE--EEEEE-------------CCCeEEEEEcc-CCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeC
Q 008058           87 SL--LVLGT-------------GGGDVLALAVS-AGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDP  146 (579)
Q Consensus        87 ~~--l~~~~-------------~~g~i~iwd~~-~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~  146 (579)
                      +.  ++++.             .+|.+.+|++. .++....+.   ..+...+.+++|+|||+++++++. ++.|++||+
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEE
Confidence            53  33442             68899999997 465433221   135567999999999999887764 679999999


Q ss_pred             C-CCcee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC--CCeee---EEee-------cCCC------
Q 008058          147 L-TGSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKKM---QKFS-------GHPG------  200 (579)
Q Consensus       147 ~-~~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~~---~~~~-------~h~~------  200 (579)
                      . +++..  ..+.  .+...+..++|+|||+++++++   +.|.+|++.  +++..   ..+.       +|..      
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            8 67653  3343  2356789999999999888765   789999765  55542   1222       1222      


Q ss_pred             CEEEEE-EecCCCEEEEEecCCC-----eEEEEEcC-CCccccceeEE-eeecCceeeEeEEecCCcccC---CCcEEEE
Q 008058          201 AVRFMT-FSDNGKYVLSSAVGER-----YIALWRTD-GVKKQSASCVL-AMEHPAVFMDCRCIDNGGVDD---AGLYVLA  269 (579)
Q Consensus       201 ~v~~l~-~~~~~~~l~s~s~~d~-----~i~vwd~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~l~s  269 (579)
                      .+..++ |+|||++|+++...++     .|.+|++. +++..   .+. ...........++|+     |   +|++|++
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---~~~~~~~~~~~~~~~~a~s-----p~~~dg~~l~v  326 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---KQLFLSPTPTSGGHSNAVS-----PCPWSDEWMAI  326 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE---EEEEEEECSSCCTTCCCEE-----ECTTCTTEEEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE---EeeeeeecCCCCcccceec-----CCCcCCCEEEE
Confidence            488999 9999999887653333     89999996 34321   111 122222223344555     8   8999999


Q ss_pred             EEc-CCeEEEEECCCc
Q 008058          270 ISE-TGVCYIWYGQNI  284 (579)
Q Consensus       270 ~~~-dg~i~iwd~~~~  284 (579)
                      ++. ++.|.+|+++..
T Consensus       327 ~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          327 TDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECSSSCEEEEEEEETT
T ss_pred             EEcCCCeEEEEEEchh
Confidence            987 489999998665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=1.5e-17  Score=182.22  Aligned_cols=248  Identities=10%  Similarity=0.007  Sum_probs=169.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|+|||++++++  ||+|++||+.++++...+..+........             .....|.|.         ++.
T Consensus        20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~Spd---------g~~   75 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHS-------------INDYSISPD---------GQF   75 (740)
T ss_dssp             CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSC-------------CCEEEECTT---------SSE
T ss_pred             cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhccc-------------ccceEECCC---------CCE
Confidence            456999999999886  99999999999998777765543221111             111333332         778


Q ss_pred             EEEEECC---------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecC
Q 008058           89 LVLGTGG---------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRAS  158 (579)
Q Consensus        89 l~~~~~~---------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~  158 (579)
                      |++++.+         +.+.+||+.+++.. .+ ..|.+.+...+|||||+.|+.+ .|+.|++||+.+++..+. ..++
T Consensus        76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             EEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence            8888875         66789999999875 33 4677889999999999999888 578999999988775442 2222


Q ss_pred             CCCe-----------------eEEEEccCCCEEEEEC---C-----------------------------------eEEE
Q 008058          159 TKGI-----------------SCMAVSSDGKMLATAA---G-----------------------------------QLKT  183 (579)
Q Consensus       159 ~~~v-----------------~~l~~~p~g~~l~~~~---g-----------------------------------~i~v  183 (579)
                      ...+                 .++.|||||+.|+.+.   +                                   .|++
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v  232 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV  232 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence            2222                 3589999999998763   1                                   5888


Q ss_pred             EECCC---Ce--eeEEee------cCCCCEEEEEEecCCCEEEEEecC---CCeEEEEEcCCCc----cccceeEEeeec
Q 008058          184 FNCSD---HK--KMQKFS------GHPGAVRFMTFSDNGKYVLSSAVG---ERYIALWRTDGVK----KQSASCVLAMEH  245 (579)
Q Consensus       184 wd~~~---~~--~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~~---d~~i~vwd~~~~~----~~~~~~~~~~~~  245 (579)
                      ||+.+   ++  ....+.      +|...+..++|+|||+.++.....   +..|.+||+.+++    ......+....+
T Consensus       233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence            99988   73  233343      377889999999999966655422   2379999998876    221111111222


Q ss_pred             Ccee----eEeEEecCCcccCCCcEEE-EEEc-CC--eEEEEECCCceeec
Q 008058          246 PAVF----MDCRCIDNGGVDDAGLYVL-AISE-TG--VCYIWYGQNIEELR  288 (579)
Q Consensus       246 ~~~~----~~~~~~~~~~~~~~~~~l~-s~~~-dg--~i~iwd~~~~~~~~  288 (579)
                      ...+    .....|+     |||+.|+ ..+. +|  .|++||..+++..+
T Consensus       313 ~~~v~~~~~~~p~fs-----pDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFT-----LDGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             SSCSSSSSCCCCEEC-----TTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             CceEccCcCCCceEc-----CCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence            2211    1245566     9999887 6654 44  68888988765443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.3e-16  Score=159.18  Aligned_cols=235  Identities=14%  Similarity=0.083  Sum_probs=149.6

Q ss_pred             EccCCCEEEEEeC----CCcEEEEEC--CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058           13 FSPALDYFAICSG----DARIKIWDT--LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        13 fs~dg~~las~s~----dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ..+...+++.|+.    ++.|.+|++  .+++.......+...+.                  .++|.+.         +
T Consensus         9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~------------------~l~~spd---------g   61 (361)
T 3scy_A            9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPS------------------YLIPSAD---------G   61 (361)
T ss_dssp             GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCC------------------SEEECTT---------S
T ss_pred             hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCc------------------eEEECCC---------C
Confidence            3445556777753    568999865  55654332221222222                  3334332         7


Q ss_pred             cEEEEEECC----CeEEEEEccC--CeEE--EEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEe--
Q 008058           87 SLLVLGTGG----GDVLALAVSA--GQLK--WRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKF--  155 (579)
Q Consensus        87 ~~l~~~~~~----g~i~iwd~~~--~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~--  155 (579)
                      ++|++++.+    +.|.+|++..  ++..  ... ..+......+++  +++++++++ .++.|.+|++.....+..+  
T Consensus        62 ~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~  138 (361)
T 3scy_A           62 KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD  138 (361)
T ss_dssp             SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE
T ss_pred             CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce
Confidence            778888875    7899999876  4432  222 234556778888  888877776 6889999999754332211  


Q ss_pred             --e--c--------CCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCee------e-------EEeecCCCCEEEEEE
Q 008058          156 --R--A--------STKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKK------M-------QKFSGHPGAVRFMTF  207 (579)
Q Consensus       156 --~--~--------~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~------~-------~~~~~h~~~v~~l~~  207 (579)
                        .  +        +...+.+++|+|+|+++++++   +.|++|++.....      +       .....+...+..++|
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  218 (361)
T 3scy_A          139 VIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIF  218 (361)
T ss_dssp             EEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEE
T ss_pred             eEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEE
Confidence              1  1        122458899999999776654   7999998875431      1       112234456789999


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC--CeEEEEECC
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET--GVCYIWYGQ  282 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~  282 (579)
                      +|+|+++++++..++.|.+|++.+++...................+.|+     |+|++|++++.+  +.|.+|+++
T Consensus       219 spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s-----pdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          219 NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS-----PDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC-----TTSSEEEEEECSSSCEEEEEEEC
T ss_pred             cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC-----CCCCEEEEECCCCCCEEEEEEEc
Confidence            9999988887756899999999866432111111111222233567777     999999777664  899999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.7e-17  Score=169.38  Aligned_cols=197  Identities=11%  Similarity=0.065  Sum_probs=142.2

Q ss_pred             CcccceEEEEccCCCEEE----EEeCCCcEEEEECCCC--------eE---EEEeccccccccccccccccccccccCcc
Q 008058            4 SNIRDILTSFSPALDYFA----ICSGDARIKIWDTLKG--------QV---QTEFADIASTETTSLYGNRLEREHLSVDY   68 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~la----s~s~dg~i~vwd~~~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (579)
                      ++|  .+++|+|+|++||    +|+.|++|+|||+.++        +.   ...+.                 +| ...+
T Consensus        93 ~~v--~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~h-~~~V  152 (434)
T 2oit_A           93 FPI--HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-----------------DA-GGMV  152 (434)
T ss_dssp             SCE--EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-----------------SG-GGSE
T ss_pred             Ccc--cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-----------------CC-CCce
Confidence            357  5669999999999    7888999999998654        11   22222                 23 2356


Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT  148 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~  148 (579)
                      .+++|.+.+        +.++++++.||.|++||+.++...... .+|...|++++|+|+|++|++|+.||+|++||++ 
T Consensus       153 ~~v~~~p~~--------~~~las~s~Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-  222 (434)
T 2oit_A          153 IDMKWNPTV--------PSMVAVCLADGSIAVLQVTETVKVCAT-LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-  222 (434)
T ss_dssp             EEEEECSSC--------TTEEEEEETTSCEEEEEESSSEEEEEE-ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-
T ss_pred             EEEEECCCC--------CCEEEEEECCCeEEEEEcCCCcceeec-cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-
Confidence            677887754        678999999999999999998765444 4688999999999999999999999999999998 


Q ss_pred             CceeeEeecCC-------CCeeEEEEccCCCEEEEEC---C------eEEEEECCCCe-----eeEEee-------cCCC
Q 008058          149 GSLLGKFRAST-------KGISCMAVSSDGKMLATAA---G------QLKTFNCSDHK-----KMQKFS-------GHPG  200 (579)
Q Consensus       149 ~~~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~---g------~i~vwd~~~~~-----~~~~~~-------~h~~  200 (579)
                      ++....+..|.       ..|.+++|++++.++++.+   |      .+++|+++..+     ....+.       +...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~  302 (434)
T 2oit_A          223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ  302 (434)
T ss_dssp             CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred             CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence            66666655432       3799999999988886543   2      39999998642     112221       2222


Q ss_pred             CEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          201 AVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       201 ~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      +-..+.+.++.+.+++++.....|.+....
T Consensus       303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~  332 (434)
T 2oit_A          303 HHYYLSYIEEWDLVLAASAASTEVSILARQ  332 (434)
T ss_dssp             CCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred             cceeeehhccCCEEEEecCCCCceeEEEec
Confidence            323344447777777777656666666543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=1.1e-16  Score=161.32  Aligned_cols=304  Identities=11%  Similarity=0.051  Sum_probs=193.1

Q ss_pred             EEECCCCeEEEEeccccccccc-----cccccccccccccCccceEEeeecccccccccCCcEEEEEEC-CC--eEEEEE
Q 008058           31 IWDTLKGQVQTEFADIASTETT-----SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GG--DVLALA  102 (579)
Q Consensus        31 vwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g--~i~iwd  102 (579)
                      .+|..+|.....+..+......     ..|+++                           ++.|+.++. +|  .|.+||
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpD---------------------------g~~l~~~~~~~g~~~l~~~d   66 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRD---------------------------GSKLLFGGAFDGPWNYYLLD   66 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTT---------------------------SCEEEEEECTTSSCEEEEEE
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCC---------------------------CCEEEEEEcCCCCceEEEEe
Confidence            4577788887777765543332     344444                           777888777 66  488999


Q ss_pred             ccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEE--EccCCCEEEEE---
Q 008058          103 VSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA--VSSDGKMLATA---  177 (579)
Q Consensus       103 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~--~~p~g~~l~~~---  177 (579)
                      +.+++.. .+..++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+....  ++|++++++..   
T Consensus        67 ~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~  145 (388)
T 3pe7_A           67 LNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR  145 (388)
T ss_dssp             TTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred             CCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence            9998876 34455655555778999999999999999999999999987777766665554444  48999988742   


Q ss_pred             -------------------C--CeEEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEecC-----CCeEEEEEcC
Q 008058          178 -------------------A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAVG-----ERYIALWRTD  230 (579)
Q Consensus       178 -------------------~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~-----d~~i~vwd~~  230 (579)
                                         .  +.|++||+.+++.. .+..+...+..+.|+| +|+.++.++..     ...|.++|..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (388)
T 3pe7_A          146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINED  224 (388)
T ss_dssp             GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETT
T ss_pred             CcccccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCC
Confidence                               1  57999999988654 4555677899999999 99988887632     2368888876


Q ss_pred             CCccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEEc-CC----eEEEEECCCceee--cccCCceEEeee--c
Q 008058          231 GVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAISE-TG----VCYIWYGQNIEEL--RNTKATKILSSS--E  300 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~~~--~  300 (579)
                      .+...   .+  ..+. ...+....|+     |||+.|+..+. ++    .|++||+.+++..  ............  .
T Consensus       225 ~~~~~---~l--~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~  294 (388)
T 3pe7_A          225 GTNMR---KV--KTHAEGESCTHEFWV-----PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG  294 (388)
T ss_dssp             SCCCE---ES--CCCCTTEEEEEEEEC-----TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred             CCceE---Ee--eeCCCCcccccceEC-----CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence            65422   11  1122 2344556677     99998866554 22    3999999988642  222221111111  1


Q ss_pred             ccCcccccccchhhhhccccce--ecCCceEEEEEeCCCCCceeEEEecCCC-----------CcEEEeecCCcceeecc
Q 008058          301 DVNSKSQKSATAAIFAAKLQDI--VKPASVHTFVAYGLLLKPSFQKILVNSG-----------EDINLNCSQDGVLLPMS  367 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~h~~-----------~v~~~~~s~dg~~l~~s  367 (579)
                      ..++++++    .++....++.  ....+..+.+..-..  .....+..|..           .+..++|||||+.|.++
T Consensus       295 ~~~spdg~----~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~  368 (388)
T 3pe7_A          295 SLMVGDGS----DAPVDVQDDSGYKIENDPFLYVFNMKN--GTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFT  368 (388)
T ss_dssp             SEEEEEEC----CC------------CCCCEEEEEETTT--TEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEE
T ss_pred             CeEccCCC----cceeEeeeccccccCCCCEEEEEeccC--CceEEeccccCcccccccccccCCCCccCCCCCCEEEEE
Confidence            13677777    4443322100  001122333333111  22345556665           57888999999988455


Q ss_pred             ccceecccceee
Q 008058          368 QSLLKSKRGRYV  379 (579)
Q Consensus       368 ~s~d~~~~~w~~  379 (579)
                      +..++...+|.+
T Consensus       369 s~~~g~~~l~~~  380 (388)
T 3pe7_A          369 SDVHGKPALYLA  380 (388)
T ss_dssp             ECTTSSCEEEEE
T ss_pred             ecCCCceeEEEE
Confidence            556777777765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=2.1e-16  Score=157.91  Aligned_cols=191  Identities=15%  Similarity=0.088  Sum_probs=130.9

Q ss_pred             CcEEEEEECCCeEEEEEcc-CCeEEEEecCCCCCCEEEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-C
Q 008058           86 SSLLVLGTGGGDVLALAVS-AGQLKWRLSDCHPGGVSAISFATHGSC--IYSAG-------------ADGMVCEIDPL-T  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~-~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~-------------~dg~v~iwd~~-~  148 (579)
                      +++|++++.+ .|.+|++. +++..........+.+.+++|+|+|++  +++++             .+|.+.+|++. +
T Consensus        51 g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~  129 (365)
T 1jof_A           51 RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET  129 (365)
T ss_dssp             SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT
T ss_pred             CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC
Confidence            7778888887 99999997 777643221101123556899999994  45553             68999999997 4


Q ss_pred             CceeeEee----cCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-CCeee--EEee--cCCCCEEEEEEecCCCEEEE
Q 008058          149 GSLLGKFR----ASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-DHKKM--QKFS--GHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       149 ~~~~~~~~----~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-~~~~~--~~~~--~h~~~v~~l~~~~~~~~l~s  216 (579)
                      ++....+.    .+...+.+++|+|||+++++++   +.|++||+. +++..  ..+.  .|...+..++|+|+|+++++
T Consensus       130 g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v  209 (365)
T 1jof_A          130 GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYA  209 (365)
T ss_dssp             CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEE
T ss_pred             CcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEE
Confidence            66554443    2455789999999999888764   699999998 67643  3343  24567899999999999988


Q ss_pred             EecCCCeEEEEEcCC--Ccccc-ceeEEeeecC----ce------eeEeEE-ecCCcccCCCcEEEEEEcC-C-----eE
Q 008058          217 SAVGERYIALWRTDG--VKKQS-ASCVLAMEHP----AV------FMDCRC-IDNGGVDDAGLYVLAISET-G-----VC  276 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~--~~~~~-~~~~~~~~~~----~~------~~~~~~-~~~~~~~~~~~~l~s~~~d-g-----~i  276 (579)
                      ++..++.|.+|++..  ++... ...+..+...    ..      ....+. |+     |||++|++++.+ +     .|
T Consensus       210 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-----pdG~~l~v~~~~~~~~~~~~i  284 (365)
T 1jof_A          210 LMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT-----FSGKYMFASSRANKFELQGYI  284 (365)
T ss_dssp             EETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-----TTSSEEEEEEEESSTTSCCEE
T ss_pred             EECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC-----CCCCEEEEECCCCCCCCCCeE
Confidence            775578999998763  33210 0011111111    10      345566 77     999998877653 2     89


Q ss_pred             EEEECC
Q 008058          277 YIWYGQ  282 (579)
Q Consensus       277 ~iwd~~  282 (579)
                      .+|+++
T Consensus       285 ~v~~~~  290 (365)
T 1jof_A          285 AGFKLR  290 (365)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.76  E-value=9.4e-17  Score=159.05  Aligned_cols=144  Identities=17%  Similarity=0.173  Sum_probs=112.6

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCC-----
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRAST-----  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~-----  159 (579)
                      +.++++++.++.|.+||+.+++.+..+..+....+..++|+|+|++++ ++..++.|++||+.+++.+..+....     
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence            678899999999999999999987766433323678999999998765 44578999999999998887776432     


Q ss_pred             -CCeeEEEEccCCCEEEEEC--------------CeEEEEECCCCe---eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          160 -KGISCMAVSSDGKMLATAA--------------GQLKTFNCSDHK---KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       160 -~~v~~l~~~p~g~~l~~~~--------------g~i~vwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                       ..+.+++|+|+|+++++++              +.|.+||+.+++   .+..+. +...+.+++|+|+|+ +++++   
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~---  165 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG---  165 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES---
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc---
Confidence             2378999999999998876              799999998843   344444 344688999999999 55543   


Q ss_pred             CeEEEEEcCCCcc
Q 008058          222 RYIALWRTDGVKK  234 (579)
Q Consensus       222 ~~i~vwd~~~~~~  234 (579)
                      +.|.+||+.+++.
T Consensus       166 ~~i~~~d~~~~~~  178 (349)
T 1jmx_B          166 PDIYKMDVKTGKY  178 (349)
T ss_dssp             SSEEEECTTTCCE
T ss_pred             CcEEEEeCCCCce
Confidence            3399999988763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2.6e-15  Score=144.45  Aligned_cols=241  Identities=15%  Similarity=0.188  Sum_probs=164.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++|+|+++++...++.|.+||.. ++....+......           .++.. ....+++.+.+        +.+
T Consensus        33 ~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~-----------~~~~~-~p~~i~~~~~~--------g~l   91 (286)
T 1q7f_A           33 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-----------DSQLL-YPNRVAVVRNS--------GDI   91 (286)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-----------TTCBS-SEEEEEEETTT--------TEE
T ss_pred             ceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCC-----------ccccc-CceEEEEEcCC--------CeE
Confidence            455999999988888889999999987 6666555321100           01111 12344442221        444


Q ss_pred             EEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee--cCCCCeeEE
Q 008058           89 LVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR--ASTKGISCM  165 (579)
Q Consensus        89 l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~l  165 (579)
                      +++... ++.|.+|| .+++.+..+...+...+.+++++|+|+.+++...++.|++||. .++.+..+.  .+...+.++
T Consensus        92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A           92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEE
T ss_pred             EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEE
Confidence            444433 78899999 5666665654445567999999999997777777899999995 566666664  334578999


Q ss_pred             EEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCC-eEEEEEcCCCccccceeE
Q 008058          166 AVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGER-YIALWRTDGVKKQSASCV  240 (579)
Q Consensus       166 ~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~-~i~vwd~~~~~~~~~~~~  240 (579)
                      +++|+|+++++..  +.|++||. +++.+..+..+  ...+..++++|+|+.+++.. .++ .|.+|+... +..   ..
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~~g-~~~---~~  243 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQDG-QLI---SA  243 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECTTS-CEE---EE
T ss_pred             EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECCCC-CEE---EE
Confidence            9999999877765  89999997 45566666543  36789999999998777765 565 999999643 221   11


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      +...........++++     |+|+.+++ +.|++|++|+....
T Consensus       244 ~~~~~~~~~~~~i~~~-----~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          244 LESKVKHAQCFDVALM-----DDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEESSCCSCEEEEEEE-----TTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EcccCCCCcceeEEEC-----CCCcEEEE-CCCCeEEEEEcccc
Confidence            2222222224456676     89986666 67999999987554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=2.8e-16  Score=158.33  Aligned_cols=238  Identities=10%  Similarity=0.051  Sum_probs=160.9

Q ss_pred             EEEccCCCEEEEEeC-CCc--EEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           11 TSFSPALDYFAICSG-DAR--IKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fs~dg~~las~s~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+|||||++|++++. +|.  |.+||..+++.......+........|+++                           +.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd---------------------------g~   93 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD---------------------------DD   93 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT---------------------------SS
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC---------------------------CC
Confidence            489999999999987 664  888899988877655443333323344444                           78


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEE--EccCCCEEEEE----------------------eCCCcEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS--FATHGSCIYSA----------------------GADGMVCE  143 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~l~s~----------------------~~dg~v~i  143 (579)
                      .|+.++.++.|++||+.+++..... ..+...+....  ++|+++.++..                      ..+..|++
T Consensus        94 ~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  172 (388)
T 3pe7_A           94 ALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR  172 (388)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence            8999999999999999998865433 34445454443  48999988743                      23467999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC-C-------eEEEEECCCCeeeEEeecCC--CCEEEEEEecCCC
Q 008058          144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA-G-------QLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGK  212 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~-g-------~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~  212 (579)
                      ||+.+++... +..+...+..++|+| ||+.|+.+. +       .|+++|...++ ...+..+.  ..+..+.|+|||+
T Consensus       173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence            9999886544 444566789999999 999887654 1       68888876654 34444444  3578899999999


Q ss_pred             EEEEEecCCC----eEEEEEcCCCccccceeEEeeecCcee---eEeEEecCCcccCCCcEEEEE---------EcCCeE
Q 008058          213 YVLSSAVGER----YIALWRTDGVKKQSASCVLAMEHPAVF---MDCRCIDNGGVDDAGLYVLAI---------SETGVC  276 (579)
Q Consensus       213 ~l~s~s~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~---------~~dg~i  276 (579)
                      .|+..+..++    .|++||+.+++..   .+.........   .....|+     |||+.|+..         ..+..|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADPETLENR---QLTSMPACSHLMSNYDGSLMV-----GDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECTTTCCEE---EEEEECCEEEEEECTTSSEEE-----EEECCC------------CCCCEE
T ss_pred             EEEEEecCCCCCcceEEEEecCCCceE---EEEcCCCceeeeecCCCCeEc-----cCCCcceeEeeeccccccCCCCEE
Confidence            8766553322    3999999988643   22222210000   1112355     899888764         446689


Q ss_pred             EEEECCCcee
Q 008058          277 YIWYGQNIEE  286 (579)
Q Consensus       277 ~iwd~~~~~~  286 (579)
                      ++||+.+++.
T Consensus       323 ~~~d~~~~~~  332 (388)
T 3pe7_A          323 YVFNMKNGTQ  332 (388)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeccCCce
Confidence            9999988764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=8.6e-17  Score=171.45  Aligned_cols=265  Identities=10%  Similarity=-0.031  Sum_probs=174.1

Q ss_pred             CccceEEeeecccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMV  141 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v  141 (579)
                      ..+..+.+.+.         ++.|++++. +|.+.||++.+++.. ++...+...+.++.|+|| +.+++++.   +...
T Consensus        22 ~~~~~~~~~~D---------G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           22 VEKYSLQGVVD---------GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             SCEEEEEEEET---------TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             cchheeecCCC---------CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence            34455555553         777888776 999999999777664 444444468999999999 77777765   4555


Q ss_pred             EEEeCCC---CceeeEeecCCCCeeEEEEccCCCE--EEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEE
Q 008058          142 CEIDPLT---GSLLGKFRASTKGISCMAVSSDGKM--LATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       142 ~iwd~~~---~~~~~~~~~~~~~v~~l~~~p~g~~--l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      ++|.+..   +... .+... ..+...+|+|+|+.  ++++. +.+.+||+.+++.......+ .  .+++|+|||++++
T Consensus        91 ~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la  165 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIA  165 (582)
T ss_dssp             EEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEE
T ss_pred             EEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEE
Confidence            5654432   3322 33322 24456788888864  44444 66779999988765544433 3  7899999999999


Q ss_pred             EEecCC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC--eEEEEECCCceeecc
Q 008058          216 SSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG--VCYIWYGQNIEELRN  289 (579)
Q Consensus       216 s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~  289 (579)
                      +++ .|    +.|++||+.+++..      .+..+........|+     |||++|+++..+|  .|++||+++++.. .
T Consensus       166 ~~~-~~~~~~~~i~~~d~~~g~~~------~l~~~~~~~~~~~~S-----pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          166 GLG-FFGGGRVSLFTSNLSSGGLR------VFDSGEGSFSSASIS-----PGMKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             EEE-EEETTEEEEEEEETTTCCCE------EECCSSCEEEEEEEC-----TTSCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             EEE-EcCCCCeEEEEEcCCCCCce------EeecCCCccccceEC-----CCCCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            876 35    68999999887633      233444555778887     9999999888888  8999999988765 3


Q ss_pred             cCCceEEeeeccc--------CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCc
Q 008058          290 TKATKILSSSEDV--------NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDG  361 (579)
Q Consensus       290 ~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg  361 (579)
                      .......+.. ..        ++++++    .+++++.++.++++.     . |.    ..   ..+...+.+++|+ ||
T Consensus       233 ~~~~~~~~~~-~~~~~~~~~~~spdg~----~~~~~~~~g~~~l~~-----~-g~----~~---~~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          233 LELPSKDFSS-YRPTAITWLGYLPDGR----LAVVARREGRSAVFI-----D-GE----RV---EAPQGNHGRVVLW-RG  293 (582)
T ss_dssp             CCCSCSHHHH-HCCSEEEEEEECTTSC----EEEEEEETTEEEEEE-----T-TE----EE---CCCSSEEEEEEEE-TT
T ss_pred             ccCCCcChhh-hhhccccceeEcCCCc----EEEEEEcCCcEEEEE-----E-CC----ee---ccCCCceEEEEec-CC
Confidence            2222111111 12        567764    677777776544432     1 21    11   1334568899999 99


Q ss_pred             ceeeccccceec---ccceee
Q 008058          362 VLLPMSQSLLKS---KRGRYV  379 (579)
Q Consensus       362 ~~l~~s~s~d~~---~~~w~~  379 (579)
                      +++ ++++.+.+   +++|+.
T Consensus       294 ~~l-~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          294 KLV-TSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             EEE-EEEEETTEEEEEEEETT
T ss_pred             EEE-EEEcCCCCCCeEEEEcC
Confidence            998 77665533   455544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.72  E-value=6.6e-17  Score=176.90  Aligned_cols=275  Identities=13%  Similarity=0.059  Sum_probs=176.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCC---CEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCCceee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPG---GVSAISFATHGSCIYSAGA---------DGMVCEIDPLTGSLLG  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~  153 (579)
                      +. ++..+.++.|++||+.+++....+ .+|..   .+.+++|+|||++|++++.         ++.|++||+.+++.+.
T Consensus        27 g~-~~~~~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~  104 (719)
T 1z68_A           27 QE-YLHQSADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR  104 (719)
T ss_dssp             SE-EEEECTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC
T ss_pred             Ce-EEEEcCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc
Confidence            53 555567999999999999876443 33432   4899999999999998876         7899999999887631


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEe-ecCCCCE-----------------EEEEEecCCCEE
Q 008058          154 KFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKF-SGHPGAV-----------------RFMTFSDNGKYV  214 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~-~~h~~~v-----------------~~l~~~~~~~~l  214 (579)
                      ... ....+.+++|+|||+.|+.+. +.|++||+.+++..... .++...|                 .++.|+|||++|
T Consensus       105 ~~~-l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~l  183 (719)
T 1z68_A          105 GNE-LPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFL  183 (719)
T ss_dssp             SSC-CCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEE
T ss_pred             cee-cCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEE
Confidence            111 124688999999999999888 99999999888764322 2333322                 489999999999


Q ss_pred             EEEecCCC---------------------------------eEEEEEcCCCccccceeE---EeeecCceeeEeEEecCC
Q 008058          215 LSSAVGER---------------------------------YIALWRTDGVKKQSASCV---LAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       215 ~s~s~~d~---------------------------------~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  258 (579)
                      ++++.+++                                 .|++||+.+++......+   ..+..+...+..+.|+  
T Consensus       184 a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S--  261 (719)
T 1z68_A          184 AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV--  261 (719)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES--
T ss_pred             EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe--
Confidence            98874221                                 788999987653100000   0122355566777887  


Q ss_pred             cccCCCcEEEEEEcC----CeEEEEE----CCCceeecccC----CceEEee----ecccCcccccccchhhhh--cccc
Q 008058          259 GVDDAGLYVLAISET----GVCYIWY----GQNIEELRNTK----ATKILSS----SEDVNSKSQKSATAAIFA--AKLQ  320 (579)
Q Consensus       259 ~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~i~~--~~~~  320 (579)
                         ||++++++....    ..|.+||    ..+++......    .....+.    ....|+++++    .++.  +..+
T Consensus       262 ---pD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~----~l~~~~~~~~  334 (719)
T 1z68_A          262 ---TDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI----SYYKIFSDKD  334 (719)
T ss_dssp             ---SSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS----CEEEEEECTT
T ss_pred             ---CCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC----eEEEEEEccC
Confidence               998877775433    2488899    87776554331    1111111    0123567766    3333  2233


Q ss_pred             ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccc----eecccceeee
Q 008058          321 DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSL----LKSKRGRYVQ  380 (579)
Q Consensus       321 ~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~----d~~~~~w~~~  380 (579)
                      +     ..++++..-..  .....+..+...+..+.++ ||..+.++++.    ++..++|.+.
T Consensus       335 g-----~~~l~~~~~~~--~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          335 G-----YKHIHYIKDTV--ENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             S-----CEEEEEESSCS--TTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             C-----ceEEEEEECCC--CceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence            3     22333332111  1134555566667888888 88877455554    4778889874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.72  E-value=2e-16  Score=159.64  Aligned_cols=232  Identities=9%  Similarity=0.003  Sum_probs=153.3

Q ss_pred             EEEccCCCEEEEEeCC---CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           11 TSFSPALDYFAICSGD---ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fs~dg~~las~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ++|||||++|+.+...   ..|.+||..+++....... ....                 .....|.+.         ++
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~-~~~~-----------------~~~~~~spd---------g~   93 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG-KGDN-----------------TFGGFISTD---------ER   93 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS-SCBC-----------------TTTCEECTT---------SS
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC-CCCc-----------------cccceECCC---------CC
Confidence            4899999998887643   4688889988876443221 1111                 111334332         78


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEE-------------------EEEccCCCEEEEE-----eCCCcEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA-------------------ISFATHGSCIYSA-----GADGMVCE  143 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----~~dg~v~i  143 (579)
                      .|+.++.++.|++||+.+++..... ..+......                   +.|+|+++.++.+     ..+..|++
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            8999999999999999988765333 223332222                   3567777766544     35678999


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEcc-CCCEEEEEC--------CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCC
Q 008058          144 IDPLTGSLLGKFRASTKGISCMAVSS-DGKMLATAA--------GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGK  212 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~  212 (579)
                      ||+.+++..... .+...+..+.|+| +|+.++..+        ..|++||+.+++. ..+..+  ...+..+.|+|+|+
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGS  250 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSS
T ss_pred             EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCC
Confidence            999888765544 4566889999999 788666543        2688999876543 333333  23578899999999


Q ss_pred             EEEEEecCC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEE----------------
Q 008058          213 YVLSSAVGE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAIS----------------  271 (579)
Q Consensus       213 ~l~s~s~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~----------------  271 (579)
                      +|+.++..+    +.|++||+.+++..   .+..  .+.  .. ..|+     | +|+++++++                
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~--~~~--~~-~~~s-----~~dg~~l~~~~~~~p~~~~~~~~~~~~  317 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENE---EVMV--MPP--CS-HLMS-----NFDGSLMVGDGCDAPVDVADADSYNIE  317 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEE---EEEE--CCS--EE-EEEE-----CSSSSEEEEEECCC----------CCC
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeE---Eeee--CCC--CC-CCcc-----CCCCceEEEecCCcceeeccccccccC
Confidence            887775322    44999999877533   2221  122  12 5566     7 999888765                


Q ss_pred             cCCeEEEEECCCce
Q 008058          272 ETGVCYIWYGQNIE  285 (579)
Q Consensus       272 ~dg~i~iwd~~~~~  285 (579)
                      .++.|++||+.+++
T Consensus       318 ~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          318 NDPFLYVLNTKAKS  331 (396)
T ss_dssp             CCCEEEEEETTTTB
T ss_pred             CCCcEEEEecccCc
Confidence            24689999987664

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=3.4e-15  Score=146.84  Aligned_cols=240  Identities=8%  Similarity=0.074  Sum_probs=167.4

Q ss_pred             CcccceEEEEccCCCEEEEEeCC------------------------CcEEEEECCCCeEEEEecccccccccccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGD------------------------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRL   59 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (579)
                      +.+  ..++++|+|+++++...+                        ++|.+||..+++....+...             
T Consensus        24 ~~v--~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------   88 (329)
T 3fvz_A           24 GQV--SGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN-------------   88 (329)
T ss_dssp             SCE--EEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT-------------
T ss_pred             CCc--eEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC-------------
Confidence            456  455999999999888777                        47999999889887655311             


Q ss_pred             ccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe-EEEEec--------CCCCCCEEEEEEcc-CC
Q 008058           60 EREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ-LKWRLS--------DCHPGGVSAISFAT-HG  129 (579)
Q Consensus        60 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~-~~~~~~--------~~h~~~V~~l~~~~-~~  129 (579)
                         +.. ....+++.+.         +.++++.+.++.|++||..... .+..+-        .++.....+++|+| +|
T Consensus        89 ---~~~-~p~gia~d~~---------g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g  155 (329)
T 3fvz_A           89 ---LFY-LPHGLSIDTD---------GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG  155 (329)
T ss_dssp             ---TCS-SEEEEEECTT---------SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC
T ss_pred             ---ccC-CceEEEECCC---------CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC
Confidence               000 1123333321         6777777778999999986552 333332        24455789999999 78


Q ss_pred             CEEEEEe-CCCcEEEEeCCCCceeeEeecCC----------CCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEe
Q 008058          130 SCIYSAG-ADGMVCEIDPLTGSLLGKFRAST----------KGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKF  195 (579)
Q Consensus       130 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~----------~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~  195 (579)
                      ..+++.+ .++.|++|| .+++.+..+....          ..+..++++|+ |.++++..  +.|++||..+++.+..+
T Consensus       156 ~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          156 AVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            7777775 689999999 5787777764322          24899999998 66666655  79999999989888887


Q ss_pred             e--cCCCCEEEEEEecCCCEEEEEe------cCCCeEEEEEcCCCccccceeEEee---ecCceeeEeEEecCCcccCCC
Q 008058          196 S--GHPGAVRFMTFSDNGKYVLSSA------VGERYIALWRTDGVKKQSASCVLAM---EHPAVFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       196 ~--~h~~~v~~l~~~~~~~~l~s~s------~~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .  .+...+..++|+| +..+.+.+      ..+..|++|+..+++..     ..+   .........++++     |+|
T Consensus       235 ~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-----~~~~~~~~~~~~p~~ia~~-----~dG  303 (329)
T 3fvz_A          235 KHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-----DVFKPVRKHFDMPHDIVAS-----EDG  303 (329)
T ss_dssp             CCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEE-----EEECCSSSCCSSEEEEEEC-----TTS
T ss_pred             eccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-----EEEcCCCCccCCeeEEEEC-----CCC
Confidence            4  4567788999999 43333222      13458999999887643     222   1223335567777     899


Q ss_pred             cEEEEEEcCCeEEEEECCC
Q 008058          265 LYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       265 ~~l~s~~~dg~i~iwd~~~  283 (579)
                      ..+++...+++|++|++..
T Consensus       304 ~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          304 TVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEESSSCCEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCc
Confidence            8888888899999998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=5.6e-15  Score=160.02  Aligned_cols=249  Identities=9%  Similarity=0.025  Sum_probs=159.4

Q ss_pred             CcccceEEEEccCCCEEEEE--eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee-ccccc
Q 008058            4 SNIRDILTSFSPALDYFAIC--SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS-VDRKK   80 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~   80 (579)
                      ..|  ..++|++++-++++.  +.+++..||....+.....+..+...+....        | ........|.. ++   
T Consensus        24 ~~~--~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~--------~-~~~~~~~~~~~SPD---   89 (662)
T 3azo_A           24 GRP--ACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRV--------F-EYSGFPWAGVPRPA---   89 (662)
T ss_dssp             SCC--EEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCG--------G-GTCCCCEEEECCSS---
T ss_pred             Ccc--ceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccc--------c-ccCCccceeeeecC---
Confidence            445  344899887677776  5588899998654444455554432221100        0 00111234441 22   


Q ss_pred             ccccCCcE-EEEEEC-CCeEEEEEcc--C-CeEEEEecCC----CCCCEEEEEEccCCCEEEEEeCC----------CcE
Q 008058           81 KRKLGSSL-LVLGTG-GGDVLALAVS--A-GQLKWRLSDC----HPGGVSAISFATHGSCIYSAGAD----------GMV  141 (579)
Q Consensus        81 ~~~~~~~~-l~~~~~-~g~i~iwd~~--~-~~~~~~~~~~----h~~~V~~l~~~~~~~~l~s~~~d----------g~v  141 (579)
                           ++. |+.++. +..|.+|++.  . ++. ..+...    |...+.+++|+|||+.|++++.+          ..|
T Consensus        90 -----g~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           90 -----GGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             -----SSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             -----CCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence                 555 555443 4567777766  3 443 233221    56788999999999999998877          589


Q ss_pred             EEEeCCC------CceeeEee-cCCCCeeEEEEccCCCEEEEEC--C--------eEEEEECC-CC---eeeEEeecCCC
Q 008058          142 CEIDPLT------GSLLGKFR-ASTKGISCMAVSSDGKMLATAA--G--------QLKTFNCS-DH---KKMQKFSGHPG  200 (579)
Q Consensus       142 ~iwd~~~------~~~~~~~~-~~~~~v~~l~~~p~g~~l~~~~--g--------~i~vwd~~-~~---~~~~~~~~h~~  200 (579)
                      ++||+.+      ++. ..+. .+...+..++|+|||++|+.++  +        .|++||+. ++   +......+|..
T Consensus       164 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~  242 (662)
T 3azo_A          164 AAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE  242 (662)
T ss_dssp             EEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred             EEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence            9999987      544 4444 5556788899999999998765  2        79999999 56   44444455678


Q ss_pred             CEEEEEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecCcee--------eEeEEecCCcccCCCcEEEEE
Q 008058          201 AVRFMTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVF--------MDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       201 ~v~~l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      .+..+.|+|||++++++. .++  .|.+||+.+++..     ....++...        ...+.|+     |++++++++
T Consensus       243 ~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~-----~l~~~~~~~~~p~w~~~~~~~~~~-----~~~~~~~~~  311 (662)
T 3azo_A          243 AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAAT-----QLCRREEEFAGPLWTPGMRWFAPL-----ANGLIAVVH  311 (662)
T ss_dssp             CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEE-----ESSCCSSBSSCCCCSTTCCSEEEC-----TTSCEEEEE
T ss_pred             eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCcee-----ecccccccccCccccccCceEeEe-----CCCEEEEEE
Confidence            899999999999665554 677  5666666555422     111122111        2345565     789999999


Q ss_pred             EcCCeEEEE--ECCCce
Q 008058          271 SETGVCYIW--YGQNIE  285 (579)
Q Consensus       271 ~~dg~i~iw--d~~~~~  285 (579)
                      +. |.+++|  |..+++
T Consensus       312 ~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          312 GK-GAAVLGILDPESGE  327 (662)
T ss_dssp             BS-SSCEEEEEETTTTE
T ss_pred             Ec-CccEEEEEECCCCc
Confidence            98 999999  555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.66  E-value=1.5e-14  Score=144.03  Aligned_cols=291  Identities=10%  Similarity=0.033  Sum_probs=185.8

Q ss_pred             cCCCEEEEEe------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           15 PALDYFAICS------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        15 ~dg~~las~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      +++++++...      .|+.|.+||..+++.+..+.....+  .+.|+++                           +++
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spd---------------------------g~~   63 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSND---------------------------GKK   63 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTT---------------------------SSE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCC---------------------------CCE
Confidence            3677666654      3789999999999988777644332  4444444                           777


Q ss_pred             EEEEEC----------CCeEEEEEccCCeEEEEecCC-----CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCce
Q 008058           89 LVLGTG----------GGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSL  151 (579)
Q Consensus        89 l~~~~~----------~g~i~iwd~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~  151 (579)
                      ++++..          ++.|.+||+.+++.+.++...     +......++|+|||++|+++..  +++|.+||+.+++.
T Consensus        64 lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           64 IYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             EEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             EEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence            888763          567999999998887665321     2345678999999999998874  68999999999988


Q ss_pred             eeE-eecCCCCeeEEEEccCC-CEEEEEC--CeEEEEECCC-CeeeEE------eecCCCCEEEEEEecCCCEEEEEecC
Q 008058          152 LGK-FRASTKGISCMAVSSDG-KMLATAA--GQLKTFNCSD-HKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~~-~~~~~~~v~~l~~~p~g-~~l~~~~--g~i~vwd~~~-~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      +.. +...  ....+.+.|++ ..+++.+  |.+.+|+... ++....      +..+..++ .+.++|++..++..+ .
T Consensus       144 ~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~  219 (361)
T 2oiz_A          144 VEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS-Y  219 (361)
T ss_dssp             EEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB-T
T ss_pred             EEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEe-C
Confidence            877 5532  22335677776 3444433  8888888865 544422      22222332 344578887777776 6


Q ss_pred             CCeEEEEEcCCCccccceeEEeeec-------Cc---eeeEeEEecCCcccCCCcEEEEEEc-----------CCeEEEE
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEH-------PA---VFMDCRCIDNGGVDDAGLYVLAISE-----------TGVCYIW  279 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~l~s~~~-----------dg~i~iw  279 (579)
                      ++.+.++|+......   .......       ..   .....+.++     |++.+++++..           ++.|.+|
T Consensus       220 ~~~v~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~p~g~~~~a~~-----~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          220 YGNVYSADFSGDEVK---VDGPWSLLNDEDKAKNWVPGGYNLVGLH-----RASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             TSEEEEEECSSSSCE---EEEEEESCCHHHHHTTCEECCSSCEEEE-----TTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CCeEEEEEecCCCce---ecccccccCccccccccccCCeeEEEEe-----cCCCeEEEEEccCCCcccccCCCceEEEE
Confidence            899999999765422   1111100       00   001124565     88888877654           3489999


Q ss_pred             ECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCC--ceeEEEecCCCCcEEEee
Q 008058          280 YGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLK--PSFQKILVNSGEDINLNC  357 (579)
Q Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~h~~~v~~~~~  357 (579)
                      |..+++.+.......   .....++++++    .+++++. +.+..+|        ....  ....++..+...-..+++
T Consensus       292 D~~t~~~v~~i~~~~---p~~ia~spdg~----~l~v~n~-~~v~v~D--------~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD---ALSMTIDQQRN----LMLTLDG-GNVNVYD--------ISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             ETTTTEEEEEEECTT---CCEEEEETTTT----EEEEECS-SCEEEEE--------CSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             ECCCCcEEEEEecCC---eeEEEECCCCC----EEEEeCC-CeEEEEE--------CCCCcceeeEEeccCCCCcEEEEe
Confidence            999999887655443   11122577777    6666654 4333322        2223  444454455556788999


Q ss_pred             cCCcc
Q 008058          358 SQDGV  362 (579)
Q Consensus       358 s~dg~  362 (579)
                      +|||.
T Consensus       356 ~p~G~  360 (361)
T 2oiz_A          356 HPVGG  360 (361)
T ss_dssp             CCCSC
T ss_pred             cCCCC
Confidence            99986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=1.8e-13  Score=143.31  Aligned_cols=233  Identities=9%  Similarity=-0.005  Sum_probs=165.4

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      .+|.+.++++...+++|.++|..+++.+..+..... +..+.|+++                           +++++++
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~-p~~v~~SpD---------------------------Gr~lyv~  214 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSAS---------------------------GRYLFVI  214 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSC-EEEEEECTT---------------------------SCEEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC-ccceEECCC---------------------------CCEEEEE
Confidence            344455666777799999999999999888763322 223344444                           8889999


Q ss_pred             ECCCeEEEEEcc--CCeEEEEecCCCCCCEEEEEEc----cCCCEEEEEe-CCCcEEEEeCCCCceeeEeecC-------
Q 008058           93 TGGGDVLALAVS--AGQLKWRLSDCHPGGVSAISFA----THGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAS-------  158 (579)
Q Consensus        93 ~~~g~i~iwd~~--~~~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~-------  158 (579)
                      +.++.|.+||+.  +++.+.++..+  .....++|+    |||+++++++ .+++|.++|..+.+.+.++...       
T Consensus       215 ~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~  292 (567)
T 1qks_A          215 GRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQ  292 (567)
T ss_dssp             ETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTC
T ss_pred             cCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccc
Confidence            999999999996  77777776543  357899999    6999987766 5689999999999988876532       


Q ss_pred             ----CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee--EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          159 ----TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM--QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       159 ----~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                          ...+..+..++++..++...   |.|.++|....+.+  ..+ ........+.|+|+|+++++++..++.|.++|+
T Consensus       293 ~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          293 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence                12678899999877666553   89999999875432  233 234557789999999999888767899999999


Q ss_pred             CCCccccceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEE--cCCeEEEEECCC
Q 008058          230 DGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS--ETGVCYIWYGQN  283 (579)
Q Consensus       230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~  283 (579)
                      .+++......+ ....|+.....  ++.     |++..+.+.+  .++.|.++|..+
T Consensus       372 ~t~kl~~~i~vgg~~Phpg~g~~--~~~-----p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          372 KEGKLVAIEDTGGQTPHPGRGAN--FVH-----PTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTEEEEEEECSSSSBCCTTCEE--EEE-----TTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCcEEEEEeccCcCCCCcccee--eEC-----CCCCcEEEeCCCCCCeEEEecCCC
Confidence            98864421111 11123322222  244     7755555443  368999999887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.65  E-value=3.5e-14  Score=139.75  Aligned_cols=246  Identities=11%  Similarity=0.099  Sum_probs=165.0

Q ss_pred             CCCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            1 MGSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         1 ~~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      |.+..|..+  +|+|++..++..+.++.++.|   .+.....+..+...                  ..++.|.+.    
T Consensus         3 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~~~~~~~----   55 (333)
T 2dg1_A            3 MSQQDLPTL--FYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQ------------------LEGLNFDRQ----   55 (333)
T ss_dssp             ---CCCCBC--CSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCC------------------EEEEEECTT----
T ss_pred             cccccccee--eecCCccceeEEeecccCccc---ccceeEEEeccCcc------------------ccCcEECCC----
Confidence            455677555  999999888887888999999   34444444322221                  234555432    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCceeeEee
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----GMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~  156 (579)
                           +.+++++..++.|.+||..+++..... ..+...+.+++++|+|+++++...+    +.|.+||..++.....+.
T Consensus        56 -----g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           56 -----GQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             -----SCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             -----CCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence                 666677788899999999988765333 2456789999999999887777666    689999988776543332


Q ss_pred             --cCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          157 --ASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       157 --~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                        .+...+.+++++|+|+++++..        +.|+.||..+++.. .+..+...+..++|+|++++++.+...++.|.+
T Consensus       130 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~  208 (333)
T 2dg1_A          130 DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHR  208 (333)
T ss_dssp             SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred             cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence              2345789999999999888765        35666666554433 333334567899999999877666546789999


Q ss_pred             EEcCC-Cccccc---eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          227 WRTDG-VKKQSA---SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       227 wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      |++.. +.....   ........ ......++++     ++|+..++...++.|.+||.+ ++.+
T Consensus       209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d-----~~G~l~v~~~~~~~v~~~d~~-g~~~  266 (333)
T 2dg1_A          209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCID-----SDDNLYVAMYGQGRVLVFNKR-GYPI  266 (333)
T ss_dssp             EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEB-----TTCCEEEEEETTTEEEEECTT-SCEE
T ss_pred             EEecCCCcCcccccceEEEecCC-CCCCCceEEC-----CCCCEEEEEcCCCEEEEECCC-CCEE
Confidence            99964 221100   00111111 1345567776     889888877788999999984 4443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=9.7e-14  Score=132.29  Aligned_cols=230  Identities=10%  Similarity=0.070  Sum_probs=165.5

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058           15 PALDYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        15 ~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      ..+++|++++.|+.|.+||.++|+.+..+..+. .......+.++                           +++++  +
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd---------------------------G~ilv--s   53 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA---------------------------GEILF--S   53 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT---------------------------SCEEE--E
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC---------------------------CCEEE--e
Confidence            346789999999999999999999999887543 12222222222                           66666  5


Q ss_pred             CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCC------CCeeEEE
Q 008058           94 GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRAST------KGISCMA  166 (579)
Q Consensus        94 ~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~------~~v~~l~  166 (579)
                      .++.|..||. +++.++++..++...+.++.+.|+|+.+++.+. ++.|..+|. +|+.+..+....      .....++
T Consensus        54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred             CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence            6788999999 899988886544457899999999999999887 888888885 788877765321      2455678


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +.++|+++++..  +.|..||.+ |+.+.++..+ ..+.++.+.++|+.+++++ .++.|..+|..+++..     ....
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~-----w~~~  203 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACG-DAHCFVQLNLESNRIV-----RRVN  203 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECB-TTSEEEEECTTTCCEE-----EEEE
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeC-CCCeEEEEeCcCCcEE-----EEec
Confidence            899999999887  899999988 9999888765 3456678889999888776 5778999999987743     3332


Q ss_pred             cC------ceeeEeEEecCCcccCCCcEEEEEEcC--------CeEEEEEC-CCceeec
Q 008058          245 HP------AVFMDCRCIDNGGVDDAGLYVLAISET--------GVCYIWYG-QNIEELR  288 (579)
Q Consensus       245 ~~------~~~~~~~~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~-~~~~~~~  288 (579)
                      ..      -.........     ++|..+++....        +..+++++ .+++.+.
T Consensus       204 ~~~~~~~~l~~~~~~~~~-----~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W  257 (276)
T 3no2_A          204 ANDIEGVQLFFVAQLFPL-----QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW  257 (276)
T ss_dssp             GGGSBSCCCSEEEEEEEC-----TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred             CCCCCCccccccccceEc-----CCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence            21      1223444454     788888776421        23356655 3555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=9.6e-15  Score=160.00  Aligned_cols=194  Identities=12%  Similarity=0.048  Sum_probs=135.4

Q ss_pred             EEEccCCCEEEEEeCC---------CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058           11 TSFSPALDYFAICSGD---------ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus        11 ~~fs~dg~~las~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+|||||++|++++.+         +.+.+||+.+++... +..+...+....|+|+                       
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd-----------------------  122 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV-----------------------  122 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS-----------------------
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC-----------------------
Confidence            4889999999998876         566799999987643 4433333333344443                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----------------EEEEEccCCCEEEEEeCCC-----
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGADG-----  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~~~l~s~~~dg-----  139 (579)
                          ++.|+.+ .++.|++|+..+++.......++...+                 .++.|+|||+.|+.++.|.     
T Consensus       123 ----G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~  197 (740)
T 4a5s_A          123 ----GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL  197 (740)
T ss_dssp             ----TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred             ----CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence                6777777 568999999998886543334444333                 3489999999998875332     


Q ss_pred             -------------------------------cEEEEeCCC---Cc--eeeEee------cCCCCeeEEEEccCCCEEEEE
Q 008058          140 -------------------------------MVCEIDPLT---GS--LLGKFR------ASTKGISCMAVSSDGKMLATA  177 (579)
Q Consensus       140 -------------------------------~v~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~p~g~~l~~~  177 (579)
                                                     +|++||+.+   ++  ....+.      ++...+..++|+|||+.++..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence                                           488899988   73  222333      266689999999999977655


Q ss_pred             C------CeEEEEECCCCe----e--eEEe--ecCCCCEE-----EEEEecCCCEEE-EEecCCC--eEEEEEcCCCc
Q 008058          178 A------GQLKTFNCSDHK----K--MQKF--SGHPGAVR-----FMTFSDNGKYVL-SSAVGER--YIALWRTDGVK  233 (579)
Q Consensus       178 ~------g~i~vwd~~~~~----~--~~~~--~~h~~~v~-----~l~~~~~~~~l~-s~s~~d~--~i~vwd~~~~~  233 (579)
                      .      ..|++||+.+++    +  +..+  .+|...|.     .+.|+|||+.++ ..+..+|  .|++||+.+++
T Consensus       278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            3      379999999886    2  2222  45665554     789999999877 6654444  68888887765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=1.9e-13  Score=136.04  Aligned_cols=237  Identities=12%  Similarity=0.089  Sum_probs=161.9

Q ss_pred             EEEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEecccc------ccccccccccccccccccCccceEEe
Q 008058           10 LTSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA------STETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        10 ~~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      .++|||||+++++++          .+++|.+||..+++.+.++....      .....+.++++               
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spd---------------  118 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTD---------------  118 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTT---------------
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCC---------------
Confidence            459999999999886          26789999999999888776321      12223333333               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCC-
Q 008058           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLT-  148 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~-  148 (579)
                                  +++++++..  ++.|.+||+.+++.+.. +..   .....+.+.|++ ..+++.+.||.+..|++.. 
T Consensus       119 ------------g~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~---~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~  183 (361)
T 2oiz_A          119 ------------GKFIVLQNASPATSIGIVDVAKGDYVEDVTAA---AGCWSVIPQPNRPRSFMTICGDGGLLTINLGED  183 (361)
T ss_dssp             ------------SSEEEEEEESSSEEEEEEETTTTEEEEEEGGG---TTEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred             ------------CCEEEEECCCCCCeEEEEECCCCcEEEEEecC---CCcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence                        778888774  57899999999998876 532   233446678876 5688888999999999865 


Q ss_pred             Cceee------EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec------CC----CCEEEEEEe
Q 008058          149 GSLLG------KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG------HP----GAVRFMTFS  208 (579)
Q Consensus       149 ~~~~~------~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~------h~----~~v~~l~~~  208 (579)
                      ++...      .+.....+ ..+.++|++..++..+  +.++++|+.....  +..+.-      +.    .....++|+
T Consensus       184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~  262 (361)
T 2oiz_A          184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH  262 (361)
T ss_dssp             SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred             CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence            55442      22222222 2334467776666555  8999999875432  222211      00    111237899


Q ss_pred             cCCCEEEEEec----------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          209 DNGKYVLSSAV----------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       209 ~~~~~l~s~s~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                      |+++.++++..          .++.|.+||+.+.+..     ..+..+.  ...+.|+     |+|++|++++. +.|.+
T Consensus       263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v-----~~i~~~~--p~~ia~s-----pdg~~l~v~n~-~~v~v  329 (361)
T 2oiz_A          263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV-----ARIPGRD--ALSMTID-----QQRNLMLTLDG-GNVNV  329 (361)
T ss_dssp             TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE-----EEEECTT--CCEEEEE-----TTTTEEEEECS-SCEEE
T ss_pred             cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE-----EEEecCC--eeEEEEC-----CCCCEEEEeCC-CeEEE
Confidence            99888877642          1348999999988643     3444444  5667777     99999999887 99999


Q ss_pred             EECCCc--eeeccc
Q 008058          279 WYGQNI--EELRNT  290 (579)
Q Consensus       279 wd~~~~--~~~~~~  290 (579)
                      ||..++  +.+..+
T Consensus       330 ~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          330 YDISQPEPKLLRTI  343 (361)
T ss_dssp             EECSSSSCEEEEEE
T ss_pred             EECCCCcceeeEEe
Confidence            999999  877664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=3e-13  Score=147.45  Aligned_cols=237  Identities=12%  Similarity=0.073  Sum_probs=160.3

Q ss_pred             eEEEEccCCCEEEEEeCCC-----cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGDA-----RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      -.++|||||++||.++.++     +|++||+.+|+........                   .....+.|.+.       
T Consensus       128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-------------------~~~~~~~wspD-------  181 (710)
T 2xdw_A          128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-------------------VKFSCMAWTHD-------  181 (710)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-------------------ECSCCEEECTT-------
T ss_pred             EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-------------------cccceEEEEeC-------
Confidence            3559999999999876543     8999999999876532110                   01234566553       


Q ss_pred             cCCcEEEEEECCCe----------------EEEEEccCCeEE--EEe-cCCCCCCEEEEEEccCCCEEEEEeC-----CC
Q 008058           84 LGSSLLVLGTGGGD----------------VLALAVSAGQLK--WRL-SDCHPGGVSAISFATHGSCIYSAGA-----DG  139 (579)
Q Consensus        84 ~~~~~l~~~~~~g~----------------i~iwd~~~~~~~--~~~-~~~h~~~V~~l~~~~~~~~l~s~~~-----dg  139 (579)
                        ++.|+.++.++.                |++|++.+++..  ..+ ...|...+.++.|+|||++|+.++.     +.
T Consensus       182 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 --GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN  259 (710)
T ss_dssp             --SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred             --CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence              677888877655                999999887621  111 1235566889999999999887764     56


Q ss_pred             cEEEEeCCC------Cc-eeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe--eeEEeecCCC--CE
Q 008058          140 MVCEIDPLT------GS-LLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK--KMQKFSGHPG--AV  202 (579)
Q Consensus       140 ~v~iwd~~~------~~-~~~~~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~--~~~~~~~h~~--~v  202 (579)
                      .|++||+.+      +. ....+..+...+.. .|+|+|+.|+..+      +.|.+||+.++.  ....+..|..  .+
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  338 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEE
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeE
Confidence            899999976      43 45566666665554 5888988777654      379999998764  2345555544  67


Q ss_pred             EEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE----cCCeE
Q 008058          203 RFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS----ETGVC  276 (579)
Q Consensus       203 ~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~i  276 (579)
                      ..+.|++++..+++.. .|+.  |.+|++.+++..     ..+..+...+..+.++     |++..++...    ..+++
T Consensus       339 ~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~-----~~l~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i  407 (710)
T 2xdw_A          339 EWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALL-----KIFPLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGII  407 (710)
T ss_dssp             EEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEE-----EEECCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEE
T ss_pred             EEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEE-----EecCCCCceEEEEecC-----CCCCEEEEEEeCCCCCCEE
Confidence            8899987776666665 5774  566676555422     2333334445556666     7887665442    25799


Q ss_pred             EEEECCCce
Q 008058          277 YIWYGQNIE  285 (579)
Q Consensus       277 ~iwd~~~~~  285 (579)
                      +.||+.+++
T Consensus       408 ~~~d~~tg~  416 (710)
T 2xdw_A          408 YHCDLTKEE  416 (710)
T ss_dssp             EEEETTSSS
T ss_pred             EEEECCCCc
Confidence            999998876

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=1e-13  Score=136.26  Aligned_cols=222  Identities=11%  Similarity=0.036  Sum_probs=152.8

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc-eeeEee---------cCCCCeeEE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS-LLGKFR---------ASTKGISCM  165 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~---------~~~~~v~~l  165 (579)
                      +.|.+||..+++.......++.....+++++|+|+.+++...++.|++||..... .+..+.         .+...+..+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4799999999998766655566789999999999988888889999999975432 455552         333468999


Q ss_pred             EEcc-CCCEEEEEC---CeEEEEECCCCeeeEEeecC----------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          166 AVSS-DGKMLATAA---GQLKTFNCSDHKKMQKFSGH----------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       166 ~~~p-~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h----------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      +++| +|.++++.+   +.|++|| .+++.+..+...          -.....++++|++..++++...++.|++|+..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            9999 888888873   7999999 567777776422          234889999999444444445789999999986


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-------EcCCeEEEEECCCceeecccCCceEEeeecccCc
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-------SETGVCYIWYGQNIEELRNTKATKILSSSEDVNS  304 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  304 (579)
                      ++..   ..+...........+.++     | +..+++.       ..++.|++|+..+++.+....+            
T Consensus       228 G~~~---~~~~~~~~~~~~~~~~~~-----p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~------------  286 (329)
T 3fvz_A          228 KEFV---REIKHASFGRNVFAISYI-----P-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP------------  286 (329)
T ss_dssp             CCEE---EEECCTTTTTCEEEEEEE-----T-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC------------
T ss_pred             CcEE---EEEeccccCCCcceeeec-----C-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC------------
Confidence            6533   112112222333455565     6 3333332       2344788888776654432210            


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                              ..++......++++|||.++ ++.+.++.|++|++.
T Consensus       287 ----------------------------------------~~~~~~~p~~ia~~~dG~ly-vad~~~~~I~~~~~~  321 (329)
T 3fvz_A          287 ----------------------------------------VRKHFDMPHDIVASEDGTVY-IGDAHTNTVWKFTLT  321 (329)
T ss_dssp             ----------------------------------------SSSCCSSEEEEEECTTSEEE-EEESSSCCEEEEEEE
T ss_pred             ----------------------------------------CCCccCCeeEEEECCCCCEE-EEECCCCEEEEEeCC
Confidence                                                    01233457889999999777 888889999999874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=2.3e-13  Score=129.47  Aligned_cols=238  Identities=8%  Similarity=-0.049  Sum_probs=156.0

Q ss_pred             eEEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++++|+|++++ +.+.++.|.+||..++..........                  .....+++.+.         +.
T Consensus        27 ~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------------------~~p~~i~~~~~---------g~   79 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------------------YQPQGLAVDGA---------GT   79 (270)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------------------CSCCCEEECTT---------CC
T ss_pred             cceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------------------CCcceeEECCC---------CC
Confidence            3569999999776 44678899999976554321111000                  11223444331         45


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                       ++++..++.|.+||...+... .+.......+.+++++|+|+.+++...++.|.+||..+.............+.++++
T Consensus        80 -l~v~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           80 -VYVTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             -EEEEETTTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             -EEEEcCCCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence             455555889999998776543 232233367899999999987777777889999986555433222223346789999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeec
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                      +|+|+++++..  +.|.+||............+...+.+++++++|..+++.. .++.|.+|+.......     .....
T Consensus       158 ~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~~~-----~~~~~  231 (270)
T 1rwi_B          158 DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST-----VLPFT  231 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTSCEEEECTTCSCCE-----ECCCC
T ss_pred             eCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCcce-----eeccC
Confidence            99999777765  7999999887654433333446788999999997666554 6889999998765322     11111


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      .......++++     ++|+.+++...+++|++|+....+.
T Consensus       232 ~~~~p~~i~~~-----~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          232 GLNTPLAVAVD-----SDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             SCSCEEEEEEC-----TTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCCceeEEEC-----CCCCEEEEECCCCEEEEEcCCCccc
Confidence            22334566776     8899888888899999999876554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=4.6e-13  Score=129.41  Aligned_cols=231  Identities=12%  Similarity=0.088  Sum_probs=153.1

Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+|+ +++++..++.|..||..++  ...+..+...+.                  ++++.+.         +.+
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~------------------~l~~~~d---------g~l   82 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQN------------------GHCLNKQ---------GHL   82 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEE------------------EEEECTT---------CCE
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcc------------------eeeECCC---------CcE
Confidence            459999998 6777778899999999877  444543332222                  3333331         666


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEec--C-CCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEEEeCCC
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLS--D-CHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLT  148 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~--~-~h~~~V~~l~~~~~~~~l~s~~-----------------~dg~v~iwd~~~  148 (579)
                      +++...++.|.+||..+++......  . .....+.+++++|+|+++++.+                 ..+.|..+|.. 
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-  161 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence            5555556889999998887643221  1 1123567899999999877732                 13467777755 


Q ss_pred             CceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-CCee---eEEeecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-DHKK---MQKFSGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~  222 (579)
                      ++ +..+..+......++|+|+|+.+++..  +.|++|++. +++.   ...+..+...+.+++++++|+.+++.   ++
T Consensus       162 g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~  237 (296)
T 3e5z_A          162 GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GD  237 (296)
T ss_dssp             SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TT
T ss_pred             CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CC
Confidence            44 344455566789999999999986655  799999997 4544   33343355667789999999866554   67


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      .|.+|+.. ++.     ...+..+.. ...+.|.    .|+++.|++++.+ .+.-++.++.+.
T Consensus       238 ~v~~~~~~-g~~-----~~~~~~~~~-~~~~~f~----~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          238 GVHVLTPD-GDE-----LGRVLTPQT-TSNLCFG----GPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEECTT-SCE-----EEEEECSSC-CCEEEEE----STTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             eEEEECCC-CCE-----EEEEECCCC-ceeEEEE----CCCCCEEEEEcCC-eEEEEEcccccc
Confidence            89999986 332     223333333 5556663    1788989888875 455566655543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=9.6e-14  Score=139.93  Aligned_cols=249  Identities=10%  Similarity=0.053  Sum_probs=151.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEecccccccc---ccccccccccccccCccceEEeeecccccccccCCc
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTET---TSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +.|||||++|++++.++.|++||+.+++....+..+.....   .+.|...  ............|.+.         +.
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~~~~~~~~~~spd---------g~  154 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC--TKLVGIEILKRDWQPL---------TS  154 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCC---------CS
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC--CccccccccccccCCC---------Cc
Confidence            48999999999999999999999998876655443322100   0111100  0000000000111111         33


Q ss_pred             EEEEE-----ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCceeeEe
Q 008058           88 LLVLG-----TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGAD------GMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        88 ~l~~~-----~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~~~~~~~~  155 (579)
                      .++.+     ..+..|.+||+.+++.....  .+...+..+.|+| +++.|+.++.+      ..|.+||+..++.....
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  232 (396)
T 3c5m_A          155 WEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK  232 (396)
T ss_dssp             HHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS
T ss_pred             ceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee
Confidence            33332     34567999999988765333  4667899999999 78877766543      46889998765433322


Q ss_pred             ecC-CCCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCeeeEEeecCCCCEEEEEEec-CCCEEEEEec-------
Q 008058          156 RAS-TKGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHKKMQKFSGHPGAVRFMTFSD-NGKYVLSSAV-------  219 (579)
Q Consensus       156 ~~~-~~~v~~l~~~p~g~~l~~~~-----g~--i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~s~-------  219 (579)
                      ... ...+..++|+|+|+.|+.++     ..  |++||+.+++...... ... .. +.|+| +|+++++++.       
T Consensus       233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~  309 (396)
T 3c5m_A          233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVA  309 (396)
T ss_dssp             CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred             ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeec
Confidence            211 22578899999999877664     24  9999998886543222 222 33 89999 9998877541       


Q ss_pred             --------CCCeEEEEEcCCCccccceeEEeeecCce----------eeEeEEecCCcccCCCcEEEEEEc-CCeEEEE-
Q 008058          220 --------GERYIALWRTDGVKKQSASCVLAMEHPAV----------FMDCRCIDNGGVDDAGLYVLAISE-TGVCYIW-  279 (579)
Q Consensus       220 --------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iw-  279 (579)
                              .+..|++||+.+++..   .+.  .+...          ......|+     |+|++|+.++. ++...+| 
T Consensus       310 ~~~~~~~~~~~~i~~~d~~~~~~~---~l~--~~~~~~~~~~~~~~~~~~~~~~s-----~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          310 DADSYNIENDPFLYVLNTKAKSAQ---KLC--KHSTSWDVLDGDRQITHPHPSFT-----PNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             -----CCCCCCEEEEEETTTTBCC---EEE--ECCCCCCCBTTBSSTTCCCCEEC-----TTSSEEEEEECTTSSCEEEE
T ss_pred             cccccccCCCCcEEEEecccCceE---Ecc--CCCCccccccccccCCCCCceEc-----cCCCeEEEEecCCCCceEEE
Confidence                    2478999999877633   111  12211          12334566     99998888765 5554454 


Q ss_pred             -ECCCce
Q 008058          280 -YGQNIE  285 (579)
Q Consensus       280 -d~~~~~  285 (579)
                       ++.+++
T Consensus       380 ~~~~~~~  386 (396)
T 3c5m_A          380 ADVPESY  386 (396)
T ss_dssp             EECCTTC
T ss_pred             EEEcccc
Confidence             554443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=1.1e-12  Score=129.85  Aligned_cols=213  Identities=10%  Similarity=0.081  Sum_probs=138.2

Q ss_pred             EEccCCCEEEEEe---------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058           12 SFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        12 ~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ++  ||++++...         .++.|.+||+.+++... +    ..+.                  ...|.|.      
T Consensus        21 ~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~------------------~~~~SpD------   69 (347)
T 2gop_A           21 RT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENAT------------------MPRISPD------   69 (347)
T ss_dssp             EE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCE------------------EEEECTT------
T ss_pred             eE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCC------------------CeEECCC------
Confidence            56  899888753         25679999998876533 2    1222                  3344332      


Q ss_pred             ccCCcEEEEEECC---C--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-------------------
Q 008058           83 KLGSSLLVLGTGG---G--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-------------------  138 (579)
Q Consensus        83 ~~~~~~l~~~~~~---g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-------------------  138 (579)
                         +..|+.++.+   +  .|.+|++.+++..... . +.. +.++.|+|||+.|+.++.+                   
T Consensus        70 ---g~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g  143 (347)
T 2gop_A           70 ---GKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDD  143 (347)
T ss_dssp             ---SSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---
T ss_pred             ---CCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecC
Confidence               6667776653   3  3888899888765333 2 223 9999999999998887642                   


Q ss_pred             --------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C--------eEEEEECCCCeeeEEeecCCCC
Q 008058          139 --------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G--------QLKTFNCSDHKKMQKFSGHPGA  201 (579)
Q Consensus       139 --------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g--------~i~vwd~~~~~~~~~~~~h~~~  201 (579)
                              ..|++||+.+++.+..+.. . .+..++|+||| +++++. .        ...+|.+.+++. ..+..+ ..
T Consensus       144 ~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~  218 (347)
T 2gop_A          144 LGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VS  218 (347)
T ss_dssp             ------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ES
T ss_pred             cccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cc
Confidence                    5799999988877455554 3 78899999999 777763 1        234444335543 444444 55


Q ss_pred             EEEEEEecCCCEEEEEecCC-------CeEEEEEcCCCccccceeEEeeecCceeeEe-EEecCCcccCCCcEEEEEEcC
Q 008058          202 VRFMTFSDNGKYVLSSAVGE-------RYIALWRTDGVKKQSASCVLAMEHPAVFMDC-RCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      +..+  +|+|++++.++..+       ..|.+||  +++..     .....+...+.. ..|+      ++ .+++++.+
T Consensus       219 ~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-----~l~~~~~~~~~~~~~~s------dg-~~~~~~~~  282 (347)
T 2gop_A          219 FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-----GILDEVDRGVGQAKIKD------GK-VYFTLFEE  282 (347)
T ss_dssp             EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-----ESSTTCCSEEEEEEEET------TE-EEEEEEET
T ss_pred             eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-----eccccCCcccCCccEEc------Cc-EEEEEecC
Confidence            5554  99999888876322       3677777  33311     112232333443 5563      56 88888999


Q ss_pred             CeEEEEECCC
Q 008058          274 GVCYIWYGQN  283 (579)
Q Consensus       274 g~i~iwd~~~  283 (579)
                      |.+++| +.+
T Consensus       283 ~~~~l~-~~~  291 (347)
T 2gop_A          283 GSVNLY-IWD  291 (347)
T ss_dssp             TEEEEE-EES
T ss_pred             CcEEEE-EcC
Confidence            999999 763

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.58  E-value=1.5e-12  Score=125.10  Aligned_cols=181  Identities=13%  Similarity=0.205  Sum_probs=130.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEec-----CCCCCCEEEEEE-ccCCCEEEEEeC-CCcEEEEeCCCCceeeEeec-
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLS-----DCHPGGVSAISF-ATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRA-  157 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~-----~~h~~~V~~l~~-~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~-  157 (579)
                      +.++++...++.|.+||.. ++.+..+.     .+|...+.++++ .++++.+++... ++.|++|| .+++.+..+.. 
T Consensus        41 g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~  118 (286)
T 1q7f_A           41 NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGAT  118 (286)
T ss_dssp             CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTT
T ss_pred             CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCc
Confidence            6666777788999999987 55544442     134567899999 467765555533 88999999 67777776643 


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +...+.+++++|+|+++++..  +.|++||. .++.+..+.  ++...+..++++|+|+.+++.. .++.|++|+.....
T Consensus       119 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          119 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN-RAHCVKVFNYEGQY  196 (286)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG-GGTEEEEEETTCCE
T ss_pred             cCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEEC-CCCEEEEEcCCCCE
Confidence            335789999999999888765  79999996 455666664  4556789999999998666654 68999999975432


Q ss_pred             cccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCC-eEEEEEC
Q 008058          234 KQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETG-VCYIWYG  281 (579)
Q Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg-~i~iwd~  281 (579)
                            +..+...  ......++++     ++|+++++...++ .|.+||.
T Consensus       197 ------~~~~~~~g~~~~p~~i~~d-----~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          197 ------LRQIGGEGITNYPIGVGIN-----SNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             ------EEEESCTTTSCSEEEEEEC-----TTCCEEEEECSSSCEEEEECT
T ss_pred             ------EEEEccCCccCCCcEEEEC-----CCCCEEEEeCCCCEEEEEECC
Confidence                  1223222  2345567776     8998888887776 9999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=3.4e-12  Score=125.43  Aligned_cols=224  Identities=13%  Similarity=0.115  Sum_probs=147.1

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+|+|++++++..++.|.+||..+++.......+..                  ...+++|.+.         +.++
T Consensus        49 ~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~i~~~~d---------g~l~  101 (333)
T 2dg1_A           49 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA------------------NPAAIKIHKD---------GRLF  101 (333)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSS------------------SEEEEEECTT---------SCEE
T ss_pred             CcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCC------------------CcceEEECCC---------CcEE
Confidence            458999999888888899999999988876543322221                  2334444432         5555


Q ss_pred             EEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecC
Q 008058           90 VLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        90 ~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      ++...+    +.|.+||..++.....+. ..+...+.+++++|+|+.+++...      .+.|..||..+++... +...
T Consensus       102 v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  180 (333)
T 2dg1_A          102 VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN  180 (333)
T ss_dssp             EEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred             EEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence            555555    589999998877542222 234567999999999987776653      3567777766554433 3223


Q ss_pred             CCCeeEEEEccCCCEEEEEC---CeEEEEECCC-CeeeEE--------eecCCCCEEEEEEecCCCEEEEEecCCCeEEE
Q 008058          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~~~~--------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      ...+..++|+|+|+.++.+.   +.|++||..+ +..+..        +.++ ..+..++++++|+.+++.. .++.|.+
T Consensus       181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~-~~~~v~~  258 (333)
T 2dg1_A          181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMY-GQGRVLV  258 (333)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEE-TTTEEEE
T ss_pred             CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEc-CCCEEEE
Confidence            34678999999998665543   7999999964 332221        1222 4678899999998777665 5789999


Q ss_pred             EEcCCCccccceeEEeeecCce------eeEeEEecCCcccCCCcEEEEEEcCC
Q 008058          227 WRTDGVKKQSASCVLAMEHPAV------FMDCRCIDNGGVDDAGLYVLAISETG  274 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~s~~~dg  274 (579)
                      ||.. ++..     ..+..+..      ....++|+     |++..|++++.+|
T Consensus       259 ~d~~-g~~~-----~~~~~~~~~~g~~~~~~~~~~~-----~dg~~L~v~~~~g  301 (333)
T 2dg1_A          259 FNKR-GYPI-----GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSNDI  301 (333)
T ss_dssp             ECTT-SCEE-----EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEECG
T ss_pred             ECCC-CCEE-----EEEEcCCCccccccCcceEEEC-----CCCCEEEEEeCcc
Confidence            9984 3321     22222221      45566676     8887777666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=1.1e-12  Score=128.62  Aligned_cols=234  Identities=9%  Similarity=0.043  Sum_probs=160.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++ +++.+++...++.|.+||..+++.+.++... ..                  ...+++.+.         + .+++
T Consensus        50 ~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~-~~------------------p~~i~~~~~---------g-~lyv   99 (328)
T 3dsm_A           50 VIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF-TS------------------PRYIHFLSD---------E-KAYV   99 (328)
T ss_dssp             EEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC-SS------------------EEEEEEEET---------T-EEEE
T ss_pred             EEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC-CC------------------CcEEEEeCC---------C-eEEE
Confidence            553 3444555556799999999999998877421 11                  112333221         4 4566


Q ss_pred             EE-CCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           92 GT-GGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        92 ~~-~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +. .++.|.+||+.+++....+..+.    ......+++  ++..++.++  .++.|.+||+.+++.+.++... .....
T Consensus       100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~  176 (328)
T 3dsm_A          100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTS  176 (328)
T ss_dssp             EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCC
T ss_pred             EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccc
Confidence            65 78999999999998876654332    114566777  455555555  4889999999999988887653 35678


Q ss_pred             EEEccCCCEEEEECC------------eEEEEECCCCeeeEEeecC-CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          165 MAVSSDGKMLATAAG------------QLKTFNCSDHKKMQKFSGH-PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       165 l~~~p~g~~l~~~~g------------~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ++++|+|++++++.+            .|.+||..+++....+... ......++|+|++++++++.   +.|.+||..+
T Consensus       177 i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~~v~~~d~~t  253 (328)
T 3dsm_A          177 LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN---NDIWRMPVEA  253 (328)
T ss_dssp             CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES---SSEEEEETTC
T ss_pred             eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc---cEEEEEECCC
Confidence            999999998777653            6999999999887777532 23678999999999888764   2899999988


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEE----EcCCeEEEEECCCceeeccc
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAI----SETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~----~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ++.... ..  ..........++++     | ++...++.    ..++.|.+||.+ ++.+..+
T Consensus       254 ~~~~~~-~~--~~~~~~~p~gi~vd-----p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i  308 (328)
T 3dsm_A          254 DRVPVR-PF--LEFRDTKYYGLTVN-----PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF  308 (328)
T ss_dssp             SSCCSS-CS--BCCCSSCEEEEEEC-----TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred             Cceeee-ee--ecCCCCceEEEEEc-----CCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence            764310 11  11113345566776     7 45555555    568899999988 7776554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.56  E-value=1.5e-13  Score=148.71  Aligned_cols=238  Identities=11%  Similarity=0.028  Sum_probs=149.6

Q ss_pred             EEc--cCCCE-EEEEeC-CCcEEEEECC--C-CeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           12 SFS--PALDY-FAICSG-DARIKIWDTL--K-GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        12 ~fs--~dg~~-las~s~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+  |||++ |+.++. +..|.+|+..  + +. ...+.....             .........+.|.+.        
T Consensus        83 ~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-------------~~~~~~~~~~~~spD--------  140 (662)
T 3azo_A           83 AGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-------------VGGGLRWADPVLLPE--------  140 (662)
T ss_dssp             EEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC-------------STTCEEEEEEEEETT--------
T ss_pred             eeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc-------------CCCCccccCcEECCC--------
Confidence            455  99998 887664 5667777765  2 43 333332100             000112345556554        


Q ss_pred             CCcEEEEEECC----------CeEEEEEccC------CeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC--------Cc
Q 008058           85 GSSLLVLGTGG----------GDVLALAVSA------GQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------GM  140 (579)
Q Consensus        85 ~~~~l~~~~~~----------g~i~iwd~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--------g~  140 (579)
                       ++.|++++.+          ..|++||+.+      ++.. .+...+...+..++|+|||++|+.++.+        ..
T Consensus       141 -g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          141 -RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             -TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             -CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence             7778887766          5799999988      5543 4431455678899999999999888755        37


Q ss_pred             EEEEeCC-CC---ceeeEeecCCCCeeEEEEccCCCEEEEEC--C--eEEEEECCCCeeeEEeecCCCC--------EEE
Q 008058          141 VCEIDPL-TG---SLLGKFRASTKGISCMAVSSDGKMLATAA--G--QLKTFNCSDHKKMQKFSGHPGA--------VRF  204 (579)
Q Consensus       141 v~iwd~~-~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g--~i~vwd~~~~~~~~~~~~h~~~--------v~~  204 (579)
                      |++||+. ++   +.......+...+..++|+|||+++++++  +  .|++||+.+++......++...        +..
T Consensus       219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~  298 (662)
T 3azo_A          219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW  298 (662)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred             EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence            9999998 56   44444455577899999999999777776  4  7888887777654333333222        567


Q ss_pred             EEEecCCCEEEEEecCCCeEEEE--EcCCCccccceeEEeeecCceeeEeE-EecCCcccCCCcEEEEEEcCC--eEEEE
Q 008058          205 MTFSDNGKYVLSSAVGERYIALW--RTDGVKKQSASCVLAMEHPAVFMDCR-CIDNGGVDDAGLYVLAISETG--VCYIW  279 (579)
Q Consensus       205 l~~~~~~~~l~s~s~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg--~i~iw  279 (579)
                      ++|+|++++++++. . +.+++|  |+.+++.      ..+..+...+..+ .++     ++...+++++.+.  .|++|
T Consensus       299 ~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~~------~~l~~~~~~~~~~~s~~-----~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          299 FAPLANGLIAVVHG-K-GAAVLGILDPESGEL------VDAAGPWTEWAATLTVS-----GTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             EEECTTSCEEEEEB-S-SSCEEEEEETTTTEE------EECCSSCCEEEEEEEEE-----TTEEEEEEEETTEEEEEEEE
T ss_pred             EeEeCCCEEEEEEE-c-CccEEEEEECCCCcE------EEecCCCCeEEEEEecC-----CCEEEEEEcCCCCCCEEEEE
Confidence            89999999888776 6 888999  5444431      2333333334434 332     3333334444454  46666


Q ss_pred             ECCCcee
Q 008058          280 YGQNIEE  286 (579)
Q Consensus       280 d~~~~~~  286 (579)
                      |..+++.
T Consensus       366 d~~~g~~  372 (662)
T 3azo_A          366 DTVTGRA  372 (662)
T ss_dssp             ETTTCCE
T ss_pred             ECCCCce
Confidence            7666654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=1.8e-12  Score=141.23  Aligned_cols=202  Identities=8%  Similarity=-0.029  Sum_probs=138.2

Q ss_pred             cceEEeeecccccccccCCcEEEEEECCC-----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--
Q 008058           68 YTCMKWLSVDRKKKRKLGSSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--  140 (579)
Q Consensus        68 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~--  140 (579)
                      .....|.|.         ++.|+.+...+     .|++||+.+++....... + ..+.+++|+|||+.|+.++.++.  
T Consensus       127 ~~~~~~SPD---------g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          127 LRGYAFSED---------GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             EEEEEECTT---------SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             EEEEEECCC---------CCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceEEEEeCCCEEEEEEECCccc
Confidence            445666643         67777666543     799999999987654322 2 23678999999999999888766  


Q ss_pred             --------------EEEEeCCCCcee--eEeec--CCCCeeEEEEccCCCEEEEEC-------CeEEEEECCC------C
Q 008058          141 --------------VCEIDPLTGSLL--GKFRA--STKGISCMAVSSDGKMLATAA-------GQLKTFNCSD------H  189 (579)
Q Consensus       141 --------------v~iwd~~~~~~~--~~~~~--~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~------~  189 (579)
                                    |++|++.+++..  ..+..  +...+..+.|+|||++|+.++       ..|++||+.+      +
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999887632  22332  345678999999999888764       3799999986      4


Q ss_pred             e-eeEEeecCCCCEEEEEEecCCCEEEEEecCC---CeEEEEEcCCCccccceeEEeeecCc-eeeEeEEecCCcccCCC
Q 008058          190 K-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE---RYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAG  264 (579)
Q Consensus       190 ~-~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  264 (579)
                      . ....+..+...+.. .|+|+|+.|+..+..+   ..|.+||+.++.......  ...+.. ..+..+.+.     +++
T Consensus       276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~~~~~~~~-----~~~  347 (710)
T 2xdw_A          276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKV--LVPEHEKDVLEWVACV-----RSN  347 (710)
T ss_dssp             SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCEEEEEEEE-----TTT
T ss_pred             ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccee--ccCCCCCCeEEEEEEE-----cCC
Confidence            3 45667777766655 5889999888776433   369999998764211111  122322 355656665     677


Q ss_pred             cEEEEEEcCCe--EEEEECCCceeec
Q 008058          265 LYVLAISETGV--CYIWYGQNIEELR  288 (579)
Q Consensus       265 ~~l~s~~~dg~--i~iwd~~~~~~~~  288 (579)
                      .++++...||.  |++|++.+++.+.
T Consensus       348 ~lv~~~~~~g~~~l~~~~~~~g~~~~  373 (710)
T 2xdw_A          348 FLVLCYLHDVKNTLQLHDLATGALLK  373 (710)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             EEEEEEEECCEEEEEEEECCCCCEEE
Confidence            88888888884  5666776665443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=5.3e-13  Score=132.03  Aligned_cols=218  Identities=10%  Similarity=0.023  Sum_probs=140.9

Q ss_pred             eEEEEccCCCEEEEEeCC---C--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGD---A--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~d---g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||++||+++.+   +  .|.+|++.+++.........                    ...+.|.|.       
T Consensus        62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--------------------~~~~~wspd-------  114 (347)
T 2gop_A           62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--------------------IRSLEWNED-------  114 (347)
T ss_dssp             EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--------------------EEEEEECTT-------
T ss_pred             CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--------------------ccceeECCC-------
Confidence            345999999999988754   3  47888988887654432111                    334555443       


Q ss_pred             cCCcEEEEEEC---------------------------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe
Q 008058           84 LGSSLLVLGTG---------------------------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG  136 (579)
Q Consensus        84 ~~~~~l~~~~~---------------------------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~  136 (579)
                        +..|+.++.                           ...|.+||+.+++.+..+..  . .+..+.|+||| .+++++
T Consensus       115 --g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          115 --SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             --SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEEEE
T ss_pred             --CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEEEe
Confidence              555666653                           25699999999887434433  3 78899999999 777776


Q ss_pred             CCC-------cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeEEeecCC
Q 008058          137 ADG-------MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQKFSGHP  199 (579)
Q Consensus       137 ~dg-------~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~~~~~h~  199 (579)
                      .++       ...+|.+.+++. ..+..+ ..+..+  +|||+.|+.++          ..|++||  +++......+|.
T Consensus       189 ~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~  262 (347)
T 2gop_A          189 HREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD  262 (347)
T ss_dssp             CCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC
T ss_pred             cccccccccccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC
Confidence            542       334443335544 334434 455544  99999887654          2688888  555444445667


Q ss_pred             CCEEE-EEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeE-E
Q 008058          200 GAVRF-MTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVC-Y  277 (579)
Q Consensus       200 ~~v~~-l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i-~  277 (579)
                      ..+.. +.|+ ++ .+++++ .++.+++| +.+++.     .....+ ...+..+.++     |  ..+++++.++.. .
T Consensus       263 ~~~~~~~~~s-dg-~~~~~~-~~~~~~l~-~~~g~~-----~~~~~~-~~~v~~~~~s-----~--~~~~~~~~~~~~~~  325 (347)
T 2gop_A          263 RGVGQAKIKD-GK-VYFTLF-EEGSVNLY-IWDGEI-----KPIAKG-RHWIMGFDVD-----E--IVVYLKETATRLRE  325 (347)
T ss_dssp             SEEEEEEEET-TE-EEEEEE-ETTEEEEE-EESSSE-----EEEECS-SSEEEEEEES-----S--SEEEEEECSSSCCE
T ss_pred             cccCCccEEc-Cc-EEEEEe-cCCcEEEE-EcCCce-----EEEecC-CCeEEeeeee-----C--cEEEEEcCCCChHH
Confidence            78886 8999 88 777766 68999999 874331     122223 4455667776     6  677777777654 7


Q ss_pred             EEECC
Q 008058          278 IWYGQ  282 (579)
Q Consensus       278 iwd~~  282 (579)
                      +|.++
T Consensus       326 l~~~~  330 (347)
T 2gop_A          326 LFTWD  330 (347)
T ss_dssp             EEEES
T ss_pred             heEeC
Confidence            77665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.55  E-value=5.4e-12  Score=132.10  Aligned_cols=193  Identities=14%  Similarity=0.112  Sum_probs=149.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC--CCceeeEeecCCCCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL--TGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~v~  163 (579)
                      +.++++...++.|.++|..+++.+.++..+  ..+..+.|+|||+++++++.|+.|.+||+.  +++.+.++... ....
T Consensus       167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~  243 (567)
T 1qks_A          167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR  243 (567)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred             ceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence            345666667889999999999998777433  467899999999999999999999999996  78888887753 3568


Q ss_pred             EEEEc----cCCCEEEEEC---CeEEEEECCCCeeeEEeec----------CCC-CEEEEEEecCCCEEEEEecCCCeEE
Q 008058          164 CMAVS----SDGKMLATAA---GQLKTFNCSDHKKMQKFSG----------HPG-AVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       164 ~l~~~----p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~----------h~~-~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      .++|+    |||+++++++   ++|.++|..+.+.+.++..          |.. .+..+.+++++..++.....+|.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            99999    6999999887   8999999999998887652          112 5788999998877666666789999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeeccc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                      ++|....+..   .+..+.. ........|+     |+|+++++++ .++.|.++|..+++.+...
T Consensus       324 ~vd~~~~~~~---~v~~i~~-~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          324 LVDYTDLNNL---KTTEISA-ERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             EEETTCSSEE---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             EEecCCCccc---eeeeeec-cccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            9998876432   2222222 2334456676     9999987776 5889999999999866443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=1.3e-12  Score=124.42  Aligned_cols=189  Identities=12%  Similarity=0.125  Sum_probs=146.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-CCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~  164 (579)
                      +++|++++.++.|.+||..+|+.++++..+....+.++.+.|+|+.++  +.++.|+.||. +|+.+..+..+. ..+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            678999999999999999999999888543225789999999999888  35788999998 899999988753 47889


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      +.+.|+|+++++.+   +.|..+|. +++.+.++..      +......+.+.++|+++++.. .++.|..||.. ++..
T Consensus        82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-ATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-TTTEEEEECTT-SCEE
T ss_pred             cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-CCCEEEEECCC-CCEE
Confidence            99999999999875   36666664 6777777642      223455677899999998876 79999999988 6633


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                           .....+..... ....     ++|..+++++.+++|..||.++++.+....
T Consensus       159 -----w~~~~~~~~~~-~~~~-----~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 -----NSVKLSGTPFS-SAFL-----DNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             -----EEEECSSCCCE-EEEC-----TTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             -----EEEECCCCccc-eeEc-----CCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence                 34443333333 3333     799999999888899999999998876553

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=1e-12  Score=142.90  Aligned_cols=236  Identities=9%  Similarity=-0.004  Sum_probs=152.0

Q ss_pred             eEEEEccCCCEEEEE-----eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAIC-----SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~-----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||++||.+     +.+.+|++||+.+|+...  ..+..                ......+.|.+.       
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~----------------~~~~~~~~wspD-------  178 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIE----------------GGKYATPKWTPD-------  178 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBS----------------CCTTCCCEECTT-------
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccC----------------cccccceEEecC-------
Confidence            455999999999944     345689999999887531  10000                001134566654       


Q ss_pred             cCCcEEEEEECCCe-------------EEEEEccCCe----EEEEecCCCCCCEEEEEEccCCCEEEEEeCCC----cEE
Q 008058           84 LGSSLLVLGTGGGD-------------VLALAVSAGQ----LKWRLSDCHPGGVSAISFATHGSCIYSAGADG----MVC  142 (579)
Q Consensus        84 ~~~~~l~~~~~~g~-------------i~iwd~~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg----~v~  142 (579)
                        +..|+.++.+..             |++|++.++.    .+.. ...|...+.++.|+|||++|+.++.++    .|+
T Consensus       179 --g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          179 --SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             --SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred             --CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence              677888887665             9999998876    2222 234556889999999999988877666    677


Q ss_pred             EEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEeecC--CCCEEEEEEecCCCE
Q 008058          143 EIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKFSGH--PGAVRFMTFSDNGKY  213 (579)
Q Consensus       143 iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~--~~~~~~h--~~~v~~l~~~~~~~~  213 (579)
                      +||..+++ ...+..+...+....+ ++|.+++.+.     +.|.+||+.+++.  ...+..|  ...+..+.|+ ++..
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l  332 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL  332 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence            88765554 3445555556666666 5666555443     6899999987653  2344333  4457888888 5556


Q ss_pred             EEEEecCCCeEEEEEcCC-CccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEEE----cCCeEEEEECCCcee
Q 008058          214 VLSSAVGERYIALWRTDG-VKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAIS----ETGVCYIWYGQNIEE  286 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~  286 (579)
                      +++.. .|+..++|.+.. ++.     ...+..+ ...+..+.++     |++..++...    ..++|++||+.+++.
T Consensus       333 v~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          333 SLEYL-KDATSEVRVATLKGKP-----VRTVQLPGVGAASNLMGL-----EDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEE-ETTEEEEEEEETTCCE-----EEECCCSSSSEECCCBSC-----TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEE-ECCEEEEEEEeCCCCe-----eEEecCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66655 689888886652 221     1222222 3334444555     7887776433    357899999988753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=2e-12  Score=140.48  Aligned_cols=236  Identities=10%  Similarity=-0.006  Sum_probs=146.9

Q ss_pred             EccCCCEEEEEeCCC---cEEEE--ECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           13 FSPALDYFAICSGDA---RIKIW--DTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        13 fs~dg~~las~s~dg---~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .+|+|++++....++   .-.+|  +...+.....+. ...          +..+| ........|.|.         ++
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d-~~~----------~a~~~-~~~~~~~~~SPD---------G~  133 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLD-PNG----------WSKDG-TVSLGTWAVSWD---------GK  133 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEEC-GGG----------SSSSS-CEEEEEEEECTT---------SS
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEc-hHH----------hccCC-CEEEEEEEECCC---------CC
Confidence            458999988877643   33445  444443322221 000          01122 123445556543         66


Q ss_pred             EEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008058           88 LLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGV--SAISFATHGSCIYSAGADGM-------------VCEIDPL  147 (579)
Q Consensus        88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~~~dg~-------------v~iwd~~  147 (579)
                      .|+.+..     +..|++||+.+++.+.   ..+...+  .+++|+|||+.|+.++.|..             |++|++.
T Consensus       134 ~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~  210 (695)
T 2bkl_A          134 KVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLG  210 (695)
T ss_dssp             EEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETT
T ss_pred             EEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECC
Confidence            6664432     3469999999998641   1122222  68999999999999988776             9999998


Q ss_pred             CCc----eeeEeecCCCCeeEEEEccCCCEEEEEC--C----eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          148 TGS----LLGKFRASTKGISCMAVSSDGKMLATAA--G----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       148 ~~~----~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g----~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      ++.    .+.....+...+.++.|+|||++|+.++  +    .|++|+..+++ ...+..+...+....+ ++|. ++..
T Consensus       211 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~  287 (695)
T 2bkl_A          211 TEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVL  287 (695)
T ss_dssp             SCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred             CCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEE
Confidence            876    2223333445788999999999888765  4    77888766554 4455556666666666 6666 5555


Q ss_pred             ec---CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          218 AV---GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       218 s~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      +.   .++.|.+||+.++.......+. ..++...+..+.+.      ++..+++...||..++|.++
T Consensus       288 s~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          288 TDEGAPRQRVFEVDPAKPARASWKEIV-PEDSSASLLSVSIV------GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             ECTTCTTCEEEEEBTTBCSGGGCEEEE-CCCSSCEEEEEEEE------TTEEEEEEEETTEEEEEEEE
T ss_pred             ECCCCCCCEEEEEeCCCCCccCCeEEe-cCCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            53   2578999999876431111111 12224455555664      56788888999988888654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=9.5e-12  Score=120.06  Aligned_cols=189  Identities=8%  Similarity=-0.018  Sum_probs=132.1

Q ss_pred             ceEEeeecccccccccCCc-EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           69 TCMKWLSVDRKKKRKLGSS-LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~-~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      ..++|.+.         ++ +++++..++.|..||..++  ...+ ..+...+.+++++|+|+++++...++.|.+||..
T Consensus        31 eg~~~d~~---------g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           31 EGPVYVPA---------RSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEEEEGG---------GTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             cCCeEeCC---------CCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            35666654         44 7888888999999999988  3333 3466789999999999987777677899999998


Q ss_pred             CCceeeEeecC----CCCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEE
Q 008058          148 TGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRF  204 (579)
Q Consensus       148 ~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v~~  204 (579)
                      +++........    ...+..++++|+|+++++..                   +.|+.++.. ++ +..+..+......
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g  176 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG  176 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence            88754433221    22567899999999888721                   356666654 43 4455566777899


Q ss_pred             EEEecCCCEEEEEecCCCeEEEEEcC-CCcc-ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          205 MTFSDNGKYVLSSAVGERYIALWRTD-GVKK-QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       205 l~~~~~~~~l~s~s~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      ++|+|+++.+++. ..++.|.+|++. .++. . ....+  .........++++     ++|++.++.  ++.|.+||.+
T Consensus       177 i~~s~dg~~lv~~-~~~~~i~~~~~~~~g~~~~-~~~~~--~~~~~~p~~i~~d-----~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          177 LAFLPSGNLLVSD-TGDNATHRYCLNARGETEY-QGVHF--TVEPGKTDGLRVD-----AGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             EEECTTSCEEEEE-TTTTEEEEEEECSSSCEEE-EEEEE--CCSSSCCCSEEEB-----TTSCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCCEEEEe-CCCCeEEEEEECCCCcCcC-CCeEe--eCCCCCCCeEEEC-----CCCCEEEEc--CCeEEEECCC
Confidence            9999999988544 468899999997 3332 1 01122  2223334556776     888866555  7889999864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=1.5e-11  Score=119.55  Aligned_cols=237  Identities=14%  Similarity=0.131  Sum_probs=154.6

Q ss_pred             EEEEccCCCEEEE-------EeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058           10 LTSFSPALDYFAI-------CSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        10 ~~~fs~dg~~las-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|+++|+++++       +..++.|.+||..+++... +....            ..++ ......+.+.+.      
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~------------~~~~-~~~~~~i~~~~~------   81 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPE------------VNGY-GGIPAGCQCDRD------   81 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCE------------ETTE-ECCEEEEEECSS------
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecc------------cCCC-CCCCceEEEecC------
Confidence            4589999988777       5678899999988887643 21100            0011 112234444432      


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEE-ecC--C-CCCCEEEEEEccCCCEEEEEeCC---------------CcEEE
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSD--C-HPGGVSAISFATHGSCIYSAGAD---------------GMVCE  143 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~--~-h~~~V~~l~~~~~~~~l~s~~~d---------------g~v~i  143 (579)
                         +..+.+++..+.|.+||.. ++.... ...  + ....+.+++++++|+.+++...+               +.|..
T Consensus        82 ---~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           82 ---ANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             ---SSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             ---CCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence               2456677766689999998 765422 111  1 12358899999999877776555               57888


Q ss_pred             EeCCCCceeeEeecCCCCeeEEEEc----cCCCEEEEE-C--CeEEEEECC-CCe-----eeEEeecCC-CCEEEEEEec
Q 008058          144 IDPLTGSLLGKFRASTKGISCMAVS----SDGKMLATA-A--GQLKTFNCS-DHK-----KMQKFSGHP-GAVRFMTFSD  209 (579)
Q Consensus       144 wd~~~~~~~~~~~~~~~~v~~l~~~----p~g~~l~~~-~--g~i~vwd~~-~~~-----~~~~~~~h~-~~v~~l~~~~  209 (579)
                      ||.. ++..... .+......++++    |+|+.++.+ .  +.|.+||.. +++     ....+.++. ..+..+++++
T Consensus       158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~  235 (314)
T 1pjx_A          158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE  235 (314)
T ss_dssp             ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred             ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence            8865 5543332 233456889999    999766554 3  799999986 444     233344444 5678999999


Q ss_pred             CCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058          210 NGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       210 ~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  283 (579)
                      +|+.+++.. .++.|.+||..+++..     .....+......++++     ++|++|++++ .++.|..|+...
T Consensus       236 ~G~l~v~~~-~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~-----~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          236 DNNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TCCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCEEEEEc-CCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEEC-----CCCCEEEEEeCCCCeEEEEeCCC
Confidence            998877765 5889999998865533     1223333455667776     8998665554 568999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.46  E-value=1.8e-11  Score=119.92  Aligned_cols=223  Identities=10%  Similarity=0.026  Sum_probs=151.5

Q ss_pred             CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEcc
Q 008058           25 GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVS  104 (579)
Q Consensus        25 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~  104 (579)
                      .++.|.+||..+++....+....   +.         ..+......+...          ++.+.++...++.|.+||..
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~---n~---------~~lg~~~~~i~~~----------~~~lyv~~~~~~~v~viD~~   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRA---NG---------FKLGDVAQSMVIR----------DGIGWIVVNNSHVIFAIDIN   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHH---HS---------SCCBSCEEEEEEE----------TTEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEECCCCEEhhhhHhhh---cC---------cccCccceEEEEE----------CCEEEEEEcCCCEEEEEECc
Confidence            37899999999998765432100   00         0001111122221          14445555567899999999


Q ss_pred             CCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCC-----CCeeEEEEccCCCEEEEE-
Q 008058          105 AGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRAST-----KGISCMAVSSDGKMLATA-  177 (579)
Q Consensus       105 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~~~p~g~~l~~~-  177 (579)
                      +++.+.++.  .......++++++++ ++.+. .++.|.+||+.+++....+....     .....+++ .+++++++. 
T Consensus        73 t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           73 TFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             TCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             ccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcC
Confidence            999987773  346789999999984 55554 78999999999998887776433     14567777 455555554 


Q ss_pred             --CCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeEEeeec
Q 008058          178 --AGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEH  245 (579)
Q Consensus       178 --~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~  245 (579)
                        ++.|.+||..+++.+.++.... ....+.++|+|++++++. .+          +.|.+||..+++..   .......
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~-~~~~~~~~~~~~~~v~~id~~t~~v~---~~~~~~~  223 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITD-GGYEGSPYGYEAPSLYRIDAETFTVE---KQFKFKL  223 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBC-CBCTTCSSCBCCCEEEEEETTTTEEE---EEEECCT
T ss_pred             CCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEEC-CCccCCccccCCceEEEEECCCCeEE---EEEecCC
Confidence              2799999999999888876433 457899999998766654 44          78999999887633   1122211


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                       ......++++     |++++++++..  .|.+||..+++.
T Consensus       224 -g~~p~~la~~-----~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          224 -GDWPSEVQLN-----GTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             -TCCCEEEEEC-----TTSCEEEEESS--SEEEEETTCSSC
T ss_pred             -CCCceeEEEe-----cCCCEEEEEcc--EEEEEECCCCce
Confidence             2234567776     88999888765  899999877654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.45  E-value=1.7e-10  Score=111.02  Aligned_cols=232  Identities=8%  Similarity=-0.014  Sum_probs=153.8

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .+++++++|+++++...++.|.+||.. +.... +.....                ......+++.+.         +.+
T Consensus        18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~----------------~~~~~~i~~~~~---------g~l   70 (299)
T 2z2n_A           18 YGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTP----------------DAKVMCLTISSD---------GEV   70 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSST----------------TCCEEEEEECTT---------SCE
T ss_pred             cceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcc----------------cCceeeEEECCC---------CCE
Confidence            455999999977766667899999987 55432 221100                011223333321         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||.. ++............+.++++.++|+.+++...++.|..||. +++.... .......+.++++
T Consensus        71 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~  148 (299)
T 2z2n_A           71 WFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITL  148 (299)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence            5555557889999986 44321112234567999999999987777777889999998 5654332 2223457899999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|+++++..  +.|..||. +++.... +..+...+..++++++|+.+++.. .++.|.+|+. +++..    .....
T Consensus       149 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~  221 (299)
T 2z2n_A          149 GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEIT----EFKIP  221 (299)
T ss_dssp             CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred             cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEE----EEECC
Confidence            99998888775  79999998 6654432 333456688999999998766554 5789999998 54422    12222


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      ........+.++     ++|...++...++.|..||.
T Consensus       222 ~~~~~~~~i~~~-----~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          222 TPNARPHAITAG-----AGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             STTCCEEEEEEC-----STTCEEEEETTTTEEEEEET
T ss_pred             CCCCCceeEEEC-----CCCCEEEeccCCceEEEECC
Confidence            233445566676     78886665557889999987

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.44  E-value=1.4e-10  Score=111.89  Aligned_cols=200  Identities=16%  Similarity=0.142  Sum_probs=132.3

Q ss_pred             eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008058           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  149 (579)
                      ...|.+.+        +.++++...++.|+.||..+++.. .+  .....+.+++++|+|+++++ . ++.|.+||..++
T Consensus        17 gp~w~~~~--------~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           17 SPVWEEVS--------NSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             EEEEETTT--------TEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             CCeEECCC--------CEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            56676543        566777777889999999988763 22  23467999999999995444 4 567999999887


Q ss_pred             ceeeEeecC----CCCeeEEEEccCCCEEEEEC-----------CeEEEEECCC-CeeeEEeecCCCCEEEEEEecCCCE
Q 008058          150 SLLGKFRAS----TKGISCMAVSSDGKMLATAA-----------GQLKTFNCSD-HKKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       150 ~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      +........    ...++.++++|+|+++++..           ....+|.+.. ++. ..+..+....+.++|+|+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCE
Confidence            654332221    23578999999999777652           1234444432 333 233334455789999999998


Q ss_pred             EEEEecCCCeEEEEEcC--CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          214 VLSSAVGERYIALWRTD--GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       214 l~s~s~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      ++.+...++.|.+|++.  ++..........+.........++++     ++|++.++...++.|..||.++++.+.
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-----~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID-----AEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB-----TTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC-----CCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            87666568899999974  44322111222332223345666776     889877777778899999987776543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.42  E-value=3.6e-11  Score=131.62  Aligned_cols=236  Identities=11%  Similarity=0.018  Sum_probs=148.1

Q ss_pred             eEEEEccCCCEEEEEeCC-----CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGD-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      -.++|||||++||.++.+     .+|++||+.+|+.+.... ..                  .....+.|.+.       
T Consensus       166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~------------------~~~~~~~wspD-------  219 (741)
T 1yr2_A          166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KW------------------VKFSGLAWLGN-------  219 (741)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EE------------------EESCCCEESTT-------
T ss_pred             EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CC------------------ceeccEEEECC-------
Confidence            345999999999987653     369999999998754211 00                  01124556542       


Q ss_pred             cCCcEEEEEECCC--------------eEEEEEccCCeE--EEEe-cCCCCCCEEEEEEccCCCEEEEEeCCC-----cE
Q 008058           84 LGSSLLVLGTGGG--------------DVLALAVSAGQL--KWRL-SDCHPGGVSAISFATHGSCIYSAGADG-----MV  141 (579)
Q Consensus        84 ~~~~~l~~~~~~g--------------~i~iwd~~~~~~--~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v  141 (579)
                         +.|+.++.++              .|++|++.++..  ...+ ...+...+.++.|+|||++|+..+.++     .|
T Consensus       220 ---~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          220 ---DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV  296 (741)
T ss_dssp             ---SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred             ---CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence               2355555443              399999977652  1111 123334689999999999988777544     89


Q ss_pred             EEEeCCCC--ceeeEeecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCC--eeeEEeecCCCCEEEEEEecCC
Q 008058          142 CEIDPLTG--SLLGKFRASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNG  211 (579)
Q Consensus       142 ~iwd~~~~--~~~~~~~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~  211 (579)
                      ++||+.++  +....+..+...+.... +|+|+.|+..+      +.|.+||+.++  +....+..+...+..+.|+ ++
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~  374 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN  374 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred             EEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence            99999877  31455555555555543 48888877654      46999999874  3333445555556677877 44


Q ss_pred             CEEEEEecCCCeEEEEEcC-CCccccceeEEeeec-CceeeEeEEecCCcccCCCcEEEEE-E---cCCeEEEEECCCce
Q 008058          212 KYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAI-S---ETGVCYIWYGQNIE  285 (579)
Q Consensus       212 ~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~-~---~dg~i~iwd~~~~~  285 (579)
                      ..+++.. .|+..++|.+. .++.     ...+.. ....+....++     |++..|+.. +   ..++|++||+.+++
T Consensus       375 ~lv~~~~-~dg~~~l~~~~~~g~~-----~~~l~~~~~~~v~~~~~s-----~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          375 RLFASYI-HDAKSQVLAFDLDGKP-----AGAVSLPGIGSASGLSGR-----PGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEE-ETTEEEEEEEETTSCE-----EEECBCSSSCEEEEEECC-----BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEE-ECCEEEEEEEeCCCCc-----eeeccCCCCeEEEEeecC-----CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            4555554 68887777654 2221     122322 23344556665     777755533 2   35799999998876


Q ss_pred             e
Q 008058          286 E  286 (579)
Q Consensus       286 ~  286 (579)
                      .
T Consensus       444 ~  444 (741)
T 1yr2_A          444 T  444 (741)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.40  E-value=2.3e-10  Score=115.42  Aligned_cols=233  Identities=11%  Similarity=0.028  Sum_probs=150.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|+|+|+++++...++.|++||..++...........                   . +++|.+.         +..
T Consensus       134 ~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-------------------~-~ia~~~~---------g~~  184 (409)
T 3hrp_A          134 WGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-------------------G-KPAVTKD---------KQR  184 (409)
T ss_dssp             EEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-------------------C-BCEECTT---------SSE
T ss_pred             eEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-------------------C-ceeEecC---------CCc
Confidence            4569999999777777789999999988877654432111                   1 1344332         667


Q ss_pred             EEEEECCC--eEEEEEccCCeEEEEe---cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eecCC
Q 008058           89 LVLGTGGG--DVLALAVSAGQLKWRL---SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAST  159 (579)
Q Consensus        89 l~~~~~~g--~i~iwd~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~~  159 (579)
                      ++++..++  .|.+|+...+.....+   ...+...+.+++++|++..|+.+..++.|+.||..++.....    ..++.
T Consensus       185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~  264 (409)
T 3hrp_A          185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL  264 (409)
T ss_dssp             EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred             EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence            78877765  7999998876543222   122446678999999666677777889999999987753222    12222


Q ss_pred             CCe-e-EEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCC---------------CCEEEEEEecCCCEEEEEec
Q 008058          160 KGI-S-CMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHP---------------GAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       160 ~~v-~-~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~---------------~~v~~l~~~~~~~~l~s~s~  219 (579)
                      ..- . .++|+|+ +.++++-.  +.|+.|+....  +..+.++.               .....++++|+|+.+++ ..
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva-d~  341 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV-DG  341 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE-ET
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE-eC
Confidence            221 3 9999996 54444444  79999987643  33444432               34789999999985544 44


Q ss_pred             -CCCeEEEEEcCCCccccceeEEeeec------------CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          220 -GERYIALWRTDGVKKQSASCVLAMEH------------PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       220 -~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                       .++.|+.|++.++...   .+.....            .-.....++++     ++|.++++-..+++|+.+++
T Consensus       342 ~~~~~I~~~~~~~G~v~---~~~g~~~~~g~~~g~~~~~~~~~P~giavd-----~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYVS---TVAGQVDVASQIDGTPLEATFNYPYDICYD-----GEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCEEEEEETTTTEEE---EEEECTTCBSCCCBSTTTCCBSSEEEEEEC-----SSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCEEEEEECCCCEEE---EEeCCCCCCCcCCCChhceEeCCceEEEEc-----CCCCEEEEECCCCeEEEEEe
Confidence             5889999997766422   1111000            01224556665     77777777777788887764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=5e-10  Score=107.70  Aligned_cols=233  Identities=8%  Similarity=0.024  Sum_probs=148.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++++|+++++...++.|..||.. ++. ..+....               . ......+.+.+.         +.+
T Consensus        60 ~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~---------------~-~~~~~~i~~~~~---------g~l  112 (299)
T 2z2n_A           60 MCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN---------------P-DSAPYGITEGPN---------GDI  112 (299)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred             eeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC---------------c-CCCceeeEECCC---------CCE
Confidence            455899999987777768889999976 443 2222100               0 011223333321         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||. +++........+...+.++++.++|+..++...++.|..||. +++.... .......+.++++
T Consensus       113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  190 (299)
T 2z2n_A          113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITK  190 (299)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEE
Confidence            555556788999998 665543333334567899999999987777767789999998 6665432 2333456889999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|++.++..  +.|.+||. +++.... ...+...+.+++++++|+.+++.. .++.|..||.. +...    .+...
T Consensus       191 ~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~~-g~~~----~~~~~  263 (299)
T 2z2n_A          191 GNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTSN-NIIE----EYPIQ  263 (299)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEETT-TEEE----EEECS
T ss_pred             CCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc-CCceEEEECCC-CceE----EEeCC
Confidence            99999877774  79999998 6654321 233456789999999998666553 57899999983 3211    12222


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ........+.+      ++|...++.. .+.+..++.++.
T Consensus       264 ~~~~~~~~i~~------~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          264 IKSAEPHGICF------DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSSCCEEEEEE------CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCccceEEe------cCCCEEEEec-CCcEEEEEcCcc
Confidence            22223333443      3666555544 677888876654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=1e-09  Score=109.19  Aligned_cols=186  Identities=8%  Similarity=-0.109  Sum_probs=124.4

Q ss_pred             EEccCCCEEEEEeC--CC---cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058           12 SFSPALDYFAICSG--DA---RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        12 ~fs~dg~~las~s~--dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      ...|+++++.....  .+   +|.+||..+++.+..+.....+  .+.++++                           +
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD---------------------------g   77 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS---------------------------G   77 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC---------------------------C
Confidence            45688887776653  22   8899999999988777643222  4555554                           7


Q ss_pred             cEEEEEE----------CCCeEEEEEccCCeEEEEecCC------CCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCC
Q 008058           87 SLLVLGT----------GGGDVLALAVSAGQLKWRLSDC------HPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLT  148 (579)
Q Consensus        87 ~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~  148 (579)
                      +.++++.          .++.|.+||..+.+.+.++..+      +......+.|+|||++|+.++.  ++.|.++| .+
T Consensus        78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            7777776          3577999999998877665322      0123568999999999998874  57899999 99


Q ss_pred             CceeeE-eecCCCCeeEEEEccCCCEE-EEEC--CeEEEEECCCCeeeEEee-----cCCCCE-EEEEEecCCCEEEEEe
Q 008058          149 GSLLGK-FRASTKGISCMAVSSDGKML-ATAA--GQLKTFNCSDHKKMQKFS-----GHPGAV-RFMTFSDNGKYVLSSA  218 (579)
Q Consensus       149 ~~~~~~-~~~~~~~v~~l~~~p~g~~l-~~~~--g~i~vwd~~~~~~~~~~~-----~h~~~v-~~l~~~~~~~~l~s~s  218 (579)
                      ++.+.. +....    ++.+.|+++.. ++.+  |.+.++|. +++.+....     ....++ ....+.+++..++..+
T Consensus       157 ~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  231 (373)
T 2mad_H          157 GSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV  231 (373)
T ss_pred             CCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence            988877 65322    34556666432 3332  89999999 877663321     112222 2346677766555555


Q ss_pred             cCCCeEEEEEcCCCc
Q 008058          219 VGERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~  233 (579)
                       .++.+.+.|+....
T Consensus       232 -~~~~v~vid~~~~~  245 (373)
T 2mad_H          232 -YSGKILQADISAAG  245 (373)
T ss_pred             -CCceEEEEeccCCc
Confidence             57899999987653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=5.1e-11  Score=130.38  Aligned_cols=184  Identities=12%  Similarity=0.016  Sum_probs=121.7

Q ss_pred             CcEEEEEECC-C----eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc--------------EEEEeC
Q 008058           86 SSLLVLGTGG-G----DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM--------------VCEIDP  146 (579)
Q Consensus        86 ~~~l~~~~~~-g----~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~--------------v~iwd~  146 (579)
                      ++.|+.++.+ |    .|++||+.+++.+....  +...+.+++|+|| +.|+.++.++.              |++|++
T Consensus       174 G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~l  250 (741)
T 1yr2_A          174 GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRL  250 (741)
T ss_dssp             SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEET
T ss_pred             CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEEC
Confidence            6667766544 3    59999999998764321  1122357899999 98888876654              899999


Q ss_pred             CCCce--eeEeec--CCCCeeEEEEccCCCEEEEEC--C-----eEEEEECCCC--eeeEEeecCCCCEEEEEEecCCCE
Q 008058          147 LTGSL--LGKFRA--STKGISCMAVSSDGKMLATAA--G-----QLKTFNCSDH--KKMQKFSGHPGAVRFMTFSDNGKY  213 (579)
Q Consensus       147 ~~~~~--~~~~~~--~~~~v~~l~~~p~g~~l~~~~--g-----~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~  213 (579)
                      .++..  ...+..  +...+..+.|+|||++|+..+  +     .|++||+.++  +....+..+...+.... +|+|+.
T Consensus       251 gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~  329 (741)
T 1yr2_A          251 GTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQ  329 (741)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred             CCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCE
Confidence            77752  223332  223588999999999888665  2     8999999887  31556666665555553 488888


Q ss_pred             EEEEecC---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          214 VLSSAVG---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       214 l~s~s~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      |+..+..   ++.|.+||+.++. ..  ......+....+..+.+.      ++..+++...||..+||..+
T Consensus       330 l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~~~l~~~~~~------~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          330 LWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESKDNLESVGIA------GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCSSEEEEEEEE------BTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCCCeEEEEEEE------CCEEEEEEEECCEEEEEEEe
Confidence            8887632   3459999987742 11  111223444445545553      56778888889987777543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.38  E-value=1e-09  Score=109.18  Aligned_cols=241  Identities=12%  Similarity=0.071  Sum_probs=153.1

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|||||++++.+.          .++.|.+||..+++.+..+........           ........+.|.+.    
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~-----------~~g~~p~~~~~spD----  135 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------DVGPYSWMNANTPN----  135 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc-----------ccCCCccceEECCC----
Confidence            49999999998876          367899999999888877653200000           00000112333332    


Q ss_pred             ccccCCcEEEEEEC--CCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           81 KRKLGSSLLVLGTG--GGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        81 ~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                           +++|+++..  ++.|.++| .+++.+.. +..  ..   ++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus       136 -----G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~  203 (373)
T 2mad_H          136 -----NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL  203 (373)
T ss_pred             -----CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe
Confidence                 777888774  47799999 99988766 532  12   24455655 34667778999999999 887663322


Q ss_pred             -----cCCCC-eeEEEEccCCCE-EEEEC-CeEEEEECCCCe--eeEEeec----------CCCCEEEEEEecCCCEEEE
Q 008058          157 -----ASTKG-ISCMAVSSDGKM-LATAA-GQLKTFNCSDHK--KMQKFSG----------HPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       157 -----~~~~~-v~~l~~~p~g~~-l~~~~-g~i~vwd~~~~~--~~~~~~~----------h~~~v~~l~~~~~~~~l~s  216 (579)
                           ....+ .....+.+++.. ++... +.+.+.|+.++.  .+..+.-          .......+.++|+++.+++
T Consensus       204 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEE
Confidence                 11122 123456666544 33334 899999987552  2333321          1122445789999988877


Q ss_pred             Eec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEE-cCCeEEEEECCCce
Q 008058          217 SAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       217 ~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~dg~i~iwd~~~~~  285 (579)
                      +..         .++.|.++|..+.+..     ..+.... ....+.|+     |||+ .++++. .++.|.+||..+++
T Consensus       284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv-----~~i~~g~-~p~~i~~s-----~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EeccCCcccccCCCCeEEEEECCCCEEE-----EEEECCC-CcCeEEEC-----CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            642         1357999999887643     2333222 23456676     9999 777777 48999999999998


Q ss_pred             eecc
Q 008058          286 ELRN  289 (579)
Q Consensus       286 ~~~~  289 (579)
                      .+..
T Consensus       353 vv~~  356 (373)
T 2mad_H          353 QDQS  356 (373)
T ss_pred             EEee
Confidence            8765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=1e-10  Score=126.78  Aligned_cols=234  Identities=12%  Similarity=0.062  Sum_probs=150.2

Q ss_pred             EEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           10 LTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++|||||++||.+.     .+.+|++||+.+|+.+....  .                 ......+.|. .        
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~-----------------~~k~~~~~Ws-D--------  184 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K-----------------DVKFSGISWL-G--------  184 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E-----------------EEESCCCEEE-T--------
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C-----------------CceeccEEEe-C--------
Confidence            348999999999643     23579999999998654210  0                 0012345565 3        


Q ss_pred             CCcEEEEEECCC-------------eEEEEEccCCeE--EEEe-cCC-CCCCEEEEEEccCCCEEEEEeC----CCcEEE
Q 008058           85 GSSLLVLGTGGG-------------DVLALAVSAGQL--KWRL-SDC-HPGGVSAISFATHGSCIYSAGA----DGMVCE  143 (579)
Q Consensus        85 ~~~~l~~~~~~g-------------~i~iwd~~~~~~--~~~~-~~~-h~~~V~~l~~~~~~~~l~s~~~----dg~v~i  143 (579)
                       ++.|+.++.+.             .|++|++.++..  ...+ ... |...+.++.|+|||++|+....    +..|++
T Consensus       185 -g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          185 -NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYV  263 (693)
T ss_dssp             -TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEE
T ss_pred             -CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEE
Confidence             56677777663             399999987642  1111 122 4456789999999998755432    248999


Q ss_pred             EeCCCCc-eeeEeecCCCCeeEEEEccCCCEEE-EEC-----CeEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEE
Q 008058          144 IDPLTGS-LLGKFRASTKGISCMAVSSDGKMLA-TAA-----GQLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       144 wd~~~~~-~~~~~~~~~~~v~~l~~~p~g~~l~-~~~-----g~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l  214 (579)
                      +|+.++. ....+..+....... ++++|..|+ .+.     +.|..+|+.++..  ...+..|...+.  .|++++++|
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence            9998764 445566566555554 666666554 443     5799999988654  456666766665  899999998


Q ss_pred             EEEecCCC--eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC----CeEEEEECCCce
Q 008058          215 LSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET----GVCYIWYGQNIE  285 (579)
Q Consensus       215 ~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~  285 (579)
                      +.....++  .|++|++..+...    ...+.... .+....++     +++..++....+    ++++.||+.+++
T Consensus       341 v~~~~~~g~~~l~~~d~~g~~~~----~l~~p~~~-~~~~~~~~-----~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          341 FAEYMVDATARVEQFDYEGKRVR----EVALPGLG-SVSGFNGK-----HDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEE----EECCSSSS-EEEECCCC-----TTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCeeEEEEEECCCCeeE----EeecCCCc-eEEeeecC-----CCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            88775555  6888888754321    12222222 23333333     677766666554    799999988765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.36  E-value=3e-10  Score=111.55  Aligned_cols=239  Identities=13%  Similarity=0.128  Sum_probs=158.3

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEecccc-------ccccccccccccccccccCccceEEe
Q 008058           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIA-------STETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +++||||++++.++          .++.|.+||..+++.+.++....       .....+.|+++               
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD---------------  147 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD---------------  147 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT---------------
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC---------------
Confidence            49999999887765          36789999999999988875322       12333444444               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-Cc
Q 008058           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GS  150 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~  150 (579)
                                  +++++++..  ++.|.++|+.+++.+.++...   .. ...+....+.+++.+.||.+.+.++.+ ++
T Consensus       148 ------------Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~---g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~  211 (386)
T 3sjl_D          148 ------------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP---DC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT  211 (386)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECC---SE-EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred             ------------CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC---Cc-ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence                        777888764  688999999999998777422   12 223333456677888899999999876 55


Q ss_pred             eeeEeecC----CCCe-eEEEEc-cCCCEEEEEC-CeEEEEECCCCe--eeEEee----------cCCCCEEEEEEecCC
Q 008058          151 LLGKFRAS----TKGI-SCMAVS-SDGKMLATAA-GQLKTFNCSDHK--KMQKFS----------GHPGAVRFMTFSDNG  211 (579)
Q Consensus       151 ~~~~~~~~----~~~v-~~l~~~-p~g~~l~~~~-g~i~vwd~~~~~--~~~~~~----------~h~~~v~~l~~~~~~  211 (579)
                      ...+...+    ..++ ....|. ++|++++... |.|++.|+.+..  .+..+.          ........++++|++
T Consensus       212 v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~  291 (386)
T 3sjl_D          212 PEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL  291 (386)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred             EEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence            43322111    1222 224664 7887766666 999999997653  333332          011233457789999


Q ss_pred             CEEEEEecC---------CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEEc-CCeEEEEE
Q 008058          212 KYVLSSAVG---------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAISE-TGVCYIWY  280 (579)
Q Consensus       212 ~~l~s~s~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~-dg~i~iwd  280 (579)
                      +.++.....         .+.|.+.|+.+.+..   .......   ....+.++     +|++ +|+++.. ++.|.++|
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~---~~i~vg~---~~~~lavs-----~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL---AKFEMGH---EIDSINVS-----QDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---EEEEEEE---EECEEEEC-----SSSSCEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEE---EEEECCC---CcceEEEC-----CCCCeEEEEEcCCCCeEEEEE
Confidence            888776421         257999999998754   2222222   33456666     8986 6777654 89999999


Q ss_pred             CCCceeecccC
Q 008058          281 GQNIEELRNTK  291 (579)
Q Consensus       281 ~~~~~~~~~~~  291 (579)
                      ..+++.+++.+
T Consensus       361 ~~t~k~~~~i~  371 (386)
T 3sjl_D          361 AESGEELRSVN  371 (386)
T ss_dssp             TTTCCEEEEEC
T ss_pred             CCCCcEEEEec
Confidence            99999887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.36  E-value=4.5e-10  Score=109.07  Aligned_cols=191  Identities=10%  Similarity=0.077  Sum_probs=124.9

Q ss_pred             CcEEEE-------EECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058           86 SSLLVL-------GTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATH-GSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~-------~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                      +.++++       ++.++.|.+||..+++......   .++...+.+++++++ |+ ++.++..+.|.+||.. ++....
T Consensus        29 g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~~~d~~-g~~~~~  106 (314)
T 1pjx_A           29 GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLLVVQTD-GTFEEI  106 (314)
T ss_dssp             SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEEEEETT-SCEEEC
T ss_pred             CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEEEEeCC-CCEEEE
Confidence            555555       4778899999998887642221   124567999999999 65 4444445579999987 665432


Q ss_pred             -eec----CCCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEe----
Q 008058          155 -FRA----STKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS----  208 (579)
Q Consensus       155 -~~~----~~~~v~~l~~~p~g~~l~~~~-----------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~----  208 (579)
                       ...    ....+.+++++|+|+++++..                 +.|..||.. ++... +..+......++|+    
T Consensus       107 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d  184 (314)
T 1pjx_A          107 AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMND  184 (314)
T ss_dssp             CSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTT
T ss_pred             EeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccC
Confidence             221    123588999999999888775                 256667665 54433 33344557889999    


Q ss_pred             cCCCEEEEEecCCCeEEEEEcC-CCccccceeEEeeecCc-eeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          209 DNGKYVLSSAVGERYIALWRTD-GVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      |+++.++.+...++.|.+|+.. .++.........+.... .....++++     ++|...++...++.|.+||.++++
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-----~~G~l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-----CCCCEEEEEcCCCEEEEEcCCCCc
Confidence            9997766665467899999986 33221111112222221 334556676     889888887788999999876553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=1.9e-09  Score=103.71  Aligned_cols=232  Identities=10%  Similarity=0.039  Sum_probs=152.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++++|+.+++...++.|.+||.. ++... +....               . ......+.+.+.         +.+
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~---------------~-~~~~~~i~~~~~---------g~l   75 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT---------------P-DAKVMCLIVSSL---------GDI   75 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS---------------T-TCCEEEEEECTT---------SCE
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC---------------C-CCcceeEEECCC---------CCE
Confidence            345899999977777678999999987 65443 22110               0 011223333321         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||.. ++............+.++++.++|+.+++...++.|..||.. ++.... +......+.++++
T Consensus        76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~  153 (300)
T 2qc5_A           76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITL  153 (300)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred             EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEE
Confidence            5554457889999988 655322223344679999999999877777668899999987 654422 2223457899999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|++.++..  +.|..||. +++... ....+...+..++++++|...++.. ..+.|.+|+. .++..    .....
T Consensus       154 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~----~~~~~  226 (300)
T 2qc5_A          154 GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEIS----EYDIP  226 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEE----EEECS
T ss_pred             CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEE----EEECC
Confidence            99999777764  78999998 554433 1223455688999999998766554 5678999998 33321    12222


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      ........++++     ++|...++...++.|..||.
T Consensus       227 ~~~~~~~~i~~d-----~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          227 TPNARPHAITAG-----KNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             STTCCEEEEEEC-----STTCEEEEETTTTEEEEECT
T ss_pred             CCCCCceEEEEC-----CCCCEEEeccCCCeEEEECC
Confidence            223344566666     78886666556789999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=8.6e-11  Score=111.47  Aligned_cols=194  Identities=8%  Similarity=-0.024  Sum_probs=130.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++++++|+++++.. ++.|.+||..++... .+....                 ......+++.+.         +.++
T Consensus        71 ~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~-----------------~~~p~~i~~~~~---------g~l~  122 (270)
T 1rwi_B           71 GLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDG-----------------LNYPEGLAVDTQ---------GAVY  122 (270)
T ss_dssp             CEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCS-----------------CSSEEEEEECTT---------CCEE
T ss_pred             eeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCC-----------------cCCCcceEECCC---------CCEE
Confidence            449999999666555 889999998765432 221100                 011223333321         5555


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEcc
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS  169 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p  169 (579)
                      ++...++.|.+|+..+....... ......+.+++++++|+.+++...++.|.+||...+........+...+.++++++
T Consensus       123 v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~  201 (270)
T 1rwi_B          123 VADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE  201 (270)
T ss_dssp             EEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECT
T ss_pred             EEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECC
Confidence            55566788999976655443222 23334678999999998777766788999999876654433333335789999999


Q ss_pred             CCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          170 DGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       170 ~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +|.++++..  +.|.+||............+...+.+++++++|+.+++.. .++.|.++++...+
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLEHH  266 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG-GGTEEEEECCCGGG
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC-CCCEEEEEcCCCcc
Confidence            998777775  7899999876544332223446789999999998666655 69999999987654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=7.2e-10  Score=108.85  Aligned_cols=276  Identities=14%  Similarity=0.016  Sum_probs=164.9

Q ss_pred             CcEEEEEEC-----CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008058           86 SSLLVLGTG-----GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~-----~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~  150 (579)
                      +..+++...     ++.|.++|..+++.+.++..+.. + . +.++|||++++.++          .++.|.+||..+++
T Consensus        44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            666777765     57899999999999888765443 3 4 99999999988876          36789999999999


Q ss_pred             eeeEeecCC-------CCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058          151 LLGKFRAST-------KGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       151 ~~~~~~~~~-------~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      .+.++....       .....++++|||++++++.    +.|.++|+.+++.+.++....  . ...+....+.+++.+ 
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~-  196 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHC-  196 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEE-
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEEC-
Confidence            988876432       2467799999999888764    689999999999998886322  1 223333445566665 


Q ss_pred             CCCeEEEEEcCC-CccccceeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce--eecccC----
Q 008058          220 GERYIALWRTDG-VKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE--ELRNTK----  291 (579)
Q Consensus       220 ~d~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~----  291 (579)
                      .||.+.+.++.. ++... .....+. ..........|.    .++|++++ .+.+|+++++|..+..  .+....    
T Consensus       197 ~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~----~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          197 RDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYS----QKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             TTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEE----TTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred             CCCCEEEEECCCCCeEEE-eecceeccccccccccceeE----cCCCcEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence            689888888876 43210 0000000 001111111221    15776554 6668999999987653  222111    


Q ss_pred             -----CceEEeeecccCcccccccchhhhhcccc---ceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008058          292 -----ATKILSSSEDVNSKSQKSATAAIFAAKLQ---DIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-  362 (579)
Q Consensus       292 -----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-  362 (579)
                           +-...-.....+.++++    .++.+..+   +.-+.....+++.+-. ......++.... .++.+++++||+ 
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~----~lyV~~~~~~~~~hk~~~~~V~viD~~-t~kv~~~i~vg~-~~~~lavs~D~~~  344 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALD----RIYLLVDQRDEWRHKTASRFVVVLDAK-TGERLAKFEMGH-EIDSINVSQDEKP  344 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTT----EEEEEEEECCTTCTTSCEEEEEEEETT-TCCEEEEEEEEE-EECEEEECSSSSC
T ss_pred             ccccccccCCCcceeeECCCCC----eEEEEeccccccccCCCCCEEEEEECC-CCeEEEEEECCC-CcceEEECCCCCe
Confidence                 00000000000122222    33332211   1111112355655533 334444443322 678999999997 


Q ss_pred             eeeccccceecccceeee
Q 008058          363 LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       363 ~l~~s~s~d~~~~~w~~~  380 (579)
                      .|.++...++++.+.|..
T Consensus       345 ~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCeEEEEECC
Confidence            552445557888888864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=3e-09  Score=104.01  Aligned_cols=183  Identities=14%  Similarity=0.022  Sum_probs=121.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~  161 (579)
                      +.++++...++.|..||..+++... +.  ....+.++.|+|+|+++++. .+ .|++||..+++........    ...
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~  135 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNR  135 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCC
Confidence            5566777778899999999887542 21  34579999999999876654 44 4999999888754332211    135


Q ss_pred             eeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC--C
Q 008058          162 ISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD--G  231 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~--~  231 (579)
                      +..++++|+|+++++..        +.|+.++  +++.. .+..+......++|+|+++.++.+...++.|.+|++.  +
T Consensus       136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~  212 (326)
T 2ghs_A          136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  212 (326)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccccc
Confidence            88999999999777653        3566666  45433 3333344578999999999876665567899999986  4


Q ss_pred             C-ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          232 V-KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      + ..........+.........+.++     ++|.+.++...++.|.+||.
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d-----~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT
T ss_pred             CCcccCceEEEECCCCCCCCCeeEEC-----CCCCEEEEEeCCCEEEEECC
Confidence            4 321111222222223344556666     78887766666788888876

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=2.3e-09  Score=103.32  Aligned_cols=219  Identities=11%  Similarity=0.070  Sum_probs=137.2

Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ..|+|++. .+++...++.|..||..++... .+.. ..                  ...++.+.+.         +. +
T Consensus        18 p~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~------------------~~~~i~~~~d---------G~-l   67 (297)
T 3g4e_A           18 PVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-DA------------------PVSSVALRQS---------GG-Y   67 (297)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-SS------------------CEEEEEEBTT---------SS-E
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-CC------------------ceEEEEECCC---------CC-E
Confidence            47899655 4555556889999999887653 2221 11                  2234444332         55 4


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCceeeEe
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYSAGA-----------DGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~~~~~~  155 (579)
                      +++. ++.|.+||..+++......  .+ ....+++++++|+|+++++...           .+.|+.+|.. ++... +
T Consensus        68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~  144 (297)
T 3g4e_A           68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-Y  144 (297)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-E
T ss_pred             EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-E
Confidence            5555 5679999999887542221  11 2245889999999996665432           2345555542 43332 3


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC---CeEEEEEC--CCCee-----eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          156 RASTKGISCMAVSSDGKMLATAA---GQLKTFNC--SDHKK-----MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~--~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      .......+.++|+|+++.++.+.   +.|.+||+  .++..     +..+..+......++++++|++.++.. .++.|.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~  223 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVI  223 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEE
Confidence            33334568999999999776554   78999987  45532     223334446678999999998776665 578899


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      .||..+++..     ..+..+...+.+++|.    .|+++.|++++.
T Consensus       224 ~~d~~tG~~~-----~~i~~p~~~~t~~~f~----g~d~~~L~vt~~  261 (297)
T 3g4e_A          224 RLDPVTGKRL-----QTVKLPVDKTTSCCFG----GKNYSEMYVTCA  261 (297)
T ss_dssp             EECTTTCCEE-----EEEECSSSBEEEEEEE----SGGGCEEEEEEB
T ss_pred             EEcCCCceEE-----EEEECCCCCceEEEEe----CCCCCEEEEEcC
Confidence            9999877633     3344444455666674    156666666554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=3.8e-09  Score=101.51  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=146.9

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++++++|+++++...++.|..||.. ++.. .+....               . ......++..+.         +.+
T Consensus        65 ~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~---------------~-~~~~~~i~~~~~---------g~l  117 (300)
T 2qc5_A           65 MCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ---------------P-DSGPYGITEGLN---------GDI  117 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS---------------T-TCCEEEEEECST---------TCE
T ss_pred             eeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC---------------C-CCCCccceECCC---------CCE
Confidence            455889999877776667889999987 6543 222110               0 011223333321         555


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-eecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~v~~l~~  167 (579)
                      .++...++.|..||.. ++............+.++++.++|+..++...++.|..||. +++.... ...+...+.++++
T Consensus       118 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~  195 (300)
T 2qc5_A          118 WFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITS  195 (300)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred             EEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEE
Confidence            5555557889999988 65542222334567899999999996666666788999998 5654432 2223447899999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME  244 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~  244 (579)
                      +++|++.++..  +.|.+||. +++.... +..+...+.+++++++|+..++.. .++.|..|+.. ++..    .+...
T Consensus       196 d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~~-g~~~----~~~~~  268 (300)
T 2qc5_A          196 GNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW-GANQIGRITND-NTIQ----EYQLQ  268 (300)
T ss_dssp             CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECTT-SCEE----EEECC
T ss_pred             CCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc-CCCeEEEECCC-CcEE----EEECC
Confidence            99998877765  68999998 4443332 334456789999999998666553 57899999983 3311    12222


Q ss_pred             cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          245 HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      ........+.++     ++|...++.. . .|..+|.
T Consensus       269 ~~~~~~~~i~~~-----~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          269 TENAEPHGITFG-----KDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             STTCCCCCEEEC-----TTSCEEEECS-S-EEEEEEE
T ss_pred             ccCCccceeEeC-----CCCCEEEEcc-C-ceEEeCC
Confidence            222334555565     7877555544 4 7777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.29  E-value=3.3e-11  Score=118.93  Aligned_cols=183  Identities=8%  Similarity=0.063  Sum_probs=126.1

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      +++.+  ++++...++++|+.++ ++||++...+...  ......     +.+.....+ .. ++.+.|   +       
T Consensus        39 ~~nlL--ais~~~gll~a~~~~~-l~v~~~~~l~~~~--~~~~~~-----~~~~~~~~l-p~-V~~l~f---d-------   96 (388)
T 1xip_A           39 SLQNL--DISNSKSLFVAASGSK-AVVGELQLLRDHI--TSDSTP-----LTFKWEKEI-PD-VIFVCF---H-------   96 (388)
T ss_dssp             CCBCE--EEETTTTEEEEEETTE-EEEEEHHHHHHHH--HSSSCC-----CCCSEEEEC-TT-EEEEEE---E-------
T ss_pred             cccEE--EEcCCCCEEEEeCCCE-EEEEEhhHhhhhh--cccccc-----ccceEEeeC-CC-eeEEEE---C-------
Confidence            45444  9999999999999884 6679865433000  000000     000000011 12 566666   2       


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                       +..|+++ .++.|++||+.+....... ..|..++.++.+.+.  .+++++.||.|.+||+.++....    +...|+|
T Consensus        97 -~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~  167 (388)
T 1xip_A           97 -GDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTS  167 (388)
T ss_dssp             -TTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred             -CCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence             7788888 8899999999865543232 356778888887764  38889999999999999887653    3458999


Q ss_pred             EEEccCCCEEEEECCeEEEEECCCCee--eEEe------e---cCCCCEEEEEEecCCCEEEEEe
Q 008058          165 MAVSSDGKMLATAAGQLKTFNCSDHKK--MQKF------S---GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~g~i~vwd~~~~~~--~~~~------~---~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ++|+|+|..+..++|.+++|+...++.  .+++      .   +|...|.+|.|.+++.++++-+
T Consensus       168 v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          168 FDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999999933333339999999888775  5566      2   3788899999999998887744

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.28  E-value=5.6e-10  Score=120.25  Aligned_cols=240  Identities=16%  Similarity=0.193  Sum_probs=158.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccc-cccc-cccccccccccccccCccceEEeeecccccccccCCcEEEEEE
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTE-TTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT   93 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~   93 (579)
                      ++..++.++.|+.|..+|..+|+.+..+... .... .....++             +..            +..+++++
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-------------~v~------------~g~v~vg~  174 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-------------RVV------------NGKVVIGN  174 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-------------EEE------------TTEEEECC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-------------EEE------------CCEEEEEe
Confidence            4567888889999999999999999887642 1000 0000000             000            33455554


Q ss_pred             C------CCeEEEEEccCCeEEEEecCCC-C-----------------------------CCEEEEEEccCCCEEEEEeC
Q 008058           94 G------GGDVLALAVSAGQLKWRLSDCH-P-----------------------------GGVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        94 ~------~g~i~iwd~~~~~~~~~~~~~h-~-----------------------------~~V~~l~~~~~~~~l~s~~~  137 (579)
                      .      +|.|..||..+|+.++++.... .                             .....++++|++..++.++.
T Consensus       175 ~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~  254 (689)
T 1yiq_A          175 GGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVG  254 (689)
T ss_dssp             BCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             CCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCC
Confidence            3      6889999999999988764211 0                             01125788898899999887


Q ss_pred             CCc-------------------EEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEE
Q 008058          138 DGM-------------------VCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTF  184 (579)
Q Consensus       138 dg~-------------------v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--g~i~vw  184 (579)
                      ++.                   |..||..+|+.+..++..  .       .++.......+|+   .++.++  |.++++
T Consensus       255 ~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~l  334 (689)
T 1yiq_A          255 NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVI  334 (689)
T ss_dssp             CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEE
Confidence            764                   999999999998887642  1       1222223333565   677776  899999


Q ss_pred             ECCCCeeeEEeecCC-C--------------------------------------CEEEEEEecCCCEEEEEecC-----
Q 008058          185 NCSDHKKMQKFSGHP-G--------------------------------------AVRFMTFSDNGKYVLSSAVG-----  220 (579)
Q Consensus       185 d~~~~~~~~~~~~h~-~--------------------------------------~v~~l~~~~~~~~l~s~s~~-----  220 (579)
                      |.++|+.+....-.. .                                      ....++|+|+...+++....     
T Consensus       335 D~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~  414 (689)
T 1yiq_A          335 DRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYY  414 (689)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred             ECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceee
Confidence            999999874432110 0                                      01136888888777765311     


Q ss_pred             ---------------------------------------CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCccc
Q 008058          221 ---------------------------------------ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVD  261 (579)
Q Consensus       221 ---------------------------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                                                             ++.|..||+.+++..     .....+....... +.     
T Consensus       415 ~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----  483 (689)
T 1yiq_A          415 EHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-----WEVPYVTIFNGGT-LS-----  483 (689)
T ss_dssp             ECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----
T ss_pred             eeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeE-----eEccCCCCccCcc-ce-----
Confidence                                                   377999999998743     3333333222222 22     


Q ss_pred             CCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          262 DAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       262 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..+..+++++.||.++.||.++|+.+...+
T Consensus       484 tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          484 TAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            467789999999999999999999987654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.28  E-value=9.2e-10  Score=110.13  Aligned_cols=237  Identities=13%  Similarity=0.120  Sum_probs=157.9

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccc-------cccccccccccccccccccCccceEEe
Q 008058           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADI-------ASTETTSLYGNRLEREHLSVDYTCMKW   73 (579)
Q Consensus        11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~w   73 (579)
                      +++||||++++.+.          .++.|.++|..+++.+.++...       ......+.++++               
T Consensus       123 ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD---------------  187 (426)
T 3c75_H          123 PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD---------------  187 (426)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT---------------
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC---------------
Confidence            49999999888775          3678999999999998887532       112334445544               


Q ss_pred             eecccccccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 008058           74 LSVDRKKKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGS  150 (579)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~  150 (579)
                                  +++++++..  ++.|.+.|+.+++.+.++..+.   .  ....|++ +.+++.+.||.+.+.+..+++
T Consensus       188 ------------Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g---~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~  250 (426)
T 3c75_H          188 ------------NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD---C--YHIFPASPTVFYMNCRDGSLARVDFADGE  250 (426)
T ss_dssp             ------------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS---E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred             ------------CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC---c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence                        778888874  5789999999999987774322   1  2334443 556777788888888886665


Q ss_pred             eeeE----eecCCCCe-eEEEEccCCCEEEEEC--CeEEEEECCCCee--eEEeec----------CCCCEEEEEEecCC
Q 008058          151 LLGK----FRASTKGI-SCMAVSSDGKMLATAA--GQLKTFNCSDHKK--MQKFSG----------HPGAVRFMTFSDNG  211 (579)
Q Consensus       151 ~~~~----~~~~~~~v-~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~--~~~~~~----------h~~~v~~l~~~~~~  211 (579)
                      ....    +.....++ ..+.+.+++..++...  +.+.+.|......  +..+.-          .......++++|++
T Consensus       251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg  330 (426)
T 3c75_H          251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS  330 (426)
T ss_dssp             CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG
T ss_pred             EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC
Confidence            4422    22112221 2456788888766655  8999999875532  111110          01112236899998


Q ss_pred             CEEEEEec---------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc-EEEEEE-cCCeEEEEE
Q 008058          212 KYVLSSAV---------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL-YVLAIS-ETGVCYIWY  280 (579)
Q Consensus       212 ~~l~s~s~---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~-~dg~i~iwd  280 (579)
                      +.++++..         .++.|.++|..+.+..     ..+.-.. ....+.|+     |||+ ++++.. .++.|.++|
T Consensus       331 ~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv-----~~I~vg~-~P~gia~s-----pDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          331 DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI-----NKIELGH-EIDSINVS-----QDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEEE-EECEEEEC-----CSSSCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEecccccccccCCCCEEEEEECCCCeEE-----EEEECCC-CcCeEEEc-----cCCCEEEEEEcCCCCeEEEEE
Confidence            87777642         1357999999998754     2222222 23455666     9999 888888 499999999


Q ss_pred             CCCceeeccc
Q 008058          281 GQNIEELRNT  290 (579)
Q Consensus       281 ~~~~~~~~~~  290 (579)
                      ..+++.++.+
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999988664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.25  E-value=1.3e-08  Score=99.51  Aligned_cols=218  Identities=14%  Similarity=0.099  Sum_probs=135.5

Q ss_pred             EEEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+|+|++. ++++...++.|..||..+++... +..                   .....++.|.+.         +.+
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-------------------~~~v~~i~~~~d---------g~l  103 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-------------------PFMGSALAKISD---------SKQ  103 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-------------------SSCEEEEEEEET---------TEE
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-------------------CCcceEEEEeCC---------CeE
Confidence            458999865 44555567899999998776432 221                   112345666543         444


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecC--CC-CCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSD--CH-PGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~--~h-~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                       ++++.+ .|.+||..+++.......  +. ...+.+++++|+|+++++...      .+.|+.+|  +++.. .+....
T Consensus       104 -~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 -LIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             -EEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             -EEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence             445544 499999988876422211  11 236899999999987665432      24566666  45443 333233


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECC--CC-e-----eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DH-K-----KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~-~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      .....++|+|+|+.++.+.   +.|.+||+.  ++ +     .+..+......+..++++++|.+.++.. .++.|.+|+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d  257 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYD  257 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEEC
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEEC
Confidence            4578999999998776554   799999986  55 3     2223333445678899999998776654 578899999


Q ss_pred             cCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          229 TDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      .. ++..     ..+..+...+.+++|.    .+++..|++++.
T Consensus       258 ~~-g~~~-----~~i~~~~~~~~~~af~----g~d~~~L~vt~~  291 (326)
T 2ghs_A          258 TD-GNHI-----ARYEVPGKQTTCPAFI----GPDASRLLVTSA  291 (326)
T ss_dssp             TT-CCEE-----EEEECSCSBEEEEEEE----STTSCEEEEEEB
T ss_pred             CC-CCEE-----EEEECCCCCcEEEEEe----cCCCCEEEEEec
Confidence            83 3322     2333344445666664    156666655544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=8.6e-10  Score=118.58  Aligned_cols=241  Identities=17%  Similarity=0.223  Sum_probs=161.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      ++..++.++.|+.|..+|..+|+.+..+... .........+.+            +.            .+..+++++.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p------------~v------------~~~~v~v~~~  182 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP------------RV------------FKGKVIIGNG  182 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC------------EE------------ETTEEEECCB
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc------------EE------------ECCEEEEEec
Confidence            4567888889999999999999999888643 110000000000            00            0345666654


Q ss_pred             ------CCeEEEEEccCCeEEEEecCCCCC-------------------------------CEEEEEEccCCCEEEEEeC
Q 008058           95 ------GGDVLALAVSAGQLKWRLSDCHPG-------------------------------GVSAISFATHGSCIYSAGA  137 (579)
Q Consensus        95 ------~g~i~iwd~~~~~~~~~~~~~h~~-------------------------------~V~~l~~~~~~~~l~s~~~  137 (579)
                            +|.|+.||..+|+.++++......                               ....++++|++..++.+..
T Consensus       183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~  262 (677)
T 1kb0_A          183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG  262 (677)
T ss_dssp             CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred             ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence                  688999999999998877432111                               1135788899999988876


Q ss_pred             CC-------------------cEEEEeCCCCceeeEeecCC---------CCeeEEEEccCC---CEEEEEC--CeEEEE
Q 008058          138 DG-------------------MVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDG---KMLATAA--GQLKTF  184 (579)
Q Consensus       138 dg-------------------~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g---~~l~~~~--g~i~vw  184 (579)
                      ++                   .|..+|..+|+.+..++...         .....+....+|   +.++.++  |.++++
T Consensus       263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~l  342 (677)
T 1kb0_A          263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVL  342 (677)
T ss_dssp             CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred             CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEE
Confidence            64                   59999999999988876421         122333444477   5777777  899999


Q ss_pred             ECCCCeeeEEeecCCC-----------CE------------------------EEEEEecCCCEEEEEec----------
Q 008058          185 NCSDHKKMQKFSGHPG-----------AV------------------------RFMTFSDNGKYVLSSAV----------  219 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~-----------~v------------------------~~l~~~~~~~~l~s~s~----------  219 (579)
                      |.++|+.+..+.....           ++                        ..++|+|++..+++...          
T Consensus       343 D~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  422 (677)
T 1kb0_A          343 DRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDK  422 (677)
T ss_dssp             ETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECT
T ss_pred             ECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccc
Confidence            9999998876642210           01                        15688998888777542          


Q ss_pred             --------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEE
Q 008058          220 --------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       220 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                                                      ..+.|..||+.+++..     ....+........ +.     .++..+
T Consensus       423 ~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~g~-~~-----~~g~~v  491 (677)
T 1kb0_A          423 KWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA-----WSVEHVSPWNGGT-LT-----TAGNVV  491 (677)
T ss_dssp             TCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE-----EEEEESSSCCCCE-EE-----ETTTEE
T ss_pred             ccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE-----eecCCCCCCcCcc-eE-----eCCCEE
Confidence                                            0278999999988743     3333332222222 22     466788


Q ss_pred             EEEEcCCeEEEEECCCceeecccC
Q 008058          268 LAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       268 ~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++++.||.+++||..+++.+..+.
T Consensus       492 ~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          492 FQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEECCCCcEEEEECCCCceeeeee
Confidence            889999999999999999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.21  E-value=8e-12  Score=124.50  Aligned_cols=223  Identities=9%  Similarity=0.025  Sum_probs=118.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..+++++.||.|+.||..+|+.+..++.  ..+....+..                           ++..+++++.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~---------------------------~g~~~v~~s~d   58 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV---------------------------EEPAFLPDPND   58 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC--------------------------------CCEEECTTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc---------------------------CCCEEEEeCCC
Confidence            678999999999999999999999988764  2111111111                           14456777899


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEE-EEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVS-AISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      |.|+.||..+|+.++.........+. +..+. ++..+++++.|+.|+.||..+|+.+..+..+.    ...++|++..+
T Consensus        59 g~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v  133 (369)
T 2hz6_A           59 GSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLL  133 (369)
T ss_dssp             CCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------E
T ss_pred             CEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEE
Confidence            99999999999876655321111110 00111 34567888889999999999999888776543    23456677778


Q ss_pred             EEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058          175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       175 ~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      ++++  +.|+.||.++++.+.++..+.  .....+.++.   ..+++++ .|+.+..||..+++..     +........
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~-~dg~v~a~d~~tG~~~-----W~~~~~~pv  205 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSN-GDGLVVTVDSESGDVL-----WIQNYASPV  205 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEE-TSCEEEEECTTTCCEE-----EEEECSSCE
T ss_pred             EEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEEC-CCCEEEEEECCCCcEE-----EEecCCCce
Confidence            7776  899999999998776654221  1223333331   3455565 6999999999988743     343333334


Q ss_pred             eEeEEecCCcccCCCcEEEE--EEcCCeEEEEECCCce
Q 008058          250 MDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNIE  285 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~  285 (579)
                      +....++     ++|...+.  ...++.++.+|..+|+
T Consensus       206 ~~~~~~~-----~dg~~~v~~~~~~~~~l~~ld~~tG~  238 (369)
T 2hz6_A          206 VAFYVWQ-----REGLRKVMHINVAVETLRYLTFMSGE  238 (369)
T ss_dssp             EEEEECT-----TSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEec-----CCceEeccceeecccceeeeehhcCC
Confidence            4444443     45543210  0113456666666665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.19  E-value=4.8e-09  Score=103.60  Aligned_cols=232  Identities=11%  Similarity=-0.006  Sum_probs=145.3

Q ss_pred             EEc--cCCCEEEEEe-CCCcEEEEECCCC----eEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           12 SFS--PALDYFAICS-GDARIKIWDTLKG----QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        12 ~fs--~dg~~las~s-~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++  +++++|+..+ .+++|.|+|+.+.    +....+....- ....-++         ... .+...+         
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~-~~~~g~s---------~Ph-~~~~~p---------  147 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV-KKVSGYS---------RLH-TVHCGP---------  147 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH-HHHHCEE---------EEE-EEEECS---------
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc-ccccCCC---------ccc-ceeECC---------
Confidence            457  8888777654 5889999999765    55555520000 0000000         000 000011         


Q ss_pred             CCcEEEEEECC------CeEEEEEccCCeEEEEecCC-CC-CCEEEEEEccCCCEEEEEe-------------------C
Q 008058           85 GSSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HP-GGVSAISFATHGSCIYSAG-------------------A  137 (579)
Q Consensus        85 ~~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~s~~-------------------~  137 (579)
                      ++ +++++..+      |.|.++|..+++.+.+...+ .. .--.++.|+|+++.+++..                   .
T Consensus       148 dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~  226 (462)
T 2ece_A          148 DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRY  226 (462)
T ss_dssp             SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHS
T ss_pred             Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhcc
Confidence            14 45555554      67999999999998877533 22 2245688999999888874                   3


Q ss_pred             CCcEEEEeCCCCceeeEeecCC--CCeeEEEE--ccCCCEEEEEC--------CeEEEEECCCCee--eEEe--ecC---
Q 008058          138 DGMVCEIDPLTGSLLGKFRAST--KGISCMAV--SSDGKMLATAA--------GQLKTFNCSDHKK--MQKF--SGH---  198 (579)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~--~~v~~l~~--~p~g~~l~~~~--------g~i~vwd~~~~~~--~~~~--~~h---  198 (579)
                      +.+|.+||+.+++.+.++....  .....+.|  +|+|+++++++        ++|.+|....++.  ...+  ...   
T Consensus       227 ~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          227 GNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             CCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence            6899999999998888877531  24556666  99999777643        5787766554432  1111  110   


Q ss_pred             -------------CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc----------e----eeE
Q 008058          199 -------------PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA----------V----FMD  251 (579)
Q Consensus       199 -------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----------~----~~~  251 (579)
                                   ......|.++|||++|.++....+.|.+||+......  +.+......+          .    .-.
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~--~lv~~I~tGG~~~~~~~~~G~~~~ggPr  384 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKP--VLTGKVKLGGIFHRADHPAGHKLTGAPQ  384 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSC--EEEEEEECBTTTTCBCCTTSCCCCSCCC
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEEEEeCCeeccccccccccCCCCCC
Confidence                         2346789999999999998877899999998643222  1222222110          0    135


Q ss_pred             eEEecCCcccCCCcEEEEEE
Q 008058          252 CRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~s~~  271 (579)
                      .+.++     |||++|+++.
T Consensus       385 ~~~lS-----pDGk~LyVaN  399 (462)
T 2ece_A          385 MLEIS-----RDGRRVYVTN  399 (462)
T ss_dssp             CEEEC-----TTSSEEEEEC
T ss_pred             EEEEc-----CCCCEEEEEc
Confidence            56666     9999999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=1.5e-08  Score=102.07  Aligned_cols=186  Identities=12%  Similarity=0.078  Sum_probs=123.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEe----ecCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKF----RAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~----~~~~  159 (579)
                      +.++++...++.|+.||+.++....... .. .... ++|+|+++.++++..++  .|..||...+.....+    ....
T Consensus       142 g~lyv~d~~~~~I~~id~~~g~~~~~~~-~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~  218 (409)
T 3hrp_A          142 NTVLAYQRDDPRVRLISVDDNKVTTVHP-GF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS  218 (409)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEEE-TC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred             CCEEEEecCCCcEEEEECCCCEEEEeec-cC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence            5555555566889999999887754332 22 2233 99999999999988766  7999998766544443    2144


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE----eecCCCCE--EEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK----FSGHPGAV--RFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~----~~~h~~~v--~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ..+.+++++|++..|+.+.  +.|+.||..++.....    ..++...-  ..++|+|++..|+.+...++.|+.|+...
T Consensus       219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g  298 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG  298 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred             CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence            5778999999444444455  7899999987753222    22222222  39999996555555555788999998765


Q ss_pred             CccccceeEEeeecC--------------ceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCce
Q 008058          232 VKKQSASCVLAMEHP--------------AVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIE  285 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~  285 (579)
                      ...    . . ....              -.....++++     ++|.++++-+ .+++|+.|+..++.
T Consensus       299 ~~~----~-~-~g~~~~~g~~dg~~~~~~~~~P~gia~d-----~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          299 ECE----W-F-CGSATQKTVQDGLREEALFAQPNGMTVD-----EDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             CEE----E-E-EECTTCCSCBCEEGGGCBCSSEEEEEEC-----TTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             CEE----E-E-EeCCCCCCcCCCcccccEeCCCeEEEEe-----CCCCEEEEeCCCCCEEEEEECCCCE
Confidence            311    1 1 1111              1224556676     8999777777 78899999977665

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=6.9e-09  Score=111.75  Aligned_cols=199  Identities=12%  Similarity=0.151  Sum_probs=127.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+..+..............+    ....  ....+            +..+++++.++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~~------------~g~v~v~~~dg  131 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCD----AVNR--GVAVW------------KGKVYVGVLDG  131 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCCC--CCEEE------------TTEEEEECTTS
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcccccccccc----CCCC--ccEEE------------CCEEEEEccCC
Confidence            456777888899999999999999988643221110000000    0000  00011            56789999999


Q ss_pred             eEEEEEccCCeEEEEecCC-CCCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC-------
Q 008058           97 DVLALAVSAGQLKWRLSDC-HPGGVSAISFAT---HGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST-------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~---~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~-------  159 (579)
                      .|..+|..+|+.+++.... +......+..+|   ++ .++.++      .+|.|+.||..+|+.+..+....       
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          132 RLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             EEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            9999999999998877543 211111111122   44 444443      37899999999999887765211       


Q ss_pred             ------------------------CCeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEE
Q 008058          160 ------------------------KGISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQK  194 (579)
Q Consensus       160 ------------------------~~v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~~  194 (579)
                                              .....++++|++.+++.+.  +                   .|..||.++|+.+..
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~  290 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH  290 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred             ccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence                                    0112578899888888876  3                   399999999999887


Q ss_pred             eec--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          195 FSG--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       195 ~~~--h~-------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ++.  |.       .++.......+|+   .++.++ .+|.++++|..+++..
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGELL  342 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCEe
Confidence            764  22       2222223334564   566655 7999999999998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.17  E-value=4.7e-09  Score=105.01  Aligned_cols=274  Identities=13%  Similarity=0.001  Sum_probs=166.2

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCc
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~  150 (579)
                      +..++++...     +.|.++|+.+++.+.++..+. .+  .+.++|||++++.+.          .++.|.++|..+++
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            5556666653     689999999999998886554 34  899999999988886          36789999999999


Q ss_pred             eeeEeecC-------CCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC-CEEEEEe
Q 008058          151 LLGKFRAS-------TKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG-KYVLSSA  218 (579)
Q Consensus       151 ~~~~~~~~-------~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~s  218 (579)
                      .+.++...       ......+.++|||++++++.    +.|.+.|+.+++.+.++.-..  .  ....|++ +.+++.+
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNC  236 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEc
Confidence            98887632       23456789999999998864    689999999999988886422  1  2334443 4445554


Q ss_pred             cCCCeEEEEEcCCCccccce-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee--cccC----
Q 008058          219 VGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL--RNTK----  291 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~----  291 (579)
                       .||.+.+.+...++..... ..+..... .......+.     +++..++..+..|.+.+.|.......  ....    
T Consensus       237 -~dG~~~~V~~~~~~v~~~~~~~~~v~~~-p~~~~~~~~-----~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~  309 (426)
T 3c75_H          237 -RDGSLARVDFADGETKVTNTEVFHTEDE-LLINHPAFS-----LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTE  309 (426)
T ss_dssp             -TTSSEEEEECCTTCCEEEECCCCSCTTS-CBCSCCEEC-----TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCT
T ss_pred             -CCCCEEEEECCCCcEEEEeeeeeccCCC-ceeeEeeec-----CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccc
Confidence             6888888887444322000 00111111 111122344     78888888888899999998654321  1000    


Q ss_pred             -C--c-eEEee-ecccCcccccccchhhhhccccc---eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-
Q 008058          292 -A--T-KILSS-SEDVNSKSQKSATAAIFAAKLQD---IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-  362 (579)
Q Consensus       292 -~--~-~~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-  362 (579)
                       .  . ..... ....++++++    .++.+..++   .-+...+.+.+.+- .......++.... ....++|+|||+ 
T Consensus       310 ~~i~~g~~p~g~~~va~s~dg~----rlyVa~~~~~~gthk~~s~~VsVID~-~T~kvv~~I~vg~-~P~gia~spDg~~  383 (426)
T 3c75_H          310 AERADDWRPGGWQQTAYHRQSD----RIYLLVDQRDEWKHKAASRFVVVLNA-ETGERINKIELGH-EIDSINVSQDAEP  383 (426)
T ss_dssp             TTGGGTEEECSSSCEEEEGGGT----EEEEEEEECCTTCTTSCEEEEEEEET-TTCCEEEEEEEEE-EECEEEECCSSSC
T ss_pred             cccccccccCCceeeEEcCCCC----EEEEEecccccccccCCCCEEEEEEC-CCCeEEEEEECCC-CcCeEEEccCCCE
Confidence             0  0 00000 0001233333    333332211   00001234555553 2334444444332 478899999999 


Q ss_pred             eeecccc-ceecccceeee
Q 008058          363 LLPMSQS-LLKSKRGRYVQ  380 (579)
Q Consensus       363 ~l~~s~s-~d~~~~~w~~~  380 (579)
                      ++ ++.. .++++.+.|..
T Consensus       384 ~l-yv~n~~s~~VsVID~~  401 (426)
T 3c75_H          384 LL-YALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EE-EEEETTTTEEEEEETT
T ss_pred             EE-EEEcCCCCeEEEEECC
Confidence            77 4444 58888888874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=8.4e-10  Score=108.79  Aligned_cols=239  Identities=8%  Similarity=0.070  Sum_probs=141.3

Q ss_pred             EEEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++++|+|+.+++...  ++.++||.+.+++. ..+.....         . ..++.. ....+.+.+.         +.
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~---------~-~~~~~~-~p~gv~~d~~---------g~   79 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSG---------N-AIITFD-TVLGIKSDGN---------GI   79 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCS---------S-CCCCCS-CEEEEEECSS---------SE
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCccc---------C-ccccee-EeeEEEEcCC---------Cc
Confidence            4589999999888642  34355665545543 22321110         0 001111 2233444332         44


Q ss_pred             EEEEEEC-----CCeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEEEE-e---CCCcEEEEeCCCCceee
Q 008058           88 LLVLGTG-----GGDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSA-G---ADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        88 ~l~~~~~-----~g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~-~---~dg~v~iwd~~~~~~~~  153 (579)
                      ++++-+.     ++.|.+||+.+++.+..+..     .+...+.++++++++..++.+ .   .++.|.+||+.+++..+
T Consensus        80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A           80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            4444333     47899999999986655421     123457899999865555444 4   57899999998887666


Q ss_pred             EeecCC-----------------------------CCeeEEEEccCCCEEEEEC---CeEEEEECC---CC-----eeeE
Q 008058          154 KFRAST-----------------------------KGISCMAVSSDGKMLATAA---GQLKTFNCS---DH-----KKMQ  193 (579)
Q Consensus       154 ~~~~~~-----------------------------~~v~~l~~~p~g~~l~~~~---g~i~vwd~~---~~-----~~~~  193 (579)
                      .+..|.                             ..+..|+|+|+|+.|+.+.   +.++.++..   .+     +...
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  239 (343)
T 2qe8_A          160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS  239 (343)
T ss_dssp             ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred             EecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence            553321                             2368899999999888776   466665532   11     0000


Q ss_pred             --EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058          194 --KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       194 --~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  271 (579)
                        ...++.+....++++++|..+++.. .++.|.+||..+++..   .+.... .......+++.     ++|.++++.+
T Consensus       240 ~~~~~g~~g~pdgia~d~~G~l~va~~-~~~~V~~~d~~~G~~~---~~~~~~-~~~~p~~va~~-----~~g~l~v~~~  309 (343)
T 2qe8_A          240 KIERYSEKPICDGISIDKDHNIYVGDL-AHSAIGVITSADRAYK---LLVTDE-KLSWTDSFNFG-----SDGYLYFDCN  309 (343)
T ss_dssp             TCEEEEECCSCSCEEECTTCCEEEEEG-GGTEEEEEETTTTEEE---EEEECG-GGSCEEEEEEC-----TTSCEEEEEC
T ss_pred             ceEecccCCCCceEEECCCCCEEEEcc-CCCeEEEEECCCCCEE---EEEECC-ceecCCeeEEC-----CCCcEEEEeC
Confidence              1223445567899999998777765 6899999998444321   122211 13345667776     7777777766


Q ss_pred             cCCeEEEE
Q 008058          272 ETGVCYIW  279 (579)
Q Consensus       272 ~dg~i~iw  279 (579)
                      ..+.+.+|
T Consensus       310 ~~~~~~~f  317 (343)
T 2qe8_A          310 QLHHSAPL  317 (343)
T ss_dssp             CGGGSGGG
T ss_pred             cccccccc
Confidence            55444444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=3.5e-08  Score=98.44  Aligned_cols=234  Identities=9%  Similarity=0.019  Sum_probs=144.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..++.++.++.|..+|..+|+.+..+........    ..     .....   +...+..       .+..+++++.+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~----~~-----~~~~~---~~~~~~~-------~~~~v~v~~~~  112 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW----FS-----KEPAL---LSGGVTV-------SGGHVYIGSEK  112 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C----CS-----CCCCC---EEEEEEE-------ETTEEEEEETT
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc----cc-----ccCcc---cccCceE-------eCCEEEEEcCC
Confidence            456788888899999999999998877653221100    00     00000   0000000       15678899999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe-----eEEEEccC
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI-----SCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v-----~~l~~~p~  170 (579)
                      +.|..+|..+|+..++.... .........  .+..++.++.++.|+.+|..+|+.+..+.......     ...... +
T Consensus       113 g~l~a~d~~tG~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~  188 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVA-GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-F  188 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECS-SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-T
T ss_pred             CEEEEEECCCCCEEEEEeCC-CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-C
Confidence            99999999999988776432 111111122  24578888899999999999999887766432211     222222 3


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEeecCCCC----------E-EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          171 GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA----------V-RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      + .++.+.  +.+..+|..+++.+.........          + .....  .+..++.++ .++.+..+|..+++..  
T Consensus       189 ~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~l~~~d~~tG~~~--  262 (376)
T 3q7m_A          189 G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGNLTALDLRSGQIM--  262 (376)
T ss_dssp             T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSCEEEEETTTCCEE--
T ss_pred             C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcEEEEEECCCCcEE--
Confidence            4 455554  89999999999887766532110          1 11111  134566665 6899999999988643  


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                         .......  .....       .++..|++++.+|.+..+|..+++.+...
T Consensus       263 ---w~~~~~~--~~~~~-------~~~~~l~~~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          263 ---WKRELGS--VNDFI-------VDGNRIYLVDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             ---EEECCCC--EEEEE-------EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred             ---eeccCCC--CCCce-------EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence               2222221  11222       24567888889999999999999876543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.11  E-value=2.5e-09  Score=105.53  Aligned_cols=164  Identities=12%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCe---------EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQ---------LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                      ..++++|+.+ .+.+|++...+         ........+.. |+.++|  |+++|+++ .++.|++||+.+........
T Consensus        49 ~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~  123 (388)
T 1xip_A           49 KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT  123 (388)
T ss_dssp             TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE
T ss_pred             CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc
Confidence            5677777776 55569976433         11101123556 999999  89999998 88999999998877666677


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          157 ASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .+...+.++.+.+.. +++... |.|.+||+.+++...    +...|++++|+|+|  ++.+. .||++++|+.......
T Consensus       124 ~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~-~dg~i~~~~~~~~~~~  195 (388)
T 1xip_A          124 SFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL-KDRSFQSFAWRNGEME  195 (388)
T ss_dssp             ECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE-TTSCEEEEEEETTEEE
T ss_pred             eeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE-cCCcEEEEcCCCcccc
Confidence            777888888877653 333334 999999999887643    44689999999999  45565 6999999988776521


Q ss_pred             cceeEEee------e---cCceeeEeEEecCCcccCCCcEEEEE
Q 008058          236 SASCVLAM------E---HPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       236 ~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      .   ...+      .   .+...+..+.|.     +++.++++=
T Consensus       196 ~---k~~I~~Pp~~~~~~~~~~~V~sI~wl-----~~~~flv~y  231 (388)
T 1xip_A          196 K---QFEFSLPSELEELPVEEYSPLSVTIL-----SPQDFLAVF  231 (388)
T ss_dssp             E---EEEECCCHHHHTSCTTTSEEEEEEES-----SSSEEEEEE
T ss_pred             c---cceecCCcccccccCCCeeEEEEEEe-----cCCeEEEEE
Confidence            0   1122      1   133555566665     677877753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=6.6e-09  Score=100.50  Aligned_cols=218  Identities=15%  Similarity=0.120  Sum_probs=133.0

Q ss_pred             EEEccCCC-EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALD-YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~-~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+|+|+|+ ++++...++.|..|+. ++.. ..+..+...+                  ..+.|.+.         ++++
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~------------------~gl~~d~d---------G~l~  100 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFT------------------NGNAVDAQ---------QRLV  100 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCE------------------EEEEECTT---------SCEE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCcc------------------ceeeECCC---------CCEE
Confidence            48999998 4555566889999998 4543 3333222212                  23333321         5544


Q ss_pred             EEEECCCeEEEEEccCCeEEEEec--CC-CCCCEEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCC
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLS--DC-HPGGVSAISFATHGSCIYS----AGA-------------DGMVCEIDPLTG  149 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~--~~-h~~~V~~l~~~~~~~~l~s----~~~-------------dg~v~iwd~~~~  149 (579)
                      +....++.|.+|+.. ++......  .+ ....+.++++.|+|+..++    |..             .+.|+.||..++
T Consensus       101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g  179 (305)
T 3dr2_A          101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS  179 (305)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC
T ss_pred             EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC
Confidence            444455789999986 55321111  11 1234678999999997775    321             256888888777


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCee--eEEe-ecCCCCEEEEEEecCCCEEEEEe
Q 008058          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKK--MQKF-SGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~--~~~~-~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      +.....  .......++|+|||+.|+.+.        +.|++|++..+..  ...+ ....+....++++++|++.++ +
T Consensus       180 ~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~  256 (305)
T 3dr2_A          180 PLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S  256 (305)
T ss_dssp             CCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred             cEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence            654433  334678899999999777654        3799999876541  1112 112344567899999985443 3


Q ss_pred             cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                       .+ .|.+|+... +..     ..+..+. ....++|.     ++++.|..++.++.
T Consensus       257 -~~-gv~~~~~~g-~~~-----~~~~~~~-~~~~~~f~-----~d~~~L~it~~~~l  299 (305)
T 3dr2_A          257 -GT-GVCVFDSDG-QLL-----GHIPTPG-TASNCTFD-----QAQQRLFITGGPCL  299 (305)
T ss_dssp             -SS-EEEEECTTS-CEE-----EEEECSS-CCCEEEEC-----TTSCEEEEEETTEE
T ss_pred             -CC-cEEEECCCC-CEE-----EEEECCC-ceeEEEEe-----CCCCEEEEEcCCeE
Confidence             34 499999843 322     2233333 35566776     78888888877543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.10  E-value=1.7e-08  Score=103.37  Aligned_cols=240  Identities=9%  Similarity=0.019  Sum_probs=156.3

Q ss_pred             cCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccc-cccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           15 PALDYFAICSG-DARIKIWDTLKGQVQTEFADIAS-TETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        15 ~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      +||+++..... +++|.+.|+.+.++...++-..+ ....+.+                  ... |      ++.+++++
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~------------------~~~-p------~~~~v~~~  153 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRP------------------QKW-P------RSNYVFCN  153 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEE------------------CCS-S------BCSEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceee------------------eec-C------CCcEEEEe
Confidence            48888887765 56799999999998885542211 1111111                  110 1      15556655


Q ss_pred             E------------------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---------------
Q 008058           93 T------------------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---------------  139 (579)
Q Consensus        93 ~------------------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---------------  139 (579)
                      +                  .++.+.++|..+.+..+++.-+-  ....++++|+|+++++++.+.               
T Consensus       154 ~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d  231 (595)
T 1fwx_A          154 GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMD  231 (595)
T ss_dssp             ECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEE
T ss_pred             cccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccc
Confidence            3                  23469999999999988876432  346778999999988887553               


Q ss_pred             -----------------------cEEEEeCCC--Cce-eeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe
Q 008058          140 -----------------------MVCEIDPLT--GSL-LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK  190 (579)
Q Consensus       140 -----------------------~v~iwd~~~--~~~-~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~  190 (579)
                                             .|.+.|..+  ++. +..+.. .....++.++|||+++++++   ++|.++|+.+.+
T Consensus       232 ~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~  310 (595)
T 1fwx_A          232 HIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD  310 (595)
T ss_dssp             EEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred             eEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence                                   477888877  544 455543 23567899999999999988   799999998653


Q ss_pred             ------------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc------cccceeEEeeecCceeeEe
Q 008058          191 ------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK------KQSASCVLAMEHPAVFMDC  252 (579)
Q Consensus       191 ------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~  252 (579)
                                  .+.+.. -......++|+|+| ++.++..-|++|.+||+....      .. ...+..+.-+-..-..
T Consensus       311 ~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~-~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          311 AVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             HHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEECSSCEEEE
T ss_pred             cccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccccc-ceeEEEeecccccccc
Confidence                        233333 23457889999999 777776789999999987621      10 1133344333222111


Q ss_pred             EEecCCcccCCCcEEEEEEc-C-CeE-----------EEEECCCce
Q 008058          253 RCIDNGGVDDAGLYVLAISE-T-GVC-----------YIWYGQNIE  285 (579)
Q Consensus       253 ~~~~~~~~~~~~~~l~s~~~-d-g~i-----------~iwd~~~~~  285 (579)
                      .+.....++|||++|++... . .++           .++|+..++
T Consensus       388 ~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          388 KTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             eeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            21112234599999999875 1 233           889986543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.10  E-value=1.6e-08  Score=93.95  Aligned_cols=191  Identities=12%  Similarity=0.057  Sum_probs=133.5

Q ss_pred             EEEccCCCEEEEEeC--CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           11 TSFSPALDYFAICSG--DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fs~dg~~las~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++|+|||..+++.+.  ++.|+++|..+++.+..+......     |         .   ..+.+.          ++.+
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~-----f---------g---eGi~~~----------g~~l   78 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY-----F---------G---EGLTLL----------NEKL   78 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC-----C---------E---EEEEEE----------TTEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc-----c---------e---EEEEEe----------CCEE
Confidence            389998754444443  579999999999998876521100     0         0   011111          0334


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS  163 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~  163 (579)
                      .++.-.++.+.++|..+.+.+.++..+ ...  ...+++||+.++.+..++.|.++|..+.+.+..+....     ..++
T Consensus        79 yv~t~~~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           79 YQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             EEEETTCSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             EEEEecCCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            444445788999999999998877544 111  23355688888888788999999999998888766322     1467


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      .+.|. +|..++...  +.|.+.|..+++.+..+.-.             ....+.|+|+|+++.+++++...+.+.+.+
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            88888 776555553  89999999999998888521             135689999999987777776778888888


Q ss_pred             cCCC
Q 008058          229 TDGV  232 (579)
Q Consensus       229 ~~~~  232 (579)
                      +...
T Consensus       235 l~~~  238 (266)
T 2iwa_A          235 LHLV  238 (266)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            7654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.09  E-value=2.3e-11  Score=121.09  Aligned_cols=184  Identities=14%  Similarity=0.128  Sum_probs=103.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC-Cee-
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK-GIS-  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~v~-  163 (579)
                      +..+++++.+|.|+.||..+|+.++++..   +.+.+..+.+++..+++++.||.|+.||..+|+.+..+..+.. .+. 
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            77899999999999999999999988743   4555555666787888888999999999999988766653321 110 


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +..+. ++..+++++  +.|+.||.++|+.+.++..+.    ...++|++..+++++ .|+.|+.||..+++..     .
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~-~dg~v~a~d~~tG~~~-----W  154 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR-TEYTITMYDTKTRELR-----W  154 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEE-EEEEEECCCSSSSSCC-----C
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe-cCCEEEEEECCCCCEE-----E
Confidence            11111 234455554  899999999999887776553    234567777888877 6899999999988754     1


Q ss_pred             eeecCceeeEeEEecCCcccCCC---cEEEEEEcCCeEEEEECCCceeeccc
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAG---LYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      ......  .....+.     ++.   ..+++++.||.++.||..+++.+...
T Consensus       155 ~~~~~~--~~~~~~~-----~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          155 NATYFD--YAASLPE-----DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             EEEEEE--ECCBCCC-----CCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             eEeccc--ccCcccc-----CCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            111111  1111111     221   45777899999999999999876544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.07  E-value=3.1e-08  Score=98.89  Aligned_cols=224  Identities=16%  Similarity=0.137  Sum_probs=144.6

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      ++..++.++.++.|..+|..+|+....+......     .+.+            +.            .+..+++++.+
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-----~~~p------------~~------------~~~~v~v~~~~  152 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-----LSRP------------VV------------SDGLVLIHTSN  152 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC-----CSCC------------EE------------ETTEEEEECTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce-----EcCC------------EE------------ECCEEEEEcCC
Confidence            4567888888999999999999988776532211     0000            00            04578889999


Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCE------EEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC--------
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGV------SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG--------  161 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V------~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------  161 (579)
                      +.|..+|..+|+.+++....  .++      .....  .+..++.++.++.+..+|..+|+.+..+......        
T Consensus       153 g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~  228 (376)
T 3q7m_A          153 GQLQALNEADGAVKWTVNLD--MPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL  228 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECC--C-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred             CeEEEEECCCCcEEEEEeCC--CCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence            99999999999988776432  111      11122  2456888888999999999999988776532110        


Q ss_pred             --e-eEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 --I-SCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 --v-~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                        + ....+ .++.+++.+. +.+..+|.++++.+....  ......+...  +..++.++ .++.+..+|..+++..  
T Consensus       229 ~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~~~--~~~~~~~~~~--~~~l~~~~-~~g~l~~~d~~tG~~~--  300 (376)
T 3q7m_A          229 SDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWKRE--LGSVNDFIVD--GNRIYLVD-QNDRVMALTIDGGVTL--  300 (376)
T ss_dssp             -CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEEEC--CCCEEEEEEE--TTEEEEEE-TTCCEEEEETTTCCEE--
T ss_pred             cccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEeecc--CCCCCCceEE--CCEEEEEc-CCCeEEEEECCCCcEE--
Confidence              1 11111 1344444333 899999999998876654  2334444443  44666666 6889999999988743  


Q ss_pred             eeEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          238 SCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                         .... ...........       .+..|++++.+|.++.||..+++.+...
T Consensus       301 ---w~~~~~~~~~~~~~~~-------~~~~l~v~~~~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          301 ---WTQSDLLHRLLTSPVL-------YNGNLVVGDSEGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             ---EEECTTTTSCCCCCEE-------ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ---EeecccCCCcccCCEE-------ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence               2222 11111111122       3467888999999999999999876543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.07  E-value=6.1e-08  Score=104.19  Aligned_cols=199  Identities=11%  Similarity=0.103  Sum_probs=128.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+..+..............    ....   .....           .+..+++++.++
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~----~~~~---~~~a~-----------~~~~v~v~~~dg  138 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC----DVVN---RGVAL-----------WKGKVYVGAWDG  138 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS----CSCC---CCCEE-----------ETTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc----cCCC---CCceE-----------ECCEEEEEcCCC
Confidence            44677777789999999999999988864332111000000    0000   00000           156789999999


Q ss_pred             eEEEEEccCCeEEEEecCC-CC---CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC-----
Q 008058           97 DVLALAVSAGQLKWRLSDC-HP---GGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG-----  161 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~-h~---~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~-----  161 (579)
                      .|..+|..+|+.++++... ..   ..+.+--.- .+..++.++.      +|.|+.||..+|+.+..+......     
T Consensus       139 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~  217 (677)
T 1kb0_A          139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF  217 (677)
T ss_dssp             EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             EEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence            9999999999998887532 10   112111011 2345555543      799999999999998877643211     


Q ss_pred             ---------------------------eeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeE
Q 008058          162 ---------------------------ISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQ  193 (579)
Q Consensus       162 ---------------------------v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~  193 (579)
                                                 ...++++|++..++.+.  +                   .|..+|.++|+.+.
T Consensus       218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W  297 (677)
T 1kb0_A          218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW  297 (677)
T ss_dssp             SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred             cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence                                       13578899888888776  2                   49999999999887


Q ss_pred             Eeec--CC-------CCEEEEEEecCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008058          194 KFSG--HP-------GAVRFMTFSDNG---KYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       194 ~~~~--h~-------~~v~~l~~~~~~---~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .++.  |.       ....-+....+|   ..++.++ .+|.++++|..+++..
T Consensus       298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKFI  350 (677)
T ss_dssp             EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             EEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCEe
Confidence            7753  21       122233444577   5666665 7999999999998754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=3.9e-08  Score=105.57  Aligned_cols=241  Identities=19%  Similarity=0.230  Sum_probs=155.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-   94 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-   94 (579)
                      ++..++.++.|+.|..+|..+|+.+..+............+.+            +..            +..+++++. 
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v~------------~~~v~vg~~~  171 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP------------RVV------------KGKVIIGNGG  171 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC------------EEE------------TTEEEECCBC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCC------------EEE------------CCEEEEeCCC
Confidence            3557888888999999999999999887642211000000000            000            344566554 


Q ss_pred             -----CCeEEEEEccCCeEEEEecCC--CC----------------------------CCEEEEEEccCCCEEEEEeCCC
Q 008058           95 -----GGDVLALAVSAGQLKWRLSDC--HP----------------------------GGVSAISFATHGSCIYSAGADG  139 (579)
Q Consensus        95 -----~g~i~iwd~~~~~~~~~~~~~--h~----------------------------~~V~~l~~~~~~~~l~s~~~dg  139 (579)
                           +|.|..+|..+|+.++++...  ..                            .....+++.|++..++.++.++
T Consensus       172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g  251 (668)
T 1kv9_A          172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG  251 (668)
T ss_dssp             TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred             CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence                 488999999999998877421  10                            0112468888888888887776


Q ss_pred             -------------------cEEEEeCCCCceeeEeecC--C-------CCeeEEEEccCCC---EEEEEC--CeEEEEEC
Q 008058          140 -------------------MVCEIDPLTGSLLGKFRAS--T-------KGISCMAVSSDGK---MLATAA--GQLKTFNC  186 (579)
Q Consensus       140 -------------------~v~iwd~~~~~~~~~~~~~--~-------~~v~~l~~~p~g~---~l~~~~--g~i~vwd~  186 (579)
                                         .|..+|..+|+.+..++..  .       .++....+..+|+   .++.++  |.++++|.
T Consensus       252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~  331 (668)
T 1kv9_A          252 SPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDR  331 (668)
T ss_dssp             ESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred             CccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEEC
Confidence                               3999999999998887642  1       2233333344675   566666  89999999


Q ss_pred             CCCeeeEEeecCCC------------C------------------------EEEEEEecCCCEEEEEe------------
Q 008058          187 SDHKKMQKFSGHPG------------A------------------------VRFMTFSDNGKYVLSSA------------  218 (579)
Q Consensus       187 ~~~~~~~~~~~h~~------------~------------------------v~~l~~~~~~~~l~s~s------------  218 (579)
                      .+|+.+...+....            +                        -..++++|+...++...            
T Consensus       332 ~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~  411 (668)
T 1kv9_A          332 TNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGK  411 (668)
T ss_dssp             TTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGG
T ss_pred             CCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecc
Confidence            99998754432110            0                        01267788766655421            


Q ss_pred             -----------------------cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe
Q 008058          219 -----------------------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV  275 (579)
Q Consensus       219 -----------------------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~  275 (579)
                                             ..++.|..||+.+++..     ...............      ..+.++++++.||.
T Consensus       412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~vf~g~~dg~  480 (668)
T 1kv9_A          412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA-----WKVPYPTHWNGGTLS------TAGNLVFQGTAAGQ  480 (668)
T ss_dssp             GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE-----EEEEESSSCCCCEEE------ETTTEEEEECTTSE
T ss_pred             ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE-----EEccCCCCCcCceeE------eCCCEEEEECCccc
Confidence                                   12478999999988743     333332222221211      35678888999999


Q ss_pred             EEEEECCCceeecccC
Q 008058          276 CYIWYGQNIEELRNTK  291 (579)
Q Consensus       276 i~iwd~~~~~~~~~~~  291 (579)
                      ++.||.++++.+...+
T Consensus       481 l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          481 MHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEETTTCCEEEEEE
T ss_pred             chhhhhhcChhheEec
Confidence            9999999999886554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=1.7e-07  Score=95.96  Aligned_cols=189  Identities=8%  Similarity=0.048  Sum_probs=133.1

Q ss_pred             CcEEEEEECCC-eEEEEEccCCeEEEEecCCCCCCEEEEEE-c-cCCCEEEEEe------------------CCCcEEEE
Q 008058           86 SSLLVLGTGGG-DVLALAVSAGQLKWRLSDCHPGGVSAISF-A-THGSCIYSAG------------------ADGMVCEI  144 (579)
Q Consensus        86 ~~~l~~~~~~g-~i~iwd~~~~~~~~~~~~~h~~~V~~l~~-~-~~~~~l~s~~------------------~dg~v~iw  144 (579)
                      +++++++..++ .|.+.|+.+.++...+.-.......++++ + |+++++++++                  .++.+.++
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            67777777654 59999999999876332233456889998 5 9999998884                  34579999


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C---------------------------------------eEEEE
Q 008058          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G---------------------------------------QLKTF  184 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g---------------------------------------~i~vw  184 (579)
                      |..+.+...++.... ....++++|+|+++++++ +                                       .|.|.
T Consensus       181 D~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          181 DADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             ETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            999998888877533 457788999999988776 2                                       26667


Q ss_pred             ECCC--Cee-eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccc-eeEEeeecCceeeEeEE
Q 008058          185 NCSD--HKK-MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSA-SCVLAMEHPAVFMDCRC  254 (579)
Q Consensus       185 d~~~--~~~-~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------~~~-~~~~~~~~~~~~~~~~~  254 (579)
                      |.++  ++. +..++.. ....++.++|||+++++++..+.+|.++|+.+.+.      ... .......- +.-..-..
T Consensus       260 D~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~a  337 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTA  337 (595)
T ss_dssp             ECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEE
T ss_pred             eCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEE
Confidence            7766  444 4455432 24567999999999999988889999999986531      000 11222222 22234556


Q ss_pred             ecCCcccCCCcEEEEE-EcCCeEEEEECCC
Q 008058          255 IDNGGVDDAGLYVLAI-SETGVCYIWYGQN  283 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~  283 (579)
                      |+     |+| ++.+. -.|++|.+||+++
T Consensus       338 F~-----~dG-~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FD-----GRG-NAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EC-----TTS-EEEEEETTTTEEEEEEHHH
T ss_pred             EC-----CCC-eEEEEEecCCcEEEEEhhH
Confidence            76     899 55554 4599999999877

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=7.5e-08  Score=93.00  Aligned_cols=186  Identities=13%  Similarity=0.055  Sum_probs=118.9

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCe
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v  162 (579)
                      .++++...++.|..|+. +++.. .+ ..+...+.+++++++|+.+++...++.|..||.. ++........    ...+
T Consensus        58 ~l~~~d~~~~~i~~~~~-~g~~~-~~-~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~  133 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWRE-DGTVD-VL-LDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP  133 (305)
T ss_dssp             EEEEEETTTTEEEEEET-TSCEE-EE-EESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred             EEEEEECCCCEEEEEeC-CCCEE-EE-eCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence            36777778889999998 45432 22 2355678999999999966665566889999975 5533222111    1346


Q ss_pred             eEEEEccCCCEEEE----EC---------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC---
Q 008058          163 SCMAVSSDGKMLAT----AA---------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG---  220 (579)
Q Consensus       163 ~~l~~~p~g~~l~~----~~---------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~---  220 (579)
                      +.++++|+|++.++    |.               +.|+.||..+++.....  .......++|+|+++.|+.+...   
T Consensus       134 ~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          134 NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            78999999998886    21               46788887666544332  34557889999999987776533   


Q ss_pred             --CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          221 --ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       221 --d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                        ++.|.+|++...... ....+. .........+.++     ++|++ .+++.+ .|.+|+.+ ++.+.
T Consensus       212 ~~~~~i~~~~~~~~~l~-~~~~~~-~~~~~~pdgi~~d-----~~G~l-wv~~~~-gv~~~~~~-g~~~~  271 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALH-DRRHFA-SVPDGLPDGFCVD-----RGGWL-WSSSGT-GVCVFDSD-GQLLG  271 (305)
T ss_dssp             -CCCEEEEEEEETTEEE-EEEEEE-CCSSSCCCSEEEC-----TTSCE-EECCSS-EEEEECTT-SCEEE
T ss_pred             CCCCEEEEEEecCCCcc-CCeEEE-ECCCCCCCeEEEC-----CCCCE-EEecCC-cEEEECCC-CCEEE
Confidence              268999998765311 111111 1112223445565     78884 444444 59999974 44443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.95  E-value=3e-08  Score=97.51  Aligned_cols=221  Identities=10%  Similarity=-0.044  Sum_probs=135.3

Q ss_pred             cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE----------CCCe
Q 008058           28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT----------GGGD   97 (579)
Q Consensus        28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~----------~~g~   97 (579)
                      +|.++|..+++.+.++.....+  .+.++++                           +..++++.          .++.
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spD---------------------------g~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHS---------------------------GSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTT---------------------------SSCEEEEEEEETTTTSSSEEEE
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCC---------------------------CCEEEEEcccccccccCCCCCE
Confidence            7889999999999988754443  4555555                           66677776          3677


Q ss_pred             EEEEEccCCeEEEEecCC--C----CCCEEEEEEccCCCEEEEEeC--CCcEEE--EeCCCCceeeEeecCC--------
Q 008058           98 VLALAVSAGQLKWRLSDC--H----PGGVSAISFATHGSCIYSAGA--DGMVCE--IDPLTGSLLGKFRAST--------  159 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~~~--h----~~~V~~l~~~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~--------  159 (579)
                      |.+||+.+++.+.++.-+  .    ......+.|+|||++++.+..  +..|.+  +|+.+   +..+....        
T Consensus        98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g  174 (368)
T 1mda_H           98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEE
T ss_pred             EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCC
Confidence            999999999998777422  0    123568999999999998874  457888  89865   23332100        


Q ss_pred             ----------CCeeEEEE--------------------------ccCCCEEEEEC-CeEEEEECCCCe--eeEEeec---
Q 008058          160 ----------KGISCMAV--------------------------SSDGKMLATAA-GQLKTFNCSDHK--KMQKFSG---  197 (579)
Q Consensus       160 ----------~~v~~l~~--------------------------~p~g~~l~~~~-g~i~vwd~~~~~--~~~~~~~---  197 (579)
                                +.+..+..                          .+++..++..+ +.+.+.|..+..  .+..+.-   
T Consensus       175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~  254 (368)
T 1mda_H          175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES  254 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCT
T ss_pred             CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccc
Confidence                      00001110                          12222222221 456666664321  2222210   


Q ss_pred             ----CC---CCEEEEEEecCCCEEEEEec---C-----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC
Q 008058          198 ----HP---GAVRFMTFSDNGKYVLSSAV---G-----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD  262 (579)
Q Consensus       198 ----h~---~~v~~l~~~~~~~~l~s~s~---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                          +.   .....+.|+|+++.++.+..   .     ++.+.++|+.+.+..     ..+.-.. ....+.++     |
T Consensus       255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv-----~~i~vg~-~p~gi~~s-----~  323 (368)
T 1mda_H          255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS-----GPISNGH-DSDAIIAA-----Q  323 (368)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE-----ECCEEEE-EECEEEEC-----C
T ss_pred             cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEE-----EEEECCC-CcceEEEC-----C
Confidence                00   11112689999998887642   1     235669999998744     2222221 24556676     8


Q ss_pred             CCcE-EEEEE-cCCeEEEEECCCceeecccC
Q 008058          263 AGLY-VLAIS-ETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       263 ~~~~-l~s~~-~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ||++ +++.. .++.|.++|+.+++.+..++
T Consensus       324 Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            9985 55555 49999999999999887665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.92  E-value=7.2e-08  Score=95.31  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=131.5

Q ss_pred             CcEEEEEECCCeEEEEEccCC----eEEEEec------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAG----QLKWRLS------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~----~~~~~~~------~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~  149 (579)
                      ..+++.+..++.|+++|+.+.    +....+.      +.-...-..+...|+| .++++..+      |.|.++|..++
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            345556667788999999765    5554441      0011245677888999 77776655      78999999999


Q ss_pred             ceeeEeecCCC---CeeEEEEccCCCEEEEE---------------------CCeEEEEECCCCeeeEEeecC-C-CCEE
Q 008058          150 SLLGKFRASTK---GISCMAVSSDGKMLATA---------------------AGQLKTFNCSDHKKMQKFSGH-P-GAVR  203 (579)
Q Consensus       150 ~~~~~~~~~~~---~v~~l~~~p~g~~l~~~---------------------~g~i~vwd~~~~~~~~~~~~h-~-~~v~  203 (579)
                      +.+.++.....   .-+.+-|+|+++.+++.                     +++|.+||+.+++.+.++.-. . ....
T Consensus       175 ~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~  254 (462)
T 2ece_A          175 EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL  254 (462)
T ss_dssp             CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred             eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence            99999874322   23457889999999988                     379999999999888887642 1 2345


Q ss_pred             EEEE--ecCCCEEEEEec-----CCCeEEEEEcCCCccccceeEEeeecC----------------ceeeEeEEecCCcc
Q 008058          204 FMTF--SDNGKYVLSSAV-----GERYIALWRTDGVKKQSASCVLAMEHP----------------AVFMDCRCIDNGGV  260 (579)
Q Consensus       204 ~l~~--~~~~~~l~s~s~-----~d~~i~vwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  260 (579)
                      .+.|  +|++++++.++.     .+++|.+|....++.. ...+..+...                ......+.++    
T Consensus       255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~-~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS----  329 (462)
T 2ece_A          255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN-AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS----  329 (462)
T ss_dssp             EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE-EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC----
T ss_pred             eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee-EEEEEeCCCccccccccccccccccCCCceeEEEEC----
Confidence            6666  999999888875     6778888877654321 1111111100                1223445565    


Q ss_pred             cCCCcEEEEEEc-CCeEEEEECCC
Q 008058          261 DDAGLYVLAISE-TGVCYIWYGQN  283 (579)
Q Consensus       261 ~~~~~~l~s~~~-dg~i~iwd~~~  283 (579)
                       +||++|.++.. .+.|.+||+..
T Consensus       330 -~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          330 -LDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             -TTSCEEEEEETTTTEEEEEECSS
T ss_pred             -CCCCEEEEEeCCCCEEEEEEecC
Confidence             99999998877 78999999863

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.92  E-value=2.9e-07  Score=96.74  Aligned_cols=245  Identities=13%  Similarity=0.104  Sum_probs=152.3

Q ss_pred             EEccCCCE----EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           12 SFSPALDY----FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        12 ~fs~dg~~----las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +++|.+..    ++.++.|+.|.-+|..+|+.+...............+.+            +..            +.
T Consensus       112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP------------~v~------------~g  167 (599)
T 1w6s_A          112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KD  167 (599)
T ss_dssp             EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TT
T ss_pred             EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCC------------EEE------------CC
Confidence            55554444    888888999999999999998876532210000001111            000            34


Q ss_pred             EEEEEEC------CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEE
Q 008058           88 LLVLGTG------GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAIS  124 (579)
Q Consensus        88 ~l~~~~~------~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~  124 (579)
                      .+++++.      +|.|+.+|..+|+.++++......                                    .+ ..++
T Consensus       168 ~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a  247 (599)
T 1w6s_A          168 KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYA  247 (599)
T ss_dssp             EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCE
T ss_pred             EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCcccccee
Confidence            4566653      789999999999998876432211                                    01 1345


Q ss_pred             EccCCCEEEEEeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEEc-cCC---CEEE
Q 008058          125 FATHGSCIYSAGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAVS-SDG---KMLA  175 (579)
Q Consensus       125 ~~~~~~~l~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~-p~g---~~l~  175 (579)
                      +.++...++.+..+                +.|..+|..+|+.+..++....         ...-+... .+|   +.++
T Consensus       248 ~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~  327 (599)
T 1w6s_A          248 YDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLT  327 (599)
T ss_dssp             EETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEE
T ss_pred             EeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEE
Confidence            66777788877665                3799999999999888765321         11112222 567   4666


Q ss_pred             EEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEE
Q 008058          176 TAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYV  214 (579)
Q Consensus       176 ~~~--g~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~~~~~~l  214 (579)
                      .++  |.++++|.++|+.+....-..             .++                          ..++++|+...+
T Consensus       328 ~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~  407 (599)
T 1w6s_A          328 HPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELF  407 (599)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEE
Confidence            666  899999999999876654211             111                          245677776665


Q ss_pred             EEEec--------------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEec
Q 008058          215 LSSAV--------------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID  256 (579)
Q Consensus       215 ~s~s~--------------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      ++...                                      .++.+..||+.+++..     ............... 
T Consensus       408 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~~~-  481 (599)
T 1w6s_A          408 FMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-----WEKMERFAVWGGTMA-  481 (599)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE-
T ss_pred             EEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-----eEecCCCCccCcceE-
Confidence            54320                                      2467888888887643     332222111111111 


Q ss_pred             CCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       257 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                           ..+..++.++.||.++.||.++|+.+...+
T Consensus       482 -----tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          482 -----TAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             -----ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -----ecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence                 256777789999999999999999887653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.92  E-value=5.4e-08  Score=95.68  Aligned_cols=165  Identities=8%  Similarity=-0.113  Sum_probs=109.5

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecC-------C
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRAS-------T  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-------~  159 (579)
                      .|.++|..+++.+.++..+.. +  .+.|+|||++++.+.          .++.|.+||+.+++.+.++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            788999999999988876654 4  799999999999886          3688999999999999998654       1


Q ss_pred             CCeeEEEEccCCCEEEEEC----CeEEE--EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC--
Q 008058          160 KGISCMAVSSDGKMLATAA----GQLKT--FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG--  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~----g~i~v--wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~--  231 (579)
                      .....++++|||++++++.    +.+.+  +|..+   +.++.-- +.   ..+.|+++..+.+.+.|+.+.+.++..  
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~  196 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence            2457899999999999874    57888  88876   4444321 11   123355443333333688888888876  


Q ss_pred             ---Cccccce-eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          232 ---VKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       232 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                         ++..... ........  ..   .+      +++..++..+. +.+.+.|..+
T Consensus       197 ~~~~~v~~~~t~~i~vg~~--P~---~~------~~~~~~~~vs~-~~V~viD~~~  240 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQ--AA---QA------NYPGMLVWAVA-SSILQGDIPA  240 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSC--CE---EE------TTTTEEEECBS-SCCEEEECCS
T ss_pred             ccCCeEEEEeeeeeeCCCC--cc---cc------ccCCEEEEEcC-CEEEEEECCC
Confidence               3211000 00111111  11   13      45566666666 8888888754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.92  E-value=3e-07  Score=96.67  Aligned_cols=241  Identities=15%  Similarity=0.129  Sum_probs=151.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC-
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG-   94 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~-   94 (579)
                      ++..++.++.|+.|..+|..+|+.+..+............+.+            +..            +..+++++. 
T Consensus       114 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P------------~v~------------~g~v~vg~~~  169 (571)
T 2ad6_A          114 GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSG  169 (571)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBC
T ss_pred             ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCC------------EEE------------CCEEEEEecC
Confidence            3557788888999999999999998876532210000000000            000            345666665 


Q ss_pred             -----CCeEEEEEccCCeEEEEecCCCCC------------------------------------CE-EEEEEccCCCEE
Q 008058           95 -----GGDVLALAVSAGQLKWRLSDCHPG------------------------------------GV-SAISFATHGSCI  132 (579)
Q Consensus        95 -----~g~i~iwd~~~~~~~~~~~~~h~~------------------------------------~V-~~l~~~~~~~~l  132 (579)
                           +|.|..+|..+|+.++++......                                    .+ ..+++.++...+
T Consensus       170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v  249 (571)
T 2ad6_A          170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF  249 (571)
T ss_dssp             GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred             CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence                 789999999999998876432110                                    00 135667766777


Q ss_pred             EEEeCC----------------CcEEEEeCCCCceeeEeecCC---------CCeeEEEEccCCC---EEEEEC--CeEE
Q 008058          133 YSAGAD----------------GMVCEIDPLTGSLLGKFRAST---------KGISCMAVSSDGK---MLATAA--GQLK  182 (579)
Q Consensus       133 ~s~~~d----------------g~v~iwd~~~~~~~~~~~~~~---------~~v~~l~~~p~g~---~l~~~~--g~i~  182 (579)
                      +.+..+                +.|..+|..+|+.+..++...         ....-+...++|+   .++.++  |.++
T Consensus       250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~  329 (571)
T 2ad6_A          250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILY  329 (571)
T ss_dssp             EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEE
T ss_pred             EEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEE
Confidence            776542                359999999999988776421         1111123334774   566666  8999


Q ss_pred             EEECCCCeeeEEeecCC-------------CCE--------------------------EEEEEecCCCEEEEEec----
Q 008058          183 TFNCSDHKKMQKFSGHP-------------GAV--------------------------RFMTFSDNGKYVLSSAV----  219 (579)
Q Consensus       183 vwd~~~~~~~~~~~~h~-------------~~v--------------------------~~l~~~~~~~~l~s~s~----  219 (579)
                      ++|..+++.+..+.-..             .++                          ..++++|+...+++.+.    
T Consensus       330 ~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  409 (571)
T 2ad6_A          330 TLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICM  409 (571)
T ss_dssp             EEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEE
T ss_pred             EEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccc
Confidence            99999999877654221             111                          23578888777766541    


Q ss_pred             --------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEE
Q 008058          220 --------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV  267 (579)
Q Consensus       220 --------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  267 (579)
                                                      .++.|..||..+++..     ...............      ..+..+
T Consensus       410 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-----W~~~~~~~~~~~~~~------t~gg~v  478 (571)
T 2ad6_A          410 DWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLV  478 (571)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEE
T ss_pred             cccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-----EEecCCCCccceeEE------ECCCEE
Confidence                                            2478999999888743     333322222211111      245677


Q ss_pred             EEEEcCCeEEEEECCCceeecccC
Q 008058          268 LAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       268 ~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++++.||.++.||.++++.+...+
T Consensus       479 ~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          479 WYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCCEEEEEe
Confidence            779999999999999999886554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.89  E-value=8.4e-08  Score=103.90  Aligned_cols=186  Identities=12%  Similarity=0.031  Sum_probs=121.3

Q ss_pred             CcEEEEEE-CC----CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCc-------------EEEEeCC
Q 008058           86 SSLLVLGT-GG----GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGM-------------VCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~-~~----g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~-------------v~iwd~~  147 (579)
                      ++.++.+. ..    ..|++||+.+++.+.....+  ....+++|+ ||+.|+.++.+..             |++|++.
T Consensus       140 g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg  216 (693)
T 3iuj_A          140 GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG  216 (693)
T ss_dssp             SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred             CCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence            66666544 23    35999999999865432211  112567899 9999998887743             9999998


Q ss_pred             CCce--eeEee--c-CCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCe-eeEEeecCCCCEEEEEEecCCCEEE
Q 008058          148 TGSL--LGKFR--A-STKGISCMAVSSDGKMLATAA------GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       148 ~~~~--~~~~~--~-~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      ++..  ...+.  . +...+.++.|+|||++|+...      +.|+++|+.++. ....+..+....... |+++|..|+
T Consensus       217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~  295 (693)
T 3iuj_A          217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLY  295 (693)
T ss_dssp             SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred             CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence            7643  22232  2 344578899999999886543      489999998763 455666666666555 667666666


Q ss_pred             EEecCC---CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CC--eEEEEECCCce
Q 008058          216 SSAVGE---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TG--VCYIWYGQNIE  285 (579)
Q Consensus       216 s~s~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~  285 (579)
                      ..+..+   +.|..|++.++.......  ...+....+   .++     +++.+|+.... +|  .|++|+++.+.
T Consensus       296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~---~~s-----~~g~~lv~~~~~~g~~~l~~~d~~g~~  361 (693)
T 3iuj_A          296 LLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQVL---TVH-----SGSGYLFAEYMVDATARVEQFDYEGKR  361 (693)
T ss_dssp             EEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSCE---EEE-----EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred             EEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCEE---EEE-----EECCEEEEEEEECCeeEEEEEECCCCe
Confidence            555333   579999998765421111  123333333   555     77887777665 44  78999987553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=1.9e-07  Score=85.67  Aligned_cols=173  Identities=8%  Similarity=0.067  Sum_probs=119.8

Q ss_pred             EEccCCCEEEEEeCCC--cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICSGDA--RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|+ ++.++.+.+.+|  .|+++|.++|+.+..+.....     .|.         ..   +..  .         +..|
T Consensus        49 ~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-----~Fg---------eG---it~--~---------g~~l   99 (262)
T 3nol_A           49 FYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-----YFG---------EG---ISD--W---------KDKI   99 (262)
T ss_dssp             EEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-----CCE---------EE---EEE--E---------TTEE
T ss_pred             EEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-----cce---------eE---EEE--e---------CCEE
Confidence            677 666666666665  899999999999887753211     000         00   010  0         3334


Q ss_pred             EEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCee
Q 008058           90 VLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGIS  163 (579)
Q Consensus        90 ~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~  163 (579)
                      +..+ .++.+.+||..+.+.+.++..+..+  +.+  ++|++.|+.+..++.|.++|..+.+.+.++....     ..++
T Consensus       100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          100 VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEESSSSEEEEEETTTCCEEEEEECSSCC--CCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEeeCCEEEEEECccCcEEEEEECCCCc--eEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            4444 5788999999999998777543211  333  3578888877778889999999999888866421     2345


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC------------CCCEEEEEEecCCCEEEEEe
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~l~s~s  218 (579)
                      .+.|. +|++.+..-  +.|.+.|.++++.+..+.-.            ..-.+.|+|+|+++.|+.+|
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            67876 776665553  89999999999998887532            13468999999988887776

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=2e-07  Score=90.83  Aligned_cols=249  Identities=16%  Similarity=0.181  Sum_probs=157.2

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccc--cCccceEEeeeccccccccc-----
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHL--SVDYTCMKWLSVDRKKKRKL-----   84 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~w~~~~~~~~~~~-----   84 (579)
                      .++.+|. +..++.++.|..|| .+++....+......+..+....+   +..  .... ..++.+ +.+.....     
T Consensus        26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~---g~l~v~t~~-l~~~d~-~g~~~~~~~~~~~   98 (330)
T 3hxj_A           26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKD---GTIYFGSDK-VYAINP-DGTEKWRFDTKKA   98 (330)
T ss_dssp             EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTT---TEECCSSCE-EEEECC-CGGGGGGSCC---
T ss_pred             eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecC---CcEEEecCc-EEEECC-CCcEEEEEECCCC
Confidence            4445564 56667788899999 888877655433222222222211   111  0011 222222 21111110     


Q ss_pred             -------CCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           85 -------GSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        85 -------~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                             .+..+.+++.++.|..+|.. ++...... .+...+.++...+++. ++.++.++.|..+|.. ++....+..
T Consensus        99 ~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A           99 IVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             --CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             cccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence                   14567888889999999998 77765553 2444566677777776 6667788999999988 887777776


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ....+.++...++|.+.+.+ +.|..|| .+++.+..+......+.++...++|...+ ++ .++.+..++.. ++.   
T Consensus       175 ~~~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-~~~gl~~~~~~-g~~---  246 (330)
T 3hxj_A          175 NDAITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TS-LDGHLYAINPD-GTE---  246 (330)
T ss_dssp             SSCCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EE-TTTEEEEECTT-SCE---
T ss_pred             CCCceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-Ec-CCCeEEEECCC-CCE---
Confidence            66677888888888877777 9999999 77777777665666788888988886554 44 47888888743 322   


Q ss_pred             eeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                        .................     +++ .|..++.+|.|..+|. +++.+.
T Consensus       247 --~~~~~~~~~~~~~~~~~-----~~g-~l~v~t~~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          247 --KWRFKTGKRIESSPVIG-----NTD-TIYFGSYDGHLYAINP-DGTEKW  288 (330)
T ss_dssp             --EEEEECSSCCCSCCEEC-----TTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred             --eEEeeCCCCccccceEc-----CCC-eEEEecCCCCEEEECC-CCcEEE
Confidence              12222222222333332     344 5778888999999995 565543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=4e-07  Score=88.68  Aligned_cols=216  Identities=19%  Similarity=0.220  Sum_probs=140.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..+..++.++.|..+|.. ++....+......+...                  ...          ....+.+++.++
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~------------------~~~----------~~g~l~vgt~~~  157 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP------------------IVS----------EDGTIYVGSNDN  157 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC------------------EEC----------TTSCEEEECTTS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee------------------EEc----------CCCEEEEEcCCC
Confidence            3456667777888888877 66655544222111111                  100          033477888889


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT  176 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~  176 (579)
                      .|..||.. ++...... .....+.++.+.++|. ++.++  +.|..+| .+++....+......+.++...++|.+.+.
T Consensus       158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~  231 (330)
T 3hxj_A          158 YLYAINPD-GTEKWRFK-TNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT  231 (330)
T ss_dssp             EEEEECTT-SCEEEEEE-CSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE
T ss_pred             EEEEECCC-CCEeEEEe-cCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE
Confidence            99999999 77765553 2345667777777776 44454  7899999 788777776655567889999999887777


Q ss_pred             EC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEe
Q 008058          177 AA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       177 ~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                      .. +.+..+|. +++.+..+......+..+.+.+++.. ..++ .++.+..+|. +++..     .........+.....
T Consensus       232 t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~~ggl~~~d~-~g~~~-----~~~~~~~~~~~~~~~  302 (330)
T 3hxj_A          232 SLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTI-YFGS-YDGHLYAINP-DGTEK-----WNFETGSWIIATPVI  302 (330)
T ss_dssp             ETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCE-EEEC-TTCEEEEECT-TSCEE-----EEEECSSCCCSCCEE
T ss_pred             cCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeE-EEec-CCCCEEEECC-CCcEE-----EEEEcCCccccceEE
Confidence            76 88888874 56666666655444556667667754 4455 5778999985 44322     223333334444444


Q ss_pred             cCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          256 DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       256 ~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      .     ++|. |..++.+|.+++...+
T Consensus       303 d-----~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          303 D-----ENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             C-----TTCC-EEEECTTSCEEEEEC-
T ss_pred             c-----CCCE-EEEEcCCCeEEEEecc
Confidence            3     4555 6778999999988754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.84  E-value=2.6e-07  Score=90.79  Aligned_cols=188  Identities=10%  Similarity=0.107  Sum_probs=117.5

Q ss_pred             eEEEEccCCCEEEEEeC-----CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSG-----DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|+++|+++++-..     ++.|.+||..+++.+..+........            .......+++.+.       
T Consensus        70 ~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~------------~~~~~~~v~vd~~-------  130 (343)
T 2qe8_A           70 LGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITL------------SNSFVNDLAVDLI-------  130 (343)
T ss_dssp             EEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSC------------TTCCCCEEEEETT-------
T ss_pred             eEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcc------------cccccceEEEecC-------
Confidence            45699999986665433     57899999999997776653211000            0011123333322       


Q ss_pred             cCCcEEEEE-E---CCCeEEEEEccCCeEEEEecCCCC-----------------------------CCEEEEEEccCCC
Q 008058           84 LGSSLLVLG-T---GGGDVLALAVSAGQLKWRLSDCHP-----------------------------GGVSAISFATHGS  130 (579)
Q Consensus        84 ~~~~~l~~~-~---~~g~i~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~~~~~~  130 (579)
                        +..++++ .   .++.|.+||+.+++....+ .+|.                             ..+..++|+|+|+
T Consensus       131 --~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~  207 (343)
T 2qe8_A          131 --HNFVYISDPAPDDKAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE  207 (343)
T ss_dssp             --TTEEEEEECCSGGGCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC
T ss_pred             --CCEEEEEcCccCCCCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC
Confidence              2334444 3   5678999999888765333 2221                             2368999999999


Q ss_pred             EEEEEeCCC-cEEEEeCC---CCc-----eee--EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec
Q 008058          131 CIYSAGADG-MVCEIDPL---TGS-----LLG--KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG  197 (579)
Q Consensus       131 ~l~s~~~dg-~v~iwd~~---~~~-----~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~  197 (579)
                      .|+.+..++ .++.++..   .+.     ...  ...++......++++++|.++++..  +.|.+||..+++.......
T Consensus       208 ~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~  287 (343)
T 2qe8_A          208 WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD  287 (343)
T ss_dssp             EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC
Confidence            998887766 55555431   111     000  1112334567799999998888776  8999999856654332222


Q ss_pred             -CCCCEEEEEEecCCCEEEEEe
Q 008058          198 -HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       198 -h~~~v~~l~~~~~~~~l~s~s  218 (579)
                       +...+.+++|.++++.+++.+
T Consensus       288 ~~~~~p~~va~~~~g~l~v~~~  309 (343)
T 2qe8_A          288 EKLSWTDSFNFGSDGYLYFDCN  309 (343)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEC
T ss_pred             CceecCCeeEECCCCcEEEEeC
Confidence             245688999999988777665

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.83  E-value=4.2e-06  Score=78.80  Aligned_cols=190  Identities=9%  Similarity=-0.030  Sum_probs=118.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++++-..++.|..+++..+...... ........+++++|++..++.+. ..+.|.++++..................
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~  126 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG  126 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccE
Confidence            344444455678999999776543222 22335689999999776666554 5678999998643322222222246789


Q ss_pred             EEEccCCCEEEEEC-----CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          165 MAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       165 l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ++++|++..|+.+.     +.|..+++... ....+. ........++++|++..|+.+....+.|.++++......   
T Consensus       127 i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~---  202 (267)
T 1npe_A          127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---  202 (267)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---
T ss_pred             EEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE---
Confidence            99999655554443     47888887543 233332 233467899999988777777667789999998754321   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeeccc
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  290 (579)
                      ...  ...... ..++.       ++..|+.+. ..+.|.++|..+++.+...
T Consensus       203 ~~~--~~~~~P-~gi~~-------d~~~lyva~~~~~~v~~~d~~~g~~~~~i  245 (267)
T 1npe_A          203 KVL--EGLQYP-FAVTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (267)
T ss_dssp             EEE--ECCCSE-EEEEE-------ETTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEe--cCCCCc-eEEEE-------eCCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence            111  111112 22333       334555554 5689999999988776554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.78  E-value=2.1e-06  Score=78.00  Aligned_cols=174  Identities=10%  Similarity=0.156  Sum_probs=119.2

Q ss_pred             EEccCCCEEEEEeCC--CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICSGD--ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .|++ +.++.+.+.+  ..|+++|..+|+.+..+......     |         ...   +...          ++.+.
T Consensus        27 ~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-----f---------geG---i~~~----------~~~ly   78 (243)
T 3mbr_X           27 FYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-----F---------GAG---IVAW----------RDRLI   78 (243)
T ss_dssp             EEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-----C---------EEE---EEEE----------TTEEE
T ss_pred             EEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-----c---------eeE---EEEe----------CCEEE
Confidence            6765 5555555554  48999999999998877532110     0         000   0100          13444


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeE
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISC  164 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~  164 (579)
                      .+.-.++.+.+||..+.+.+.++..+..+  ++++  ++++.|+.+..++.|.++|..+.+.+.++....     ..++.
T Consensus        79 ~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           79 QLTWRNHEGFVYDLATLTPRARFRYPGEG--WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEECSSCC--CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            55556788999999999998887543222  4444  577777777788999999999999888776422     24566


Q ss_pred             EEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008058          165 MAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s  218 (579)
                      +.+. +|+.++..-  ..|.+.|.++++.+..+.-.             ..-.+.|+++|+++.|+.+|
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            7766 777665553  89999999999998877521             13468899999888777776

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.75  E-value=6.3e-06  Score=88.41  Aligned_cols=200  Identities=15%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+..+...............    ...  .....+            +..+++++.++
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~----~~~--~~~~~~------------~~~v~v~~~dg  127 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD----AVN--RGVALW------------GDKVYVGTLDG  127 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC----SCC--CCCEEE------------BTEEEEECTTS
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCcccccccccc----CCc--cceEEE------------CCEEEEEcCCC
Confidence            456777888899999999999999888643321110000000    000  000011            56788999999


Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCC--------
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTK--------  160 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~--------  160 (579)
                      .|..+|..+|+.+++...........+...|  .+..++.+..      +|.|+.+|..+|+.+..+.....        
T Consensus       128 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~  207 (668)
T 1kv9_A          128 RLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEH  207 (668)
T ss_dssp             EEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSS
T ss_pred             EEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccc
Confidence            9999999999998877542111000000111  1335555543      58999999999999888753110        


Q ss_pred             -----------------------CeeEEEEccCCCEEEEEC--C-------------------eEEEEECCCCeeeEEee
Q 008058          161 -----------------------GISCMAVSSDGKMLATAA--G-------------------QLKTFNCSDHKKMQKFS  196 (579)
Q Consensus       161 -----------------------~v~~l~~~p~g~~l~~~~--g-------------------~i~vwd~~~~~~~~~~~  196 (579)
                                             ....++++|++..++.+.  +                   .|..+|.++|+.+..++
T Consensus       208 ~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~  287 (668)
T 1kv9_A          208 PELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ  287 (668)
T ss_dssp             HHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE
T ss_pred             cccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee
Confidence                                   112468888888887776  3                   39999999999988776


Q ss_pred             c--CC-------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          197 G--HP-------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       197 ~--h~-------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .  |.       .+.....+..+|+   .++.++ .+|.++++|..+++..
T Consensus       288 ~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          288 VTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEE
T ss_pred             cCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCEe
Confidence            3  32       3333334445665   466655 7999999999998754

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.75  E-value=1.5e-06  Score=91.31  Aligned_cols=245  Identities=17%  Similarity=0.132  Sum_probs=148.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc-EEEEEEC-
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS-LLVLGTG-   94 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~l~~~~~-   94 (579)
                      +..++.++.|+.|.-+|..+|+.+..++...........+.+            +.... ..      ++. .+++++. 
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP------------~v~~~-~~------~G~~~v~vg~~~  177 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP------------TIVKD-GK------TGKVLLIHGSSG  177 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC------------EEEEC-TT------TCCEEEEECCBC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC------------EEeCC-Cc------CCcEEEEEeccc
Confidence            557778888999999999999998877533211000000011            00000 00      012 5666653 


Q ss_pred             -----CCeEEEEEccCCeEEEEecCCCC---------------------------------------CCE-EEEEEccCC
Q 008058           95 -----GGDVLALAVSAGQLKWRLSDCHP---------------------------------------GGV-SAISFATHG  129 (579)
Q Consensus        95 -----~g~i~iwd~~~~~~~~~~~~~h~---------------------------------------~~V-~~l~~~~~~  129 (579)
                           +|.|..+|..+|+.+++......                                       ..+ ..+++.|+.
T Consensus       178 ~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~  257 (582)
T 1flg_A          178 DEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET  257 (582)
T ss_dssp             GGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT
T ss_pred             cccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC
Confidence                 68899999999998876532100                                       000 134666777


Q ss_pred             CEEEEEeC--------------------C----CcEEEEeCCCCceeeEeec--CCC-------CeeEEEEc-cCCC---
Q 008058          130 SCIYSAGA--------------------D----GMVCEIDPLTGSLLGKFRA--STK-------GISCMAVS-SDGK---  172 (579)
Q Consensus       130 ~~l~s~~~--------------------d----g~v~iwd~~~~~~~~~~~~--~~~-------~v~~l~~~-p~g~---  172 (579)
                      ..++.+..                    |    +.|..+|..+|+.+..++.  |..       ...-+... .+|+   
T Consensus       258 g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~  337 (582)
T 1flg_A          258 NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK  337 (582)
T ss_dssp             TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE
T ss_pred             CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE
Confidence            77777663                    2    5899999999999888764  211       11112222 4674   


Q ss_pred             EEEEEC--CeEEEEECCCCeeeEEeecCC-------------CCE--------------------------------EEE
Q 008058          173 MLATAA--GQLKTFNCSDHKKMQKFSGHP-------------GAV--------------------------------RFM  205 (579)
Q Consensus       173 ~l~~~~--g~i~vwd~~~~~~~~~~~~h~-------------~~v--------------------------------~~l  205 (579)
                      .++.++  |.++++|.++|+.+..+....             .++                                ..+
T Consensus       338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~  417 (582)
T 1flg_A          338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM  417 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred             EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence            666676  899999999999887664321             000                                134


Q ss_pred             EEecCCCEEEEEec--------------------------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeE
Q 008058          206 TFSDNGKYVLSSAV--------------------------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCR  253 (579)
Q Consensus       206 ~~~~~~~~l~s~s~--------------------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      +++|+...+++...                                .++.|..||+.+++..     .............
T Consensus       418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-----W~~~~~~~~~~g~  492 (582)
T 1flg_A          418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-----WEHKEHLPLWAGV  492 (582)
T ss_dssp             EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-----EEEEESSCCCSCC
T ss_pred             eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-----EEecCCCCCcccc
Confidence            56665554444321                                2578999999888743     3332222211111


Q ss_pred             EecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          254 CIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       254 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ..      ..+..++.++.||.++.||.++|+.+...+
T Consensus       493 ~~------tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          493 LA------TAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EE------ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eE------eCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence            11      245678889999999999999999987654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.73  E-value=6.3e-06  Score=80.04  Aligned_cols=249  Identities=14%  Similarity=0.089  Sum_probs=136.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccc--cccccccCccceEEeeecccccccccCCcE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR--LEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++|+++|+++.++..++.|..|+..++... .+...............  ............+++.+.         ...
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~---------~g~   93 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ---------NNQ   93 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT---------TTE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCC---------CCc
Confidence            489999987888888899999998766543 22211000000000000  000000011223444321         234


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEe--cCC-CCCCEEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCC
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRL--SDC-HPGGVSAISFAT-HGSCIYSAGA-----------------DGMVCEIDPL  147 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~-h~~~V~~l~~~~-~~~~l~s~~~-----------------dg~v~iwd~~  147 (579)
                      |+++...+.|..+|..++......  ..+ ......++++.+ +|+..++...                 ++.|..||..
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            677766666888888766432111  111 123578999999 8976665432                 3679999987


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe--eeEEeecCCCCEEEEEEecCCCEEEEEecC--
Q 008058          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVG--  220 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~--  220 (579)
                      +++...... .......++++|+|+.|+.+.   +.|.+|++....  ....+....+ ...+++.++|++.++.. .  
T Consensus       174 ~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~-~~~  250 (322)
T 2fp8_A          174 TKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS-EEL  250 (322)
T ss_dssp             TTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE-EET
T ss_pred             CCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec-Ccc
Confidence            675433222 223457899999999776664   799999987521  1122221223 78899999998766654 2  


Q ss_pred             --------CCeEEEEEcCCCccccceeEEeeecC--ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          221 --------ERYIALWRTDGVKKQSASCVLAMEHP--AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       221 --------d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                              .+.|..+|.. ++..   ..+.....  ......+.+      .++...++....+.|..++++
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~---~~~~~~~g~~~~~~~~~~~------~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNIL---EVIPLPPPFAGEHFEQIQE------HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEE---EEEECCTTTTTSCCCEEEE------ETTEEEEECSSCSEEEEEEC-
T ss_pred             cccccCCCccEEEEECCC-CCEE---EEEECCCCCccccceEEEE------eCCEEEEeecCCCceEEEecc
Confidence                    3567777764 3321   11221111  122333334      355555555567788888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.73  E-value=9e-07  Score=81.12  Aligned_cols=173  Identities=9%  Similarity=0.053  Sum_probs=118.8

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|+ ++.++.+.+.+|.|+++|.++|+.+..+ ... ..    |..            .+..  .        ++.+..+
T Consensus        61 ~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~----Fge------------Git~--~--------g~~Ly~l  111 (268)
T 3nok_A           61 VFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NI----FAE------------GLAS--D--------GERLYQL  111 (268)
T ss_dssp             EEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TC----CEE------------EEEE--C--------SSCEEEE
T ss_pred             EEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-Cc----cee------------EEEE--e--------CCEEEEE
Confidence            666 3556666777889999999999987665 211 10    100            0000  0        1344445


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC-----CCeeEEE
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-----KGISCMA  166 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~l~  166 (579)
                      .-.++.+.+||..+.+.+.++..+..  =++++  +|++.|+.+..++.|.++|..+.+.+.++....     ..++.+.
T Consensus       112 tw~~~~v~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          112 TWTEGLLFTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             ESSSCEEEEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EccCCEEEEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            55678899999999999887753322  23444  578888888889999999999999888766422     1456778


Q ss_pred             EccCCCEEEEEC--CeEEEEECCCCeeeEEeecC-------------CCCEEEEEEecCCCEEEEEe
Q 008058          167 VSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGH-------------PGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       167 ~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~l~s~s  218 (579)
                      |. +|++.+..-  +.|.+.|.++++.+..+.-.             ..-.+.|+|+|+++.|+.+|
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            77 776665553  89999999999988877421             13568999999877666665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=9.3e-06  Score=75.35  Aligned_cols=183  Identities=14%  Similarity=0.068  Sum_probs=124.2

Q ss_pred             EEEEEEC---CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCee
Q 008058           88 LLVLGTG---GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~~~~~---~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      .|+.++.   ++.|.++|+.+++.+..+.-+.......+++.  ++.++.+. .++.+.++|..+++.+.++.....  .
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~--~  108 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK--D  108 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS--S
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC--C
Confidence            4666654   47899999999998877643322233455554  55655554 688999999999999998864311  1


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCC-----CCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP-----GAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      ...+++||+.++++.  +.|.++|..+.+.+.++.-..     ..++.+.|. +|+ +.+....++.|.+.|..+++.. 
T Consensus       109 g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~-  185 (266)
T 2iwa_A          109 GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL-  185 (266)
T ss_dssp             CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE-
T ss_pred             eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE-
Confidence            234666888777766  899999999998887775221     236788888 675 4444435789999999998754 


Q ss_pred             ceeEEeee-----------cCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCc
Q 008058          237 ASCVLAME-----------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNI  284 (579)
Q Consensus       237 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~  284 (579)
                        ....+.           ........++++     |+++.+++++ ..+++.+.++...
T Consensus       186 --~~I~~~g~~~~~~~~~~~~~~v~nGIa~~-----~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          186 --GWILLPNLRKKLIDEGFRDIDVLNGIAWD-----QENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             --EEEECHHHHHHHHHTTCTTCCCEEEEEEE-----TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             --EEEECCCcccccccccccccCceEEEEEc-----CCCCEEEEECCCCCeEEEEEEecc
Confidence              222221           112356778887     8876655554 5788888886543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.67  E-value=1.4e-05  Score=83.93  Aligned_cols=197  Identities=14%  Similarity=0.137  Sum_probs=120.5

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      +..++.++. ++.|.-+|. .+|+.+..+..............+    ....  ....            .+..+++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~--~~~~------------~~~~v~v~~~  123 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD----VVDR--GLAY------------GAGQIVKKQA  123 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC----SCCC--CCEE------------ETTEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccc----cccc--ccEE------------ECCEEEEEeC
Confidence            445666777 899999999 999999887633211000000000    0000  0000            1567889999


Q ss_pred             CCeEEEEEccCCeEEEEecCCC-C--CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCCCC---
Q 008058           95 GGDVLALAVSAGQLKWRLSDCH-P--GGVSA-ISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRASTKG---  161 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h-~--~~V~~-l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~---  161 (579)
                      ++.+..+|..+|+.+++..... .  ..+.+ .... ++ .++.++.      ++.|+.+|..+|+.+.++......   
T Consensus       124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~  201 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV  201 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence            9999999999999987764221 0  01111 1111 34 5666654      799999999999988876542210   


Q ss_pred             -----------------------------------eeEEEEccCCCEEEEECC------------------eEEEEECCC
Q 008058          162 -----------------------------------ISCMAVSSDGKMLATAAG------------------QLKTFNCSD  188 (579)
Q Consensus       162 -----------------------------------v~~l~~~p~g~~l~~~~g------------------~i~vwd~~~  188 (579)
                                                         ...++++++...++.+.+                  .|..+|.++
T Consensus       202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t  281 (571)
T 2ad6_A          202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT  281 (571)
T ss_dssp             TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred             ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence                                               023567776666665542                  599999999


Q ss_pred             CeeeEEeec--CC--------CCEEEEEEecCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          189 HKKMQKFSG--HP--------GAVRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       189 ~~~~~~~~~--h~--------~~v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |+.+..++.  |.        .++. +...++|+   .++.++ .+|.++++|..+++..
T Consensus       282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~~  339 (571)
T 2ad6_A          282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHID-RNGILYTLNRENGNLI  339 (571)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeC-CCcEEEEEECCCCCEE
Confidence            998877753  21        2221 23335774   445554 7899999999988754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.65  E-value=3e-05  Score=72.86  Aligned_cols=194  Identities=9%  Similarity=-0.062  Sum_probs=117.7

Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|+++.|..+. .++.|.+++..++.....+....                  .....+++.+..        +.+
T Consensus        40 gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~------------------~~p~~ia~d~~~--------~~l   93 (267)
T 1npe_A           40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL------------------GSPEGIALDHLG--------RTI   93 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC------------------CCEEEEEEETTT--------TEE
T ss_pred             EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC------------------CCccEEEEEecC--------CeE
Confidence            458898776666554 46789999987654332221100                  011233333321        333


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGSLLGKFR-ASTKGISC  164 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~-~~~~~v~~  164 (579)
                      .++-...+.|.++++...... .+..........++++|++..|+.+..   .+.|..+++. +.....+. ........
T Consensus        94 yv~d~~~~~I~~~~~~g~~~~-~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           94 FWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG  171 (267)
T ss_dssp             EEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred             EEEECCCCEEEEEEcCCCCEE-EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence            444445678999998754322 222222246799999997777666654   3688888875 43333332 23346789


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      ++++|++..|+.+.   +.|.++|.........+.+ ......+++.  +..++.+....+.|.++|..+++.
T Consensus       172 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          172 LTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCc
Confidence            99999887776665   7999999976544333333 2334566654  455666654678999999987763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=4e-06  Score=76.85  Aligned_cols=167  Identities=10%  Similarity=0.067  Sum_probs=108.8

Q ss_pred             EEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058          109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (579)
Q Consensus       109 ~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v  183 (579)
                      +.++......-..++.|+ ++..+.+++.+|  .|+.+|+.+++.+..+.... ......+.++++.+....   +.+.+
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v  111 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFV  111 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEE
Confidence            334422233445899998 676666777766  89999999999998876543 333333334455555554   89999


Q ss_pred             EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc---eeeEeEEecCCcc
Q 008058          184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGGV  260 (579)
Q Consensus       184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  260 (579)
                      ||..+.+.+.++.-..   ....++++++.|+.+. .++.|.++|..+.+...   ........   ..++-+.+.    
T Consensus       112 ~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---~I~V~~~g~~~~~lNELe~~----  180 (262)
T 3nol_A          112 WNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---TITVTAHGEELPELNELEWV----  180 (262)
T ss_dssp             EETTTCCEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---EEECEETTEECCCEEEEEEE----
T ss_pred             EECccCcEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---EEEeccCCccccccceeEEE----
Confidence            9999999999987432   2234456777777664 57889999998876542   12222111   222223442    


Q ss_pred             cCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          261 DDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        +|...+..-.++.|.+.|.++++.+..+
T Consensus       181 --~G~lyan~w~~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          181 --DGEIFANVWQTNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             --TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred             --CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence              5654444445889999999999876654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.53  E-value=4.5e-06  Score=76.48  Aligned_cols=168  Identities=11%  Similarity=0.059  Sum_probs=108.6

Q ss_pred             eEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEE
Q 008058          107 QLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKT  183 (579)
Q Consensus       107 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~v  183 (579)
                      +.+.++......-..++.|+ ++..+.+.+.+|.|+.+|+.+++.+..+ -.. ........++++.|+...   +.+.+
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V  120 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFT  120 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred             EEEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEE
Confidence            34444432333456889997 3556677778899999999999988887 333 333322333444555444   89999


Q ss_pred             EECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCce---eeEeEEecCCcc
Q 008058          184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAV---FMDCRCIDNGGV  260 (579)
Q Consensus       184 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  260 (579)
                      ||..+.+.+.++.....   ...++++++.|+.+. .++.|.++|..+.+...   .........   .+.-+.+.    
T Consensus       121 ~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~---~I~V~~~g~~v~~lNeLe~~----  189 (268)
T 3nok_A          121 WSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSD-GGTMLTFHEPDGFALVG---AVQVKLRGQPVELINELECA----  189 (268)
T ss_dssp             EETTTTEEEEEEECSSC---CCCEEEETTEEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEEE----
T ss_pred             EECCcCcEEEEEeCCCc---eeEEecCCCEEEEEC-CCCEEEEEcCCCCeEEE---EEEeCCCCcccccccccEEe----
Confidence            99999999999974322   233446788887775 68899999998877542   112212211   22333442    


Q ss_pred             cCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          261 DDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       261 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        +|...+..-.++.|.+.|.++++.+..+
T Consensus       190 --dG~lyanvw~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          190 --NGVIYANIWHSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             --TTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred             --CCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence              6654444445889999999999877654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00027  Score=68.11  Aligned_cols=231  Identities=7%  Similarity=-0.041  Sum_probs=132.2

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      +|+.+. ...|+..|+.+......+...                   .....+.|.+.+        +.++++-...+.|
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~-------------------~~p~g~~~d~~~--------~~ly~~D~~~~~I   54 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIPNL-------------------RNVVALDTEVAS--------NRIYWSDLSQRMI   54 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEECSC-------------------SSEEEEEEETTT--------TEEEEEETTTTEE
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhcCC-------------------CceEEEEEEeCC--------CEEEEEECCCCcE
Confidence            344444 346888898876654433211                   112345555432        3344444456789


Q ss_pred             EEEEccC---CeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEE
Q 008058           99 LALAVSA---GQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML  174 (579)
Q Consensus        99 ~iwd~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l  174 (579)
                      ..+++..   +.....+.........++++.+.+..|+.+ ...+.|.++|+........+.........++++|.+..+
T Consensus        55 ~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~l  134 (316)
T 1ijq_A           55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  134 (316)
T ss_dssp             EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEE
T ss_pred             EEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEE
Confidence            9999876   122222222222456889998766555544 567899999986443333333334577999999966555


Q ss_pred             EEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCcee
Q 008058          175 ATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF  249 (579)
Q Consensus       175 ~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  249 (579)
                      +.++    +.|..+++.. .....+ ...-.....++++|++..|+.+-...+.|..+|+......   .+.........
T Consensus       135 y~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~---~~~~~~~~~~~  210 (316)
T 1ijq_A          135 YWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAH  210 (316)
T ss_dssp             EEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSS
T ss_pred             EEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE---EEeecCCccCC
Confidence            4443    5788888753 333333 2234567899999987777776656789999998754322   22221111111


Q ss_pred             eEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          250 MDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      ...+++.      ++..+++-...+.|..++..+++.+
T Consensus       211 P~giav~------~~~ly~~d~~~~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          211 PFSLAVF------EDKVFWTDIINEAIFSANRLTGSDV  242 (316)
T ss_dssp             EEEEEEE------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             cEEEEEE------CCEEEEEECCCCeEEEEeCCCCcce
Confidence            2233332      3455555556789999987776543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.50  E-value=5.6e-05  Score=72.65  Aligned_cols=225  Identities=12%  Similarity=0.043  Sum_probs=122.9

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|+++|+++++-..++.|..||..+. ....+.. ..                  ....+++.+.         ++++
T Consensus        36 gia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~------------------~p~gia~~~d---------G~l~   86 (306)
T 2p4o_A           36 NLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EG------------------KVSGLAFTSN---------GDLV   86 (306)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SS------------------EEEEEEECTT---------SCEE
T ss_pred             eEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CC------------------CceeEEEcCC---------CcEE
Confidence            4589999986666667889999987653 3322221 11                  1223333321         5544


Q ss_pred             EEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eeEee---------c
Q 008058           90 VLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL-LGKFR---------A  157 (579)
Q Consensus        90 ~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~---------~  157 (579)
                      ++.....  .|..+|..+++...............++..+++..+++...++.|+.+|...++. +....         .
T Consensus        87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            4433322  4777787787754222112223345666666554444444688999999875531 11110         1


Q ss_pred             CCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          158 STKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .-...+.+  +|+++.|+.+.   +.|..|++.. ++.  ...+.. ......++++++|+++++.. ..+.|.+++.. 
T Consensus       167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-  241 (306)
T 2p4o_A          167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-  241 (306)
T ss_dssp             CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-
T ss_pred             CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeC-CCCeEEEECCC-
Confidence            11234555  78888777665   7999999874 322  222221 13456789999998765544 57889999875 


Q ss_pred             CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058          232 VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      ++..   .+.....+.....+++|...  .|++..|++++..
T Consensus       242 G~~~---~~~~~~~~~~~p~~~a~~g~--~~d~~~LyVt~~~  278 (306)
T 2p4o_A          242 RSTT---IIAQAEQGVIGSTAVAFGQT--EGDCTAIYVVTNG  278 (306)
T ss_dssp             CCEE---EEECGGGTCTTEEEEEECCS--TTTTTEEEEEECT
T ss_pred             CCEE---EEeecccccCCceEEEEecc--cCCCCEEEEECCC
Confidence            3321   11122222233455666310  0455666665543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.45  E-value=3.5e-05  Score=83.91  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=108.0

Q ss_pred             EEEEc-cCCCEEEEEeC-CC----cEEEEECCCC-eEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058           10 LTSFS-PALDYFAICSG-DA----RIKIWDTLKG-QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus        10 ~~~fs-~dg~~las~s~-dg----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ..+|| |||++||.+.. +|    +|+++|+.+| +.+.   .                 ........+.|.+.      
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~-----------------~~~~~~~~~~WspD------  231 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---D-----------------KVSGTNGEIVWGPD------  231 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---C-----------------CEEEECSCCEECSS------
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---c-----------------cccCceeeEEEecC------
Confidence            45899 99999996653 23    4999999988 5211   0                 00001234556554      


Q ss_pred             ccCCcEEEEEECC-----CeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeC---CCcEEEEeCCCCc-e
Q 008058           83 KLGSSLLVLGTGG-----GDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGA---DGMVCEIDPLTGS-L  151 (579)
Q Consensus        83 ~~~~~~l~~~~~~-----g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~-~  151 (579)
                         ++.|+....+     ..|+++++.++..  ...+...+.....++.|+|||++|+..+.   ...|+++|+.++. .
T Consensus       232 ---g~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~  308 (751)
T 2xe4_A          232 ---HTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH  308 (751)
T ss_dssp             ---TTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred             ---CCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence               4455555544     2588888877642  11221223345678899999999876653   3468889987752 2


Q ss_pred             e--eEe-ecCCCCeeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEE-eecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          152 L--GKF-RASTKGISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       152 ~--~~~-~~~~~~v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      .  ..+ ........++.|+.++.+++.+.      ..|..+|+.++..... +..|...+.--.+++.+.+|+.....+
T Consensus       309 ~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~  388 (751)
T 2xe4_A          309 NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA  388 (751)
T ss_dssp             CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred             ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence            2  333 32334556666554444444433      3788888865322222 333444333233444566666665567


Q ss_pred             Ce--EEEEEc
Q 008058          222 RY--IALWRT  229 (579)
Q Consensus       222 ~~--i~vwd~  229 (579)
                      +.  |.++++
T Consensus       389 g~~~l~~~dl  398 (751)
T 2xe4_A          389 GLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            75  455554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.44  E-value=2e-05  Score=71.60  Aligned_cols=168  Identities=10%  Similarity=0.006  Sum_probs=107.2

Q ss_pred             EEEEecCCCCCCEEEEEEccCCCEEEEEeCC--CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEE
Q 008058          108 LKWRLSDCHPGGVSAISFATHGSCIYSAGAD--GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLK  182 (579)
Q Consensus       108 ~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~  182 (579)
                      .+.++......-..++.|++ +..+.+.+.+  ..|+.+|+.+++.+..+..... +......+.++.|....   +.+.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEE
Confidence            34444222335577999986 5555566655  4899999999999988764433 23333333455555554   8999


Q ss_pred             EEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCc---eeeEeEEecCCc
Q 008058          183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPA---VFMDCRCIDNGG  259 (579)
Q Consensus       183 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  259 (579)
                      +||..+.+.+.+++....   ...+++++..|+.+- .++.|.++|..+.+...   ........   ..+.-+.+    
T Consensus        89 v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-gs~~l~~iDp~t~~~~~---~I~V~~~g~~~~~lNeLe~----  157 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-GTAVIRKLDPDTLQQVG---SIKVTAGGRPLDNLNELEW----  157 (243)
T ss_dssp             EEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-SSSEEEEECTTTCCEEE---EEECEETTEECCCEEEEEE----
T ss_pred             EEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-CCCeEEEEeCCCCeEEE---EEEEccCCcccccceeeEE----
Confidence            999999999999974332   234446777777665 68899999999876542   12222121   12223333    


Q ss_pred             ccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          260 VDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       260 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        .+|...+..-.+..|.+.|.++++.+..+
T Consensus       158 --~~G~lyanvw~s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          158 --VNGELLANVWLTSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             --ETTEEEEEETTTTEEEEECTTTCBEEEEE
T ss_pred             --eCCEEEEEECCCCeEEEEECCCCCEEEEE
Confidence              25664444446789999999999876544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.42  E-value=8.5e-05  Score=78.05  Aligned_cols=198  Identities=12%  Similarity=0.129  Sum_probs=117.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +..++.++.++.|.-+|..+|+.+..+...........+      .....  ....+            +..+++++.++
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~------~~~~~--g~a~~------------~~~v~~~t~dg  127 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCC------DVVNR--GAAIY------------GDKVFFGTLDA  127 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSS------CSCCC--CCEEE------------TTEEEEEETTT
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCccccccc------ccCCC--ccEEE------------CCEEEEEeCCC
Confidence            345556665445899999999999887643221110000      00000  00011            56788999999


Q ss_pred             eEEEEEccCCeEEEEecCCC-C--CCEE-EEEEcc---CCC-EEEEEe------CCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           97 DVLALAVSAGQLKWRLSDCH-P--GGVS-AISFAT---HGS-CIYSAG------ADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h-~--~~V~-~l~~~~---~~~-~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      .|..+|..+|+.+++..... .  ..+. ...+..   +|+ .++.++      .++.|+.+|..+|+.+.........+
T Consensus       128 ~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~  207 (582)
T 1flg_A          128 SVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM  207 (582)
T ss_dssp             EEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE
T ss_pred             EEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccc
Confidence            99999999999987764321 0  0111 111111   233 566654      37899999999999877654321000


Q ss_pred             -----------------------------------------eEEEEccCCCEEEEEC-----------------------
Q 008058          163 -----------------------------------------SCMAVSSDGKMLATAA-----------------------  178 (579)
Q Consensus       163 -----------------------------------------~~l~~~p~g~~l~~~~-----------------------  178 (579)
                                                               ..++++|+..+++.+.                       
T Consensus       208 ~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~  287 (582)
T 1flg_A          208 GRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDS  287 (582)
T ss_dssp             EEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCC
T ss_pred             ccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCC
Confidence                                                     1356667666666443                       


Q ss_pred             ---CeEEEEECCCCeeeEEeec--CCC----CEEE-EEEe---cCCC---EEEEEecCCCeEEEEEcCCCccc
Q 008058          179 ---GQLKTFNCSDHKKMQKFSG--HPG----AVRF-MTFS---DNGK---YVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       179 ---g~i~vwd~~~~~~~~~~~~--h~~----~v~~-l~~~---~~~~---~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                         +.|..+|.++|+.+-.++.  |..    .+.. +.+.   .+|+   .++.++ .+|.++++|..+++..
T Consensus       288 ~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  359 (582)
T 1flg_A          288 LYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVDRSNGKLQ  359 (582)
T ss_dssp             TTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             cccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEECCCCCEe
Confidence               4799999999999877753  321    1111 2222   4664   555555 7999999999988754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.41  E-value=3.4e-05  Score=80.96  Aligned_cols=203  Identities=10%  Similarity=0.066  Sum_probs=121.4

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC
Q 008058           17 LDYFAICSG-DARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG   94 (579)
Q Consensus        17 g~~las~s~-dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~   94 (579)
                      +..++.++. ++.|.-+|. .+|+.+..+..............    ..   ....+...+.+..     ....+++++.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~----~~---~~~g~av~p~~g~-----~~~rV~v~t~  129 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACC----DL---VNRGLAYWPGDGK-----TPALILKTQL  129 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSS----CS---CCCCCEEECCCSS-----SCCEEEEECT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccc----cc---cccceEEEecCCc-----ceeEEEEEcC
Confidence            446667777 899999999 99999988764322110000000    00   0000111010000     0234888999


Q ss_pred             CCeEEEEEccCCeEEEEecCCCC---CCEEE-EEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCCCC---
Q 008058           95 GGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRASTKG---  161 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h~---~~V~~-l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~---  161 (579)
                      ++.+..+|..+|+.+++......   ..+.+ ..+ .++ .++.++      .+|.|+.+|..+|+.+..+......   
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~  207 (599)
T 1w6s_A          130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDL  207 (599)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred             CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccc
Confidence            99999999999999877642210   01111 111 144 455554      3899999999999988776643211   


Q ss_pred             ----------------------------------e-eEEEEccCCCEEEEEC--C----------------eEEEEECCC
Q 008058          162 ----------------------------------I-SCMAVSSDGKMLATAA--G----------------QLKTFNCSD  188 (579)
Q Consensus       162 ----------------------------------v-~~l~~~p~g~~l~~~~--g----------------~i~vwd~~~  188 (579)
                                                        + ..+++.++..+++.+.  +                .|..+|.++
T Consensus       208 ~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~T  287 (599)
T 1w6s_A          208 LLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADT  287 (599)
T ss_dssp             TBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCC
Confidence                                              0 1356667777777765  2                799999999


Q ss_pred             CeeeEEeecCC----------CCEEEEEEe-cCC---CEEEEEecCCCeEEEEEcCCCccc
Q 008058          189 HKKMQKFSGHP----------GAVRFMTFS-DNG---KYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       189 ~~~~~~~~~h~----------~~v~~l~~~-~~~---~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      |+.+-.++...          .++. +... .+|   +.++.++ .+|.++++|..+++..
T Consensus       288 G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          288 GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGALV  346 (599)
T ss_dssp             CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC-CCcEEEEEECCCCCEe
Confidence            99887775322          1221 2222 467   3455554 7999999999988754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00016  Score=69.96  Aligned_cols=186  Identities=14%  Similarity=0.109  Sum_probs=115.5

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe-cC---------C--------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SD---------C--------HPGGVSAISFATHGSCIYSAGADGMVCEIDPL  147 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~---------~--------h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~  147 (579)
                      +.+++++..++.|..|+..++....-. ..         +        ....+.++++.+++..|+.+...+.|..+|..
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~  109 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSE  109 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCC
Confidence            566788888999999998876543111 00         0        11357899999833456666555668899976


Q ss_pred             CCceeeEeec-----CCCCeeEEEEcc-CCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCE
Q 008058          148 TGSLLGKFRA-----STKGISCMAVSS-DGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAV  202 (579)
Q Consensus       148 ~~~~~~~~~~-----~~~~v~~l~~~p-~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v  202 (579)
                      ++.. ..+..     .......+++.| +|++.++..                   +.|..||..+++......+ ....
T Consensus       110 ~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p  187 (322)
T 2fp8_A          110 GGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVP  187 (322)
T ss_dssp             CEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCC
T ss_pred             CCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccC
Confidence            5532 22221     113578899999 998777642                   4688899877764332222 2335


Q ss_pred             EEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc----------
Q 008058          203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE----------  272 (579)
Q Consensus       203 ~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----------  272 (579)
                      ..++|+|++++|+.+....+.|.+|++.............  ...  ...++++     ++|.+.++...          
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g--P~gi~~d-----~~G~l~va~~~~~~~~~~~~~  258 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN--PGNIKRN-----ADGHFWVSSSEELDGNMHGRV  258 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS--EEEEEEC-----TTSCEEEEEEEETTSSTTSCE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC--CCCeEEC-----CCCCEEEEecCcccccccCCC
Confidence            6799999998776665457899999987643211111111  122  4556666     78876666544          


Q ss_pred             CCeEEEEECC
Q 008058          273 TGVCYIWYGQ  282 (579)
Q Consensus       273 dg~i~iwd~~  282 (579)
                      .+.|..+|.+
T Consensus       259 ~~~v~~~d~~  268 (322)
T 2fp8_A          259 DPKGIKFDEF  268 (322)
T ss_dssp             EEEEEEECTT
T ss_pred             ccEEEEECCC
Confidence            3567777653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.32  E-value=0.00048  Score=68.45  Aligned_cols=199  Identities=6%  Similarity=-0.084  Sum_probs=119.6

Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPL  147 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~  147 (579)
                      ..++|.+.+        +.++++-...+.|..+++..+.....+ ........++++.+.+..|+.+ ...+.|.+.++.
T Consensus       119 ~gl~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          119 IALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             EEEEEETTT--------TEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred             EEEEEecCC--------CeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence            356666542        344444456677999998876543333 2223345788998866665544 456788888876


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                      .......+...-.....++++|.+..|+.+.    +.|..+++............-.....|+|+|++..|+.+-...+.
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~  269 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  269 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE
Confidence            4433333333335779999999776666554    578888876543332233334557899999877777776656788


Q ss_pred             EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      |..+++......   .+.. ...... ..+++.      ++..+++-...+.|..++..+++.+
T Consensus       270 I~~~d~dG~~~~---~~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          270 IERANLDGSHRK---AVIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEECTTSCSCE---EEEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEeCCCCeeE---EEEE-CCCCCc-eEEEEE------CCEEEEeeCCCCeEEEEECCCCcce
Confidence            999998754322   1111 111122 223332      3455555556778888886666544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.32  E-value=0.001  Score=66.38  Aligned_cols=192  Identities=8%  Similarity=-0.060  Sum_probs=115.0

Q ss_pred             cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      .+..+-...+.|+.+++....   ....+.........++++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus       125 ~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P  204 (400)
T 3p5b_L          125 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP  204 (400)
T ss_dssp             EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCE
T ss_pred             ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCc
Confidence            333444456778888886521   1112223344568899999855555544 567889999986554433344344468


Q ss_pred             eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ..|+++|.+..|+.+.    +.|...++........+...-.....|++++++..|+.+-...+.|..+|+......   
T Consensus       205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---  281 (400)
T 3p5b_L          205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---  281 (400)
T ss_dssp             EEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCE---
T ss_pred             ceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccE---
Confidence            9999999665555543    578888886543333333334567899999988877777656788999998764422   


Q ss_pred             eEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+.... ..........+       .+..+++-...+.|..+|..+++.+.
T Consensus       282 ~~~~~~~~l~~P~gl~v~-------~~~lywtd~~~~~V~~~~~~~G~~~~  325 (400)
T 3p5b_L          282 TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDVN  325 (400)
T ss_dssp             EEEECSSTTSSEEEEEEE-------TTEEEEEESSSCSEEEEESSSCCCCE
T ss_pred             EEEeCCCCCCCCEEEEEe-------CCEEEEecCCCCeEEEEEcCCCCceE
Confidence            222211 11222222222       33455555567889999977776543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.26  E-value=0.0017  Score=63.34  Aligned_cols=198  Identities=6%  Similarity=-0.078  Sum_probs=117.6

Q ss_pred             ceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCC
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPL  147 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~  147 (579)
                      ..++|.+.+        +.++++-...+.|..+++..+...... ........++++.+.+..|+.+ ...+.|.+.++.
T Consensus        76 ~~l~~d~~~--------~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  146 (349)
T 3v64_C           76 IALDFHHRR--------ELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  146 (349)
T ss_dssp             EEEEEETTT--------TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEEeccc--------cEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC
Confidence            356666542        334444445677999998876543222 2223456789998866555544 456789999986


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCC
Q 008058          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~  222 (579)
                      .......+...-.....++++|.+..|+.+.    +.|..+++.... ...+ ...-.....++++|++..|+.+-...+
T Consensus       147 G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~  225 (349)
T 3v64_C          147 GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  225 (349)
T ss_dssp             SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence            4433323333335679999999666655554    568888876432 2333 223445789999987777777665678


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      .|..+++......   .+.. ...... ..+++.      ++...++-...+.|..++..+++.+
T Consensus       226 ~I~~~~~dG~~~~---~~~~-~~~~~P-~giav~------~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          226 VIERANLDGSHRK---AVIS-QGLPHP-FAITVF------EDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             EEEEEETTSCSCE---EEEC-SSCSSE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEEeCCCCceE---EEEe-CCCCCc-eEEEEE------CCEEEEecCCCCeEEEEEccCCCcc
Confidence            8999998764322   1111 111112 223332      3444455555778888886666543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.23  E-value=0.0015  Score=71.63  Aligned_cols=245  Identities=9%  Similarity=0.142  Sum_probs=146.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .++..+++|+ |-.|+.++-|..|+..++.... +..... .          .+-....+.++....        
T Consensus       310 ~~i--~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~-~----------~~l~~~~V~~i~~d~--------  366 (795)
T 4a2l_A          310 RSV--RSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPY-K----------NSLSDNVVSCIVEDK--------  366 (795)
T ss_dssp             SCE--EEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTT-S----------SSCSCSSEEEEEECT--------
T ss_pred             CcE--EEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCC-C----------CCCCCCeeEEEEECC--------
Confidence            346  3447788886 4456666668888866554322 211000 0          000111233333222        


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecC-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSD-------CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                        ...|.+|+.++-|..|+..++....-...       -....|.++...++|+.|..|+.++-+..||..+++... +.
T Consensus       367 --~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~  443 (795)
T 4a2l_A          367 --DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FN  443 (795)
T ss_dssp             --TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-EC
T ss_pred             --CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-ee
Confidence              33477899988899999988765422211       123579999998888757777777779999988776433 32


Q ss_pred             c-----CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          157 A-----STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       157 ~-----~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      .     ....|.++...++|++.+...+-+.+||..+++.......      +...|.++...++|+..+.+  .+ -+.
T Consensus       444 ~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt--~~-Gl~  520 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG--EE-GLS  520 (795)
T ss_dssp             TTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE--SS-CEE
T ss_pred             cCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe--CC-ceE
Confidence            1     2457999999999987776666789999887754322111      23568999999999866544  34 488


Q ss_pred             EEEcCCCccccceeE-EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          226 LWRTDGVKKQSASCV-LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       226 vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .|+..+++. ..... .....+...+.++..+     ++|...+ ++.. -+..||.++.+
T Consensus       521 ~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-----~~g~lWi-gT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          521 VFKQEGLDI-QKASILPVSNVTKLFTNCIYEA-----SNGIIWV-GTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             EEEEETTEE-EECCCSCSCGGGGSCEEEEEEC-----TTSCEEE-EESS-CEEEEETTTTE
T ss_pred             EEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-----CCCCEEE-EeCC-CceeECCCCCc
Confidence            888766542 00000 0001122345555554     6666444 4444 68888877654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.23  E-value=0.00056  Score=65.86  Aligned_cols=198  Identities=7%  Similarity=-0.067  Sum_probs=117.4

Q ss_pred             eEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q 008058           70 CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLT  148 (579)
Q Consensus        70 ~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~  148 (579)
                      .+.|.+.+        +.+..+-...+.|..+++..+.....+.........++++.+.+..|+.+ ...+.|.++++..
T Consensus        39 ~ld~d~~~--------~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           39 AVDFVFSH--------GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEGGG--------TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEEEeCC--------CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence            56666543        34444445567799999876632111111122456789998755555544 4677899999864


Q ss_pred             CceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          149 GSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       149 ~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                      ......+.........++++|.+..|+.+.    +.|..+++.... ...+ ...-...+.|+++|++..|+.+-...+.
T Consensus       111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~  189 (318)
T 3sov_A          111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF  189 (318)
T ss_dssp             CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCE
Confidence            332222333445779999998655555443    578888876432 2233 2333456899999977777776656789


Q ss_pred             EEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          224 IALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       224 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      |..+++......   .+.. ...... ..+++.      .+..+.+-...+.|..++..+++..
T Consensus       190 I~~~d~dG~~~~---~~~~-~~~~~P-~glav~------~~~lywtd~~~~~V~~~~~~~G~~~  242 (318)
T 3sov_A          190 IHKSNLDGTNRQ---AVVK-GSLPHP-FALTLF------EDILYWTDWSTHSILACNKYTGEGL  242 (318)
T ss_dssp             EEEEETTSCSCE---EEEC-SCCSCE-EEEEEE------TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEEcCCCCceE---EEec-CCCCCc-eEEEEe------CCEEEEEecCCCeEEEEECCCCCce
Confidence            999998754322   1111 111222 223332      2344555555788999998777654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.22  E-value=0.00089  Score=61.63  Aligned_cols=196  Identities=13%  Similarity=0.132  Sum_probs=127.1

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDP  146 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~  146 (579)
                      ....++|.+..        +.+.++...++.|...|.. ++.+.++..+-....-++++.+++.++++.-.++.+.++++
T Consensus        28 ~lSGla~~~~~--------~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           28 NISSLTWSAQS--------NTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             CEEEEEEETTT--------TEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             CcceeEEeCCC--------CEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            45567777543        5566778888889999998 77776663333356889999998877676657788999987


Q ss_pred             CCCce---eeEee------cCCCCeeEEEEccCCCEEEEEC--C--eEEEEECC-CCeeeEEee-------cCCCCEEEE
Q 008058          147 LTGSL---LGKFR------ASTKGISCMAVSSDGKMLATAA--G--QLKTFNCS-DHKKMQKFS-------GHPGAVRFM  205 (579)
Q Consensus       147 ~~~~~---~~~~~------~~~~~v~~l~~~p~g~~l~~~~--g--~i~vwd~~-~~~~~~~~~-------~h~~~v~~l  205 (579)
                      .....   +....      ..+.....++|+|+++.|+++.  .  .|+.|+-. ....+..+.       .+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   22221      1233678999999997777766  3  45555510 111122221       133457899


Q ss_pred             EEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-------ceeeEeEEecCCcccCCCcEEEEEEcCCeEEE
Q 008058          206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-------AVFMDCRCIDNGGVDDAGLYVLAISETGVCYI  278 (579)
Q Consensus       206 ~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i  278 (579)
                      +++|....++..+..++.+.++|.... ..   ....+...       -.....+++.     ++|+ |...++-+.+++
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~---~~~~L~~g~~~l~~~~~qpEGia~d-----~~G~-lyIvsE~n~~y~  248 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VI---GEMSLTKGSRGLSHNIKQAEGVAMD-----ASGN-IYIVSEPNRFYR  248 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EE---EEEECSTTGGGCSSCCCSEEEEEEC-----TTCC-EEEEETTTEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EE---EEEEcCCccCCcccccCCCCeeEEC-----CCCC-EEEEcCCceEEE
Confidence            999987777777778889999997754 22   22233211       1234567777     8887 555588788888


Q ss_pred             EEC
Q 008058          279 WYG  281 (579)
Q Consensus       279 wd~  281 (579)
                      |.-
T Consensus       249 f~~  251 (255)
T 3qqz_A          249 FTP  251 (255)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            754

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.21  E-value=9.6e-05  Score=79.26  Aligned_cols=243  Identities=9%  Similarity=0.029  Sum_probs=127.3

Q ss_pred             ceEEEEcc-CCCEEEEEeCCC-----------cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeee
Q 008058            8 DILTSFSP-ALDYFAICSGDA-----------RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLS   75 (579)
Q Consensus         8 ~~~~~fs~-dg~~las~s~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~   75 (579)
                      ...+++.| +|+.++.|+.++           .+.+||..+++....-...               ......+...+...
T Consensus       188 ~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------------~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          188 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------------TKHDMFCPGISMDG  252 (656)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------------CSCCCSSCEEEECT
T ss_pred             ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------------CCCCCccccccCCC
Confidence            34567787 888888887543           5778888776532110000               00000011111111


Q ss_pred             cccccccccCCcEEEEEEC-CCeEEEEEccCCeEEEEecCCCCCC-EEEEEEccCCCEEEEEe-CC-----CcEEEEeCC
Q 008058           76 VDRKKKRKLGSSLLVLGTG-GGDVLALAVSAGQLKWRLSDCHPGG-VSAISFATHGSCIYSAG-AD-----GMVCEIDPL  147 (579)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~~-~d-----g~v~iwd~~  147 (579)
                               ++.++++|+. +.++.+||+.+++....- ..+... -.++++.++|+.++.|+ .+     ..+.+||..
T Consensus       253 ---------~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          253 ---------NGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             ---------TSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ---------CCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence                     1667777774 457999999988764221 112222 13455667899988888 34     569999998


Q ss_pred             CCceeeEe----ecCCCCeeEEEEccCCCEEEEE----------C-CeEEEEECCCCeeeEEeecCCC---------CEE
Q 008058          148 TGSLLGKF----RASTKGISCMAVSSDGKMLATA----------A-GQLKTFNCSDHKKMQKFSGHPG---------AVR  203 (579)
Q Consensus       148 ~~~~~~~~----~~~~~~v~~l~~~p~g~~l~~~----------~-g~i~vwd~~~~~~~~~~~~h~~---------~v~  203 (579)
                      +++-...-    ......-....+..++..++.|          . ..+..||..+.........+..         .-.
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~  402 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN  402 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence            76532210    0000000001112334444443          2 5688999887764433322211         223


Q ss_pred             EEEEec-CCCEEEEEecCCC-----------eEEEEEcCCCccccceeEE--eeecCceeeEeEEecCCcccCCCcEEEE
Q 008058          204 FMTFSD-NGKYVLSSAVGER-----------YIALWRTDGVKKQSASCVL--AMEHPAVFMDCRCIDNGGVDDAGLYVLA  269 (579)
Q Consensus       204 ~l~~~~-~~~~l~s~s~~d~-----------~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s  269 (579)
                      ++.|.. +++.++.+|. ++           .+.+||..+..-.   .+.  .+........++..      |+++.++.
T Consensus       403 av~~~~~~~~i~v~GG~-~~~~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~mp~~R~~~~~~~l------~~g~i~v~  472 (656)
T 1k3i_A          403 AVMYDAVKGKILTFGGS-PDYQDSDATTNAHIITLGEPGTSPNT---VFASNGLYFARTFHTSVVL------PDGSTFIT  472 (656)
T ss_dssp             EEEEETTTTEEEEECCB-SSSSSSBCCCCEEEEECCSTTSCCEE---EECTTCCSSCCBSCEEEEC------TTSCEEEE
T ss_pred             eEeccCCCCeEEEEeCC-CCCCCCCcCCcceEEEcCCCCCCCee---EEccCCCCCCcccCCeEEC------CCCCEEEE
Confidence            445543 6666666653 22           5777777665422   111  11222112222322      78999999


Q ss_pred             EEcC-----------CeEEEEECCCce
Q 008058          270 ISET-----------GVCYIWYGQNIE  285 (579)
Q Consensus       270 ~~~d-----------g~i~iwd~~~~~  285 (579)
                      |+.+           ..+.+||..+.+
T Consensus       473 GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          473 GGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CCcccCcCcCCCCcccceEEEcCCCCc
Confidence            8864           467888876643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.13  E-value=0.0017  Score=62.07  Aligned_cols=183  Identities=13%  Similarity=0.098  Sum_probs=109.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C-cEEEEeCCCCceeeEeec-CCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G-MVCEIDPLTGSLLGKFRA-STKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g-~v~iwd~~~~~~~~~~~~-~~~~v  162 (579)
                      +.++++-..++.|..||...+... ...  ....+.++++.++|+.+++.... + .|..+|..+++....... .....
T Consensus        43 g~lyv~d~~~~~I~~~d~~g~~~~-~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  119 (306)
T 2p4o_A           43 GTIFVTNHEVGEIVSITPDGNQQI-HAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  119 (306)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE-EEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCeEEEECCCCceEE-EEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence            555555557888999998764332 221  23468999999999865554332 2 477788777765433221 12234


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCee-eEEee---------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKK-MQKFS---------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~-~~~~~---------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      ..++..+++..+++..  +.|+.+|..+++. +....         +.-.....+  +|++++|+.+....+.|..|++.
T Consensus       120 ~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~  197 (306)
T 2p4o_A          120 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVD  197 (306)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBC
T ss_pred             CcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeC
Confidence            5566666665555553  8999999876531 21111         111234555  88888777776678899999987


Q ss_pred             C-CccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          231 G-VKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      . ++..........    .....++++     ++|++.++....+.|.+|+..
T Consensus       198 ~~g~~~~~~~~~~~----~~P~gi~vd-----~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          198 STDKPGEPEIFVEQ----TNIDDFAFD-----VEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTSCBCCCEEEEES----CCCSSEEEB-----TTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCCCccEEEecc----CCCCCeEEC-----CCCCEEEEeCCCCeEEEECCC
Confidence            5 322111111111    123445555     788776666667788888754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.12  E-value=0.0028  Score=69.62  Aligned_cols=239  Identities=12%  Similarity=0.049  Sum_probs=142.7

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++..+++|+ |-.|+.++-|..|+..++....-.........          +-....+.++...+.         +..
T Consensus       360 ~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~v~~i~~d~~---------g~~  419 (795)
T 4a2l_A          360 SCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESAR----------GIGSNNIKAVYVDEK---------KSL  419 (795)
T ss_dssp             EEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC----------------CCSCSCEEEEEEETT---------TTE
T ss_pred             EEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCccc----------CCCCccEEEEEEcCC---------CCE
Confidence            4447788886 44577776789999887765432211000000          000112223332211         444


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec------CC
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA------ST  159 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~------~~  159 (579)
                      |.+|+.++-|..||..+++...-...   .....|.++...++|+..+ |+.+ -+..||..+++.......      ..
T Consensus       420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCC
Confidence            78889888899999998875422210   1345799999988887544 4454 488999877654322111      23


Q ss_pred             CCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          160 KGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ..|.++...++|.+.+...+-+..||..+++.  .+.       .....|.++...++|...+++  .. -+..||..+.
T Consensus       498 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~-Gl~~~d~~~~  572 (795)
T 4a2l_A          498 KQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT--RE-GFYCFNEKDK  572 (795)
T ss_dssp             CCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred             ceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe--CC-CceeECCCCC
Confidence            57899999999987776667788999877765  332       123568899999999866554  24 4888998765


Q ss_pred             ccccceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          233 KKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      +..    .+...  -+...+..+..+     ++|...+++  ++-|..|+.++.+
T Consensus       573 ~~~----~~~~~~gl~~~~i~~i~~d-----~~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          573 QIK----RYNTTNGLPNNVVYGILED-----SFGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             EEE----EECGGGTCSCSCEEEEEEC-----TTSCEEEEE--TTEEEEEETTTTE
T ss_pred             cEE----EeCCCCCCchhheEEEEEC-----CCCCEEEEc--CCceEEEcCCCCc
Confidence            422    11111  122334445554     566654444  3567788877654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.11  E-value=0.0017  Score=64.52  Aligned_cols=196  Identities=11%  Similarity=-0.040  Sum_probs=113.5

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..++|++.+..|.... ..+.|..++..++.....+.......                  ..++..+..        +.
T Consensus       119 ~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p------------------~glavd~~~--------g~  172 (386)
T 3v65_B          119 IALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP------------------GGLAVDWVH--------DK  172 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC------------------CCEEEETTT--------TE
T ss_pred             EEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc------------------cEEEEEeCC--------Ce
Confidence            3458887665555444 46778888877654333222111011                  112222211        33


Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCeeE
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGISC  164 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v~~  164 (579)
                      +.++-...+.|.+.++...... .+.........++++.|.+..|+.+. .. +.|..+++. |.....+ ...-...+.
T Consensus       173 lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~PnG  250 (386)
T 3v65_B          173 LYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNG  250 (386)
T ss_dssp             EEEEETTTTEEEECBTTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred             EEEEcCCCCeEEEEeCCCCceE-EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCeee
Confidence            4444445567888877654432 22233345679999999777766654 33 678888875 3333333 223346789


Q ss_pred             EEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          165 MAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      |+++|++..|+.+.   +.|..+|+........+.........|++. .+ .++.+....+.|..++..+++.
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCCS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEeeCCCCeEEEEECCCCcc
Confidence            99998777777665   789999987543333333334556788883 34 3444444678888888656543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0032  Score=60.47  Aligned_cols=180  Identities=12%  Similarity=0.054  Sum_probs=111.5

Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCC---CceeeE-eecCCCCeeEEE
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLT---GSLLGK-FRASTKGISCMA  166 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~---~~~~~~-~~~~~~~v~~l~  166 (579)
                      -+....|+..|+.+++....+ . ....+.+++|+++++.|+.+. .++.|+.+++..   +..... +...-.....++
T Consensus         6 ~~~~~~I~~i~~~~~~~~~~~-~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla   83 (316)
T 1ijq_A            6 FTNRHEVRKMTLDRSEYTSLI-P-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA   83 (316)
T ss_dssp             EECBSSEEEEETTSCCCEEEE-C-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred             EECCCeEEEEECCCcceEehh-c-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence            344467899999887655333 2 345689999998766665554 568999999875   122222 322234568899


Q ss_pred             EccCCCEEEEE-C--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeEEe
Q 008058          167 VSSDGKMLATA-A--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       167 ~~p~g~~l~~~-~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +++.+..|+.+ .  +.|.+++.........+.........++++|.+..++.+.... +.|...++......    .. 
T Consensus        84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----~~-  158 (316)
T 1ijq_A           84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----SL-  158 (316)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----EE-
T ss_pred             EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----EE-
Confidence            99755555544 3  7999999875433323333345678999999777666654333 67888887654321    11 


Q ss_pred             eecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCC
Q 008058          243 MEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  283 (579)
                      ....-.....++++     +++..|..+. ..+.|..+|.+.
T Consensus       159 ~~~~~~~P~gla~d-----~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          159 VTENIQWPNGITLD-----LLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             ECSSCSCEEEEEEE-----TTTTEEEEEETTTTEEEEEETTS
T ss_pred             EECCCCCceEEEEe-----ccCCEEEEEECCCCeEEEEecCC
Confidence            11222344566676     7766666665 467899999764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.11  E-value=0.0021  Score=62.71  Aligned_cols=144  Identities=11%  Similarity=-0.035  Sum_probs=89.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CC-CcEEEEeCCCCceeeEe-ecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-AD-GMVCEIDPLTGSLLGKF-RASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~d-g~v~iwd~~~~~~~~~~-~~~~~~v  162 (579)
                      +.+.++-...+.|.+.++...... .+.........+++++|.+..|+.+. .. +.|..+++. |.....+ ...-...
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~~P  205 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRK-VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWP  205 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESCCSSCSCE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceE-EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCCCc
Confidence            334444445677888888754432 22223345679999999766666554 34 788888875 4333333 2233467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +.|+++|++..|+.+.   +.|..+|+........+.........+++. .+ .++.+....+.|..++..+++
T Consensus       206 nGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred             ceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCCCeEEEEEccCCC
Confidence            8999999777777665   789999987543333333334556778883 44 444444467788888865554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.00082  Score=67.74  Aligned_cols=148  Identities=13%  Similarity=0.122  Sum_probs=85.9

Q ss_pred             EEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++++| ++..|..+...+.|+.+|..++....... ...                  ....++|.+.         ++.
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~------------------~P~~ia~d~~---------G~~  192 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLS------------------KVRTICWTHE---------ADS  192 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCS------------------CEEEEEECTT---------SSE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCC------------------CcceEEEeCC---------CCE
Confidence            458998 45556666555789999988766544332 111                  1123344332         554


Q ss_pred             EEEEECC-C----eEEEEEccCCeE-EEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008058           89 LVLGTGG-G----DVLALAVSAGQL-KWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK  160 (579)
Q Consensus        89 l~~~~~~-g----~i~iwd~~~~~~-~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~  160 (579)
                      |+++... +    .+..++....-. ...+.  ......+++++| +|..+++-..++.|+.+|...+.....+.. ...
T Consensus       193 lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          193 MIITNDQNNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EEEEeCCCCcccceEEEEeCCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            5555542 2    244444332211 01111  123457788999 666555555778999999876654222222 223


Q ss_pred             CeeEEEEccCCCEEEEEC---CeEEEEECC
Q 008058          161 GISCMAVSSDGKMLATAA---GQLKTFNCS  187 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---g~i~vwd~~  187 (579)
                      ....++|+|+|++|+.+.   +.|..++..
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            578999999999666654   789998765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.01  E-value=0.0035  Score=57.68  Aligned_cols=189  Identities=7%  Similarity=0.056  Sum_probs=113.0

Q ss_pred             EEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ++|+|+++.|+ +...++.|...|.. ++.+..+.-.               +.  .....+++...         +.++
T Consensus        32 la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~---------------g~--~D~EGIa~~~~---------g~~~   84 (255)
T 3qqz_A           32 LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD---------------FV--KDLETIEYIGD---------NQFV   84 (255)
T ss_dssp             EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS---------------SC--SSEEEEEECST---------TEEE
T ss_pred             eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC---------------CC--CChHHeEEeCC---------CEEE
Confidence            49999876555 46678889999987 8877766421               10  12233444321         4444


Q ss_pred             EEEECCCeEEEEEccCCeE---EEEec-----CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CCceeeEee--
Q 008058           90 VLGTGGGDVLALAVSAGQL---KWRLS-----DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL---TGSLLGKFR--  156 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~---~~~~~-----~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~--  156 (579)
                      ++.-.++.+.++++.....   +....     .......-+++|+|+++.|+++.......+|.+.   ....+..+.  
T Consensus        85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~  164 (255)
T 3qqz_A           85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDK  164 (255)
T ss_dssp             EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECH
T ss_pred             EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecch
Confidence            4444567788888765432   11111     1234567999999999888877765544454442   111222221  


Q ss_pred             -----cCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCC---------CCEEEEEEecCCCEEEEEec
Q 008058          157 -----ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHP---------GAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       157 -----~~~~~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~l~s~s~  219 (579)
                           .+...+.+++++|.... ++...  +.+.++|.+ ++.+..+.-..         ...-.|+|.++|+.+++ + 
T Consensus       165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s-  241 (255)
T 3qqz_A          165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S-  241 (255)
T ss_dssp             HHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E-
T ss_pred             hhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c-
Confidence                 12236789999996544 44444  789999965 55554443211         25678999999985554 5 


Q ss_pred             CCCeEEEEEc
Q 008058          220 GERYIALWRT  229 (579)
Q Consensus       220 ~d~~i~vwd~  229 (579)
                      +-+.++.+.-
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            5666666643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0067  Score=58.01  Aligned_cols=204  Identities=13%  Similarity=0.194  Sum_probs=118.9

Q ss_pred             ceEEeee-cccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccC----CC---EEEEEe-C--
Q 008058           69 TCMKWLS-VDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATH----GS---CIYSAG-A--  137 (579)
Q Consensus        69 ~~~~w~~-~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~----~~---~l~s~~-~--  137 (579)
                      ....|.. .++.      ..+++.....+-+.+||+ +|+.+..+..   +.++.+..-|+    |+   ++++.. .  
T Consensus        28 dpavw~~~~dp~------~s~ii~t~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~   97 (355)
T 3amr_A           28 DPAIWLDPKTPQ------NSKLITTNKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEG   97 (355)
T ss_dssp             EEEEECCSSCGG------GCEEEEEETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred             CccEecCCCCCC------ccEEEEEcCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence            3467774 3443      455666667788999999 7887766632   56777776662    22   223333 3  


Q ss_pred             CCcEEEEeC--CCCceeeEeec------CC-CCeeEEEE--ccC-CC-EEEEEC--CeEEEEECC-------CCeeeEEe
Q 008058          138 DGMVCEIDP--LTGSLLGKFRA------ST-KGISCMAV--SSD-GK-MLATAA--GQLKTFNCS-------DHKKMQKF  195 (579)
Q Consensus       138 dg~v~iwd~--~~~~~~~~~~~------~~-~~v~~l~~--~p~-g~-~l~~~~--g~i~vwd~~-------~~~~~~~~  195 (579)
                      +++|.+|++  .++. +..+..      .. ..+..+|+  +|. ++ ++++..  |.+..|++.       +.+.+++|
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            578999966  3443 444421      11 45677787  774 54 344444  888888872       34667887


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeee--cCceeeEeEEecCCcccCCCc-EEEEEEc
Q 008058          196 SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME--HPAVFMDCRCIDNGGVDDAGL-YVLAISE  272 (579)
Q Consensus       196 ~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~s~~~  272 (579)
                      .- .+.+-.|...+....|+.+- ++.-|..++.+.........+....  +-...+..+..-.   .++++ +|++++.
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~e-Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~---~~~g~gyLivSsQ  251 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY---AADGKGYLMASSQ  251 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEE-TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE---CGGGCEEEEEEEG
T ss_pred             cC-CCCcceEEEcCCCCeEEEec-ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe---cCCCCEEEEEEcC
Confidence            64 45788999998888888875 6765555554432211111222222  1111223333310   04455 6777774


Q ss_pred             -CCeEEEEECC-Cceeec
Q 008058          273 -TGVCYIWYGQ-NIEELR  288 (579)
Q Consensus       273 -dg~i~iwd~~-~~~~~~  288 (579)
                       +++..+||.+ +.+.+.
T Consensus       252 G~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          252 GNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             GGTEEEEEESSTTCCEEE
T ss_pred             CCCEEEEEECCCCCcEEE
Confidence             7799999986 444433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.98  E-value=0.0012  Score=63.20  Aligned_cols=189  Identities=13%  Similarity=0.226  Sum_probs=117.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC--
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG--   94 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--   94 (579)
                      ..+++....++-+.|||+ +|+.++.+..  +..+++-..+.+               ....+     .-.++++...  
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~---------------~l~g~-----~~dla~as~R~~   96 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDF---------------PLNGK-----KVDIAAASNRSE   96 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEE---------------EETTE-----EEEEEEEEECST
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEeccc---------------ccCCc-----eEeEEEEeCCCC
Confidence            345555566788999999 7888887753  222222222110               00000     0112333333  


Q ss_pred             -CCeEEEEEc--cCCeEEEEecC---C--CC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC-------CCceeeE
Q 008058           95 -GGDVLALAV--SAGQLKWRLSD---C--HP-GGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL-------TGSLLGK  154 (579)
Q Consensus        95 -~g~i~iwd~--~~~~~~~~~~~---~--h~-~~V~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~-------~~~~~~~  154 (579)
                       +++|.+|++  .++. +..+..   .  .. ..+..+|+  +|. ++ +++....+|.+..|++.       +++.+++
T Consensus        97 ~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           97 GKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             TCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence             467999976  4444 323311   0  11 55777888  774 44 57888889999999883       3466777


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECC-----CCeeeEEee-cC-CCCEEEEEEe--cCCC-EEEEEecCCC
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCS-----DHKKMQKFS-GH-PGAVRFMTFS--DNGK-YVLSSAVGER  222 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~-----~~~~~~~~~-~h-~~~v~~l~~~--~~~~-~l~s~s~~d~  222 (579)
                      |.. ...+..+...+....|+.+.  .-|..|+.+     +++.+..+. ++ ...+..|++.  ++++ ||++++..++
T Consensus       176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            774 45788999998888888887  347777755     345565542 22 2468888884  5555 7777776788


Q ss_pred             eEEEEEcC
Q 008058          223 YIALWRTD  230 (579)
Q Consensus       223 ~i~vwd~~  230 (579)
                      +..+||..
T Consensus       255 s~~Vydr~  262 (355)
T 3amr_A          255 SYAIYDRQ  262 (355)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            99999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.0027  Score=63.97  Aligned_cols=189  Identities=12%  Similarity=0.110  Sum_probs=105.3

Q ss_pred             EEEEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058           10 LTSFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        10 ~~~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      .++|+|+  +..|..+...+.|+.+|..++....... .....                  ..+++.+.         +.
T Consensus       143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P------------------~giavd~d---------G~  194 (433)
T 4hw6_A          143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQC------------------ADVNFTLN---------GD  194 (433)
T ss_dssp             EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCE------------------EEEEECTT---------CC
T ss_pred             eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCc------------------cEEEECCC---------CC
Confidence            4599985  4445555444899999998887654332 11111                  23333332         55


Q ss_pred             EEEEEECCC----e-EEEEEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeeEe-ecC-C
Q 008058           88 LLVLGTGGG----D-VLALAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGSLLGKF-RAS-T  159 (579)
Q Consensus        88 ~l~~~~~~g----~-i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~-~  159 (579)
                       |+++...+    . +...+...+....... .......+++++| +|..+++-..++.|+.+|..++.....+ ... .
T Consensus       195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             -EEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             -EEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence             44444322    1 3333332221100010 1223456788999 6655555556788999998877653332 211 2


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECC--CCee--eEEeecC---------------CCCEEEEEE---------e
Q 008058          160 KGISCMAVSSDGKMLATAA---GQLKTFNCS--DHKK--MQKFSGH---------------PGAVRFMTF---------S  208 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------~  208 (579)
                      .....++|+|+|+.|+.+.   +.|+.++..  ++..  ...+.+.               -.....+++         .
T Consensus       273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            2335799999999666655   789998865  3321  1223221               123567898         6


Q ss_pred             cCCCEEEEEecCCCeEEEEEc
Q 008058          209 DNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      ++|..+++- ...+.|+.++.
T Consensus       353 ~~g~lyvaD-~~n~~I~~~~~  372 (433)
T 4hw6_A          353 DEYDFYFCD-RDSHTVRVLTP  372 (433)
T ss_dssp             CCEEEEEEE-TTTTEEEEECT
T ss_pred             CCCcEEEEE-CCCCEEEEECC
Confidence            666555544 36778888875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0037  Score=62.91  Aligned_cols=141  Identities=11%  Similarity=0.139  Sum_probs=92.3

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C----cEEEEeCCCCcee--eEeecCC
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G----MVCEIDPLTGSLL--GKFRAST  159 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g----~v~iwd~~~~~~~--~~~~~~~  159 (579)
                      ..|+++...+.|+.+|+.++...... . .......++|+++|++|+.+... +    .+..++. .+...  ..+.. .
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~~~-~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~  225 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVSTVY-S-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-G  225 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEEEE-C-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-C
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEEEe-c-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-C
Confidence            44666666678999999887764333 2 44568999999999977666542 2    3444443 33222  23322 3


Q ss_pred             CCeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          160 KGISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .....++++| +|.++++-.  +.|+.|+..++.....+. +.......++|+|+|++|+.+....+.|..++...
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            3457889999 666665543  899999998775422222 12234678999999997666655688999988764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.90  E-value=0.0087  Score=64.80  Aligned_cols=191  Identities=8%  Similarity=-0.061  Sum_probs=111.9

Q ss_pred             cEEEEEECCCeEEEEEccCCe---EEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           87 SLLVLGTGGGDVLALAVSAGQ---LKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                      .++++-...+.|+.+++....   ....+.........+|++.+.++.|+.+ ...+.|.+.++........+.......
T Consensus       437 ~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P  516 (791)
T 3m0c_C          437 RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP  516 (791)
T ss_dssp             EEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCE
T ss_pred             eeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCc
Confidence            334444455678888876521   1112223234567789999877666555 467889999986443333333344468


Q ss_pred             eEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          163 SCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ..|+++|.+..|+.+.    +.|...++........+...-.....|++++.+..|+.+-...+.|...++......   
T Consensus       517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~---  593 (791)
T 3m0c_C          517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---  593 (791)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---
T ss_pred             ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE---
Confidence            9999999765555544    578888886544333333344678899999877777776556778999998765432   


Q ss_pred             eEEeee-cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          239 CVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      .+.... .-...+.+..+       .+..+++-...+.|...|..+++.+
T Consensus       594 ~v~~~~~~l~~P~glav~-------~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          594 TILEDEKRLAHPFSLAVF-------EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEEECTTTTSSEEEEEEE-------TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEecCCCccCCCCEEEEe-------CCEEEEEECCCCEEEEEeCCCCcce
Confidence            222111 11222333322       2233334345678888887666543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=0.0006  Score=74.21  Aligned_cols=183  Identities=10%  Similarity=0.089  Sum_probs=104.4

Q ss_pred             CcEEEEEEC-CC----eEEEEEccCC-eEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce--e
Q 008058           86 SSLLVLGTG-GG----DVLALAVSAG-QLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL--L  152 (579)
Q Consensus        86 ~~~l~~~~~-~g----~i~iwd~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~--~  152 (579)
                      ++.|+.+.. +|    .|+++|+.++ +.+....   .....++.|+|||+.|+....|     ..|+.+++.++..  .
T Consensus       186 G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~  262 (751)
T 2xe4_A          186 HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDV  262 (751)
T ss_dssp             TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCE
T ss_pred             CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcE
Confidence            666665543 33    3999999998 6321111   1113467899999988777665     3688889877642  2


Q ss_pred             eEeec-CCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCe-ee--EEe-ecCCCCEEEEEEecCCCEEEEEecCC-
Q 008058          153 GKFRA-STKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHK-KM--QKF-SGHPGAVRFMTFSDNGKYVLSSAVGE-  221 (579)
Q Consensus       153 ~~~~~-~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~-~~--~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d-  221 (579)
                      ..+.. .......+.|+|||++|+...     ..|+++|+.++. ..  ..+ .+......++.|+. |..|+..+..+ 
T Consensus       263 lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~  341 (751)
T 2xe4_A          263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG  341 (751)
T ss_dssp             EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred             EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence            33332 223567889999999888654     479999998752 12  333 33445556666554 45554444333 


Q ss_pred             ---CeEEEEEcCCCcccccee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe--EEEEEC
Q 008058          222 ---RYIALWRTDGVKKQSASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV--CYIWYG  281 (579)
Q Consensus       222 ---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~--i~iwd~  281 (579)
                         ..|..+++.+....  .. +.. ......+....+.      ++..+++...+|.  |+++++
T Consensus       342 a~~~~L~~~d~~~~~~~--~~~li~-~~~~~~l~~~~~~------~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          342 AVNHKLLIAPRGQPSDW--SHVLVD-HSEDVFMESIAVR------SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CTTCEEEEEETTSTTCC--CCEEEC-CCSSEEEEEEEEC------SSEEEEEEEETTEEEEEEEEC
T ss_pred             CCCcEEEEEcCCCcccc--eeeEEC-CCCCcEEEEEEEE------CCEEEEEEEeCCEEEEEEEec
Confidence               35777776542111  11 111 1222233333332      3455666677885  555564

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.88  E-value=0.0069  Score=58.15  Aligned_cols=145  Identities=10%  Similarity=-0.038  Sum_probs=91.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEe-ecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~-~~~~~~v  162 (579)
                      +.+.++-...+.|.++++...... .+.........++++.|.+..|+.+.  ..+.|...++. |.....+ ...-...
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~-~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~P  168 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWP  168 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEE-EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCc
Confidence            334444445677888888654332 22223445679999999777776665  25788888875 4333333 2223467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      +.|+++|++..|+.+.   +.|..+|+........+.+.......+++..+  .++.+....+.|..++..+++.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCCS
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCCc
Confidence            8999999777777765   79999998743322222333455677777533  3444444678899998876653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.86  E-value=0.0083  Score=59.70  Aligned_cols=145  Identities=8%  Similarity=-0.077  Sum_probs=90.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v  162 (579)
                      +.+.++-...+.|.+.++........+ ........++++.|.+.+|+.+..  .+.|...++. |.....+ ...-...
T Consensus       171 ~~lY~~d~~~~~I~~~~~~g~~~~~l~-~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~~~~~l~~P  248 (400)
T 3p5b_L          171 SNIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWP  248 (400)
T ss_dssp             TEEEEEETTTTEEEEECTTTCSEEEEE-ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEEECSSCSCE
T ss_pred             CceEEEECCCCeEEEEeCCCCceEEEE-eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEEEECCCCce
Confidence            344444445677888888765443222 233456899999997777666652  3789999975 4333333 3333577


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      +.|+++|++..|+.+.   +.|..+|+...........  .......+++.  +..++.+....+.|..++..+++.
T Consensus       249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~  323 (400)
T 3p5b_L          249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSD  323 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCC
T ss_pred             EEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCc
Confidence            9999999888777776   7899999865433222222  23345567763  334444433567888888666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.84  E-value=0.0043  Score=58.79  Aligned_cols=152  Identities=9%  Similarity=0.039  Sum_probs=102.3

Q ss_pred             ceEEeeecccccccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCC----CC--CCEEEEEE---ccCCCEEEEEe--
Q 008058           69 TCMKWLSVDRKKKRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDC----HP--GGVSAISF---ATHGSCIYSAG--  136 (579)
Q Consensus        69 ~~~~w~~~~~~~~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~----h~--~~V~~l~~---~~~~~~l~s~~--  136 (579)
                      .+..|...         ...+.+++ ..|.|..||...+........+    ..  ..+.++.|   .|+++++++..  
T Consensus        16 E~~~wd~~---------~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           16 EDTIYDRT---------RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             SCEEEETT---------TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCccCcCC---------CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            46777665         33455555 7899999999866543333222    11  14689999   68877776543  


Q ss_pred             -----------CCCcEEEEeCC---CCceeeEeec-------------CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008058          137 -----------ADGMVCEIDPL---TGSLLGKFRA-------------STKGISCMAVSSDGKMLATAA---GQLKTFNC  186 (579)
Q Consensus       137 -----------~dg~v~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~  186 (579)
                                 .+..|..||+.   +++.+....-             .......++..++|+..++++   +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26779999998   7877655431             112478999999999999876   45666555


Q ss_pred             CCCeeeEEeec------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          187 SDHKKMQKFSG------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       187 ~~~~~~~~~~~------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      .. +.+..+..      .....+.|+++|+|..|++... ++.+..+|+..
T Consensus       167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSK  215 (334)
T ss_dssp             TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred             CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence            43 33333311      1123679999999999998875 89999999884

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.84  E-value=0.00038  Score=74.60  Aligned_cols=227  Identities=5%  Similarity=-0.077  Sum_probs=122.8

Q ss_pred             EEEccCCCEEEEEeC-CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           11 TSFSPALDYFAICSG-DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        11 ~~fs~dg~~las~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +++.++|+.++.|+. ++.+.+||..+++....-. ..                ...........+         ++.++
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~-~~----------------~~R~~~s~~~~~---------dg~iy  301 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD-MQ----------------VARGYQSSATMS---------DGRVF  301 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC-CS----------------SCCSSCEEEECT---------TSCEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC-CC----------------ccccccceEEec---------CCeEE
Confidence            577889999999984 5689999998775432110 00                001111111111         16777


Q ss_pred             EEEE-CC-----CeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEeCCCCc
Q 008058           90 VLGT-GG-----GDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGAD---------GMVCEIDPLTGS  150 (579)
Q Consensus        90 ~~~~-~~-----g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~d---------g~v~iwd~~~~~  150 (579)
                      ++|+ .+     .++.+||+.+++....-    ....... ....+..++..++.++.+         ..+..||..+..
T Consensus       302 v~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          302 TIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            7777 34     45999999988764320    0000000 001122345555555444         356788887765


Q ss_pred             eeeEeecCC---------CCeeEEEEcc-CCCEEEEEC--C-----------eEEEEECCCCeeeEEe--ecCCCC-EEE
Q 008058          151 LLGKFRAST---------KGISCMAVSS-DGKMLATAA--G-----------QLKTFNCSDHKKMQKF--SGHPGA-VRF  204 (579)
Q Consensus       151 ~~~~~~~~~---------~~v~~l~~~p-~g~~l~~~~--g-----------~i~vwd~~~~~~~~~~--~~h~~~-v~~  204 (579)
                      .......+.         ..-.++.+.. ++++++.|+  +           .|.+||..+.+.....  ..+... -.+
T Consensus       381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  460 (656)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence            333222111         1223444433 677777776  1           6888888776544332  112222 234


Q ss_pred             EEEecCCCEEEEEecCC----------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          205 MTFSDNGKYVLSSAVGE----------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       205 l~~~~~~~~l~s~s~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      +...|+++.++.+|..+          ..+.+||..+.+-.   .+..+..+.....+....     |+|+.++.|+.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---~~~~~~~~R~~hs~a~ll-----~dg~v~v~GG~  530 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---KQNPNSIVRVYHSISLLL-----PDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---ECCCCSSCCCTTEEEEEC-----TTSCEEEEECC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee---ecCCCCCccccccHhhcC-----CCcEEEecCCC
Confidence            56678999988887421          46899998775422   111222222222333443     78999998885

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.82  E-value=0.0031  Score=63.52  Aligned_cols=141  Identities=11%  Similarity=0.111  Sum_probs=88.7

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCce-eeEeecCCC
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSL-LGKFRASTK  160 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~-~~~~~~~~~  160 (579)
                      ..|+++...+.|+.+|+.++......  .......+++|+++|+ |+.+...+     .+...+...+.. ...+. ...
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~  228 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NAR  228 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECS
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccC
Confidence            44666655588999999888775332  2445689999999999 55554322     233344322211 01222 234


Q ss_pred             CeeEEEEcc-CCCEEEEEC--CeEEEEECCCCeeeEEe-ec-CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          161 GISCMAVSS-DGKMLATAA--GQLKTFNCSDHKKMQKF-SG-HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       161 ~v~~l~~~p-~g~~l~~~~--g~i~vwd~~~~~~~~~~-~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ....++++| +|.++++-.  +.|+.+|..++.....+ .. ....-..++|+|++++|+.+....+.|..++...
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            557789999 666555543  78999999877653333 21 1222346999999997766665678999988763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.0052  Score=67.24  Aligned_cols=243  Identities=9%  Similarity=0.068  Sum_probs=140.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++..+++|. |-.|+.++-|..|+..++.... +........      .  .+-....+.++.-..          ...
T Consensus       316 ~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~------~--~~l~~~~v~~i~~d~----------~g~  375 (781)
T 3v9f_A          316 RYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMN------E--SSLSNKVVSSVCDDG----------QGK  375 (781)
T ss_dssp             EEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCC------S--SCCSSSCEEEEEECT----------TSC
T ss_pred             EEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccc------c--CCCCCcceEEEEEcC----------CCC
Confidence            4447777776 4456656668888876554322 210000000      0  000011222222211          234


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec---CCCCee
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA---STKGIS  163 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~  163 (579)
                      |.+|+.++-|..||..++....-.  .......|.++...++|. |..|+.++-+..+|..+++.. .+..   ....|.
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~  453 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVR  453 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEE
T ss_pred             EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEE
Confidence            778887778999998766543110  012346799999888776 555666677999998776543 3321   345799


Q ss_pred             EEEEccCCCEEEEECCeEEEEECCCCeeeEEeecC-----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          164 CMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGH-----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      ++...++|.+.+...+-|..||..+++........     ...|.++...++|...+.+. .+| +..|+..+++..   
T Consensus       454 ~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~G-l~~~~~~~~~~~---  528 (781)
T 3v9f_A          454 VFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GGG-VGIYTPDMQLVR---  528 (781)
T ss_dssp             EEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SSC-EEEECTTCCEEE---
T ss_pred             EEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CCC-EEEEeCCCCeEE---
Confidence            99999888876666677999998876543322222     35789999999998666542 244 777887665422   


Q ss_pred             eEEee--ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          239 CVLAM--EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       239 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                       .+..  ..+...+.++..+     ++|.. ..++.+|.+..||.++++
T Consensus       529 -~~~~~~~l~~~~i~~i~~d-----~~g~l-Wi~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          529 -KFNQYEGFCSNTINQIYRS-----SKGQM-WLATGEGLVCFPSARNFD  570 (781)
T ss_dssp             -EECTTTTCSCSCEEEEEEC-----TTSCE-EEEETTEEEEESCTTTCC
T ss_pred             -EccCCCCCCCCeeEEEEEC-----CCCCE-EEEECCCceEEECCCCCc
Confidence             1111  1122344555554     56664 445556665888877654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.71  E-value=0.00018  Score=77.35  Aligned_cols=192  Identities=8%  Similarity=-0.044  Sum_probs=107.4

Q ss_pred             EEEEE-ECCCeEEEEEccC----CeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           88 LLVLG-TGGGDVLALAVSA----GQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        88 ~l~~~-~~~g~i~iwd~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                      .|+.+ ...+.|+.+++..    .... .+.........++++.+.+..|+ +-...+.|.++++........+......
T Consensus       419 ~Ly~sD~~~~~I~~~~~~g~~~~~~~~-~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~  497 (699)
T 1n7d_A          419 RIYWSDLSQRMICSTQLDRAHGVSSYD-TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSK  497 (699)
T ss_dssp             EEEECCTTTTSBEEEESCCCCC-CCCC-CBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCC
T ss_pred             eEEEEecCCCeEEEEecCCCCCCcceE-EEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCC
Confidence            34444 3456788888875    2211 12111223456788886555544 4446788999998654433333322345


Q ss_pred             eeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ...|+++|.+..|+.+.    +.|..+++........+...-...+.|+|+|++..|+.+-...+.|.++++......  
T Consensus       498 P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~--  575 (699)
T 1n7d_A          498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--  575 (699)
T ss_dssp             CCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--
T ss_pred             cceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--
Confidence            68899999766555544    578877765432222222223446789999987666666556788999998754322  


Q ss_pred             eeEEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          238 SCVLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       238 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                       .+..... ...... +.+.     . +..+++....+.|..++..+++.+..+
T Consensus       576 -~~~~~~~~~~~P~g-lavd-----~-~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          576 -TILEDEKRLAHPFS-LAVF-----E-DKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             -EECCCSSSCSSCCC-CEEE-----T-TEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             -EEEecCCcCCCceE-eEEE-----C-CEEEEEeCCCCeEEEEEccCCCceEEe
Confidence             1211111 111122 2222     2 244444455789999998888766544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.68  E-value=0.013  Score=63.45  Aligned_cols=143  Identities=8%  Similarity=-0.074  Sum_probs=89.6

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~  163 (579)
                      .++++-...+.|.+.++...... .+.........+|++.|.+.+|+.+..  .+.|...++. |.....+ ...-....
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRK-TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  561 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEE-EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEE-EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEEEeCCCCCce
Confidence            44444455677888888755433 232334456899999998777766653  2679999985 4444443 33335789


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|++++.+..|+.+.   +.|..+++........+...  -....+|++.  +.+|+.+-...+.|...+..+++
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~  634 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  634 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCc
Confidence            999998777777765   68999998654433333322  2234466653  33555554456777777766664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.67  E-value=0.006  Score=57.99  Aligned_cols=183  Identities=11%  Similarity=0.087  Sum_probs=93.1

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCe---EEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQ---LKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+     .++.+||+.+++   ...... .........+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus        63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            5566666654     359999998876   432211 111111222222  56666666643     3588999877653


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC
Q 008058          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      ...  +....... +++. -++++++.|+       ..+.+||..+.+-...  +....... ++.. -+++.++.+|..
T Consensus       141 ~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~  216 (301)
T 2vpj_A          141 SMLGDMQTAREGA-GLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFD  216 (301)
T ss_dssp             EEEEECSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBC
T ss_pred             EECCCCCCCcccc-eEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCC
Confidence            322  22111122 2222 2677777775       4689999988754322  11111111 2222 256666666532


Q ss_pred             ----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058          221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  284 (579)
                          -..+.+||+.+.+-.   .+..+..+.....++.       -+++.++.|+.+     ..+.+||.++.
T Consensus       217 ~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          217 GTAHLSSVEAYNIRTDSWT---TVTSMTTPRCYVGATV-------LRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             SSSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCcccceEEEEeCCCCcEE---ECCCCCCcccceeEEE-------ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence                246889998876522   1212222222222222       255666666654     35677777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.012  Score=59.69  Aligned_cols=151  Identities=12%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             EEEEcc-CCCEEEEE-eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEe-------eeccccc
Q 008058           10 LTSFSP-ALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKW-------LSVDRKK   80 (579)
Q Consensus        10 ~~~fs~-dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~   80 (579)
                      .++|+| ++..|..+ ...+.|++.|..++............               ......++|       .+.    
T Consensus       143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~---------------~~~p~~ia~~~~~~~~d~~----  203 (496)
T 3kya_A          143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP---------------TNRIRSIAFNKKIEGYADE----  203 (496)
T ss_dssp             EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS---------------CSBEEEEEECCCBTTTBCT----
T ss_pred             EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc---------------cCCCcEEEEeecccccCCC----
Confidence            459998 34444444 44567889998887776544321100               001223444       222    


Q ss_pred             ccccCCcEEEEEECCC-------eEEEEEccC-CeEE-----EEecCCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeC
Q 008058           81 KRKLGSSLLVLGTGGG-------DVLALAVSA-GQLK-----WRLSDCHPGGVSAISFATHGSCI-YSAGADGMVCEIDP  146 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g-------~i~iwd~~~-~~~~-----~~~~~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~  146 (579)
                           +..++++...+       .|.+++... +...     ..+. . -....+++++|++..| ++-..++.|+.+|+
T Consensus       204 -----G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          204 -----AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-A-YKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             -----TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-E-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             -----CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-c-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence                 55566665554       266665443 2221     1111 1 1234577889955554 45557788999998


Q ss_pred             C-------CCce-----------eeE-eec-CCCCeeEEEEccCCCEEEEEC---CeEEEEEC
Q 008058          147 L-------TGSL-----------LGK-FRA-STKGISCMAVSSDGKMLATAA---GQLKTFNC  186 (579)
Q Consensus       147 ~-------~~~~-----------~~~-~~~-~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~  186 (579)
                      .       ++..           ... +.. .....+.|+|+|+|+.|+.+.   +.|+.++.
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            7       5543           112 222 223568999999999766654   78888654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=0.015  Score=63.57  Aligned_cols=183  Identities=16%  Similarity=0.158  Sum_probs=114.9

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----CC
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----TK  160 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~  160 (579)
                      ..|.+|+.++-+..+|..+++...... ......|.++...++|. |..|+. +-+..||..+++........     ..
T Consensus       418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~  495 (781)
T 3v9f_A          418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLEN  495 (781)
T ss_dssp             SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred             CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccc
Confidence            346778887889999998877642211 11346799999888776 555555 45899998776543332222     35


Q ss_pred             CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec----CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          161 GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      .|.++...++|.+.+... +-+..||..+++. ..+..    ....|.++...++|...+++  .+|.+..||..+++..
T Consensus       496 ~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T--~~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          496 FVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT--GEGLVCFPSARNFDYQ  572 (781)
T ss_dssp             CEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE--TTEEEEESCTTTCCCE
T ss_pred             eeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE--CCCceEEECCCCCcEE
Confidence            789999999998877775 6688899877653 33321    13568899998998865543  3665588887765422


Q ss_pred             cceeEEeee--cCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          236 SASCVLAME--HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       236 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                          .+...  -+...+..+..+     ++|... .++.+| |..|+.++.+
T Consensus       573 ----~~~~~~gl~~~~i~~i~~d-----~~g~lW-~~t~~G-l~~~~~~~~~  613 (781)
T 3v9f_A          573 ----VFQRKEGLPNTHIRAISED-----KNGNIW-ASTNTG-ISCYITSKKC  613 (781)
T ss_dssp             ----EECGGGTCSCCCCCEEEEC-----SSSCEE-EECSSC-EEEEETTTTE
T ss_pred             ----EccccCCCCCceEEEEEEC-----CCCCEE-EEcCCc-eEEEECCCCc
Confidence                11111  112233444444     566644 445555 7777776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.65  E-value=0.0089  Score=57.91  Aligned_cols=130  Identities=12%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             CCeEEEEEccCC--eE--EEEecCCCCCCEEEEEEccCCCEEEEEe-----------------CCCcEEEEeCCCCceee
Q 008058           95 GGDVLALAVSAG--QL--KWRLSDCHPGGVSAISFATHGSCIYSAG-----------------ADGMVCEIDPLTGSLLG  153 (579)
Q Consensus        95 ~g~i~iwd~~~~--~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~-----------------~dg~v~iwd~~~~~~~~  153 (579)
                      +..|.+|++..+  ..  +..+....-...+++.+.++|.+.++..                 ..|.|+.+|.  ++ +.
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VR  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EE
Confidence            345777776653  22  2233222234689999999998766653                 1255666665  33 22


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC-Cee--eEEeecCCCCEEEEEEec-CCCEEEEEecCC-CeEE
Q 008058          154 KFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD-HKK--MQKFSGHPGAVRFMTFSD-NGKYVLSSAVGE-RYIA  225 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~-~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d-~~i~  225 (579)
                      .+...-...+.++|+||++.++.+.   +.|+.|++.. ++.  .+.+ ...+..-.+++.+ +|++.+++. .+ +.|.
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~-~~g~~v~  292 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCH-PNGMRIF  292 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEE-SCHHHHH
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEec-CCceEEE
Confidence            2222234668999999999888876   7999999863 322  2334 2345667889998 588766554 33 2344


Q ss_pred             EEEc
Q 008058          226 LWRT  229 (579)
Q Consensus       226 vwd~  229 (579)
                      .|+.
T Consensus       293 ~~~P  296 (355)
T 3sre_A          293 FYDA  296 (355)
T ss_dssp             SCCT
T ss_pred             EECC
Confidence            4443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.47  E-value=0.054  Score=52.09  Aligned_cols=154  Identities=10%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             CCCCCCEEEEEEccCCCEEEEEeCCCcEEE-EeCCCCceeeEe-ecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe
Q 008058          114 DCHPGGVSAISFATHGSCIYSAGADGMVCE-IDPLTGSLLGKF-RASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK  190 (579)
Q Consensus       114 ~~h~~~V~~l~~~~~~~~l~s~~~dg~v~i-wd~~~~~~~~~~-~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~  190 (579)
                      .++...+.++.+.|++.+++.+ .+|.++. +|- .++....+ ......+..+.+.+++++++.+. |.+++.+...++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~  236 (327)
T 2xbg_A          159 QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE  236 (327)
T ss_dssp             CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE
T ss_pred             cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCC
Confidence            3456679999999998877665 4555544 342 12222222 22345788999999999888877 888776533344


Q ss_pred             eeEEee-c---CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee-ecCceeeEeEEecCCcccCCCc
Q 008058          191 KMQKFS-G---HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-EHPAVFMDCRCIDNGGVDDAGL  265 (579)
Q Consensus       191 ~~~~~~-~---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  265 (579)
                      .-..+. +   +...+..+.+.+++..++++  .++.+ .+..+.++.-  ..+... ..+.. +..+.+.     ++ .
T Consensus       237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g--~~g~i-~~S~DgG~tW--~~~~~~~~~~~~-~~~v~~~-----~~-~  304 (327)
T 2xbg_A          237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG--GAGAL-LCSQDGGQTW--QQDVDVKKVPSN-FYKILFF-----SP-D  304 (327)
T ss_dssp             EECCCBCTTSSCCSCEEEEEESSSSCEEEEE--STTCE-EEESSTTSSC--EECGGGTTSSSC-CCEEEEE-----ET-T
T ss_pred             eeEeccCCcccCCcceEEEEecCCCEEEEEe--CCCeE-EEeCCCCccc--EEcCccCCCCCC-eEEEEEE-----CC-C
Confidence            332222 1   22358889999888766654  36766 4555555422  111100 01222 3344443     33 4


Q ss_pred             EEEEEEcCCeEEEEEC
Q 008058          266 YVLAISETGVCYIWYG  281 (579)
Q Consensus       266 ~l~s~~~dg~i~iwd~  281 (579)
                      .+++++.+|.|.-++-
T Consensus       305 ~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          305 QGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEEECSTTEEEEECC
T ss_pred             ceEEEcCCceEEEEcC
Confidence            4667778898877753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.47  E-value=0.073  Score=56.16  Aligned_cols=184  Identities=13%  Similarity=0.049  Sum_probs=109.7

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      .+|+. +....|+..++.+......+....-..+.+++|++.+..|+.+. .++.|+.+++........+.........+
T Consensus         7 ~~Ll~-s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLF-SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEE-EETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEE-EeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            34444 46788999999876543333222345789999999776666554 67889999986543333333233467889


Q ss_pred             EEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCccccceeEE
Q 008058          166 AVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       166 ~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      ++++.+..|+.+.   +.|.+.++........+...-.....|+++|...+|+.+-. ..+.|...++......   .+.
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~---~l~  162 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT---TLV  162 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEE
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE---EEE
Confidence            9998766665554   78999998754322222234455789999996556665531 2457777777655422   111


Q ss_pred             eeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECC
Q 008058          242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQ  282 (579)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~  282 (579)
                         ..-.....++++     +++..|..+. ..+.|..+|++
T Consensus       163 ---~~~~~P~GlalD-----~~~~~LY~aD~~~~~I~~~d~d  196 (628)
T 4a0p_A          163 ---PNVGRANGLTID-----YAKRRLYWTDLDTNLIESSNML  196 (628)
T ss_dssp             ---CSCSSEEEEEEE-----TTTTEEEEEETTTTEEEEEETT
T ss_pred             ---CCCCCcceEEEc-----cccCEEEEEECCCCEEEEEcCC
Confidence               122223444454     5444444443 34566666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.46  E-value=0.027  Score=53.48  Aligned_cols=183  Identities=11%  Similarity=0.102  Sum_probs=94.1

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE
Q 008058           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.+    .++.+||+.+++....-. .........+.+  +++.++.|+.+      ..+.+||+.+.+-...
T Consensus        56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~  133 (306)
T 3ii7_A           56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK  133 (306)
T ss_dssp             TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence            5566666644    569999999887542211 111111222223  66667777655      4689999887653222


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC-----------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEec
Q 008058          155 --FRASTKGISCMAVSSDGKMLATAA-----------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~-----------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                        +....... +++. -++++++.|+           ..+.+||..+.+-...  +...... .++... +++.++.+|.
T Consensus       134 ~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~  209 (306)
T 3ii7_A          134 PSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLVFV-KDKIFAVGGQ  209 (306)
T ss_dssp             CCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCE
T ss_pred             CCCcCCccee-EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEEEE-CCEEEEEeCC
Confidence              11111111 2222 3677777775           2388999988753322  1111111 122222 5666666553


Q ss_pred             CC----CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058          220 GE----RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       220 ~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  284 (579)
                      ..    ..+.+||+.+.+-.   .+..+........++.+       +++.++.|+.+     ..+.+||..+.
T Consensus       210 ~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          210 NGLGGLDNVEYYDIKLNEWK---MVSPMPWKGVTVKCAAV-------GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ETTEEBCCEEEEETTTTEEE---ECCCCSCCBSCCEEEEE-------TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             CCCCCCceEEEeeCCCCcEE---ECCCCCCCccceeEEEE-------CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            11    35888998876422   11122222222222222       55677777654     46777887664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.45  E-value=0.03  Score=53.13  Aligned_cols=183  Identities=11%  Similarity=0.056  Sum_probs=93.4

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeeE
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGADG-----MVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.+     .++.+||+.+++...... .........+.+  +++.++.|+.++     .+.+||+.+.+-...
T Consensus        62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            5566666644     348999999887542211 111111222223  566777776553     578899877643222


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecC-
Q 008058          155 --FRASTKGISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVG-  220 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~-  220 (579)
                        +...... .+++. -++++++.|+         ..+.+||..+.+-...  +....... ++.. -+++.++.+|.. 
T Consensus       140 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~  215 (302)
T 2xn4_A          140 APMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA-GVGV-LNNLLYAVGGHDG  215 (302)
T ss_dssp             CCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBSS
T ss_pred             CCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc-cEEE-ECCEEEEECCCCC
Confidence              1111112 12222 2667777765         2588999987754322  22111111 2222 256666666532 


Q ss_pred             ---CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058          221 ---ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       221 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  284 (579)
                         ...+.+||+.+.+-.   .+..+........++.       .+++.++.|+.++     .+.+||..+.
T Consensus       216 ~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          216 PLVRKSVEVYDPTTNAWR---QVADMNMCRRNAGVCA-------VNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SSBCCCEEEEETTTTEEE---EECCCSSCCBSCEEEE-------ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CcccceEEEEeCCCCCEe---eCCCCCCccccCeEEE-------ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence               136889998876422   1112221111112222       2566777776543     4788887655

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.41  E-value=0.046  Score=57.63  Aligned_cols=186  Identities=9%  Similarity=0.009  Sum_probs=107.5

Q ss_pred             EEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEee-cCCCCeeE
Q 008058           88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFR-ASTKGISC  164 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~  164 (579)
                      .|+.+. ..+.|..+++........+.........++++.+.++.|+.+ ...+.|.+.++... ....+. ..-.....
T Consensus        53 ~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~  131 (619)
T 3s94_A           53 LIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRA  131 (619)
T ss_dssp             EEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCC
T ss_pred             EEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCce
Confidence            344444 456688888775532112222233568999999966665555 46789999998643 333332 34446789


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      |+++|.+..|+.++    +.|...++............-.....|++++++..|+.+-...+.|...++.......  ..
T Consensus       132 Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~  209 (619)
T 3s94_A          132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA--VV  209 (619)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----
T ss_pred             EEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE--EE
Confidence            99999755555444    4777777754333222333345678999999877777766567789998887654321  11


Q ss_pred             E-eeecCceeeEeEEecCCcccCCCcEEEEE-EcCCeEEEEECCCceee
Q 008058          241 L-AMEHPAVFMDCRCIDNGGVDDAGLYVLAI-SETGVCYIWYGQNIEEL  287 (579)
Q Consensus       241 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~  287 (579)
                      . .+.++   . .+.+.     .+  .|+.+ ...+.|...|..+++..
T Consensus       210 ~~~~~~P---~-gi~~~-----~~--~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          210 KGSLPHP---F-ALTLF-----ED--ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             ------C---C-CEEES-----SS--EEEEECTTTCSEEEEESSSCCCC
T ss_pred             eCCCCCc---e-EEEEe-----CC--EEEEecCCCCEEEEEECCCCccc
Confidence            1 12222   1 22232     23  44444 45778999998777543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.38  E-value=0.01  Score=56.23  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=101.4

Q ss_pred             EEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE-eec----CC--CCeeEEEE---ccCCCEEEEEC----------
Q 008058          120 VSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK-FRA----ST--KGISCMAV---SSDGKMLATAA----------  178 (579)
Q Consensus       120 V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~p~g~~l~~~~----------  178 (579)
                      --++.|++....|+.++ ..++|..||...+..... +..    ..  ..+..|.|   .|+++++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            45678988666777776 789999999876644333 221    01  14689999   68888887522          


Q ss_pred             -----CeEEEEECC---CCeeeEEee--c-----------CCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCcccc
Q 008058          179 -----GQLKTFNCS---DHKKMQKFS--G-----------HPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQS  236 (579)
Q Consensus       179 -----g~i~vwd~~---~~~~~~~~~--~-----------h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~  236 (579)
                           +.+..||+.   +++.+....  .           -......++..++|+..++.+. - +.|...+..... . 
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pdG~~-~-  171 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSADGKT-V-  171 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTTSCC-E-
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCCCCE-E-
Confidence                 469999999   777655442  1           1134789999999998887774 5 666666555432 1 


Q ss_pred             ceeEEeeec----CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          237 ASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       237 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                        ..+....    ...-.+.+.+.     |+|..|++....|.|..||+.
T Consensus       172 --~~~~~~~~~~~~~~G~nGIv~~-----pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          172 --STFAWESGNGGQRPGYSGITFD-----PHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             --EEEEECCCCSSSCCSCSEEEEE-----TTTTEEEEESSSSSEEEEECS
T ss_pred             --eeeeecCCCcccccCcceEEEe-----CCCCEEEEEcCCCeEEEEcCC
Confidence              1121111    11123455666     999998888779999999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.35  E-value=0.057  Score=52.23  Aligned_cols=176  Identities=11%  Similarity=0.113  Sum_probs=100.9

Q ss_pred             CCCeEEEEEccCC--eEE-EEecC----CCCCCEEEEEEcc--CCC-EEEEEe-C--CCcEEEEeCCCC-c---eeeEee
Q 008058           94 GGGDVLALAVSAG--QLK-WRLSD----CHPGGVSAISFAT--HGS-CIYSAG-A--DGMVCEIDPLTG-S---LLGKFR  156 (579)
Q Consensus        94 ~~g~i~iwd~~~~--~~~-~~~~~----~h~~~V~~l~~~~--~~~-~l~s~~-~--dg~v~iwd~~~~-~---~~~~~~  156 (579)
                      .+|.|.++|+.+.  +.. ..+..    .......++.+.+  +|. +|+.+. .  +.+|.+|++..+ .   .+.++.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6899999999742  321 12211    1234678888876  454 455553 2  457778776543 2   233344


Q ss_pred             cCC-CCeeEEEEccCCCEEEEEC-------------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEE
Q 008058          157 AST-KGISCMAVSSDGKMLATAA-------------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       157 ~~~-~~v~~l~~~p~g~~l~~~~-------------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s  216 (579)
                      +.. ...+.+.+.++|.+.++..                   |.|+-+|.  ++ +..+...-...+.++|+||++.++.
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence            322 3688999999999887753                   23444444  33 2223223345789999999998888


Q ss_pred             EecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccC-CCcEEEEEEcC-CeEEEEE
Q 008058          217 SAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD-AGLYVLAISET-GVCYIWY  280 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d-g~i~iwd  280 (579)
                      +.+..+.|..|++...........+.   .......++.+     + +|.+.+++..+ +.|..|+
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD-----~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVD-----PVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEEC-----TTTCCEEEEEESCHHHHHSCC
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEe-----CCCCcEEEEecCCceEEEEEC
Confidence            77678899999987432221111221   12344555555     6 46666555433 2444343

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.31  E-value=0.23  Score=52.29  Aligned_cols=186  Identities=5%  Similarity=-0.053  Sum_probs=112.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSA-GADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++.+-..++.|..+++........+ ........++++.+.++.|+.+ ...+.|.+.++........+...-.....
T Consensus        49 ~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~  127 (628)
T 4a0p_A           49 NRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRA  127 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCccc
Confidence            334444455677888888765433222 2222457789998776666555 45678999998644322223233446799


Q ss_pred             EEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          165 MAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       165 l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      |+++|....|+.+.    +.|...++..... ..+...-.....|++++++..|+.+-...+.|..+++......   . 
T Consensus       128 iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v-  202 (628)
T 4a0p_A          128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---V-  202 (628)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E-
T ss_pred             EEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---E-
Confidence            99998544454443    5788888765433 3333345567899999987777777667789999999765421   1 


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .. ........ +++.      .+...++-...+.|...|..+++
T Consensus       203 ~~-~~l~~P~g-lav~------~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          203 IA-DDLPHPFG-LTQY------QDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EE-ECCSCEEE-EEEE------TTEEEEEETTTTEEEEEETTTCC
T ss_pred             ee-ccCCCceE-EEEE------CCEEEEecCCCCEEEEEECCCCC
Confidence            11 12222233 3332      23444444447888888876664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.29  E-value=0.00091  Score=71.85  Aligned_cols=143  Identities=8%  Similarity=-0.064  Sum_probs=83.8

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~  163 (579)
                      .++++-...+.|.++++...... .+.........++++.|.+.+|+.+..  .+.|..+++. |.....+ ...-...+
T Consensus       466 ~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          466 NIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  543 (699)
T ss_dssp             BCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSCSSCC
T ss_pred             cEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCCCCcc
Confidence            33444445677888888765443 232223345678899997666665543  2678888875 3333332 22233567


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|+|+|++..|+.+.   +.|..+++........+.  ........|++..+  .++.+....+.|..++..+++
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEE
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCC
Confidence            899999876666655   689999986533222222  11223345566543  444444456788888876664

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.28  E-value=0.042  Score=53.70  Aligned_cols=148  Identities=13%  Similarity=0.190  Sum_probs=95.0

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCe----------
Q 008058          126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHK----------  190 (579)
Q Consensus       126 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~----------  190 (579)
                      ..+|..++.+ .++.||.-++......+.++..    -..+..+..+|+|++||..+ ..|.|-.+..+.          
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            3355555555 3567777777644444455443    22678899999999999988 899999887321          


Q ss_pred             --eeEEeec------CCCCEEEEEEecC---CCEEEEEecCCCeEEEEEcCCCccccc-----eeEEeeecCceeeEeEE
Q 008058          191 --KMQKFSG------HPGAVRFMTFSDN---GKYVLSSAVGERYIALWRTDGVKKQSA-----SCVLAMEHPAVFMDCRC  254 (579)
Q Consensus       191 --~~~~~~~------h~~~v~~l~~~~~---~~~l~s~s~~d~~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~  254 (579)
                        ..+.+.-      ...+|..+.|||-   +..|++-. .|+.|++||+........     ...+........+...+
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt-sD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK-EDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE-TTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe-cCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence              1223321      2577999999995   45777776 699999999987432211     01112222234566777


Q ss_pred             ecCCcccCCCcEEEEEE--cCCeEEEEE
Q 008058          255 IDNGGVDDAGLYVLAIS--ETGVCYIWY  280 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~--~dg~i~iwd  280 (579)
                      |.     ++|-.|...+  .+|.|+-.-
T Consensus       187 Fg-----~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          187 FS-----KDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EC-----TTSSCEEEEECTTSCEEEEES
T ss_pred             Ec-----CCCcEEEEEecCCCCCEEEEC
Confidence            87     5666666655  778877654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.26  E-value=0.16  Score=49.81  Aligned_cols=194  Identities=12%  Similarity=0.101  Sum_probs=121.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEeecCC----C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKFRAST----K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~----~  160 (579)
                      ...+++-. ...+.++|+.+.+.+....  ...+|.--.|-.+. .|+-. .+..|+-|++.. ..+++.|.-|.    .
T Consensus        77 ~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWis~~-~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~  151 (494)
T 1bpo_A           77 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (494)
T ss_dssp             SSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEEETT-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEecCCC-eEEEE-cCCeeEEecccCCCCchhheecchhcccc
Confidence            34455554 7789999999998876653  23456666675444 44444 356799999864 35666666553    3


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEEEecC---CCeEEE
Q 008058          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLSSAVG---ERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~s~~---d~~i~v  226 (579)
                      .|..-..+++.++++..+         |.+.+|..+.+ .-..+.||...-..+.+..+  ...+++-+..   .+.+++
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi  230 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence            777888899999888654         68999998754 34556778665544443211  1123332212   268999


Q ss_pred             EEcCCC-ccc---ccee---EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          227 WRTDGV-KKQ---SASC---VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       227 wd~~~~-~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      -++... ...   ..+.   .+.-+......-....+     +.-..+...+.-|.+++||++++..+...
T Consensus       231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs-----~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCccCCCCccceeeeeeCCcccccCceeEEEec-----ccCCEEEEEecCceEEEEecccceeeeee
Confidence            988543 100   0001   11111223344444454     66678889999999999999999887643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.21  E-value=0.038  Score=52.58  Aligned_cols=183  Identities=7%  Similarity=-0.001  Sum_probs=91.4

Q ss_pred             CcEEEEEEC----C-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 008058           86 SSLLVLGTG----G-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGS  150 (579)
Q Consensus        86 ~~~l~~~~~----~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~  150 (579)
                      +.+++.|+.    +     ..+.+||+.+++...... .........+.+  +++.++.|+.+     ..+.+||+.+.+
T Consensus        71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  148 (308)
T 1zgk_A           71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE  148 (308)
T ss_dssp             TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence            455566554    2     458999998887542211 111111222233  56666666533     468899987764


Q ss_pred             eeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEec
Q 008058          151 LLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       151 ~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      -...  +........++.+  ++++++.|+       +.+.+||..+.+-..  .+....... ++... +++.++.+|.
T Consensus       149 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~  224 (308)
T 1zgk_A          149 WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGY  224 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCB
T ss_pred             EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCC
Confidence            3221  1111112222222  677777775       368999998765322  111111111 22222 5666666653


Q ss_pred             C----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058          220 G----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       220 ~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  284 (579)
                      .    -..+.+||+.+.+-.   .+..+........++..       +++.++.|+.+     ..+.+||..+.
T Consensus       225 ~~~~~~~~v~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETETWT---FVAPMKHRRSALGITVH-------QGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CSSSBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCccceEEEEeCCCCcEE---ECCCCCCCccceEEEEE-------CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            2    146889998876422   11122222111222222       45666666643     35677777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.16  E-value=0.086  Score=50.25  Aligned_cols=141  Identities=9%  Similarity=0.030  Sum_probs=72.6

Q ss_pred             CcEEEEEEC-----C------CeEEEEEccCCeEEEEecCCCCC--CEEEEEEccCCCEEEEEeCC--------CcEEEE
Q 008058           86 SSLLVLGTG-----G------GDVLALAVSAGQLKWRLSDCHPG--GVSAISFATHGSCIYSAGAD--------GMVCEI  144 (579)
Q Consensus        86 ~~~l~~~~~-----~------g~i~iwd~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~~~d--------g~v~iw  144 (579)
                      +.+++.|+.     .      ..+..||+.+++... +......  ....+.+  +++.++.|+.+        ..+.+|
T Consensus        46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~  122 (315)
T 4asc_A           46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCY  122 (315)
T ss_dssp             CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEE
T ss_pred             CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEE
Confidence            566677763     1      128889998887532 1111111  1112222  56666666632        458999


Q ss_pred             eCCCCceee--EeecCCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCC
Q 008058          145 DPLTGSLLG--KFRASTKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGK  212 (579)
Q Consensus       145 d~~~~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~  212 (579)
                      |+.+.+-..  .+...... .+++. -++++++.|+        +.+.+||..+.+-..  .+...... .+++. -+++
T Consensus       123 d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~  198 (315)
T 4asc_A          123 DRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL-FGATV-HDGR  198 (315)
T ss_dssp             ETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTE
T ss_pred             CCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhc-eEEEE-ECCE
Confidence            988764222  11111111 12222 4667777765        369999998764322  11111111 12222 2566


Q ss_pred             EEEEEecCCC----eEEEEEcCCCc
Q 008058          213 YVLSSAVGER----YIALWRTDGVK  233 (579)
Q Consensus       213 ~l~s~s~~d~----~i~vwd~~~~~  233 (579)
                      .++.+|..+.    .+.+||+.+.+
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EEEEeccCCCCccceEEEEECCCCe
Confidence            7777764322    57888887764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.16  E-value=0.051  Score=57.27  Aligned_cols=195  Identities=10%  Similarity=-0.058  Sum_probs=107.6

Q ss_pred             eEEEEccCCCEEEEEeC-CCcEEEEECCCCeE-EEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058            9 ILTSFSPALDYFAICSG-DARIKIWDTLKGQV-QTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~-dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      +.++|++.+..|..+.. .+.|..++...... ...+...-..                  ...++.....        +
T Consensus        43 ~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~------------------P~GlAvD~~~--------~   96 (619)
T 3s94_A           43 AAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS------------------PDGLACDWLG--------E   96 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSC------------------EEEEEEETTT--------T
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCC------------------cCeEEEEecC--------C
Confidence            45688887766665553 56777777764421 1112110001                  1122222211        3


Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKF-RASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~-~~~~~~v~  163 (579)
                      .+.++-...+.|.+.++...... .+....-....++++.|.+.+|+.+..  .+.|...++. |.....+ ...-...+
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~-~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~  174 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRK-VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPN  174 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEE-EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCc
Confidence            34444455677999988765432 222234456789999997666666653  4677777765 4433333 22344679


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .|++++++..|+.+.   +.|..+|+..........+.......|++..+  .++.+-...+.|...|..+++
T Consensus       175 Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          175 GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCC
T ss_pred             EEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCc
Confidence            999999877777766   78999998754432222212222345666554  555554456788888877664

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.14  E-value=0.18  Score=48.89  Aligned_cols=198  Identities=10%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|.|||++++ +..+|.|++++  ++... .+....  +    +..    +  ......+++.+.-..      +..|
T Consensus        35 ~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~-~~~~~~--v----~~~----g--~~~p~gia~~pdf~~------~g~l   92 (352)
T 2ism_A           35 ALAFLPDGGMLI-AERPGRIRLFR--EGRLS-TYAELS--V----YHR----G--ESGLLGLALHPRFPQ------EPYV   92 (352)
T ss_dssp             EEEECTTSCEEE-EETTTEEEEEE--TTEEE-EEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCEE
T ss_pred             EEEEcCCCeEEE-EeCCCeEEEEE--CCCcc-Eeecce--E----eec----C--CCCceeEEECCCCCC------CCEE
Confidence            569999998555 45679999998  45422 111110  0    000    0  011233444442111      2344


Q ss_pred             EEEECC------CeEEEEEccCCe-----EEEE-ec--CCCCCCEEEEEEccCCCEEEEEeC-------------CCcEE
Q 008058           90 VLGTGG------GDVLALAVSAGQ-----LKWR-LS--DCHPGGVSAISFATHGSCIYSAGA-------------DGMVC  142 (579)
Q Consensus        90 ~~~~~~------g~i~iwd~~~~~-----~~~~-~~--~~h~~~V~~l~~~~~~~~l~s~~~-------------dg~v~  142 (579)
                      +++...      +.|..|+...+.     .+.. +.  .+.......++|.|||...++.+.             .|.|.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~  172 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKIL  172 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEE
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEE
Confidence            444432      568888876431     1212 21  111112368999999975555432             25666


Q ss_pred             EEeCCCC------------ceeeEeecCCCCeeEEEEcc-CCCEEEEEC--CeE------EEEECCCCe-----------
Q 008058          143 EIDPLTG------------SLLGKFRASTKGISCMAVSS-DGKMLATAA--GQL------KTFNCSDHK-----------  190 (579)
Q Consensus       143 iwd~~~~------------~~~~~~~~~~~~v~~l~~~p-~g~~l~~~~--g~i------~vwd~~~~~-----------  190 (579)
                      -+|....            .....+...-.....++|+| +|.++++-.  +.+      .+.-+..+.           
T Consensus       173 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~  252 (352)
T 2ism_A          173 RLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRG  252 (352)
T ss_dssp             EECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCC
T ss_pred             EEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCC
Confidence            6765420            11111111112357789999 566555433  231      133222221           


Q ss_pred             -------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          191 -------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       191 -------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                             ++..+.. ......++| .+|..+++. ...+.|...++...
T Consensus       253 ~~~~~~~p~~~~~~-~~ap~G~~~-~~G~l~v~~-~~~~~v~~v~~~~~  298 (352)
T 2ism_A          253 NDPRYRDPLYFWPQ-GFPPGNLAF-FRGDLYVAG-LRGQALLRLVLEGE  298 (352)
T ss_dssp             CCTTSCCCSEECTT-CCCEEEEEE-ETTEEEEEE-TTTTEEEEEEEEEE
T ss_pred             CCCCCcCCeEecCC-CCCCcceEE-ECCEEEEEE-CCCCEEEEEEECCC
Confidence                   2233322 234567788 466555444 35677777776543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.023  Score=57.55  Aligned_cols=143  Identities=15%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             EEEEEEC-CCeEEEEEccCCeEEEEecCC--CCCCEEEEEE-------ccCCCEEEEEeCCC-------cEEEEeCCC-C
Q 008058           88 LLVLGTG-GGDVLALAVSAGQLKWRLSDC--HPGGVSAISF-------ATHGSCIYSAGADG-------MVCEIDPLT-G  149 (579)
Q Consensus        88 ~l~~~~~-~g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~-------~~~~~~l~s~~~dg-------~v~iwd~~~-~  149 (579)
                      .|+++.. .+.|++.|+.++.+......+  .......++|       +++|++|+.+...+       .|.+++... +
T Consensus       153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G  232 (496)
T 3kya_A          153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADG  232 (496)
T ss_dssp             EEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTS
T ss_pred             EEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCC
Confidence            3555544 466999999988876433221  2235899999       99999777776554       266776443 2


Q ss_pred             cee-----eEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECC-------CCee-----------eEEe-e-cCCCC
Q 008058          150 SLL-----GKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCS-------DHKK-----------MQKF-S-GHPGA  201 (579)
Q Consensus       150 ~~~-----~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~-------~~~~-----------~~~~-~-~h~~~  201 (579)
                      ...     ..+.. ......++++|++..|+.+.   +.|+.+|+.       ++..           ...+ . +....
T Consensus       233 ~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~  311 (496)
T 3kya_A          233 TFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW  311 (496)
T ss_dssp             CCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSC
T ss_pred             ceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCC
Confidence            221     22222 12446789999655555544   789999987       5543           1222 1 22344


Q ss_pred             EEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          202 VRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       202 v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ...|+|+|+|++|+.+-...+.|+.++...
T Consensus       312 p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            678999999997666555678898876644

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.09  E-value=0.07  Score=51.27  Aligned_cols=111  Identities=13%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec----CCCCeeEEEEccCCCEEEEEC-CeEEEEECCCC
Q 008058          115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA----STKGISCMAVSSDGKMLATAA-GQLKTFNCSDH  189 (579)
Q Consensus       115 ~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~  189 (579)
                      .....+..+.+.++++.+ .++.+|.++..+...|+....+..    ....+.++.+.+++.+++++. |.| .+....+
T Consensus       202 ~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG  279 (327)
T 2xbg_A          202 TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGG  279 (327)
T ss_dssp             CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTT
T ss_pred             CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCC
Confidence            355678999999988755 555788887775333443333321    123588999999888888887 766 4455555


Q ss_pred             eeeEEee---cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          190 KKMQKFS---GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       190 ~~~~~~~---~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      +.-..+.   .+...+..+.|.++++ +++++ .+|.|.-++-
T Consensus       280 ~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G-~~G~i~~~~~  320 (327)
T 2xbg_A          280 QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILG-QKGILLRYVT  320 (327)
T ss_dssp             SSCEECGGGTTSSSCCCEEEEEETTE-EEEEC-STTEEEEECC
T ss_pred             cccEEcCccCCCCCCeEEEEEECCCc-eEEEc-CCceEEEEcC
Confidence            5444443   2345678899987665 44555 5887776653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.99  E-value=0.29  Score=47.48  Aligned_cols=199  Identities=13%  Similarity=0.085  Sum_probs=99.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..++|.|||++++ +..+|.|++++ .++.  ..+....  +    +..    +  ......+++.+.-..      +..
T Consensus        32 ~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~--v----~~~----g--~~g~~gia~~pdf~~------~g~   89 (354)
T 3a9g_A           32 WSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFD--V----ANV----G--EAGLLGLALHPEFPK------KSW   89 (354)
T ss_dssp             EEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECC--C----CCS----T--TCSEEEEEECTTTTT------SCE
T ss_pred             eEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccc--e----eec----C--CCceeeEEeCCCCCc------CCE
Confidence            3569999997544 55669999997 3454  2222110  0    000    0  011223444442111      234


Q ss_pred             EEEEEC----C----CeEEEEEccCC-------eEEEE-ecCCCCCCEEEEEEccCCCEEEEEeC-------------CC
Q 008058           89 LVLGTG----G----GDVLALAVSAG-------QLKWR-LSDCHPGGVSAISFATHGSCIYSAGA-------------DG  139 (579)
Q Consensus        89 l~~~~~----~----g~i~iwd~~~~-------~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~-------------dg  139 (579)
                      |+++..    +    +.|..|+...+       +.+.. +..+.......+.|.|||.+.++.+.             .|
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G  169 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAG  169 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSS
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCe
Confidence            444443    2    55777776654       11111 21111112467999999986665432             24


Q ss_pred             cEEEEeCCCCce--------eeEe-ecCCCCeeEEEEcc-CCCEEEEECC-----eEEEEECCC----------------
Q 008058          140 MVCEIDPLTGSL--------LGKF-RASTKGISCMAVSS-DGKMLATAAG-----QLKTFNCSD----------------  188 (579)
Q Consensus       140 ~v~iwd~~~~~~--------~~~~-~~~~~~v~~l~~~p-~g~~l~~~~g-----~i~vwd~~~----------------  188 (579)
                      .|.-++.. ++.        ...+ .++ .....++|+| +|+++++-.+     .|.+..--.                
T Consensus       170 ~I~ri~~d-G~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~  247 (354)
T 3a9g_A          170 KILRVDEE-GRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEF  247 (354)
T ss_dssp             EEEEECTT-SCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred             EEEEEcCC-CCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCC
Confidence            56666653 320        1111 222 2357899999 6666665432     344432110                


Q ss_pred             CeeeEEeecCCCCEEEEEEe-------cCCCEEEEEecCCCeEEEEEcCCC
Q 008058          189 HKKMQKFSGHPGAVRFMTFS-------DNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       189 ~~~~~~~~~h~~~v~~l~~~-------~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ..++..+.........+.|.       .+|.++++. ...+.|...++...
T Consensus       248 ~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~-~~~~~v~~~~~~~~  297 (354)
T 3a9g_A          248 VDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIAC-LRGSMLAAVNFGDN  297 (354)
T ss_dssp             CCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEE-TTTTEEEEEEECGG
T ss_pred             cCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEE-cCCCEEEEEEECCC
Confidence            01233331122356788884       467665554 35677888887653

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.95  E-value=0.41  Score=54.24  Aligned_cols=140  Identities=13%  Similarity=0.162  Sum_probs=87.0

Q ss_pred             CcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-
Q 008058           86 SSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-  154 (579)
Q Consensus        86 ~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-  154 (579)
                      ..++++|+          ..|.|++|++..++..........++|++++-- +| +|++| ...+|++|++...+.++. 
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~  920 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTE  920 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEEEE
Confidence            57889888          347799999986655433334456889988743 45 45544 357899999976654441 


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEE--EECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKT--FNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~v--wd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                      .... ..|..+.....+++++.|+  ..|.+  |+...++....- .-+...++++.|-.++ .++.+ +.+|.+.+...
T Consensus       921 ~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~a-D~~gNl~vl~~  997 (1158)
T 3ei3_A          921 CNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGA-ENAFNLFVCQK  997 (1158)
T ss_dssp             EEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEE-ETTSEEEEEEE
T ss_pred             eecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEE-cCCCcEEEEec
Confidence            1112 1233334434578899998  55544  555444433222 2245678888887666 44444 47899998877


Q ss_pred             CC
Q 008058          230 DG  231 (579)
Q Consensus       230 ~~  231 (579)
                      ..
T Consensus       998 ~~  999 (1158)
T 3ei3_A          998 DS  999 (1158)
T ss_dssp             CT
T ss_pred             CC
Confidence            65

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.86  E-value=0.14  Score=48.20  Aligned_cols=142  Identities=13%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             CcEEEEEECC-----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeeE
Q 008058           86 SSLLVLGTGG-----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-----GMVCEIDPLTGSLLGK  154 (579)
Q Consensus        86 ~~~l~~~~~~-----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~  154 (579)
                      +.+++.|+.+     ..+.+||+.+++....-. .........+.+  +++.++.|+.+     ..+.+||+.+.+-...
T Consensus       113 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  190 (301)
T 2vpj_A          113 DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV  190 (301)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC
Confidence            5556666543     358999998887542211 111111222222  66666776654     4688999877643322


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC--
Q 008058          155 --FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE--  221 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d--  221 (579)
                        +........++.  -++++++.|+       ..+.+||..+.+-...  +....... ++.. -+++.++.+|..+  
T Consensus       191 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~  266 (301)
T 2vpj_A          191 TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GATV-LRGRLYAIAGYDGNS  266 (301)
T ss_dssp             CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSS
T ss_pred             CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEEE-ECCEEEEEcCcCCCc
Confidence              111111122222  2567777775       3689999988754322  11111111 2222 3566666665322  


Q ss_pred             --CeEEEEEcCCCc
Q 008058          222 --RYIALWRTDGVK  233 (579)
Q Consensus       222 --~~i~vwd~~~~~  233 (579)
                        ..+.+||+.+.+
T Consensus       267 ~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          267 LLSSIECYDPIIDS  280 (301)
T ss_dssp             BEEEEEEEETTTTE
T ss_pred             ccccEEEEcCCCCe
Confidence              357888887764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.78  E-value=0.27  Score=46.83  Aligned_cols=131  Identities=12%  Similarity=0.052  Sum_probs=66.7

Q ss_pred             EEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCceeeEeecCCCCe-eEEEEc
Q 008058           98 VLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLLGKFRASTKGI-SCMAVS  168 (579)
Q Consensus        98 i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~~~~~~~~~~~v-~~l~~~  168 (579)
                      +..||+.+++....-. .........+.+  +++.++.|+.+       ..+.+||+.+.+-...-....... .+++. 
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence            7889988877642211 111111222223  56667777654       358889987764322211111111 12222 


Q ss_pred             cCCCEEEEEC--------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCc
Q 008058          169 SDGKMLATAA--------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVK  233 (579)
Q Consensus       169 p~g~~l~~~~--------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d----~~i~vwd~~~~~  233 (579)
                      .++++++.|+        +.+.+||..+.+-...  +...... .+++. -+++.++.+|..+    ..+.+||+.+.+
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            4677777775        3589999988753322  1111111 12222 2566666666322    247788887764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.015  Score=55.84  Aligned_cols=116  Identities=15%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecccc-ccccccccccccccccccCccceEEeeecccccccccCCcEEEEE-ECC
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA-STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG-TGG   95 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~-~~~   95 (579)
                      ..++.++.||.|.-.|..+|+....++... .+...  ...+      ...        .        ++..++.. +.|
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~--~~~~------~~~--------~--------~~~~~vv~p~~d   66 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE--IQEP------SRL--------E--------TYETLIIEPFGD   66 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE--CCCS------CTT--------T--------SSEEEEECCSTT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE--ecCC------ccc--------c--------CCcEEEEEECCC
Confidence            478899999999999999999999887430 00000  0000      000        0        12333343 689


Q ss_pred             CeEEEEEccCCeEEEEecCC---CCCCEEE---EEE-----ccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           96 GDVLALAVSAGQLKWRLSDC---HPGGVSA---ISF-----ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~---h~~~V~~---l~~-----~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                      |.|..++..+|.....+...   ...++..   ...     ...+..+++++.+|.+...|+.+|+.+..+..
T Consensus        67 G~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           67 GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            99999999888665443211   1223332   000     01455789999999999999999999998864

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.013  Score=56.22  Aligned_cols=196  Identities=10%  Similarity=0.034  Sum_probs=105.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEE--ccCCCEEEEE--eCCCcEEEEeCCCCceeeEeecC---
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF--ATHGSCIYSA--GADGMVCEIDPLTGSLLGKFRAS---  158 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~---  158 (579)
                      +..+++++.||.|.-+|..+|+..+++......++....-  .+.+..++.+  +.||.++.+|..+|.....+...   
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            5689999999999999999999999885442233332211  0112234444  58999999999888554443321   


Q ss_pred             -CCCeeE---EEE-c----cCCCEEEEEC--CeEEEEECCCCeeeEEeecCC--CC-----EEEEEEe-----cCCCEEE
Q 008058          159 -TKGISC---MAV-S----SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHP--GA-----VRFMTFS-----DNGKYVL  215 (579)
Q Consensus       159 -~~~v~~---l~~-~----p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~--~~-----v~~l~~~-----~~~~~l~  215 (579)
                       ..++..   ..+ .    ..+..+++|+  |.+...|+++|+.+.++....  +.     ..+....     ..+..++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             112211   001 0    0344566666  899999999999998886321  11     1111110     1123455


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEe-eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLA-MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      .+. .+..+.+.+ ++++ . ....+. ..........  ...-....++.+ +.++.||.|.-+|..+|+.+.
T Consensus       170 ig~-~~y~v~~~~-~sG~-~-W~~~~s~~~~~~~~~~~--~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGK-TIFELGIHS-YDGA-S-YNVTYSTWQQNVLDVPL--ALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEE-EEEECEECC-TTSC-C-CCCEEEEEECCTTTHHH--HTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             Eec-ceEEEEEEC-CCCC-e-EEEeccccccccccccc--ccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            554 466666666 3333 1 111000 0000000000  000000134565 457899999999999988765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.60  E-value=0.25  Score=46.69  Aligned_cols=142  Identities=10%  Similarity=0.031  Sum_probs=74.4

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEecCC-CCCCEEEEEEccCCCEEEEEeC---------CCcEEEEeCCCC
Q 008058           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDC-HPGGVSAISFATHGSCIYSAGA---------DGMVCEIDPLTG  149 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~l~s~~~---------dg~v~iwd~~~~  149 (579)
                      +.++++|+.+      ..+.+||+.+++....-... .......+.+  +++.++.|+.         -..+.+||+.+.
T Consensus       102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            5566666654      34999999988754221110 1111122222  5666666653         345889998876


Q ss_pred             ceeeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEe
Q 008058          150 SLLGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       150 ~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      +-...  +...... .+++.. ++++++.|+       ..+.+||..+.+-..  .+.........+.+  +++.++.+|
T Consensus       180 ~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  255 (306)
T 3ii7_A          180 TWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAG  255 (306)
T ss_dssp             EEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEEC
T ss_pred             eEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeC
Confidence            43222  1111111 222222 677777776       468999998865322  12211111222222  566666666


Q ss_pred             cC----CCeEEEEEcCCCc
Q 008058          219 VG----ERYIALWRTDGVK  233 (579)
Q Consensus       219 ~~----d~~i~vwd~~~~~  233 (579)
                      ..    -..+.+||+.+.+
T Consensus       256 ~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTE
T ss_pred             cCCCeeeeeEEEEcCCCCe
Confidence            31    1467888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.53  E-value=0.43  Score=46.18  Aligned_cols=180  Identities=10%  Similarity=-0.013  Sum_probs=85.4

Q ss_pred             CeEEEEEccCCeEEEEecCC--CCCCEEEEEEccCCCEEEEEeCC-----------------------------------
Q 008058           96 GDVLALAVSAGQLKWRLSDC--HPGGVSAISFATHGSCIYSAGAD-----------------------------------  138 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~~~d-----------------------------------  138 (579)
                      .++.+||+.+++........  ......++.  .+++.++.|+.+                                   
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED  163 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGG
T ss_pred             ccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccc
Confidence            45999999988764221111  111222233  467777777754                                   


Q ss_pred             ----CcEEEEeCCCCceeeE--eecCCCCeeEEEEccCCCEEEEEC--------CeEEEEEC--CCCeee--EEeecCCC
Q 008058          139 ----GMVCEIDPLTGSLLGK--FRASTKGISCMAVSSDGKMLATAA--------GQLKTFNC--SDHKKM--QKFSGHPG  200 (579)
Q Consensus       139 ----g~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~--~~~~~~--~~~~~h~~  200 (579)
                          ..+.+||+.+.+-...  +......-.+++.. ++++++.|+        ..+..||+  .+.+-.  ..+.....
T Consensus       164 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          164 YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             GCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             cCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence                5789999887643222  22111111233333 566777765        35777887  443321  11111111


Q ss_pred             CEEEEEEecCCCEEEEEecCC---------------------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCc
Q 008058          201 AVRFMTFSDNGKYVLSSAVGE---------------------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGG  259 (579)
Q Consensus       201 ~v~~l~~~~~~~~l~s~s~~d---------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                      .....+...+++.++.+|..+                     ..+.+||+.+.+-.   .+..+..+.....++.     
T Consensus       243 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-----  314 (357)
T 2uvk_A          243 VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD---KSGELSQGRAYGVSLP-----  314 (357)
T ss_dssp             CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE---EEEECSSCCBSSEEEE-----
T ss_pred             cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee---eCCCCCCCcccceeEE-----
Confidence            111112234566666665211                     24778898876522   2223322222222222     


Q ss_pred             ccCCCcEEEEEEcCC------eEEEEECCCceeec
Q 008058          260 VDDAGLYVLAISETG------VCYIWYGQNIEELR  288 (579)
Q Consensus       260 ~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~  288 (579)
                        .+++.++.|+.++      .+.++++++.+.+.
T Consensus       315 --~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          315 --WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             --ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             --eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence              3567777777543      35556777665543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.52  E-value=1.4  Score=50.02  Aligned_cols=178  Identities=11%  Similarity=0.122  Sum_probs=102.5

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEE---ccC-CCEEEEEe----------CCCcEEEEeCCCCceeeEe-ecCCC
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISF---ATH-GSCIYSAG----------ADGMVCEIDPLTGSLLGKF-RASTK  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~---~~~-~~~l~s~~----------~dg~v~iwd~~~~~~~~~~-~~~~~  160 (579)
                      +.|++.|..+.+.+..+.-.....+.+++.   ..+ ..+++.|.          ..|.|++|++..++..... ....+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            458999999888776554444455666553   322 46777775          3578999998755432221 12356


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      +|++++-- +|+++++.++.|++|++...+.++.-..+-..|..+.....+.+++.+-. -..+.++..+..... . ..
T Consensus       887 ~v~al~~~-~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~-~~Sv~~~~y~~~~~~-L-~~  962 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDL-MRSVLLLAYKPMEGN-F-EE  962 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEES-SBCEEEEEEETTTTE-E-EE
T ss_pred             cCEEEeee-CCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEh-hheEEEEEEEcCCCe-E-EE
Confidence            88888755 46666666799999999876544411111112333333334667777653 445555544332211 1 12


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      ..-+.....+.++.+-      +...++.+..+|.+.++..+.
T Consensus       963 ~a~D~~~~~vta~~~l------d~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEIL------DDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEECCSCBCEEEEEEE------ETTEEEEEETTSEEEEEEECT
T ss_pred             EEeecccccEEEEEEE------ccCcEEEEcCCCcEEEEecCC
Confidence            2223333444444442      335778899999999987543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.51  E-value=0.19  Score=47.41  Aligned_cols=142  Identities=13%  Similarity=0.053  Sum_probs=74.0

Q ss_pred             CcEEEEEECCC-----eEEEEEccCCeEEEEecCCC-CCCEEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCcee
Q 008058           86 SSLLVLGTGGG-----DVLALAVSAGQLKWRLSDCH-PGGVSAISFATHGSCIYSAGAD-------GMVCEIDPLTGSLL  152 (579)
Q Consensus        86 ~~~l~~~~~~g-----~i~iwd~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~~  152 (579)
                      +.++++|+.++     ++.+||+.+++....-.... ......+.+  +++.++.|+.+       ..+.+||+.+.+-.
T Consensus       109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~  186 (302)
T 2xn4_A          109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT  186 (302)
T ss_dssp             TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred             CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence            56667776553     48899998887543211111 111122222  56666666542       45889998876432


Q ss_pred             eE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          153 GK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       153 ~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      ..  +....... +++. -++++++.|+       +.+.+||..+.+-...  +...... .++.. -+++.++.+|...
T Consensus       187 ~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~i~v~GG~~~  262 (302)
T 2xn4_A          187 YIAEMSTRRSGA-GVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCA-VNGLLYVVGGDDG  262 (302)
T ss_dssp             EECCCSSCCBSC-EEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBCS
T ss_pred             ECCCCccccccc-cEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEEE-ECCEEEEECCcCC
Confidence            22  21111122 2222 2677777775       3799999988754321  1111111 12222 3566666666321


Q ss_pred             ----CeEEEEEcCCCc
Q 008058          222 ----RYIALWRTDGVK  233 (579)
Q Consensus       222 ----~~i~vwd~~~~~  233 (579)
                          ..+.+||+.+.+
T Consensus       263 ~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          263 SCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSBCCCEEEEETTTTE
T ss_pred             CcccccEEEEcCCCCe
Confidence                247888887764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.40  E-value=0.42  Score=45.34  Aligned_cols=180  Identities=8%  Similarity=0.064  Sum_probs=91.7

Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----C-------CcEEEEeCCCCceeeE--e
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----D-------GMVCEIDPLTGSLLGK--F  155 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----d-------g~v~iwd~~~~~~~~~--~  155 (579)
                      ++.|+  ..+..||+.+++....-...............+++.++.|+.    +       ..+..||+.+++-...  +
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44444  689999999988643222212122233333457777777773    1       1277889877653221  1


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC----------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecCC--
Q 008058          156 RASTKGISCMAVSSDGKMLATAA----------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVGE--  221 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~----------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~d--  221 (579)
                      ...... .+++.. ++++++.|+          +.+.+||..+.+-..  .++..... .+++ ..+++.++.+|..+  
T Consensus        86 p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           86 PSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVL-SHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             SSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEE-EETTEEEEECCBCTTS
T ss_pred             Ccchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEE-EECCEEEEEeCCCCCC
Confidence            111111 122222 566666665          358999998865321  12111111 1222 24566666665312  


Q ss_pred             ---CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058          222 ---RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       222 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  284 (579)
                         ..+.+||+.+.+-.   .+..+..+.....++.       -+++.++.|+.++     .+.+||..+.
T Consensus       162 ~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWK---ELAPMQTARSLFGATV-------HDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             CBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEE-------ETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCeEE---ECCCCCCchhceEEEE-------ECCEEEEEeccCCCCccceEEEEECCCC
Confidence               36888998876422   1112222222222222       2567777777654     5778887665

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.19  E-value=0.2  Score=47.49  Aligned_cols=183  Identities=10%  Similarity=0.019  Sum_probs=92.1

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC----C-----CcEEEEeCCCCce
Q 008058           86 SSLLVLGTGG----GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA----D-----GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~----d-----g~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+    ..+.+||+.+++....-. .........+.+  ++..++.|+.    +     ..+.+||+.+.+-
T Consensus        25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            5566666642    359999999887642211 000111122222  5666666665    2     4688999877643


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCeeeE--EeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHKKMQ--KFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      ...  +........++.+  ++++++.|+       ..+.+||..+.+-..  .+.........+.+  +++.++.+|..
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            221  1111112222222  677777776       468999998765322  12211111122222  56666666532


Q ss_pred             ----CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC-----CeEEEEECCCc
Q 008058          221 ----ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET-----GVCYIWYGQNI  284 (579)
Q Consensus       221 ----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~  284 (579)
                          -..+.+||+.+.+-.   .+..+..+.....++.+       +++.++.|+.+     ..+.+||+.+.
T Consensus       179 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWR---MITAMNTIRSGAGVCVL-------HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEE---ECCCCSSCCBSCEEEEE-------TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCcCceEEEEeCCCCeEe---eCCCCCCccccceEEEE-------CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence                145888998776422   11112222111222222       45666666654     45788887665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.14  E-value=0.4  Score=42.36  Aligned_cols=137  Identities=10%  Similarity=0.037  Sum_probs=78.7

Q ss_pred             CcEEEEEECCCeEEEEEccCCeE------EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee------e
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQL------KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL------G  153 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~------~  153 (579)
                      ..+|+....| +++.=.+.++..      ..++-.+-=..+.+++|+|+|.+ +.. .+|.++-.+..++...      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGEL-YGV-LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCE-EEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccE-EEE-eCCeEEEECCCCCCccccccccc
Confidence            3445556665 655544444331      11221111246789999998874 444 7888888887553221      1


Q ss_pred             Eeec-CCCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEEeec-CCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          154 KFRA-STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQKFSG-HPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       154 ~~~~-~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~------~~~~~~-h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                      .+-. --....++.|.|+|.+.++..|.|+-++-.+...      -..+.. -=..+..|.|.|+|...++.   |+.++
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~ly  157 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAVSKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFY  157 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEE
T ss_pred             EecccccccceEEEECCCCCEEEeCCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEE
Confidence            1110 0012578999999999999669998887533211      011111 11457899999999766553   66654


Q ss_pred             EEE
Q 008058          226 LWR  228 (579)
Q Consensus       226 vwd  228 (579)
                      -+.
T Consensus       158 r~~  160 (236)
T 1tl2_A          158 KAL  160 (236)
T ss_dssp             EEC
T ss_pred             ecC
Confidence            433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.10  E-value=0.4  Score=54.25  Aligned_cols=195  Identities=11%  Similarity=0.101  Sum_probs=115.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecC----CC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRAS----TK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~----~~  160 (579)
                      ...++.- ....+.|+|+.+...+....  ...+|.--.|-.+.. |+-. .+..|+-|++... .+++.|.-|    ..
T Consensus        77 ~~iiALr-ag~~lQiFnl~~k~klks~~--~~e~VvfWkWis~~~-l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~  151 (1630)
T 1xi4_A           77 SKVIALK-AGKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLNT-VALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (1630)
T ss_pred             cceEEEe-cCCeEEEeehHHhhhhcccc--cCCCceEEEecCCCe-eEEE-cCCeEEEeccCCCCccHHHHhcchhcccC
Confidence            3445554 36779999999887765542  235677777765443 3333 2556999999642 444445444    34


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEe--cCCCEEEEEec---CCCeEEE
Q 008058          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS--DNGKYVLSSAV---GERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~~~l~s~s~---~d~~i~v  226 (579)
                      .|..-..+++.++++..+         |.+.+|..+.+ .-..+.||.+....+...  +....+++-+.   ..+.++|
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi  230 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence            777888899999888654         78999988654 233456676554444332  11122322221   1267888


Q ss_pred             EEcCCC-c--cc-cce---eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          227 WRTDGV-K--KQ-SAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       227 wd~~~~-~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      -++... .  .. ...   ..+.-+......-.+..+     +.-..+...+.-|.+++||+.|+..+....
T Consensus       231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs-----~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EecCCCccCCCCCccccccccCCcccccCcceEEEec-----cccCEEEEEecCceEEEEecccchhhhhcc
Confidence            888543 1  00 000   111111222333333343     566778888999999999999998876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.06  E-value=0.52  Score=44.77  Aligned_cols=101  Identities=17%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CcEEEEEECC-------CeEEEEEccCCeEEEEec-CCCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCce
Q 008058           86 SSLLVLGTGG-------GDVLALAVSAGQLKWRLS-DCHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-------g~i~iwd~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~  151 (579)
                      +.+++.|+.+       .++.+||+.+++....-. ......-..+.  .+++.++.|+.      -..+.+||+.+.+-
T Consensus       110 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          110 DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            5566676653       248899998887542211 00001111222  36666666653      23589999987643


Q ss_pred             eeE--eecCCCCeeEEEEccCCCEEEEEC-------CeEEEEECCCCe
Q 008058          152 LGK--FRASTKGISCMAVSSDGKMLATAA-------GQLKTFNCSDHK  190 (579)
Q Consensus       152 ~~~--~~~~~~~v~~l~~~p~g~~l~~~~-------g~i~vwd~~~~~  190 (579)
                      ...  +...... .+++. -++++++.|+       ..+.+||..+.+
T Consensus       188 ~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          188 KDLAPMKTPRSM-FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             EEECCCSSCCBS-CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             EECCCCCCCccc-ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            222  1111111 22222 2677777775       368899988764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.95  E-value=0.048  Score=53.28  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=78.5

Q ss_pred             cccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058            5 NIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus         5 ~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .|+.+  ..||+|++||..+ +.+|.|-.+-.+.....-.+....+....|...-........+..+.|+|....     
T Consensus        67 ~i~ql--vlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~-----  138 (452)
T 3pbp_A           67 DTFHV--ISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR-----  138 (452)
T ss_dssp             TTCEE--EECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG-----
T ss_pred             ceeEE--EECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC-----
Confidence            45444  8999999999887 457888877633211000000011111122211001112456888999998766     


Q ss_pred             CCcEEEEEECCCeEEEEEccCCeE-EEEec--------CCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeC
Q 008058           85 GSSLLVLGTGGGDVLALAVSAGQL-KWRLS--------DCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDP  146 (579)
Q Consensus        85 ~~~~l~~~~~~g~i~iwd~~~~~~-~~~~~--------~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~  146 (579)
                       +..|++-+.|+.|++||+..... ...+.        ......|.+++|.+++-.|+..+  ..|.|+..-.
T Consensus       139 -ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP  210 (452)
T 3pbp_A          139 -DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYP  210 (452)
T ss_dssp             -GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESS
T ss_pred             -CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECC
Confidence             78999999999999999986321 11111        11225688889988766666654  6676665543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.95  E-value=1.3  Score=42.82  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=20.2

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECC
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTL   35 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~   35 (579)
                      ..++|.|||++|..+...|.|++++..
T Consensus        21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           21 WALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            356999999844455668999999853

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.93  E-value=1.4  Score=43.19  Aligned_cols=235  Identities=11%  Similarity=0.120  Sum_probs=137.8

Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           10 LTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        10 ~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      +.--+|..+.+|.=. ..++.|+|+++...+..+.-.                   ..+.--.|.+.          +.|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-------------------e~VvfWkWis~----------~~l  119 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-------------------DDVTFWKWISL----------NTV  119 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-------------------SCCCEEEEEET----------TEE
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-------------------CCceEEEecCC----------CeE
Confidence            334578888887765 568999999998887766522                   12333445543          334


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecC
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                      +.. .+..|+.|++.......+.+..|    ...|..-..+++.++++..+       -.|.+.+|..+.+ .-+.+.+|
T Consensus       120 ~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh  197 (494)
T 1bpo_A          120 ALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  197 (494)
T ss_dssp             EEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred             EEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence            443 45679999997543332333333    35688888899999876543       2467889997644 44567777


Q ss_pred             CCCeeEEEEccC---CCEEEEEC-----CeEEEEECCCC---e------eeEEe-e--cCCCCEEEEEEecCCCEEEEEe
Q 008058          159 TKGISCMAVSSD---GKMLATAA-----GQLKTFNCSDH---K------KMQKF-S--GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       159 ~~~v~~l~~~p~---g~~l~~~~-----g~i~vwd~~~~---~------~~~~~-~--~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ......+.+..+   .++++.+.     +.++|-++...   .      .+..+ +  ...+-..++..++.-..++..+
T Consensus       198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT  277 (494)
T 1bpo_A          198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT  277 (494)
T ss_dssp             EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE
T ss_pred             eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe
Confidence            655444443321   12334332     68889888532   1      11111 1  1123355778888776666666


Q ss_pred             cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          219 VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                       .-|.+.+||+.++...     +...-....+-..+..     ....=++.....|.|.--.++....+
T Consensus       278 -K~G~i~lyDleTgt~i-----~~nrIs~~~iF~t~~~-----~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          278 -KYGYIHLYDLETGTCI-----YMNRISGETIFVTAPH-----EATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             -TTSEEEEEETTTCCEE-----EEEECCSSCEEEEEEE-----TTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             -cCceEEEEecccceee-----eeecccCCceEEeccc-----CCCCcEEEEccCceEEEEEEccccch
Confidence             6899999999999744     3322222222222222     33344555667777766655554443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.39  E-value=3.8  Score=44.23  Aligned_cols=178  Identities=14%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~  160 (579)
                      ...|.+|+.+| +..||..+++... ........|.++.. .+| .|..++.+ -+..+|..+++.. .+.     ....
T Consensus        73 ~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~  146 (758)
T 3ott_A           73 NTYLYMGTDNG-ILVYNYRADRYEQ-PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNN  146 (758)
T ss_dssp             TTEEEEEETTE-EEEEETTTTEECC-CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCS
T ss_pred             CCcEEEEeCCC-eEEEeCCCCEEEC-cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCC
Confidence            45678888765 7899998876532 11112345777754 344 56667666 5888998765533 331     1234


Q ss_pred             CeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEee--cC----CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GH----PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~--~h----~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .|.++...++|.+.+...+-+..|+..+++.. .+.  ..    ...|.++...+++..|..++ . +-+..++..+++.
T Consensus       147 ~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-~-~Gl~~~~~~~~~~  223 (758)
T 3ott_A          147 TIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-E-GYLFQYFPSTGQI  223 (758)
T ss_dssp             CEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEE-E-EEEEEEETTTTEE
T ss_pred             eEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEE-C-CCCeEEcCCCCeE
Confidence            68899888888877765566888998776532 221  11    12488888887766555554 2 3588888776542


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      .   ....+  ....+..+...     ++|.. ..|+. +-+.+++..+.
T Consensus       224 ~---~~~~l--~~~~i~~i~~d-----~~g~l-WigT~-~Gl~~~~~~~~  261 (758)
T 3ott_A          224 K---QTEAF--HNNSIKSLALD-----GNGDL-LAGTD-NGLYVYHNDTT  261 (758)
T ss_dssp             E---EEEEE--EEEEEEEEEEC-----TTCCE-EEEET-TEEEEECCTTS
T ss_pred             E---eccCC--CCCeEEEEEEc-----CCCCE-EEEeC-CceeEEecCCC
Confidence            2   11111  12234445444     45554 44554 45788887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.19  E-value=1  Score=43.45  Aligned_cols=98  Identities=12%  Similarity=0.165  Sum_probs=61.0

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce--eeEee---cCCCCeeEEEEccC---CCEEEEEC--------CeE
Q 008058          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL--LGKFR---ASTKGISCMAVSSD---GKMLATAA--------GQL  181 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~---~~~~~v~~l~~~p~---g~~l~~~~--------g~i  181 (579)
                      ...++++|.|+|+. +.+..+|.|++++  +++.  +..+.   ........|+++|+   +..|+++.        +.|
T Consensus        31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            45789999999985 4555779999998  4542  11111   12347899999998   44444432        467


Q ss_pred             EEEECCCCe-----ee-EEee---cCCCCEEEEEEecCCCEEEEEe
Q 008058          182 KTFNCSDHK-----KM-QKFS---GHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       182 ~vwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ..|+...++     .+ ..+.   +.......++|.|+|..+++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            788876431     12 2233   1112246899999997666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.08  E-value=2.5  Score=40.50  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=23.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~   39 (579)
                      ..++|.|||+++++--..|+|++++..++..
T Consensus        35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~   65 (347)
T 3das_A           35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRK   65 (347)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             eEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence            3569999998776665589999998766654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.80  E-value=1.2  Score=50.63  Aligned_cols=190  Identities=13%  Similarity=0.160  Sum_probs=107.4

Q ss_pred             EccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEE
Q 008058           13 FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLG   92 (579)
Q Consensus        13 fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~   92 (579)
                      -+|..+.+|.=. ..++.|+|+++...+..+.-                   ..++.--.|.+          .+.|+..
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------------~e~VvfWkWis----------~~~l~lV  122 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------------TDDVTFWKWIS----------LNTVALV  122 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------------CCCceEEEecC----------CCeeEEE
Confidence            467777666554 56788888877766554431                   11222333443          2334433


Q ss_pred             ECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCCC
Q 008058           93 TGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        93 ~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                       .+..|+.|++.........+..|    ...|..-..+++.++++..|       -.|.+.+|....+ .-+.+.||.+.
T Consensus       123 -T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~  200 (1630)
T 1xi4_A          123 -TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAAS  200 (1630)
T ss_pred             -cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhh
Confidence             35679999997543332333333    45688888889999866543       3478888887543 33445666554


Q ss_pred             eeEEEEc--c-CCCEEEEEC-----CeEEEEECCCC---ee------eEEe-ec--CCCCEEEEEEecCCCEEEEEecCC
Q 008058          162 ISCMAVS--S-DGKMLATAA-----GQLKTFNCSDH---KK------MQKF-SG--HPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       162 v~~l~~~--p-~g~~l~~~~-----g~i~vwd~~~~---~~------~~~~-~~--h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      ...+...  + ...+++.+.     +.++|-++...   ..      +..+ +.  ...-..++..++.-..+...+ .-
T Consensus       201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it-k~  279 (1630)
T 1xi4_A          201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-KY  279 (1630)
T ss_pred             hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe-cC
Confidence            4333332  1 122333332     57888887542   11      1111 11  122234566666555555555 58


Q ss_pred             CeEEEEEcCCCccc
Q 008058          222 RYIALWRTDGVKKQ  235 (579)
Q Consensus       222 ~~i~vwd~~~~~~~  235 (579)
                      |.+.++|+.++...
T Consensus       280 G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          280 GYIHLYDLETGTCI  293 (1630)
T ss_pred             ceEEEEecccchhh
Confidence            99999999998754

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.73  E-value=4.2  Score=41.29  Aligned_cols=256  Identities=11%  Similarity=0.103  Sum_probs=134.8

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccc-cccCccceEEeeecc-ccc---ccccCCcEEEEEEC
Q 008058           20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE-HLSVDYTCMKWLSVD-RKK---KRKLGSSLLVLGTG   94 (579)
Q Consensus        20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~-~~~---~~~~~~~~l~~~~~   94 (579)
                      |.+|+..|.|+|+-+-+++.+..+....... ..-|..+-+.. -+. ....+.|-... |..   ....+++++++-..
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~-~~G~G~t~esk~il~-~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk  150 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDS-ATGWGLTNESRHIMG-DSAKFLNGDCHHPHISMTDGKYDGKYLFINDK  150 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCT-TTCTTTBHHHHHHHG-GGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCC-CcccCCchhHHHHHh-cCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence            5678889999999999999988775221100 00000000000 000 00011121100 000   00113777888775


Q ss_pred             C-CeEEEEEccCCeEEEEecCCCCCCEEEEEEc--cCCCEEEEEeC-------CCcE---------EE---EeCCCCcee
Q 008058           95 G-GDVLALAVSAGQLKWRLSDCHPGGVSAISFA--THGSCIYSAGA-------DGMV---------CE---IDPLTGSLL  152 (579)
Q Consensus        95 ~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~--~~~~~l~s~~~-------dg~v---------~i---wd~~~~~~~  152 (579)
                      . ..|-..++..-++-..+.-.....+.++.|-  |+..|+++++.       ||..         .+   .|..+.+..
T Consensus       151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~  230 (638)
T 3sbq_A          151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA  230 (638)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred             CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence            4 4588888888776555544567789999996  68888887753       2321         01   122222221


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEECC-------CCe-------eeEEeec----
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNCS-------DHK-------KMQKFSG----  197 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-g----------------~i~vwd~~-------~~~-------~~~~~~~----  197 (579)
                      ..+.. .+....+...++|++.++.+ +                -+.++|+.       .|+       -+..+.+    
T Consensus       231 ~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~  309 (638)
T 3sbq_A          231 FQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD  309 (638)
T ss_dssp             EEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred             EEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence            11111 12233445566777766653 1                25555542       010       0112211    


Q ss_pred             -----------CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc-------ccceeE-EeeecCceeeEeEEecCC
Q 008058          198 -----------HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK-------QSASCV-LAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       198 -----------h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~  258 (579)
                                 -......+.++|||++++.++--+.++.++|++....       ....++ ...+ .+.-..-..|+  
T Consensus       310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd--  386 (638)
T 3sbq_A          310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFD--  386 (638)
T ss_dssp             TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEEC--
T ss_pred             ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEEC--
Confidence                       1123457889999999999988889999999985221       001111 1222 22222335565  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          259 GVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                         ++|.-..+.-.|..|.-|+++..
T Consensus       387 ---~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          387 ---GRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             ---SSSEEEEEETTTTEEEEEEHHHH
T ss_pred             ---CCCceEeeeeecceEEEEeccHH
Confidence               78854444557999999998654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.72  E-value=1.5  Score=46.84  Aligned_cols=147  Identities=9%  Similarity=0.086  Sum_probs=80.1

Q ss_pred             CcEEEEEECC----CeEEEEEccCCeEEEEe-c------CCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCC
Q 008058           86 SSLLVLGTGG----GDVLALAVSAGQLKWRL-S------DCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~----g~i~iwd~~~~~~~~~~-~------~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~  148 (579)
                      +.+++.|+.+    .++.+||+.+++..... .      ......-..+.+..+++.++.|+.+      ..+.+||+.+
T Consensus       398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence            5566666643    45999999988754322 1      1111122233332267677777643      3588899887


Q ss_pred             Cceee--EeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEE-----eecCCCCEEEEEEecC-CCEEEE
Q 008058          149 GSLLG--KFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQK-----FSGHPGAVRFMTFSDN-GKYVLS  216 (579)
Q Consensus       149 ~~~~~--~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~-----~~~h~~~v~~l~~~~~-~~~l~s  216 (579)
                      .+-..  .+.... .-.+++...++++++.|+    +.+.+||..+.+-...     +.........+.+..+ ++.++.
T Consensus       478 ~~W~~~~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          478 REWSMIKSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TEEEECCCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CcEEECCCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            53222  111111 112333334788888887    2799999988753221     1111112233555555 556666


Q ss_pred             EecC-C-----CeEEEEEcCCCc
Q 008058          217 SAVG-E-----RYIALWRTDGVK  233 (579)
Q Consensus       217 ~s~~-d-----~~i~vwd~~~~~  233 (579)
                      +|.. +     +.+.+||+.+..
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCcCCCCCeeeCcEEEEEccCCc
Confidence            6531 2     458899998876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.70  E-value=3.3  Score=39.95  Aligned_cols=126  Identities=13%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             EEEEECCCeEEEEEccCCe-EEEEe--cCCCCCCEEEEEEccC---CCEEEEEeC----C----CcEEEEeCCCC--c--
Q 008058           89 LVLGTGGGDVLALAVSAGQ-LKWRL--SDCHPGGVSAISFATH---GSCIYSAGA----D----GMVCEIDPLTG--S--  150 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~-~~~~~--~~~h~~~V~~l~~~~~---~~~l~s~~~----d----g~v~iwd~~~~--~--  150 (579)
                      ++++...|.|++++ ..++ .+..+  .........+++|+|+   +..|+.+..    +    ..|..|+....  .  
T Consensus        42 l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~  120 (354)
T 3a9g_A           42 YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLK  120 (354)
T ss_dssp             EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEE
T ss_pred             EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcC
Confidence            77778889999997 3444 22221  1122356899999998   556665543    3    56888887543  1  


Q ss_pred             ---ee-eEeecC-CCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCC---------eeeEEeecCCCC
Q 008058          151 ---LL-GKFRAS-TKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDH---------KKMQKFSGHPGA  201 (579)
Q Consensus       151 ---~~-~~~~~~-~~~v~~l~~~p~g~~l~~~~---------------g~i~vwd~~~~---------~~~~~~~~h~~~  201 (579)
                         .+ ..+... ......|+|.|||.++++.+               |.|.-++....         ..+. -.+|.. 
T Consensus       121 ~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~rn-  198 (354)
T 3a9g_A          121 EVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGHRN-  198 (354)
T ss_dssp             EEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECCSC-
T ss_pred             ccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEccCC-
Confidence               11 112211 12346799999998777642               24555554321         0111 134443 


Q ss_pred             EEEEEEec-CCCEEEEE
Q 008058          202 VRFMTFSD-NGKYVLSS  217 (579)
Q Consensus       202 v~~l~~~~-~~~~l~s~  217 (579)
                      ...++|+| +++.+++-
T Consensus       199 p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          199 PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             CCEEEECTTTCCEEEEE
T ss_pred             cceEEEeCCCCCEEEEe
Confidence            46799999 67655543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.51  E-value=3.6  Score=39.60  Aligned_cols=129  Identities=12%  Similarity=0.126  Sum_probs=71.3

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE---EE---ecCCCCCCEEEEEEccC---CCEEEEEeC--------CCcEEEEeCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLK---WR---LSDCHPGGVSAISFATH---GSCIYSAGA--------DGMVCEIDPLT  148 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~---~~---~~~~h~~~V~~l~~~~~---~~~l~s~~~--------dg~v~iwd~~~  148 (579)
                      ++.++++...|.|++++.. +...   ..   ...........++|+|+   +..|+.+..        ...|..|++..
T Consensus        29 G~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           29 NHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSD  107 (353)
T ss_dssp             TCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECT
T ss_pred             CCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECC
Confidence            5536677788999999853 3321   11   11112356799999996   556655532        23566676653


Q ss_pred             C--c--eeeE-eec------CCCCeeEEEEccCCCEEEEEC---------------CeEEEEECCCCe------------
Q 008058          149 G--S--LLGK-FRA------STKGISCMAVSSDGKMLATAA---------------GQLKTFNCSDHK------------  190 (579)
Q Consensus       149 ~--~--~~~~-~~~------~~~~v~~l~~~p~g~~l~~~~---------------g~i~vwd~~~~~------------  190 (579)
                      +  +  .... +..      .......|+|.|||.++++.+               |.|.-++....-            
T Consensus       108 ~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~  187 (353)
T 2g8s_A          108 DLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGV  187 (353)
T ss_dssp             TSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTS
T ss_pred             CCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCC
Confidence            3  1  1111 111      111246799999997776643               356666654320            


Q ss_pred             eeEEe-ecCCCCEEEEEEec-CCCEEEE
Q 008058          191 KMQKF-SGHPGAVRFMTFSD-NGKYVLS  216 (579)
Q Consensus       191 ~~~~~-~~h~~~v~~l~~~~-~~~~l~s  216 (579)
                      ....+ .+|. ....++|+| +|+.+++
T Consensus       188 ~~~i~a~G~r-np~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          188 RAEIWSYGIR-NPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTEEEECCS-EEEEEEEETTTTEEEEE
T ss_pred             CccEEEEcCc-CccceEEECCCCCEEEE
Confidence            11122 2343 357899999 6655444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.47  E-value=3.2  Score=38.91  Aligned_cols=157  Identities=10%  Similarity=0.069  Sum_probs=89.2

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCC
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDG  171 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g  171 (579)
                      +.|+..++..++.. .+..   ..  +..|+++++.|+-..    .+..|+..++. |.....+..+..    .+++|+|
T Consensus        88 ~~Iy~i~~dg~~~~-~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~~~~~~g  156 (302)
T 3s25_A           88 NSLCRIKRNGHGST-VLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----FTCNTSD  156 (302)
T ss_dssp             EEEEEEETTSCCCE-EEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----CCSEEET
T ss_pred             CeEEEEeCCCCcce-Eeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----eEeeEEC
Confidence            45777777766533 2211   12  236778899988775    34466666765 444444443332    4567888


Q ss_pred             CEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC-CeEEEEEcCCCccccceeEEeeecCc
Q 008058          172 KMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE-RYIALWRTDGVKKQSASCVLAMEHPA  247 (579)
Q Consensus       172 ~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~  247 (579)
                      +.|+-.+   .+|++-++..+.....+.   +... ..++|++.+|+-+...+ ..|..-++......      .+....
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~------~Lt~~~  226 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV------VLTEAN  226 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE------ECSCSC
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE------EEeCCC
Confidence            8888665   688888887765443333   2232 34669999888775323 35666666654422      111111


Q ss_pred             eeeEeEEecCCcccCCCcEEEEEEc--CCeEEEEECC
Q 008058          248 VFMDCRCIDNGGVDDAGLYVLAISE--TGVCYIWYGQ  282 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~  282 (579)
                        +  .+++     |++.+|..++.  .+.|..-+++
T Consensus       227 --~--~~~~-----~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          227 --I--EHYN-----VYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             --E--EEEE-----EETTEEEEEECSSSCEEEEEETT
T ss_pred             --c--ceEE-----ECCCEEEEEECCCCcEEEEEECC
Confidence              1  2354     77788776543  3455555544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.26  E-value=0.96  Score=39.97  Aligned_cols=136  Identities=10%  Similarity=0.023  Sum_probs=78.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCce------eeEeecC--CCCeeEEEEccCCCEEEEECCeEEEEECCCCee------eEE
Q 008058          129 GSCIYSAGADGMVCEIDPLTGSL------LGKFRAS--TKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK------MQK  194 (579)
Q Consensus       129 ~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~--~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~------~~~  194 (579)
                      ...|+....| +++.=.+.++..      ..++ +.  -..+..++|+|+|.+.++.+|.++-.+..+.+.      -..
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccE
Confidence            3456666666 666655554431      1222 22  237789999999998888558877777654211      111


Q ss_pred             ee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc--eeEEeeecCceeeEeEEecCCcccCCCcEEEEE
Q 008058          195 FS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA--SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       195 ~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      +-  +-.. -..+.|.|+|.+.++ +  ||.|+-++..+......  .....-...-..+..+++.     |+|...++.
T Consensus        82 IG~~Gw~~-F~a~~fD~~G~LYav-~--dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-----p~G~Lyav~  152 (236)
T 1tl2_A           82 IGNGGWNQ-FQFLFFDPNGYLYAV-S--KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-----PNGYLYAVH  152 (236)
T ss_dssp             EECSCGGG-CSEEEECTTSCEEEE-E--TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-----TTSCEEEEE
T ss_pred             eccccccc-ceEEEECCCCCEEEe-C--CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-----CCceEEEEe
Confidence            11  1111 468899999976665 3  69888887644332210  0011111122344778887     898877666


Q ss_pred             EcCCeEE
Q 008058          271 SETGVCY  277 (579)
Q Consensus       271 ~~dg~i~  277 (579)
                        ||.++
T Consensus       153 --dg~ly  157 (236)
T 1tl2_A          153 --GQQFY  157 (236)
T ss_dssp             --TTEEE
T ss_pred             --CCcEE
Confidence              77754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.25  E-value=3.6  Score=38.59  Aligned_cols=133  Identities=10%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CcEEEEEE--CCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeEeecCCC
Q 008058           86 SSLLVLGT--GGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        86 ~~~l~~~~--~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      +..|+...  .++  .|...++...... ++.. +..    ..|+|+++.|+-.+. ...|+..++..+.....+.   +
T Consensus       115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~-~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~  185 (302)
T 3s25_A          115 GNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKN-HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---C  185 (302)
T ss_dssp             TTEEEEEEESSSSCEEEEEEETTSCCCE-EEES-SCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---S
T ss_pred             CCEEEEEeecCCCCceEEEEECCCCCeE-EEeC-CCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---C
Confidence            56677665  333  4666666543332 3322 222    456788888887765 6788888987655443333   2


Q ss_pred             CeeEEEEccCCCEEEEEC----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-CCCeEEEEEcCCCc
Q 008058          161 GISCMAVSSDGKMLATAA----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-GERYIALWRTDGVK  233 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-~d~~i~vwd~~~~~  233 (579)
                      ... ..++|++.+|+-..    ..|..-++.... ...+..  ..+  ..|+|++..|+.+.. ....|..-++....
T Consensus       186 ~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          186 NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            222 34669888888765    267666766543 334432  233  347888988887642 23567777776644

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.12  E-value=4.7  Score=42.96  Aligned_cols=148  Identities=9%  Similarity=0.025  Sum_probs=79.5

Q ss_pred             CcEEEEEECC------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeE---
Q 008058           86 SSLLVLGTGG------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGK---  154 (579)
Q Consensus        86 ~~~l~~~~~~------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~---  154 (579)
                      +.++++|+.+      .++.+||+.+++....-.......-.+++...+++.++.|+.++  .+.+||+.+.+-...   
T Consensus       452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~  531 (695)
T 2zwa_A          452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK  531 (695)
T ss_dssp             TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS
T ss_pred             CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC
Confidence            5666776643      35899999987654221100111112233324778888887654  699999887642221   


Q ss_pred             --eecCCCCeeEEEEccC-CCEEEEEC---------CeEEEEECCCCee-----eEEeec---CCCCEEEEEEecCCCEE
Q 008058          155 --FRASTKGISCMAVSSD-GKMLATAA---------GQLKTFNCSDHKK-----MQKFSG---HPGAVRFMTFSDNGKYV  214 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~-g~~l~~~~---------g~i~vwd~~~~~~-----~~~~~~---h~~~v~~l~~~~~~~~l  214 (579)
                        .........++.+..+ +++++.|+         +.+.+||+.+.+.     ...+..   ....-.++....+++.+
T Consensus       532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iy  611 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL  611 (695)
T ss_dssp             SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEE
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEE
Confidence              1111122234555655 66777765         2588999988761     222211   11111233344446666


Q ss_pred             EEEecC-------CCeEEEEEcCCCc
Q 008058          215 LSSAVG-------ERYIALWRTDGVK  233 (579)
Q Consensus       215 ~s~s~~-------d~~i~vwd~~~~~  233 (579)
                      +.+|..       ...+.+||+.+.+
T Consensus       612 v~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          612 IVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EECCccCCCCCCCCCeEEEEECCCCe
Confidence            666531       2458888887764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.96  E-value=1.8  Score=41.60  Aligned_cols=137  Identities=13%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCE-EEEEEccCCCEEEEEeC------CCcEEEEeC--CCCce--eeEeecCCCCeeE
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGV-SAISFATHGSCIYSAGA------DGMVCEIDP--LTGSL--LGKFRASTKGISC  164 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~l~s~~~------dg~v~iwd~--~~~~~--~~~~~~~~~~v~~  164 (579)
                      ..+.+||+.+++....-.......- .+++.. +++.++.|+.      ...+.+||+  .+.+-  +..+........+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4799999998875422111111111 222222 5556666653      345777876  33321  1111111111122


Q ss_pred             EEEccCCCEEEEEC-C-----------------------eEEEEECCCCee--eEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058          165 MAVSSDGKMLATAA-G-----------------------QLKTFNCSDHKK--MQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       165 l~~~p~g~~l~~~~-g-----------------------~i~vwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      .+...++++++.|+ .                       .+.+||..+.+-  +..+......-.  +...+++.++.+|
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEee
Confidence            22233667777776 1                       478999887543  333332222212  2334677777777


Q ss_pred             cCC-----CeEEEEEcCCCccc
Q 008058          219 VGE-----RYIALWRTDGVKKQ  235 (579)
Q Consensus       219 ~~d-----~~i~vwd~~~~~~~  235 (579)
                      ...     ..+.++++++++..
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeE
Confidence            421     13555677776643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.59  E-value=6.6  Score=39.29  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=21.6

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV   39 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~   39 (579)
                      ..++|.|||+++++-...+.|++++..++..
T Consensus        30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~   60 (454)
T 1cru_A           30 HALLWGPDNQIWLTERATGKILRVNPESGSV   60 (454)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred             eEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence            4569999998776654335788887655553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.51  E-value=9.4  Score=38.14  Aligned_cols=101  Identities=10%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEeec------CCCCeeEEEEccC---CCEEEEEC--------
Q 008058          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKFRA------STKGISCMAVSSD---GKMLATAA--------  178 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~------~~~~v~~l~~~p~---g~~l~~~~--------  178 (579)
                      ...++++|.|+|+.+++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|..+.        
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45689999999986666543357998886555432  22221      2346779999995   44444332        


Q ss_pred             -------CeEEEEECCCC-------eeeE-Eeec-CCCCEEEEEEecCCCEEEEEe
Q 008058          179 -------GQLKTFNCSDH-------KKMQ-KFSG-HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       179 -------g~i~vwd~~~~-------~~~~-~~~~-h~~~v~~l~~~~~~~~l~s~s  218 (579)
                             ..|.-|+...+       +.+. .+.. .......|+|.|||.++++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   24555554321       1122 2221 123468999999998777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.17  E-value=1.3  Score=44.81  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=68.9

Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCC------ee-------eEEeecCCCCEEEEEEecCCCEEEEEecCCCe
Q 008058          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH------KK-------MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY  223 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~------~~-------~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~  223 (579)
                      .....+.++|||+++++++   .++.++|++..      +.       +.... -.......+|.++| ...++-.-|..
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecce
Confidence            3456789999999999998   69999998742      11       22222 22345678999999 55566567999


Q ss_pred             EEEEEcCCC------ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          224 IALWRTDGV------KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       224 i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      |.-|++...      +.. ...+..+.-+-..-.....-.....++|++|++.+.
T Consensus       401 vvkWni~~a~~~~~g~~~-~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKV-NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEES
T ss_pred             EEEEeccHHHHHhcCccC-CeeeeccccccCCcccccCCCccCCCCccEEEEecc
Confidence            999998653      211 123333443333333332222233488999988854

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.94  E-value=11  Score=35.91  Aligned_cols=102  Identities=12%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee--eEe----ecCCCCeeEEEEccC----CCEEEEE---C-CeEE
Q 008058          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL--GKF----RASTKGISCMAVSSD----GKMLATA---A-GQLK  182 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~----~~~~~~v~~l~~~p~----g~~l~~~---~-g~i~  182 (579)
                      -...+.++|.|||+.+++--..|.|++++...++..  ..+    .........|+++|+    +.+.++-   . +.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            356799999999987766655899999987655432  111    123457899999995    4444431   2 5666


Q ss_pred             EEECCCC----------eee-EEeec-CCCCEEEEEEecCCCEEEEEe
Q 008058          183 TFNCSDH----------KKM-QKFSG-HPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       183 vwd~~~~----------~~~-~~~~~-h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      -|....+          +.+ ..+.. ....-..|.|.|||..+++.+
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            6766541          112 22321 112345799999998777765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.69  E-value=20  Score=38.40  Aligned_cols=140  Identities=12%  Similarity=0.148  Sum_probs=85.8

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEec---CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-----
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLS---DCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-----  158 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----  158 (579)
                      ..|.+++.+ -+..||..+++...-..   .-....|.++...++|... .++.+| +..+|..+++.. .+...     
T Consensus       113 g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~-~~~~~~~~~~  188 (758)
T 3ott_A          113 DTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LCRYIPSNGKFE-GIPLPVHSSQ  188 (758)
T ss_dssp             TEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EEEEETTTTEEE-EECCCCCTTC
T ss_pred             CcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-HhhCccCCCceE-EecCCCcccc
Confidence            357777766 68889988766532100   1123468888888777654 455544 788897766432 22211     


Q ss_pred             -CCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          159 -TKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       159 -~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                       ...|.++...+++..|..|. +-+..+|..+++......-....|.++...++|...+. + .+ -+.+++..+..
T Consensus       189 ~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T-~~-Gl~~~~~~~~~  262 (758)
T 3ott_A          189 SNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-T-DN-GLYVYHNDTTP  262 (758)
T ss_dssp             SSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-E-TT-EEEEECCTTSC
T ss_pred             ccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-e-CC-ceeEEecCCCc
Confidence             12488888888777555555 66888998776542211112345788888888876554 3 34 47788876543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=88.30  E-value=15  Score=33.68  Aligned_cols=188  Identities=14%  Similarity=0.139  Sum_probs=104.7

Q ss_pred             CcEEEEEECCCeEEE---EEccCCeEEEEecCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCc------eeeEe
Q 008058           86 SSLLVLGTGGGDVLA---LAVSAGQLKWRLSDCHPGGVSAISFAT-HGSCIYSAGADGMVCEIDPLTGS------LLGKF  155 (579)
Q Consensus        86 ~~~l~~~~~~g~i~i---wd~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~------~~~~~  155 (579)
                      ...++.-+..|.++-   |++..+.... ++ .....|..+.... +..+++..+.+|.++...+....      ....+
T Consensus        35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l  112 (276)
T 3no0_A           35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL  112 (276)
T ss_dssp             TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred             CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence            345778888888554   4444333221 22 2456677765422 56789999999999999865432      22223


Q ss_pred             ecCCCCeeEEEEccCC-CEEEEEC-CeEEEEECCC---------CeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          156 RASTKGISCMAVSSDG-KMLATAA-GQLKTFNCSD---------HKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g-~~l~~~~-g~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      +. .+.+..+....+. .+++... |.++.+....         |.....+.. ...|..+...+++.+++..+ ..|.+
T Consensus       113 ke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T-~~G~~  189 (276)
T 3no0_A          113 TE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVIT-AKGRV  189 (276)
T ss_dssp             CT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEE-TTSCE
T ss_pred             CC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEe-CCCcE
Confidence            32 3345555444333 4455555 8877776532         112222332 34566665555566777776 68999


Q ss_pred             EEEEcCCCcccc--ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEE--EECCCc
Q 008058          225 ALWRTDGVKKQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYI--WYGQNI  284 (579)
Q Consensus       225 ~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~i--wd~~~~  284 (579)
                      +...+..-....  ...+..+...+..+.+...      .+...++..+.+|.+..  ++...-
T Consensus       190 kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~------~~~~~i~~~t~~G~~ir~~~~~~~i  247 (276)
T 3no0_A          190 KKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPI------KEEVELLITTKNGKAFYDKINQKDI  247 (276)
T ss_dssp             EEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEE------SSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred             EEeEHHHcccCCCCCcceEEEcCCCcEEEEEEe------CCCCEEEEEcCCCeEEEeeeCHHHC
Confidence            988875432211  1122223333444443333      24456777888888887  876543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=82.95  E-value=35  Score=32.92  Aligned_cols=133  Identities=11%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             eEEEEEccCC--eEEEEecCC-----CCCCEEEEEEc---cC----CCEEEEEe-CCCcEEEEeCCCCceeeEee----c
Q 008058           97 DVLALAVSAG--QLKWRLSDC-----HPGGVSAISFA---TH----GSCIYSAG-ADGMVCEIDPLTGSLLGKFR----A  157 (579)
Q Consensus        97 ~i~iwd~~~~--~~~~~~~~~-----h~~~V~~l~~~---~~----~~~l~s~~-~dg~v~iwd~~~~~~~~~~~----~  157 (579)
                      +|.+||+.++  +.+.++.-.     ..+.+.++.+.   |+    +.+++.+. ..+-|.++|+.+++..+...    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5889999999  887665321     23468888887   22    34455444 46789999999887655432    1


Q ss_pred             C--------------CCCeeEEEEccC----CCEEEEEC-CeEEEEECCC-----C---eeeEEeecCC---CCEEEEEE
Q 008058          158 S--------------TKGISCMAVSSD----GKMLATAA-GQLKTFNCSD-----H---KKMQKFSGHP---GAVRFMTF  207 (579)
Q Consensus       158 ~--------------~~~v~~l~~~p~----g~~l~~~~-g~i~vwd~~~-----~---~~~~~~~~h~---~~v~~l~~  207 (579)
                      .              ...+..|+++|+    ++.|.-.. ..-++|.+.+     .   ..++.+ |..   +.-..+++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~  282 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAY  282 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEE
Confidence            0              237889999998    77777665 4445554432     1   122222 222   23345667


Q ss_pred             e-cCCCEEEEEecCCCeEEEEEcCC
Q 008058          208 S-DNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       208 ~-~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      . .+|..+++- ...+.|..|+..+
T Consensus       283 D~~~G~ly~~~-~~~~aI~~w~~~~  306 (381)
T 3q6k_A          283 DPKTKVIFFAE-ANTKQVSCWNTQK  306 (381)
T ss_dssp             CTTTCEEEEEE-SSSSEEEEEETTS
T ss_pred             eCCCCeEEEEe-ccCCeEEEEeCCC
Confidence            5 567555554 4788999999876

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=81.16  E-value=41  Score=32.46  Aligned_cols=138  Identities=9%  Similarity=0.052  Sum_probs=77.8

Q ss_pred             cEEEEeCCCC--ceeeEeecC------CCCeeEEEEc---cC----CCEEEEEC---CeEEEEECCCCeeeEEeecC---
Q 008058          140 MVCEIDPLTG--SLLGKFRAS------TKGISCMAVS---SD----GKMLATAA---GQLKTFNCSDHKKMQKFSGH---  198 (579)
Q Consensus       140 ~v~iwd~~~~--~~~~~~~~~------~~~v~~l~~~---p~----g~~l~~~~---g~i~vwd~~~~~~~~~~~~h---  198 (579)
                      .|.+||+.++  +.++++.-.      ...+..+.+.   |+    +.++..++   +.|.|||+.+++..+.+..+   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778999998  888776532      2367888887   32    34555554   68999999998765544210   


Q ss_pred             ---------------CCCEEEEEEecC----CCEEEEEecCCCeEEEEEcCCCcccc---ceeEEeeecCc--eeeEeEE
Q 008058          199 ---------------PGAVRFMTFSDN----GKYVLSSAVGERYIALWRTDGVKKQS---ASCVLAMEHPA--VFMDCRC  254 (579)
Q Consensus       199 ---------------~~~v~~l~~~~~----~~~l~s~s~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~--~~~~~~~  254 (579)
                                     ...+..|+.+|+    ++.|........  ++|.+.+.-...   ...+..+....  ..-....
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE
Confidence                           135778888887    777777664333  444443211100   01111222211  1111222


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          255 IDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      .+    +.+|..+++--..+.|..|+..+
T Consensus       282 ~D----~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          282 YD----PKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EC----TTTCEEEEEESSSSEEEEEETTS
T ss_pred             Ee----CCCCeEEEEeccCCeEEEEeCCC
Confidence            31    03566666666677888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1kb0a2	573	b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen	7e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1flga_	582	b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-05
d2ad6a1	571	b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c	3e-05
d1kv9a2	560	b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen	3e-05
d1w6sa_	596	b.70.1.1 (A:) Methanol dehydrogenase, heavy chain	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (169), Expect = 1e-13
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 102 AVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG 161
            +S        S     G         G  + S   D  +   D  TG  L         
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           +  +   S GK + + A    L+ ++  + + M+  + H   V  + F     YV++ + 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS- 308

Query: 220 GERYIALW 227
            ++ + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 24/168 (14%), Positives = 43/168 (25%), Gaps = 8/168 (4%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
             +      A CS D  +++W     + + E  +         +        +S      
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
              S         GS           +    VS G     L   H   V  + F + G  
Sbjct: 210 TKKSGKPGPFLLSGSR-------DKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKF 261

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           I S   D  +   D      +    A    ++ +        + T + 
Sbjct: 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 44/315 (13%), Positives = 85/315 (26%), Gaps = 53/315 (16%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            S +  +   F P        S DA IK+WD   G  +        +     + +  +  
Sbjct: 17  RSPVTRV--IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74

Query: 63  HLSVDYTCMKWLSVDRKKKRKL---------------GSSLLVLGTGGGDVLALAVSAGQ 107
                   +K       +  +                    +V  +    +    V  G 
Sbjct: 75  ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 108 LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
                   H   V  +     G+ I S   D  V      T     + R     + C++ 
Sbjct: 135 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193

Query: 168 SSDGKMLATAA----------------------GQLKTFNCSDHKKMQKFSGHPGAVRFM 205
           + +    + +                         +K ++ S    +    GH   VR +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAG 264
            F   GK++LS A  ++ + +W       ++  C+  +  H                   
Sbjct: 254 LFHSGGKFILSCA-DDKTLRVWDY-----KNKRCMKTLNAHEHFVTSLDFHKTAP----- 302

Query: 265 LYVLAISETGVCYIW 279
            YV+  S      +W
Sbjct: 303 -YVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 37/296 (12%), Positives = 79/296 (26%), Gaps = 60/296 (20%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISC----------- 164
           H   V+ + F    S + SA  D  +   D  TG      +  T  +             
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 165 -------------------------------MAVSSDGKMLATAA--GQLKTFNCSDHKK 191
                                          +++  +G  + +A+    +K +       
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLS-SAVGERYIALWRTDGVKKQ--------SASCVLA 242
           ++ F+GH   VR +  + +G  + S S      + +  T   K +               
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 243 MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV 302
               +   +    +       G ++L+ S      +W       L               
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255

Query: 303 NSKSQKSATAA------IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED 352
           +S  +   + A      ++  K +  +K  + H      L    +    +V    D
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 12/161 (7%), Positives = 45/161 (27%), Gaps = 13/161 (8%)

Query: 154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
                   ++ +       ++ +A+    +K ++       +   GH  +V+ ++F  + 
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS- 70

Query: 212 KYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS 271
                       +    +  +  +            +      + +  +   G ++++ S
Sbjct: 71  ----------GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 272 ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA 312
                 +W  Q    ++     +        N      A+ 
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 18  DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD 77
             F   + DA  K+WD  +G  +  F                   H S D   + +   +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTF-----------------TGHES-DINAICF-FPN 237

Query: 78  RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA 137
                  G++           L    +  +L     D    G++++SF+  G  + +   
Sbjct: 238 -------GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290

Query: 138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFN 185
           D      D L     G        +SC+ V+ DG  +AT +    LK +N
Sbjct: 291 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 28/175 (16%), Positives = 46/175 (26%), Gaps = 17/175 (9%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H G V ++S A       S   D      D   G     F      I+ +    
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 170 DGKMLATAAG----QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA 225
           +G   AT +     +L                    +  ++FS +G+ +L+    +    
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCN 295

Query: 226 LWRTDGVKKQSASCVLAME-HPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
           +W         A     +  H          D+G        V   S      IW
Sbjct: 296 VWDA-----LKADRAGVLAGHDNRVSCLGVTDDGM------AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
           H   + A+ + T    + SA  DG +   D  T + +      +  +   A +  G  +
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 23/135 (17%)

Query: 181 LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV 240
            K ++  +    Q F+GH   +  + F  NG    + +              +       
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT---------CRLFDLRAD 258

Query: 241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKA-------- 292
             +   +       I +     +G  +LA  +   C +W     +               
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

Query: 293 ------TKILSSSED 301
                   + + S D
Sbjct: 319 GVTDDGMAVATGSWD 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            S+I  I   F P  + FA  S DA  +++D    Q    +                  +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTY----------------SHD 267

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSA 122
           ++    T + +    R         LL+ G    +              L+  H   VS 
Sbjct: 268 NIICGITSVSFSKSGR---------LLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSC 317

Query: 123 ISFATHGSCIYSAGADGMVC 142
           +     G  + +   D  + 
Sbjct: 318 LGVTDDGMAVATGSWDSFLK 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 44/307 (14%), Positives = 89/307 (28%), Gaps = 24/307 (7%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
            ++T      +     S D  +K+W  + G+             +S   + +     +  
Sbjct: 18  HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVL--------GTGGGDVLALAVSAGQLKWRLSDCHPGG 119
              +             G +  V            G     L V   +    L       
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA- 178
            +       G  + S   D MV   DP T + L   +  T      ++  DG  + + + 
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSL 195

Query: 179 -GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA 237
              ++ ++      +   +GH      M   DN   +L S   +  + +W      +   
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK-TGQCLQ 251

Query: 238 SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILS 297
           +     +H +     +   N        +V+  S+ G   +W  +  E +RN    +   
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN--------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 303

Query: 298 SSEDVNS 304
           S   V  
Sbjct: 304 SGGVVWR 310

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 50/237 (21%)

Query: 110 WRLSDC--------HPGGV-SAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK 160
           WR  +         H   V + + F   G+ I S   D  +     +TG  L      T 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 161 GISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFM--------------- 205
           G+    +  +  +  +    LK +N    + +    GH   VR M               
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 206 -------------TFSDNGKYVLSSAVGERYIALWRTDGVKK----QSASCVLAMEHPAV 248
                            +   V       R +     D + K    ++ +C+  ++    
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN 178

Query: 249 FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK 305
            +     D       G++V++ S      +W  +    +      + L+S  ++   
Sbjct: 179 RVYSLQFD-------GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 228

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 28/210 (13%), Positives = 47/210 (22%), Gaps = 17/210 (8%)

Query: 7   RDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLS 65
            D             +    +   +I  T     +    D       +           +
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPT 213

Query: 66  VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISF 125
                 +        K       L            A       W+    H         
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAE-------RADGWRPGGWQQVAYHRALDRIYLL 266

Query: 126 ATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQL 181
                      A   V  +D  TG  L KF      I  + VS D K L  A       L
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTL 325

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNG 211
              +    ++++  +      + +T +D G
Sbjct: 326 YIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 20/279 (7%), Positives = 57/279 (20%), Gaps = 62/279 (22%)

Query: 12  SFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETT--------- 52
             +    + A  S              ++++D +      +     +             
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 53  -SLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSA------ 105
            +  G  L     S            +  KR L                           
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 106 ------GQLKWR----LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK- 154
                 G  +              ++  +++     +      G + +ID  +G      
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLP 232

Query: 155 ---------------------FRASTKGISCMAVSSDGKMLATAAG--QLKTFNCSDHKK 191
                                            +               +   +    ++
Sbjct: 233 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVL-SSAVGERYIALWRT 229
           + KF      +  +  S + K +L + + G++ + +   
Sbjct: 293 LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

 Score = 49.6 bits (117), Expect = 7e-07
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 9/119 (7%)

Query: 96  GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF 155
           G +LA    A +  W +    P     ++  T G+ ++   ADG +      TG  L + 
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAGNVVFQGTADGRLVAYHAATGEKLWEA 514

Query: 156 RASTKGISC-MAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK 212
              T  ++       DG+  ++ A G    +         + +   G     TF   GK
Sbjct: 515 PTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYG-----LAARATERQGPGTVYTFVVGGK 568

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHK--KMQKFSGHPGAVRFMTFSDNGKYVLSS 217
           ISC A + D   +A      ++  +  S +K  ++ +   H G V  + ++ +   +++ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
              +R   +W   G   +    +L +   A  +    
Sbjct: 70  G-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 13/165 (7%), Positives = 39/165 (23%), Gaps = 11/165 (6%)

Query: 120 VSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFRASTKGISCMAVSSDGKMLATA 177
           +S  ++    + I     +  V   +        + + +     ++ +  + D   + T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 178 A--GQLKTFNCSDHK-KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
                   +       K                    +   +   G R I++   +    
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                   +           + +       + + A S    C I+
Sbjct: 130 WW------VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.6 bits (114), Expect = 1e-06
 Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 5/270 (1%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
            FS   +Y A    +   +++    G +    +D ++        N        +    +
Sbjct: 69  KFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC 131
            + S D K         L+      +   + +  G  +   S  +      +   +    
Sbjct: 128 CF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKK 191
           +         C +       +     S      +A  S  + +     +          +
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246

Query: 192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD 251
            +  +GH  +V  + F+ +G+ V+S +  +R + LW       +S S         V   
Sbjct: 247 NESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305

Query: 252 CR--CIDNGGVDDAGLYVLAISETGVCYIW 279
                + +        Y+L+ S+      W
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 7e-05
 Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 152 LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG------------- 197
           L K    T  + C+  S+DG+ LAT      + +  SD   + + S              
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114

Query: 198 -----HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDC 252
                    +R + FS +GK++ + A           +              +   +   
Sbjct: 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174

Query: 253 RCIDNGGVDDAGLYVLAISETGVCYIWY---GQNIEELRNTKATKILSSSEDVNSKSQKS 309
                 G  D  + +  +             G     +       I + S D   +   S
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234

Query: 310 ATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNS 349
            T  +   +L    +  + H    Y ++     Q ++  S
Sbjct: 235 ETGFLV-ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
                 H   V ++ FA  G    S G D ++       G+ + + +  +  +    +S 
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISV 316

Query: 170 DGKMLATAAG 179
           D K + T +G
Sbjct: 317 DDKYIVTGSG 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 10/111 (9%)

Query: 116 HPGGVSAISFATHGSC---IYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGK 172
             G   A SF               D ++    P     +       + +  + +S+  +
Sbjct: 6   AMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTR 64

Query: 173 MLATAAG------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS 217
            + T          +                    +R      +G  ++  
Sbjct: 65  HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG 115

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 10/115 (8%), Positives = 35/115 (30%), Gaps = 5/115 (4%)

Query: 115 CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKML 174
                + ++ +   G  +          E+  +      +       +  +  +  GK  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF 280

Query: 175 ATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
            +      L  +       + +      +V     S + KY+++ + G++   ++
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGS-GDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 166 AVSSDGKMLATAAGQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERY 223
            V++DG+M                +  ++ +   H   V  +T S+  ++V +   G+  
Sbjct: 16  HVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG--GKGC 73

Query: 224 IALWR-TDGVKKQSASCVLAMEHPAVFMDCRCIDNG 258
           + +W  +    K   S +  +        C+ + +G
Sbjct: 74  VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 7/228 (3%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYT 69
           + SP     AI     R+++        +    D  +      +    +   L+   D +
Sbjct: 88  ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147

Query: 70  CMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL--SDCHPGGVSAISFAT 127
            +  L  D         +L+                  L                 +   
Sbjct: 148 KLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGK-FRASTKGISCMAVSSDGKMLATAAGQLKTFNC 186
                        +  +D  TG +  +  R         AV+        A   L++F+ 
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDL 267

Query: 187 SDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK 234
             +  +++    P +   +  S +G  V         +A +  + ++K
Sbjct: 268 EKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGD-LAAYDAETLEK 313

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 16/159 (10%), Positives = 36/159 (22%), Gaps = 10/159 (6%)

Query: 132 IYSAGADGMVCEIDPLTGSLLGKFRASTKGIS--CMAVSSDGKMLATAAGQ--------L 181
           I +      +  ID    ++      +  G +     V+  G++      +        L
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 182 KTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL 241
            T        +        ++     S +GK +       R           + +     
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 242 AMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
            +     F   R I        G  +  +          
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMA 166
            P    +++ +T GS ++  GA G +   D  T    G+          +A
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 48/373 (12%), Positives = 102/373 (27%), Gaps = 29/373 (7%)

Query: 88  LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPL 147
             V     G +  +   + ++   +       V     +  G  +   G D  +  ID  
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVID--TGYAVHISRMSASGRYLLVIGRDARIDMIDLW 91

Query: 148 TGSL-----LGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHP 199
                    +     +    S      + +     A    Q    +    +  Q  S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 200 GAVRFMTFSDNGKY---VLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCID 256
             V   T+    +    + S    E  + +  T  V   +   +  +   ++       D
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 257 NGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQK----SATA 312
            G       ++ A + +    +   ++          K        N    K     +T+
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271

Query: 313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLK 372
            +    +  I      H   A+  + +   Q       +  +   S   V    +     
Sbjct: 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKT-HPKSSHLYVDTTFNPD--- 327

Query: 373 SKRGRYVQNRVTALDRAN--AEDAVLPLPKILDSYDKKNR--HQNLSSDLDEVMTDVVDS 428
                 +   V   D  N  A+  VLP+ +  D  +   R      +   DEV   V + 
Sbjct: 328 ----ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 429 ESQAKFMEIKDDK 441
           ++ +  + + DDK
Sbjct: 384 KNDSSALVVVDDK 396

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 13/165 (7%), Positives = 30/165 (18%), Gaps = 18/165 (10%)

Query: 15  PALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWL 74
                    S  +     D +      E              ++     L         L
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEV------------VSKPFVIPLIPGSPNPTKL 235

Query: 75  SVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS 134
                          +                       +      S        +    
Sbjct: 236 VPR--SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 135 AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAAG 179
           A   G++ + D  T  +          ++ + +S+D K +     
Sbjct: 294 APEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKD 334

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 14/132 (10%)

Query: 109 KWRLSDCHPGGVSAISFATHGSCIYSAGADG-------MVCEIDPLTGSLLGKFRASTKG 161
           K  +    PG  +            +   D            +DP    ++    +S   
Sbjct: 219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
            S             A   G L  ++       +K +     +  +  S + K V+    
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRK- 333

Query: 220 GERYIALWRTDG 231
            +  I  +  + 
Sbjct: 334 DDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 169 SDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVL-SSAVGERYIAL 226
            DG ++A  + GQ    + S    ++     P  +R++    + K           ++ +
Sbjct: 13  LDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI 70

Query: 227 WRTDGVKKQ 235
           +     K +
Sbjct: 71  YDYRTGKAE 79

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 17/228 (7%), Positives = 44/228 (19%), Gaps = 12/228 (5%)

Query: 13  FSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM- 71
            SP            +      +    + E    A                + +      
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 72  -KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG------VSAIS 124
                      +    +                 +                     +   
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGKMLATAAGQLK 182
           F        +A        +D  TG    +  A  +    + +    D   +     +L 
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLA 275

Query: 183 TFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTD 230
            ++    K ++  +        + F   G  +         +A++  D
Sbjct: 276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 46/239 (19%)

Query: 12  SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCM 71
           +     +Y  + +    + + D     V             +          ++ D    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAM--------MAPD---- 50

Query: 72  KWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDC-----HPGGVSAISFA 126
                          +  VL    GD+  + +   +  +  +           + + + +
Sbjct: 51  -------------NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAIS 97

Query: 127 THGSCIYSAGAD------------GMVCEIDPLTGSLLGKFRA--STKGISCMAVSSDGK 172
             G  +Y+                  +       G      R     + +  M  + DG 
Sbjct: 98  PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157

Query: 173 MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG 231
           +   A   +   +    K            R    + +  Y           ++  T  
Sbjct: 158 LY-VAGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 29/160 (18%)

Query: 8   DILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVD 67
             +  F       A           D   G+  T                +   +   + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----------------QEFADLTELY 254

Query: 68  YTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT 127
           +T ++                  +      +    +   +L    +         ++F  
Sbjct: 255 FTGLRS-----------PKDPNQIYGVLNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDK 301

Query: 128 HGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV 167
            G  +Y  G    +   +P T   +   +     +S    
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV 219
           I+C  +  +   + T A    ++ ++  + K + + SGH G V  + ++  G  V  S  
Sbjct: 16  ITC--LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73

Query: 220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
               +   +              +    +      
Sbjct: 74  RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 108

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 6/68 (8%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 162 ISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQK-FSGHPGAVRFMTFSDNGKYVLSSAV 219
            +         +L + +  Q   +N    K +          +  + F            
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 344

Query: 220 GERYIALW 227
           G+ ++ + 
Sbjct: 345 GQSFLEIL 352

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 10/95 (10%), Positives = 20/95 (21%), Gaps = 1/95 (1%)

Query: 164 CMAVSSDGKMLATAAGQ-LKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGER 222
            +  +  G  +    G  + T         + ++ H         S +G Y  S  V   
Sbjct: 22  VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDN 257
                 T        +  +                
Sbjct: 82  VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.0 bits (105), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G + A+   +G++ W   +  P     ++  T G+ +++   DG     D  +G  
Sbjct: 462 DDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFTGTGDGYFKAFDAKSGKE 519

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAG 179
           L KF+  +  +S  +    DG+  L    G
Sbjct: 520 LWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 40/366 (10%), Positives = 98/366 (26%), Gaps = 68/366 (18%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
            ++I  +  S      +   CSGD  +K+WD      +         ++ S + ++    
Sbjct: 14  DADIFSV--SACN--SFTVSCSGDGYLKVWDNKLLDNENPK-----DKSYSHFVHKSGLH 64

Query: 63  HLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL---------S 113
           H+ V    ++  + +          L+   +  GD+L   ++      ++         S
Sbjct: 65  HVDV-LQAIERDAFELC--------LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDS 115

Query: 114 DCHPGGVSAISFATHGSC-----IYSAGADGMV------------------CEIDPLTGS 150
           D       A+ +           + +    G                             
Sbjct: 116 DMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 175

Query: 151 LLGKFRASTKGISCMAVSSDGKMLATAAG--------QLKTFNCSDHKKMQKFSGHPGAV 202
            +      ++  + + +S  G ++AT                   + +       +  ++
Sbjct: 176 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234

Query: 203 RFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDD 262
           R + FS  G  +  +     +  +   +    +    +    H +         +  V  
Sbjct: 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294

Query: 263 A-----GLYVLAISETGVCYIW---YGQNIEELR-NTKATKILSSSEDVNSKSQKSATAA 313
                 G  + +    G    W     + I  L  +    +I      V+      A   
Sbjct: 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

Query: 314 IFAAKL 319
           +F  K 
Sbjct: 355 VFDVKF 360

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 94  GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLG 153
             G + A  ++ G+ KW   +        +   T G  ++ A  DG +  +D   G  L 
Sbjct: 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TKGGLVWYATLDGYLKALDNKDGKELW 499

Query: 154 KFRASTKGISC-MAVSSDGK-MLATAAG 179
            F+  + GI   M  S  GK  + +  G
Sbjct: 500 NFKMPSGGIGSPMTYSFKGKQYIGSMYG 527

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

 Score = 44.2 bits (103), Expect = 3e-05
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 92  GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL 151
               G +LA      +  W++   +P   +  + +T G+ ++   A G +       G  
Sbjct: 434 AVVSGALLAWDPVKQKAAWKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491

Query: 152 LGKFRASTKGIS-CMAVSSDGK-MLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSD 209
           L +F A +  ++  M     G+  +A  AG       +   +     G     R + F+ 
Sbjct: 492 LWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGG-ESMNLPGMKNRSRLLVFAL 550

Query: 210 NGK 212
           +GK
Sbjct: 551 DGK 553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 37/219 (16%), Positives = 60/219 (27%), Gaps = 29/219 (13%)

Query: 22  ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK 81
           IC                + E   +        +   +      + Y   ++        
Sbjct: 385 ICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM------LPYKAGQFFVGATLNM 438

Query: 82  RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMV 141
                       G G + A     G  KW   +        ++  T G  ++    DG +
Sbjct: 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAGDLVFYGTLDGYL 496

Query: 142 CEIDPLTGSLLGKFRASTKGISC-MAVSSDGK-MLATAAG----------------QLKT 183
              D  TG LL KF+  +  I   M  +  G   +A   G                    
Sbjct: 497 KARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGL 556

Query: 184 FNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS-AVGE 221
                 KK+  ++   G V  + FS +GK       VGE
Sbjct: 557 GAVGAFKKLANYTQMGGGV--VVFSLDGKGPYDDPNVGE 593

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 13/173 (7%), Positives = 37/173 (21%), Gaps = 3/173 (1%)

Query: 111 RLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS---TKGISCMAV 167
           ++       +S I      S +     DG +        +       S      + C   
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 168 SSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALW 227
             +  +              D      F         +      KY     +   +  L 
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY 280
                +      +      +     +        ++   ++ ++ + V +   
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLA 175
               V++I F+     +Y+AG+DG++   +  T   +  F       S + ++    +L 
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILC 308

Query: 176 TAAG--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN 210
            A      KT    D    Q    +  ++  +   +N
Sbjct: 309 LATSDDTFKTNAAID----QTIELNASSIYIIFDYEN 341

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 7/70 (10%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 190 KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVF 249
           + +Q        +  +    +   +L ++  +  + +++ D  + ++   + ++ +    
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITS-WDGSLTVYKFDI-QAKNVDLLQSLRYKHPL 59

Query: 250 MDCRCIDNGG 259
           + C  IDN  
Sbjct: 60  LCCNFIDNTD 69

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 34/290 (11%), Positives = 72/290 (24%), Gaps = 22/290 (7%)

Query: 3   SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
           S   + +                D  IKIWD    + +        +     Y  R+   
Sbjct: 12  SETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70

Query: 63  HLSVDYTCMKWLSVDRKKKRKL-------------GSSLLVLGTGGGDVLALAVSAGQLK 109
             S     +  ++        +             G  +         V  +A       
Sbjct: 71  GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 130

Query: 110 WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSS 169
            R+   H   V+ + F        S   D  +   +  T   +       +GI+C+    
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188

Query: 170 DGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT 229
              +  ++   ++ ++      ++   GH      +         + S   +  I +W  
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRCIRFDNKRIVSGAYDGKIKVWDL 245

Query: 230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIW 279
                  A          V    R      +      +++ S      IW
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIW 292

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 5/109 (4%)

Query: 149 GSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-GHPGAVRFM 205
           GS+        K I+ ++ S+DGK L +A   G + +++ S     + F   H   +  +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 206 TFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRC 254
             +  G     S   + ++ +    G    S+  V              
Sbjct: 62  KTTSKGDLFTVS--WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 108

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 116 HPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-ASTKGISCMAV 167
           H   ++A+S +  G  ++SA A+G +   D  TG     F       I+ +  
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 2/78 (2%)

Query: 3  SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLERE 62
          +  I  +  S S           +  I  WD   G     F D+ +T  T +        
Sbjct: 12 NKAITAL--SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69

Query: 63 HLSVDYTCMKWLSVDRKK 80
                  +K +      
Sbjct: 70 FTVSWDDHLKVVPAGGSG 87

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 30/238 (12%), Positives = 57/238 (23%), Gaps = 35/238 (14%)

Query: 13  FSPALDYFAICSGDARIKIWD--TLKGQVQTEFA------DIASTETTSLYGNRLEREHL 64
            S +  Y  +   D ++ + D    +     E         I +++              
Sbjct: 69  LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA----- 123

Query: 65  SVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAIS 124
                   W         +      +  T G                +   H        
Sbjct: 124 ---IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE---- 176

Query: 125 FATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST-KGISCMAVSSDGKMLATAAGQLKT 183
                  I +    G +  +D    + L     S  + +    +    +   TAA     
Sbjct: 177 ------FIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 184 FNCSDHKKMQK--------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK 233
               D K+ +          + HPG          G    +S +G+  +AL  TD   
Sbjct: 231 LVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.98
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.65
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.59
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.24
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.15
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.93
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.5
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.41
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.4
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.07
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.07
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.98
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.26
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.07
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.84
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.54
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.44
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.04
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.58
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.31
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.24
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.0
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.95
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.92
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.63
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	88.62

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-37  Score=300.90  Aligned_cols=277  Identities=14%  Similarity=0.205  Sum_probs=230.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEE-----EeccccccccccccccccccccccCccceEEeeec
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQT-----EFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ++.+|  .+++|||+|++||+|+ ||.|+|||+.++....     ....|.                  ..+.+++|.+.
T Consensus        50 H~~~V--~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~------------------~~I~~v~~s~d  108 (337)
T d1gxra_          50 HGEVV--CAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD------------------NYIRSCKLLPD  108 (337)
T ss_dssp             CSSCC--CEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT------------------SBEEEEEECTT
T ss_pred             CCCcE--EEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCC------------------CcEEEEEEcCC
Confidence            35788  5669999999999998 8999999997654221     112222                  24556666553


Q ss_pred             ccccccccCCcEEEEEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE
Q 008058           77 DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK  154 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  154 (579)
                               +.+|++|+.||.|++||+....  ....+ ..|...|.++.|+|++.++++++.|+.|++||+.+++....
T Consensus       109 ---------g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         109 ---------GCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             ---------SSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ---------CCEEEEeeccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence                     7889999999999999987543  33333 57899999999999999999999999999999999999999


Q ss_pred             eecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          155 FRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       155 ~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ...|...|.+++|++++..+++++  +.|++||+++++.+..+. |...|.+++|+|+++++++++ .|+.+++||++..
T Consensus       179 ~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~  256 (337)
T d1gxra_         179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKP  256 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceec-ccccccccccccc
Confidence            999999999999999999999987  899999999999887775 889999999999999999987 6999999999887


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                      +..      ....+...+..+.|+     |++++|++++.||.|++||..+++.+..                       
T Consensus       257 ~~~------~~~~~~~~i~~v~~s-----~~g~~l~s~s~Dg~i~iwd~~~~~~~~~-----------------------  302 (337)
T d1gxra_         257 DKY------QLHLHESCVLSLKFA-----YCGKWFVSTGKDNLLNAWRTPYGASIFQ-----------------------  302 (337)
T ss_dssp             CEE------EECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTCCEEEE-----------------------
T ss_pred             ccc------cccccccccceEEEC-----CCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------
Confidence            632      233445556778887     9999999999999999999876643211                       


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                       ..|...|.+++|+|||++| ++||.|+++++|++
T Consensus       303 ---------------------------------~~~~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl  335 (337)
T d1gxra_         303 ---------------------------------SKESSSVLSCDISVDDKYI-VTGSGDKKATVYEV  335 (337)
T ss_dssp             ---------------------------------EECSSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred             ---------------------------------ccCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence                                             1356689999999999999 99999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.7e-36  Score=299.51  Aligned_cols=304  Identities=14%  Similarity=0.192  Sum_probs=230.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .|++|||||++||+|+ |++|+|||+.+++.+..+..+.....................+.+++|.+.     
T Consensus        61 H~~~V--~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-----  132 (388)
T d1erja_          61 HTSVV--CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-----  132 (388)
T ss_dssp             CSSCC--CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-----
T ss_pred             CCCcE--EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-----
Confidence            45789  5559999999999987 899999999999999888766543322211111011122445778888764     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+|++|+.||.|++||...++.+... .+|...|.++.|++++..+++++.++.+++||..+.........+...
T Consensus       133 ----~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  207 (388)
T d1erja_         133 ----GKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV  207 (388)
T ss_dssp             ----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             ----CCcceeccccccccccccccccccccc-ccccccccccccccccccccccccceeeeeeecccccccccccccccc
Confidence                788999999999999999999988666 679999999999999999999999999999999988888777755555


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe-------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF-------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      +....+.+++++|++++  |.|++||.+++..+..+       .+|...|.++.|+|++++|++++ .|+.|++||++..
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~  286 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNA  286 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC---
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE-CCCcEEEEeccCC
Confidence            44444445889999887  89999999998776654       46889999999999999999988 7999999999876


Q ss_pred             cccc-------ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          233 KKQS-------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      ....       ..+......+...+..+.|+     |++++|++|+.||.|++||+++++.+..                
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------  345 (388)
T d1erja_         287 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-----QNDEYILSGSKDRGVLFWDKKSGNPLLM----------------  345 (388)
T ss_dssp             ------------CEEEEEECCSSCEEEEEEC-----GGGCEEEEEETTSEEEEEETTTCCEEEE----------------
T ss_pred             ccccccccccccceeeecccccceEEEEEEC-----CCCCEEEEEeCCCEEEEEECCCCcEEEE----------------
Confidence            5321       11233334455566777887     8999999999999999999887765432                


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEe------ecCCcceeeccccceecccceee
Q 008058          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLN------CSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~------~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                             +.+|.+.|.+++      |+|||.+| +|||.|++|++|++
T Consensus       346 ---------------------------------------l~~H~~~V~~~~~~~~~~~spd~~~l-~s~s~Dg~I~iW~~  385 (388)
T d1erja_         346 ---------------------------------------LQGHRNSVISVAVANGSSLGPEYNVF-ATGSGDCKARIWKY  385 (388)
T ss_dssp             ---------------------------------------EECCSSCEEEEEECSSCTTCTTCEEE-EEEETTSEEEEEEE
T ss_pred             ---------------------------------------EeCCCCCEEEEEEecCcccCCCCCEE-EEEeCCCEEEEEee
Confidence                                                   234555555543      67899999 99999999999998


Q ss_pred             e
Q 008058          380 Q  380 (579)
Q Consensus       380 ~  380 (579)
                      +
T Consensus       386 ~  386 (388)
T d1erja_         386 K  386 (388)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-36  Score=290.68  Aligned_cols=280  Identities=15%  Similarity=0.262  Sum_probs=244.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|++++||+|+.||+|+|||+.+++++.+++.|...+..+.++++                       
T Consensus        16 H~~~I--~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-----------------------   70 (317)
T d1vyhc1          16 HRSPV--TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-----------------------   70 (317)
T ss_dssp             CSSCE--EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-----------------------
T ss_pred             CCCCe--EEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-----------------------
Confidence            46789  55599999999999999999999999999999999877766655555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +.+++.+..++.+..|+....+....+ .+|...+.++.|+|+++.+++++.|+.+++||+++++.+..+.+|...
T Consensus        71 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          71 ----GKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             ----SSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ----ccccccccccccccccccccccccccc-ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc
Confidence                788999999999999999988876554 679999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCC--------------------CEEEEEec
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNG--------------------KYVLSSAV  219 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~--------------------~~l~s~s~  219 (579)
                      +.+++|+|+++++++++  +.|++|+..+++.+..+.+|...+.++.|+|++                    .++++++ 
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  224 (317)
T d1vyhc1         146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-  224 (317)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE-
T ss_pred             ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc-
Confidence            99999999999999987  899999999999999999999999999998753                    4577776 


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeee
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSS  299 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  299 (579)
                      .|+.|++|++++++     ++..+..+...+..+.++     |++.+|++++.||.|++||+++++.+.           
T Consensus       225 ~d~~i~~~~~~~~~-----~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------  283 (317)
T d1vyhc1         225 RDKTIKMWDVSTGM-----CLMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKNKRCMK-----------  283 (317)
T ss_dssp             TTSEEEEEETTTTE-----EEEEEECCSSCEEEEEEC-----SSSSCEEEEETTTEEEEECCTTSCCCE-----------
T ss_pred             CCCEEEEEECCCCc-----EEEEEeCCCCCEEEEEEC-----CCCCEEEEEECCCeEEEEECCCCcEEE-----------
Confidence            79999999999876     335555666677788887     999999999999999999986654321           


Q ss_pred             cccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          300 EDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       300 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                                  .+.+|...|++++|+|||.+| +|||.|++|++|+
T Consensus       284 --------------------------------------------~~~~h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 --------------------------------------------TLNAHEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE  317 (317)
T ss_dssp             --------------------------------------------EEECCSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred             --------------------------------------------EEcCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEeC
Confidence                                                        344688899999999999999 9999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-34  Score=280.46  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=205.0

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ++++++|+|+.||.++ ++.|.+||+.++.....+.+|...+.++.|+++                           +++
T Consensus        21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~---------------------------g~~   72 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS---------------------------GYY   72 (311)
T ss_dssp             CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTT---------------------------SSE
T ss_pred             EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC---------------------------CCe
Confidence            4569999999999986 567999999999888888877666655555554                           889


Q ss_pred             EEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      |++|+.||.|++||+.++... .....+|.++|.+++|+|+++++++++.  +..+++|++.+++...++.+|...|+++
T Consensus        73 latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v  152 (311)
T d1nr0a1          73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSV  152 (311)
T ss_dssp             EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEE
T ss_pred             EeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999987643 2334679999999999999999999885  4569999999999999999999999999


Q ss_pred             EEccCCCE-EEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEe
Q 008058          166 AVSSDGKM-LATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       166 ~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +|+|++++ +++|+  +.|++||+++++....+.+|..+|+++.|+|+++++++++ .|+.|++||...+...   ..+.
T Consensus       153 ~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~---~~~~  228 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKT---GVFE  228 (311)
T ss_dssp             EECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEE---EECB
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccCcccccccccc-cccccccccccccccc---cccc
Confidence            99999985 66665  8999999999999999999999999999999999999988 6999999999887533   1111


Q ss_pred             -----eecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          243 -----MEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       243 -----~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                           ...+...+.++.|+     |++++|++|+.||.|+|||+++++.++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s-----~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWS-----PDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEEC-----TTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccC-----CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence                 11234456778887     999999999999999999998887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-33  Score=275.34  Aligned_cols=282  Identities=15%  Similarity=0.181  Sum_probs=235.4

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|++++||+|+.||+|+|||+.+++.+..+..|...+..+.|+++                       
T Consensus        54 H~~~I--~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-----------------------  108 (340)
T d1tbga_          54 HLAKI--YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-----------------------  108 (340)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-----------------------
T ss_pred             CCCCE--EEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-----------------------
Confidence            46789  55699999999999999999999999999999999877766665555544                       


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE---EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQL---KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                          +.++++|+.++.+.+|+......   ......+|..........+ +..+.....|.....++............+
T Consensus       109 ----~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         109 ----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             ----SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECC
T ss_pred             ----ceeeeeecccceeecccccccccccccceeccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                88899999999999999876532   1223356777666665554 557788889999999998888777777778


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQS  236 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~  236 (579)
                      ...+....+.+.+.++++++  +.|++||+++++++.++.+|..+|++++|+|++++|++++ .|+.|++|+++..... 
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s-~d~~i~~~~~~~~~~~-  261 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS-DDATCRLFDLRADQEL-  261 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE-
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeecccccc-
Confidence            88999999999999999887  8999999999999999999999999999999999999988 7999999999887643 


Q ss_pred             ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhh
Q 008058          237 ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFA  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  316 (579)
                        .......+...+..+.|+     |++.+|++|+.||.|++||+.+++.+.                            
T Consensus       262 --~~~~~~~~~~~i~~~~~s-----~~~~~l~~g~~dg~i~iwd~~~~~~~~----------------------------  306 (340)
T d1tbga_         262 --MTYSHDNIICGITSVSFS-----KSGRLLLAGYDDFNCNVWDALKADRAG----------------------------  306 (340)
T ss_dssp             --EEECCTTCCSCEEEEEEC-----SSSCEEEEEETTSCEEEEETTTCCEEE----------------------------
T ss_pred             --cccccccccCceEEEEEC-----CCCCEEEEEECCCEEEEEECCCCcEEE----------------------------
Confidence              233334555557778887     999999999999999999987654321                            


Q ss_pred             ccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          317 AKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                                 .+.+|..+|.+++|+|||.+| +|||.|+++++|+
T Consensus       307 ---------------------------~~~~H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 ---------------------------VLAGHDNRVSCLGVTDDGMAV-ATGSWDSFLKIWN  340 (340)
T ss_dssp             ---------------------------EECCCSSCEEEEEECTTSSCE-EEEETTSCEEEEC
T ss_pred             ---------------------------EEcCCCCCEEEEEEeCCCCEE-EEEccCCEEEEeC
Confidence                                       344788899999999999999 9999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.8e-35  Score=290.41  Aligned_cols=322  Identities=11%  Similarity=0.027  Sum_probs=225.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe--EEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ--VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ..||  .|++|||||++||+|+.||.|+|||..+++  ++..+++|..++.++.|+++                      
T Consensus         7 ~~pI--t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~----------------------   62 (371)
T d1k8kc_           7 VEPI--SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD----------------------   62 (371)
T ss_dssp             SSCC--CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT----------------------
T ss_pred             CCCe--EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC----------------------
Confidence            4689  555999999999999999999999998776  55667766665555555444                      


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEE-ecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee----eEe
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWR-LSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLL----GKF  155 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~  155 (579)
                           +++|++|+.|+.|++||+.++..... ...+|...|++++|+|+++.|++++.|+++++|++......    ...
T Consensus        63 -----~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~  137 (371)
T d1k8kc_          63 -----SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK  137 (371)
T ss_dssp             -----TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred             -----CCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccc
Confidence                 78899999999999999998775433 23578899999999999999999999999999998765432    334


Q ss_pred             ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCC------------------eeeEEeecCCCCEEEEEEecCCCEEE
Q 008058          156 RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDH------------------KKMQKFSGHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~------------------~~~~~~~~h~~~v~~l~~~~~~~~l~  215 (579)
                      ..|...|.+++|+|++++|++|+  +.|++||....                  +.+....+|...|.+++|+|++++++
T Consensus       138 ~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  217 (371)
T d1k8kc_         138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  217 (371)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc
Confidence            56788999999999999999987  99999998542                  34566778999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceE
Q 008058          216 SSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKI  295 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  295 (579)
                      +++ .|+.|++||+..+..     +..+..+...+..+.|+     |++.+|++| .|+.+++|..+.............
T Consensus       218 s~~-~d~~i~iwd~~~~~~-----~~~~~~~~~~v~s~~fs-----~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~  285 (371)
T d1k8kc_         218 WVS-HDSTVCLADADKKMA-----VATLASETLPLLAVTFI-----TESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLD  285 (371)
T ss_dssp             EEE-TTTEEEEEEGGGTTE-----EEEEECSSCCEEEEEEE-----ETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCC
T ss_pred             ccc-cCCcceEEeeecccc-----eeeeecccccceeeeec-----CCCCEEEEE-cCCceEEEEeeCCCceEEEeeeec
Confidence            988 699999999987653     34555566667778887     888877765 477777765443321111110000


Q ss_pred             EeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc----eeeccccce
Q 008058          296 LSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV----LLPMSQSLL  371 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~----~l~~s~s~d  371 (579)
                       ....  ..............  .+.....        .+.. .........|.+.|.++++.+++.    .+ +|+|.|
T Consensus       286 -~~~~--~~~~~~~~~~~~~~--~~~~~~~--------~~~~-~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~-~T~g~D  350 (371)
T d1k8kc_         286 -VPKQ--SSQRGLTARERFQN--LDKKASS--------EGSA-AAGAGLDSLHKNSVSQISVLSGGKAKCSQF-CTTGMD  350 (371)
T ss_dssp             -CC----------CHHHHHHH--CCCCC------------------CCCSSSSSSCEEEEEEEESTTTSCSEE-EEEETT
T ss_pred             -Cccc--cccccccceeeEec--ccceeEE--------eccc-cccceecccccCCEEEEEEeCCCCcceEEE-EEEcCC
Confidence             0000  00000000000000  0100000        0000 000001135999999999987653    36 899999


Q ss_pred             ecccceeee
Q 008058          372 KSKRGRYVQ  380 (579)
Q Consensus       372 ~~~~~w~~~  380 (579)
                      +.+++|++.
T Consensus       351 g~v~iW~~~  359 (371)
T d1k8kc_         351 GGMSIWDVR  359 (371)
T ss_dssp             SEEEEEEHH
T ss_pred             CeEEEEeCC
Confidence            999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-33  Score=271.11  Aligned_cols=240  Identities=19%  Similarity=0.234  Sum_probs=194.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEE--EEeccccccccccccccccccccccCccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQ--TEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      ++.+|  .+++|+|||++||+|+.||+|+|||+.++...  ..+..|...+                  .+++|.+.   
T Consensus        57 H~~~v--~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v------------------~~v~~s~d---  113 (311)
T d1nr0a1          57 HSHQT--TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV------------------KDISWDSE---  113 (311)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE------------------EEEEECTT---
T ss_pred             CCCCE--EEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcc------------------cccccccc---
Confidence            35678  66699999999999999999999999887643  4455444444                  45555443   


Q ss_pred             cccccCCcEEEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee
Q 008058           80 KKRKLGSSLLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~  156 (579)
                            +.++++++.+.  .+++|+..+++....+ .+|...|++++|+|++++ |++|+.||.|++||+++++....+.
T Consensus       114 ------~~~l~~~~~~~~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~  186 (311)
T d1nr0a1         114 ------SKRIAAVGEGRERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG  186 (311)
T ss_dssp             ------SCEEEEEECCSSCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC
T ss_pred             ------ccccccccccccccccccccccccccccc-cccccccccccccccceeeecccccccccccccccccccccccc
Confidence                  67788888654  4999999998887555 689999999999999986 8889999999999999999999999


Q ss_pred             cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEee-------cCCCCEEEEEEecCCCEEEEEecCCCeEEEE
Q 008058          157 ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFS-------GHPGAVRFMTFSDNGKYVLSSAVGERYIALW  227 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vw  227 (579)
                      .|..+|+++.|+|+++++++++  +.|++||..+++.+..+.       +|.+.|++++|+|++++|++++ .||.|++|
T Consensus       187 ~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~iw  265 (311)
T d1nr0a1         187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADKTIKIW  265 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTSEEEEE
T ss_pred             cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCCeEEEE
Confidence            9999999999999999999987  899999999988777663       6889999999999999999988 69999999


Q ss_pred             EcCCCccccceeEEeeecCce-eeEeEEecCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          228 RTDGVKKQSASCVLAMEHPAV-FMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      |+++++..     ..+..+.. ......+.     +++.+|++++.||.|++||.+
T Consensus       266 d~~t~~~~-----~~l~~~~~~~~~~~~~~-----~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         266 NVATLKVE-----KTIPVGTRIEDQQLGII-----WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             ETTTTEEE-----EEEECCSSGGGCEEEEE-----ECSSCEEEEETTCCEEEEETT
T ss_pred             ECCCCcEE-----EEEECCCCccceEEEEE-----ecCCEEEEEECCCEEEEEeCC
Confidence            99987643     33332221 11222333     466789999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.1e-32  Score=259.95  Aligned_cols=281  Identities=13%  Similarity=0.115  Sum_probs=209.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEec-cccccccccccccccccccccCccceEEeeeccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFA-DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      +.++|  .+++|+|||++|++|+.||+|++||+.++++...+. .|.                  ..++++.|.+.    
T Consensus        11 H~~~V--~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~------------------~~v~~v~~~~~----   66 (299)
T d1nr0a2          11 HNKAI--TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA------------------TMITGIKTTSK----   66 (299)
T ss_dssp             CSSCE--EEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS------------------SCEEEEEECTT----
T ss_pred             CCCCc--EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCC------------------CcEEEEEeecc----
Confidence            46789  556999999999999999999999999999887664 233                  24456666542    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEE--EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLK--WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS  158 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~  158 (579)
                           +. +++++.|+.+++|+.......  ......+...+.+++|+|+|+.++++ .++.+++|+..  +.....  .
T Consensus        67 -----g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          67 -----GD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             -----SC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             -----ce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccc-ccccccccccc--cccccc--c
Confidence                 33 677888999999998754321  11223467889999999999877666 46789999953  333222  3


Q ss_pred             CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          159 TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ...+.+++|+|+++++++|+  |.|++||+++++... ....|...|++++|+|+++++++++ .|+.|++||+.++...
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFEL  214 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            44678999999999999987  899999998877543 3457899999999999999999987 7999999999876533


Q ss_pred             cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhh
Q 008058          236 SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIF  315 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  315 (579)
                      .  ....+..+...+.++.|+     |++.+|++|+.||.|++||++++......                         
T Consensus       215 ~--~~~~~~~h~~~v~~l~~s-----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-------------------------  262 (299)
T d1nr0a2         215 A--HTNSWTFHTAKVACVSWS-----PDNVRLATGSLDNSVIVWNMNKPSDHPII-------------------------  262 (299)
T ss_dssp             S--CCCCCCCCSSCEEEEEEC-----TTSSEEEEEETTSCEEEEETTCTTSCCEE-------------------------
T ss_pred             c--cccccccccccccccccc-----ccccceEEEcCCCEEEEEECCCCCcceEE-------------------------
Confidence            1  222334455667778887     99999999999999999998765321100                         


Q ss_pred             hccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          316 AAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                  ....|........+++++.+| +|+|.|+++++|++
T Consensus       263 ----------------------------~~~~~~~~~v~~~~~~~~~~l-~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         263 ----------------------------IKGAHAMSSVNSVIWLNETTI-VSAGQDSNIKFWNV  297 (299)
T ss_dssp             ----------------------------ETTSSTTSCEEEEEEEETTEE-EEEETTSCEEEEEC
T ss_pred             ----------------------------EecCCCCCcEEEEEECCCCEE-EEEeCCCEEEEEec
Confidence                                        000222233444456677888 89999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-31  Score=259.93  Aligned_cols=235  Identities=17%  Similarity=0.237  Sum_probs=198.1

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      .++|  .+++|+|||++|++|+.||+|++||+...  +....+..|...+.                  ++.|.+.    
T Consensus        97 ~~~I--~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~------------------~~~~~~~----  152 (337)
T d1gxra_          97 DNYI--RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY------------------ALAISPD----  152 (337)
T ss_dssp             TSBE--EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE------------------EEEECTT----
T ss_pred             CCcE--EEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc------------------ccccccc----
Confidence            4567  56699999999999999999999998744  44555555444443                  3334332    


Q ss_pred             ccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC
Q 008058           81 KRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        81 ~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                           +..+++++.++.|++|++.+++..... .+|...|++++|++++..+++++.|+.|++||+++++.+..+. +..
T Consensus       153 -----~~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~  225 (337)
T d1gxra_         153 -----SKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTS  225 (337)
T ss_dssp             -----SSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             -----ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccceeecccc-ccc
Confidence                 778999999999999999999887655 5799999999999999999999999999999999999888776 788


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS  238 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~  238 (579)
                      .|.+++|+|+++++++++  +.+++||+++++.. ....|...|++++|+|++++|++++ .|+.|++||+.+++..   
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s-~Dg~i~iwd~~~~~~~---  300 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASI---  300 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE---
T ss_pred             ceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEe-CCCeEEEEECCCCCEE---
Confidence            999999999999999987  89999999988765 4567999999999999999999988 7999999999987633   


Q ss_pred             eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          239 CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                        ....+.. .+..+.|+     |++++|++|+.||+|+|||+
T Consensus       301 --~~~~~~~-~v~~~~~s-----~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         301 --FQSKESS-SVLSCDIS-----VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --EEEECSS-CEEEEEEC-----TTSCEEEEEETTSCEEEEEE
T ss_pred             --EEccCCC-CEEEEEEe-----CCCCEEEEEeCCCeEEEEEE
Confidence              4555554 45567787     99999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.3e-30  Score=254.74  Aligned_cols=308  Identities=12%  Similarity=0.148  Sum_probs=223.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      +++++|++||+|+.||+|+|||+.+++++.++++|...+.                  +++|.+          +..|++
T Consensus        18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~------------------~l~~s~----------~~~l~s   69 (355)
T d1nexb2          18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW------------------ALKYAH----------GGILVS   69 (355)
T ss_dssp             EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE------------------EEEEET----------TTEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE------------------EEEEcC----------CCEEEE
Confidence            3566789999999999999999999999999987766555                  444432          457999


Q ss_pred             EECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe---------------
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF---------------  155 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---------------  155 (579)
                      |+.||.|++|+....+....... .+...+....+.+++.++++++.|+.|++||+.++......               
T Consensus        70 ~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             EecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            99999999999999887655533 23344566778889999999999999999999866433221               


Q ss_pred             --------ecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          156 --------RASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       156 --------~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                              ..|...+  ..+.+++++++++.  +.|++||+++++.+..+.++...+.++.|+|++.++++++ .|+.|+
T Consensus       150 ~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~  226 (355)
T d1nexb2         150 NPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIR  226 (355)
T ss_dssp             CTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEE
T ss_pred             ccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccc-ccceEE
Confidence                    1222222  34556788888887  8999999999999999999999999999999999999988 799999


Q ss_pred             EEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcc
Q 008058          226 LWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSK  305 (579)
Q Consensus       226 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  305 (579)
                      +||++++..     +..+..+...+.++.+       ++++|++++.||.|++||++++..........  +.....+++
T Consensus       227 i~d~~~~~~-----~~~~~~h~~~v~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~  292 (355)
T d1nexb2         227 IWDLENGEL-----MYTLQGHTALVGLLRL-------SDKFLVSAAADGSIRGWDANDYSRKFSYHHTN--LSAITTFYV  292 (355)
T ss_dssp             EEETTTCCE-----EEEECCCSSCCCEEEE-------CSSEEEEECTTSEEEEEETTTCCEEEEEECTT--CCCCCEEEE
T ss_pred             eeecccccc-----cccccccccccccccc-------ccceeeeeecccccccccccccceecccccCC--ceEEEEEcC
Confidence            999998763     3445555556666666       35799999999999999998876543221111  111111233


Q ss_pred             cccccchhhhhccccceecCCceEEEEEeCCCCCcee-EEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          306 SQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSF-QKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       306 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                      +++    .+ +++.|+.++.|+        ....... ..+.+|...|.+++|+|+. ++ ++++.|+.+++|-.
T Consensus       293 ~~~----~l-~~g~d~~i~vwd--------~~tg~~~~~~~~~~~~~V~~v~~~~~~-~~-~~~s~dg~~~l~~~  352 (355)
T d1nexb2         293 SDN----IL-VSGSENQFNIYN--------LRSGKLVHANILKDADQIWSVNFKGKT-LV-AAVEKDGQSFLEIL  352 (355)
T ss_dssp             CSS----EE-EEEETTEEEEEE--------TTTCCBCCSCTTTTCSEEEEEEEETTE-EE-EEEESSSCEEEEEE
T ss_pred             CCC----EE-EEEeCCEEEEEE--------CCCCCEEEEEecCCCCCEEEEEEcCCe-EE-EEEECCCcEEEEEE
Confidence            333    44 444566665543        1111222 2345788899999999974 56 88899999888765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.9e-29  Score=242.21  Aligned_cols=310  Identities=13%  Similarity=0.141  Sum_probs=229.0

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +.+|  ++ +++++|++||||+.||+|+|||+.+++++..+.+|...+..                  +.|.        
T Consensus        16 ~~~V--~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~------------------v~~~--------   66 (342)
T d2ovrb2          16 DDHV--IT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS------------------SQMR--------   66 (342)
T ss_dssp             TTSC--EE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEE------------------EEEE--------
T ss_pred             CCce--EE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEE------------------EEeC--------
Confidence            4566  54 47788999999999999999999999999999877655543                  3332        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +.++++|+.|+.+++|+.......... ..+...+....+.  +..+..+..|+.+.+|+..+++....+..+....
T Consensus        67 ---~~~l~s~s~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  140 (342)
T d2ovrb2          67 ---DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV  140 (342)
T ss_dssp             ---TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred             ---CCccccceecccccccccccccceecc-cccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccc
Confidence               457999999999999999988876555 3455666666553  4578889999999999999998887776554433


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeE
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCV  240 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~  240 (579)
                      .  ...+....++.++  +.|++||....+.+..+.+|...+..+  .+++.++++++ .|+.|++||++.++.     +
T Consensus       141 ~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~-~dg~i~~~d~~~~~~-----~  210 (342)
T d2ovrb2         141 R--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS-LDTSIRVWDVETGNC-----I  210 (342)
T ss_dssp             E--EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEE-TTSCEEEEETTTCCE-----E
T ss_pred             e--eeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEe-CCCeEEEeeccccee-----e
Confidence            3  3334455666655  999999999999999999998776655  45688999988 799999999988763     3


Q ss_pred             EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCc---eEEeeecccCcccccccchhhhhc
Q 008058          241 LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKAT---KILSSSEDVNSKSQKSATAAIFAA  317 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~  317 (579)
                      .....+...+.++.+       ++++|++++.||.|++||....+........   ...+.+   +..++.    .+++|
T Consensus       211 ~~~~~~~~~v~~~~~-------~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~s~  276 (342)
T d2ovrb2         211 HTLTGHQSLTSGMEL-------KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC---LQFNKN----FVITS  276 (342)
T ss_dssp             EEECCCCSCEEEEEE-------ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE---EEECSS----EEEEE
T ss_pred             eEecccccceeEEec-------CCCEEEEEcCCCEEEEEecccccccccccccceeeeceee---cccCCC----eeEEE
Confidence            444555555555554       4579999999999999999887765443322   111111   122333    78899


Q ss_pred             cccceecCCceEEEEEeCCCCCceeEEE-----ecCCCCcEEEeecCCcceeeccccceec----ccceeee
Q 008058          318 KLQDIVKPASVHTFVAYGLLLKPSFQKI-----LVNSGEDINLNCSQDGVLLPMSQSLLKS----KRGRYVQ  380 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~h~~~v~~~~~s~dg~~l~~s~s~d~~----~~~w~~~  380 (579)
                      +.||.++.|+        .......+++     .+|...|.+++|+|+|.++ ++|+.|++    +++|++.
T Consensus       277 s~Dg~i~iwd--------~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~l-a~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         277 SDDGTVKLWD--------LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC-AVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             ETTSEEEEEE--------TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEE-EEECSSSSSCCEEEEEECC
T ss_pred             cCCCEEEEEE--------CCCCCEEEEEecccCCCCCCCEEEEEECCCCCEE-EEEeCCCCCeeEEEEEeCC
Confidence            9888777654        2222333333     2577789999999999999 99998986    7888873

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-29  Score=248.87  Aligned_cols=242  Identities=19%  Similarity=0.271  Sum_probs=193.1

Q ss_pred             CcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058            4 SNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         4 ~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..|  .+++|+|+|++|++|+.||.|++||...++....+.+|...+....++++                         
T Consensus       122 ~~V--~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------------------  174 (388)
T d1erja_         122 LYI--RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-------------------------  174 (388)
T ss_dssp             CBE--EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-------------------------
T ss_pred             CCE--EEEEECCCCCcceecccccccccccccccccccccccccccccccccccc-------------------------
Confidence            457  45699999999999999999999999999999888777665554444443                         


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCceeeEee------
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFA-THGSCIYSAGADGMVCEIDPLTGSLLGKFR------  156 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------  156 (579)
                        +..+++++.+|.|++||..+....... ..+ ....++.++ +++++|++++.||.|++||..++.....+.      
T Consensus       175 --~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~  250 (388)
T d1erja_         175 --GDKLVSGSGDRTVRIWDLRTGQCSLTL-SIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG  250 (388)
T ss_dssp             --SSEEEEEETTSEEEEEETTTTEEEEEE-ECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------
T ss_pred             --cccccccccceeeeeeecccccccccc-ccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccc
Confidence              778999999999999999998877555 334 445555555 488999999999999999999988766543      


Q ss_pred             -cCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCe------------eeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          157 -ASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHK------------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       157 -~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~------------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                       +|...|.+++|+|++++|++++  |.|++||+++++            .......|...|.+++|+|++++|++++ .|
T Consensus       251 ~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~d  329 (388)
T d1erja_         251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KD  329 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TT
T ss_pred             cCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe-CC
Confidence             5778999999999999999987  899999997653            2445567899999999999999999988 79


Q ss_pred             CeEEEEEcCCCccccceeEEeeecCceeeEeEEe-cCCcccCCCcEEEEEEcCCeEEEEECC
Q 008058          222 RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI-DNGGVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       222 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                      |.|++||+++++.     +..+..+...+..+.+ ....++|++.+|++|+.||+|+||+++
T Consensus       330 g~i~vwd~~~~~~-----~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         330 RGVLFWDKKSGNP-----LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SEEEEEETTTCCE-----EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEECCCCcE-----EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            9999999998764     3455544444444444 334566999999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-30  Score=249.54  Aligned_cols=248  Identities=17%  Similarity=0.189  Sum_probs=185.8

Q ss_pred             eEEEEccCCCEEEEEeCCC-cEEEEECCCC--eEEEEeccccccccccccccccccccccCccceEEeeecccccccccC
Q 008058            9 ILTSFSPALDYFAICSGDA-RIKIWDTLKG--QVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLG   85 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~   85 (579)
                      .+++|+|+|+.||+++.+. .|+.|+....  .....+.                 +|....+++++|.|..       +
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-----------------gh~~~~v~~v~fsP~~-------~   76 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-----------------GHGSSVVTTVKFSPIK-------G   76 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-----------------TTTTSCEEEEEECSST-------T
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-----------------CCCCCCEEEEEEeeCC-------C
Confidence            4569999999999987654 3455654332  2233443                 5555667788887642       1


Q ss_pred             CcEEEEEECCCeEEEEEccCCeEE-------EEecCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCceeeEee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLK-------WRLSDCHPGGVSAISFATHGSCIYSAGA--DGMVCEIDPLTGSLLGKFR  156 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~-------~~~~~~h~~~V~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~  156 (579)
                      +.+|++|+.||+|++||+..++..       ......|.++|.+++|+++++++++++.  ++.+++|+..+++.+..+.
T Consensus        77 g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (325)
T d1pgua1          77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS  156 (325)
T ss_dssp             CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC
T ss_pred             CCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee
Confidence            678999999999999999764321       1122468899999999999999887764  6789999999999999999


Q ss_pred             cCCCCeeEEEEccCCCE-EEEEC--CeEEEEECCCCeeeEEe---ecCCCCEEEEEEecC-CCEEEEEecCCCeEEEEEc
Q 008058          157 ASTKGISCMAVSSDGKM-LATAA--GQLKTFNCSDHKKMQKF---SGHPGAVRFMTFSDN-GKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       157 ~~~~~v~~l~~~p~g~~-l~~~~--g~i~vwd~~~~~~~~~~---~~h~~~v~~l~~~~~-~~~l~s~s~~d~~i~vwd~  229 (579)
                      +|...|.+++|+|++++ +++++  +.+++||..+.+....+   .+|...|.+++|+|+ +.++++++ .|+.|++||+
T Consensus       157 ~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~  235 (325)
T d1pgua1         157 GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDG  235 (325)
T ss_dssp             SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEET
T ss_pred             ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc-cccceeeeee
Confidence            99999999999999875 45565  89999999988776655   456788999999997 57778777 7999999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeec
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELR  288 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  288 (579)
                      ++++..     ..+..+...+....|+..  .|+|++|++++.||.|+|||+++++.++
T Consensus       236 ~~~~~~-----~~l~~~~~~v~~~~~s~~--~~dg~~l~s~s~D~~i~iwd~~~~~~~~  287 (325)
T d1pgua1         236 KSGEFL-----KYIEDDQEPVQGGIFALS--WLDSQKFATVGADATIRVWDVTTSKCVQ  287 (325)
T ss_dssp             TTCCEE-----EECCBTTBCCCSCEEEEE--ESSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             cccccc-----ccccccccccccceeeee--ccCCCEEEEEeCCCeEEEEECCCCCEEE
Confidence            887633     334333332222222100  1689999999999999999998877654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.2e-29  Score=247.15  Aligned_cols=243  Identities=9%  Similarity=0.063  Sum_probs=194.5

Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEE-EEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLK-WRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEI  144 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iw  144 (579)
                      .+++|++|.+.         +.+|++|+.+|.|++||..+++.. ...+.+|.++|++++|+|++++|++|+.|++|++|
T Consensus         8 ~pIt~~~~s~d---------g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW   78 (371)
T d1k8kc_           8 EPISCHAWNKD---------RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   78 (371)
T ss_dssp             SCCCEEEECTT---------SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCeEEEEECCC---------CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence            35788888764         788999999999999999988642 23347899999999999999999999999999999


Q ss_pred             eCCCCcee--eEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee----eEEeecCCCCEEEEEEecCCCEEEE
Q 008058          145 DPLTGSLL--GKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK----MQKFSGHPGAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       145 d~~~~~~~--~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s  216 (579)
                      |+.++...  ..+..|...|.+++|+|+++.+++++  +.|++|++.....    .....+|...|.+++|+|++++|++
T Consensus        79 d~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             eecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            99877544  44567888999999999999999987  8999998876533    2334578999999999999999999


Q ss_pred             EecCCCeEEEEEcCCCcccc-------------ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCC
Q 008058          217 SAVGERYIALWRTDGVKKQS-------------ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQN  283 (579)
Q Consensus       217 ~s~~d~~i~vwd~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  283 (579)
                      ++ .|++|++|+........             .........+...+..++|+     |+|++|++++.||.|++||+.+
T Consensus       159 ~s-~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~g~~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         159 GS-CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-----ANGSRVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EE-TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-----SSSSEEEEEETTTEEEEEEGGG
T ss_pred             cc-cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-----cccccccccccCCcceEEeeec
Confidence            87 79999999987643210             11334444555667778887     9999999999999999999765


Q ss_pred             ceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcce
Q 008058          284 IEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVL  363 (579)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~  363 (579)
                      ++.+.                                                       .+..|..+|.+++|+|||.+
T Consensus       233 ~~~~~-------------------------------------------------------~~~~~~~~v~s~~fs~d~~~  257 (371)
T d1k8kc_         233 KMAVA-------------------------------------------------------TLASETLPLLAVTFITESSL  257 (371)
T ss_dssp             TTEEE-------------------------------------------------------EEECSSCCEEEEEEEETTEE
T ss_pred             cccee-------------------------------------------------------eeecccccceeeeecCCCCE
Confidence            43221                                                       33457778999999999999


Q ss_pred             eeccccceecccceeee
Q 008058          364 LPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       364 l~~s~s~d~~~~~w~~~  380 (579)
                      + ++|+ |+.+++|...
T Consensus       258 l-a~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         258 V-AAGH-DCFPVLFTYD  272 (371)
T ss_dssp             E-EEET-TSSCEEEEEE
T ss_pred             E-EEEc-CCceEEEEee
Confidence            8 7776 7787887764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.2e-28  Score=230.81  Aligned_cols=269  Identities=14%  Similarity=0.214  Sum_probs=204.7

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      ++++||++||+|+.||+|+|||+.+++++.++++|...+.                  ++.|.           +++|++
T Consensus        20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~------------------~v~~~-----------~~~l~s   70 (293)
T d1p22a2          20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL------------------CLQYD-----------ERVIIT   70 (293)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE------------------EEECC-----------SSEEEE
T ss_pred             EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe------------------eeecc-----------cceeec
Confidence            4567899999999999999999999999999987766554                  33331           678999


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEc
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVS  168 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~  168 (579)
                      |+.||.|++|++..+........ +...  ...+.+....++++..++.+.+||......   ...+..|...+.++.+.
T Consensus        71 ~s~D~~i~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  147 (293)
T d1p22a2          71 GSSDSTVRVWDVNTGEMLNTLIH-HCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD  147 (293)
T ss_dssp             EETTSCEEEEESSSCCEEEEECC-CCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccccc-cccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceec
Confidence            99999999999999987765532 2222  233445667899999999999999886643   34456677888888877


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++  .+++++  +.|++||.++++.+..+.+|...+..+.++  +.++++++ .|+.|++||+++.+..     .....+
T Consensus       148 ~~--~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~-----~~~~~~  217 (293)
T d1p22a2         148 DK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNTIRLWDIECGACL-----RVLEGH  217 (293)
T ss_dssp             TT--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEE-----EEECCC
T ss_pred             cc--ccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEec-CCCEEEEEecccceee-----eeeccc
Confidence            54  444444  999999999999999999999999888776  45788887 7999999999987643     333334


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCC
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  326 (579)
                      ...+..  +.     +++.+|++++.||.|++||+.+........                                   
T Consensus       218 ~~~v~~--~~-----~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-----------------------------------  255 (293)
T d1p22a2         218 EELVRC--IR-----FDNKRIVSGAYDGKIKVWDLVAALDPRAPA-----------------------------------  255 (293)
T ss_dssp             SSCEEE--EE-----CCSSEEEEEETTSCEEEEEHHHHTSTTSCT-----------------------------------
T ss_pred             ceeeee--cc-----ccceEEEEEcCCCEEEEEECCCCccccccC-----------------------------------
Confidence            433332  33     678999999999999999976543321110                                   


Q ss_pred             ceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceeccccee
Q 008058          327 SVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRY  378 (579)
Q Consensus       327 ~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~  378 (579)
                                 .....+.+.+|...|.+++|  |+.+| +|+|.|+++++||
T Consensus       256 -----------~~~~~~~~~~H~~~V~~v~~--d~~~l-~s~s~Dg~i~iWD  293 (293)
T d1p22a2         256 -----------GTLCLRTLVEHSGRVFRLQF--DEFQI-VSSSHDDTILIWD  293 (293)
T ss_dssp             -----------TTTEEEEECCCSSCCCCEEE--CSSCE-EECCSSSEEEEEC
T ss_pred             -----------CceeeEEecCCCCCEEEEEE--cCCEE-EEEecCCEEEEeC
Confidence                       11223466789999999988  56788 9999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.7e-28  Score=234.51  Aligned_cols=237  Identities=18%  Similarity=0.250  Sum_probs=206.3

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      .++|  .+++|+|++.++++++.++.+.+|+.........+..+...+....++++                        
T Consensus        59 ~~~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  112 (317)
T d1vyhc1          59 TDSV--QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN------------------------  112 (317)
T ss_dssp             SSCE--EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS------------------------
T ss_pred             CCcE--EEEeeecccccccccccccccccccccccccccccccccccceeeeccCC------------------------
Confidence            5678  55699999999999999999999999988887777655554444444433                        


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCe
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGI  162 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v  162 (579)
                         +..+++++.|+.+++||+.+++....+ .+|...+.+++|+|++++|++++.|+.|++|++.+++....+.+|...+
T Consensus       113 ---~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i  188 (317)
T d1vyhc1         113 ---GDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV  188 (317)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             ---CceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCc
Confidence               778999999999999999999887666 5799999999999999999999999999999999999999999999999


Q ss_pred             eEEEEccCC--------------------CEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecC
Q 008058          163 SCMAVSSDG--------------------KMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       163 ~~l~~~p~g--------------------~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      .+++++|++                    .++++++  +.|++||+++++++.++.+|...|.+++|+|++++|++++ .
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~  267 (317)
T d1vyhc1         189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-D  267 (317)
T ss_dssp             EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-T
T ss_pred             eEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE-C
Confidence            999998764                    3566666  8999999999999999999999999999999999999988 7


Q ss_pred             CCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          221 ERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       221 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      ||.|++||+.+++..     ..+..+...+.++.|+     |++++|++|+.||+|+|||
T Consensus       268 dg~i~iwd~~~~~~~-----~~~~~h~~~V~~~~~s-----~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCM-----KTLNAHEHFVTSLDFH-----KTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             TTEEEEECCTTSCCC-----EEEECCSSCEEEEEEC-----SSSSCEEEEETTSEEEEEC
T ss_pred             CCeEEEEECCCCcEE-----EEEcCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEeC
Confidence            999999999987644     4555566667788887     9999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.2e-28  Score=237.69  Aligned_cols=246  Identities=12%  Similarity=0.140  Sum_probs=181.9

Q ss_pred             CcccceEEEEcc--CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            4 SNIRDILTSFSP--ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         4 ~~V~~~~~~fs~--dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+|  .+++|+|  +|++||+|+.||+|+|||+..+.....+..+....    +      ......+.++.|.+.     
T Consensus        64 ~~v--~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~----~------~~~~~~v~~v~~s~~-----  126 (325)
T d1pgua1          64 SVV--TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSE----F------QVLAGPISDISWDFE-----  126 (325)
T ss_dssp             SCE--EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEE----E------ECCSSCEEEEEECTT-----
T ss_pred             CCE--EEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccc----c------ccccCcEEEEEECCC-----
Confidence            567  5669998  67899999999999999986544221111100000    0      001224556666543     


Q ss_pred             cccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEee--
Q 008058           82 RKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFR--  156 (579)
Q Consensus        82 ~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~--  156 (579)
                          +..+++++.  ++.+.+|+..+++.+..+ .+|...|++++|+|++.+ +++++.|+.+++||...++....+.  
T Consensus       127 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         127 ----GRRLCVVGEGRDNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             ----SSEEEEEECCSSCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSS
T ss_pred             ----CCccceeeccccceEEEEeecccccceee-eecccccccccccccccceEEEeecccccccccccccccceecccc
Confidence                666777665  456999999999988666 679999999999998876 7789999999999998887666543  


Q ss_pred             -cCCCCeeEEEEccC-CCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEe---cCCCEEEEEecCCCeEEEEEc
Q 008058          157 -ASTKGISCMAVSSD-GKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS---DNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       157 -~~~~~v~~l~~~p~-g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~s~s~~d~~i~vwd~  229 (579)
                       .|...|.+++|+|+ +.++++++  |.|++||+++++.+.++.+|..++..+.|+   |++++|++++ .|+.|++||+
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~iwd~  280 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRVWDV  280 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEEEET
T ss_pred             cCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEEEEC
Confidence             45678999999996 67888776  899999999999999999999888777666   7899999988 7999999999


Q ss_pred             CCCccccceeEEeeecCceeeE--eEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          230 DGVKKQSASCVLAMEHPAVFMD--CRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      ++++..   ..+....+.....  .+.+      +.+.+|++++.||.|++||+
T Consensus       281 ~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         281 TTSKCV---QKWTLDKQQLGNQQVGVVA------TGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TTTEEE---EEEECCTTCGGGCEEEEEE------EETTEEEEEETTSCEEEEET
T ss_pred             CCCCEE---EEEEecCCcccCeEEEEEE------CCCCEEEEEECCCEEEEEEC
Confidence            988644   2222222221111  2223      23457899999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.6e-27  Score=229.59  Aligned_cols=249  Identities=14%  Similarity=0.169  Sum_probs=194.9

Q ss_pred             CeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCC
Q 008058           37 GQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCH  116 (579)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h  116 (579)
                      |...+.+.+|...+.++.|+++                           +.+|++|+.||.|++||+.+++....+..+|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~d---------------------------g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h   54 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSAD---------------------------GKTLFSADAEGHINSWDISTGISNRVFPDVH   54 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTT---------------------------SSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred             CccceEcCCCCCCcEEEEECCC---------------------------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCC
Confidence            5566777777666665555554                           8899999999999999999999887777789


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce---eeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeee
Q 008058          117 PGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSL---LGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM  192 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~  192 (579)
                      ...|++++|+|+|+ +++++.|+.+++|+......   ......+...+.+++++|+|++++++. +.+.+|+...  ..
T Consensus        55 ~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~  131 (299)
T d1nr0a2          55 ATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LT  131 (299)
T ss_dssp             SSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EE
T ss_pred             CCcEEEEEeeccce-eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence            99999999999987 55667899999999764321   222344667899999999999988887 8999999543  23


Q ss_pred             EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          193 QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       193 ~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      ...  ....+.+++|+|+++++++++ .|+.|++||+++++..   ......|. ..+.++.|+     |++.+|++++.
T Consensus       132 ~~~--~~~~~~~~~~s~~~~~l~~g~-~dg~i~~~d~~~~~~~---~~~~~~~~-~~i~~~~~~-----~~~~~l~~~~~  199 (299)
T d1nr0a2         132 EVP--ISYNSSCVALSNDKQFVAVGG-QDSKVHVYKLSGASVS---EVKTIVHP-AEITSVAFS-----NNGAFLVATDQ  199 (299)
T ss_dssp             EEE--CSSCEEEEEECTTSCEEEEEE-TTSEEEEEEEETTEEE---EEEEEECS-SCEEEEEEC-----TTSSEEEEEET
T ss_pred             ccc--ccccccccccccccccccccc-cccccccccccccccc---cccccccc-ccccccccc-----ccccccccccc
Confidence            222  345678999999999999987 7999999999876533   22333444 455677787     89999999999


Q ss_pred             CCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCc
Q 008058          273 TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGED  352 (579)
Q Consensus       273 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v  352 (579)
                      ||.|++||+.++..+....                                                    .+.+|...|
T Consensus       200 d~~i~~~~~~~~~~~~~~~----------------------------------------------------~~~~h~~~v  227 (299)
T d1nr0a2         200 SRKVIPYSVANNFELAHTN----------------------------------------------------SWTFHTAKV  227 (299)
T ss_dssp             TSCEEEEEGGGTTEESCCC----------------------------------------------------CCCCCSSCE
T ss_pred             ccccccccccccccccccc----------------------------------------------------ccccccccc
Confidence            9999999987654322110                                                    123678889


Q ss_pred             EEEeecCCcceeeccccceecccceeee
Q 008058          353 INLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       353 ~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+++|+|+|.++ ++|+.|+++++|++.
T Consensus       228 ~~l~~s~~~~~l-~sgs~dg~i~iwd~~  254 (299)
T d1nr0a2         228 ACVSWSPDNVRL-ATGSLDNSVIVWNMN  254 (299)
T ss_dssp             EEEEECTTSSEE-EEEETTSCEEEEETT
T ss_pred             ccccccccccce-EEEcCCCEEEEEECC
Confidence            999999999999 999999999999984

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.6e-27  Score=232.85  Aligned_cols=315  Identities=11%  Similarity=-0.022  Sum_probs=216.0

Q ss_pred             eEEEEcc-CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSP-ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~-dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      ..-.||| ||+++|+++ +|.|++||..++...+.  .|...                  +.++.|.|.         ++
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~------------------v~~~~~spD---------g~   55 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLR------------------IRYVRRGGD---------TK   55 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSC------------------EEEEEECSS---------SE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCC------------------EEEEEECCC---------CC
Confidence            3458999 999999987 57999999998877652  34433                  345555553         66


Q ss_pred             EEEEEECCC--eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEE
Q 008058           88 LLVLGTGGG--DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCM  165 (579)
Q Consensus        88 ~l~~~~~~g--~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l  165 (579)
                      .|++++.+.  .|++||..+++.. ++ ..|...|.+++|+|+|++|++++.++.+++|++.+++....+..+...+.++
T Consensus        56 ~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          56 VAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             EEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence            777666553  5999999988875 33 5799999999999999999999999999999999999999999899999999


Q ss_pred             EEccCCCEEEEEC------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          166 AVSSDGKMLATAA------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       166 ~~~p~g~~l~~~~------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +|+|+|++|+.+.            +.+++||+.+++.. .+..|...+..+.|+|+|++|++++ .|+.+.+|+.....
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s-~~~~~~~~d~~~~~  211 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLS-YRSLDPSPDRVVLN  211 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEE-SCCCCCEECSSSSC
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEe-CCCceEcccccccc
Confidence            9999999998653            36899999988655 4455778889999999999999988 69999999976543


Q ss_pred             ccc--ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCcee--ecccCCceEEeeecccCc
Q 008058          234 KQS--ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNIEE--LRNTKATKILSSSEDVNS  304 (579)
Q Consensus       234 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~  304 (579)
                      ...  .........+........++     +++..++++..+.     .+..++...+..  +.........+.... ++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  285 (360)
T d1k32a3         212 FSFEVVSKPFVIPLIPGSPNPTKLV-----PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV-HG  285 (360)
T ss_dssp             EECCSCBEEEEEESSTTCCCGGGCC-----CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC-CC
T ss_pred             eeeccccceEEEecccCccccceEC-----CCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEe-cC
Confidence            210  00111112222222223333     6666666554432     244444444332  222222222222111 12


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      +...    .+++++.++.++.       .. ....    +...|.+.+..++|||||++| ++++.|+.+++|++.
T Consensus       286 ~~~~----~~~~~~~~~~i~~-------~d-~~~~----~~~~~~~~v~~~~~SpDG~~l-~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         286 EFAA----YYQGAPEKGVLLK-------YD-VKTR----KVTEVKNNLTDLRLSADRKTV-MVRKDDGKIYTFPLE  344 (360)
T ss_dssp             SHHH----HHHCCCCCEEEEE-------EE-TTTC----CEEEEEEEEEEEEECTTSCEE-EEEETTSCEEEEESS
T ss_pred             CCee----EEEecCCCCEEEE-------EE-CCCC----eEEEecCCcCEEEECCCCCEE-EEEECCCeEEEEECC
Confidence            2222    4555555443333       22 1111    233455568999999999999 999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.1e-25  Score=217.91  Aligned_cols=237  Identities=18%  Similarity=0.295  Sum_probs=194.8

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCe----EEEEeccccccccccccccccccccccCccceEEeeecc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQ----VQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVD   77 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~   77 (579)
                      +.++|  .+++|+|+|+++++|+.|+.+++|+.....    ....+.++...                  ..+..+..  
T Consensus        96 ~~~~v--~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~--  153 (340)
T d1tbga_          96 RSSWV--MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------------------LSCCRFLD--  153 (340)
T ss_dssp             SCSCE--EEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSC------------------EEEEEEEE--
T ss_pred             ccccE--EeeEeeccceeeeeecccceeecccccccccccccceeccccccc------------------cccccccc--
Confidence            35778  566999999999999999999999976543    22333222111                  11111111  


Q ss_pred             cccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           78 RKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                              ...+..+..++....+........... ..+...+....+.+.+.++++++.|+.|++||+++++.+.++.+
T Consensus       154 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~  224 (340)
T d1tbga_         154 --------DNQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             --------TTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC
T ss_pred             --------ccccccccccccccccccccccccccc-cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC
Confidence                    566888889999999998887766444 45778899999999999999999999999999999999999999


Q ss_pred             CCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe--ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          158 STKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF--SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      |...|++++|+|++++|++|+  |.|++||++..+.+..+  ..|...|.+++|+|++++|++++ .||.|++||+.+++
T Consensus       225 h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~  303 (340)
T d1tbga_         225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDFNCNVWDALKAD  303 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE-TTSCEEEEETTTCC
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEE-CCCEEEEEECCCCc
Confidence            999999999999999999987  89999999998887766  35667899999999999999988 79999999998876


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      .     +..+..+...+.++.|+     |++.+|++|+.||.|+|||
T Consensus       304 ~-----~~~~~~H~~~V~~l~~s-----~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         304 R-----AGVLAGHDNRVSCLGVT-----DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             E-----EEEECCCSSCEEEEEEC-----TTSSCEEEEETTSCEEEEC
T ss_pred             E-----EEEEcCCCCCEEEEEEe-----CCCCEEEEEccCCEEEEeC
Confidence            3     35566666677888888     9999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2e-26  Score=231.14  Aligned_cols=266  Identities=16%  Similarity=0.212  Sum_probs=178.3

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccC--ccceEEeeecccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSV--DYTCMKWLSVDRK   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~~~   79 (579)
                      +.++|  .+++++  ++++++||.|++|+|||..+........        .....   ..|...  ........+.+..
T Consensus        13 H~~~I--~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~   77 (393)
T d1sq9a_          13 HDADI--FSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKD--------KSYSH---FVHKSGLHHVDVLQAIERDAF   77 (393)
T ss_dssp             SSSCE--EEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGG--------GEEEE---ECCTTCEEEEEEEEEEETTTE
T ss_pred             ccCcc--EEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccc--------eeEee---eeccCCceEeeeEeeeccCCC
Confidence            56788  545775  4699999999999999976543210000        00000   000000  0000111111110


Q ss_pred             cccccCCcEEEEEECCCeEEEEEccCCeEE----E-Ee----cCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEe
Q 008058           80 KKRKLGSSLLVLGTGGGDVLALAVSAGQLK----W-RL----SDCHPGGVSAISFATH-----GSCIYSAGADGMVCEID  145 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~----~-~~----~~~h~~~V~~l~~~~~-----~~~l~s~~~dg~v~iwd  145 (579)
                           ...++++++.||.|++|++......    . ..    ...+...+..++|.++     +.++++++.||++++||
T Consensus        78 -----~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~  152 (393)
T d1sq9a_          78 -----ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  152 (393)
T ss_dssp             -----EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             -----CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence                 1457889999999999998654221    1 11    1224556888888775     45789999999999999


Q ss_pred             CCCCc------------------eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEe------ecCC
Q 008058          146 PLTGS------------------LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKF------SGHP  199 (579)
Q Consensus       146 ~~~~~------------------~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~------~~h~  199 (579)
                      +....                  .......+...+.+++|+|++ +|++|+  |.|++||+++++++..+      .+|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~  231 (393)
T d1sq9a_         153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  231 (393)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccccc
Confidence            74321                  011112344578999999998 788887  89999999999877654      4689


Q ss_pred             CCEEEEEEecCCCEEEEEecCCC---eEEEEEcCCCccccc--------eeEEeeecCceeeEeEEecCCcccCCCcEEE
Q 008058          200 GAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQSA--------SCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       200 ~~v~~l~~~~~~~~l~s~s~~d~---~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                      .+|++++|+|+|++|++++ .|+   .|++||+++++....        .....+..|...+.+++|+     |++++|+
T Consensus       232 ~~V~~l~~spdg~~l~sgs-~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs-----pd~~~l~  305 (393)
T d1sq9a_         232 NSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN-----DSGETLC  305 (393)
T ss_dssp             CCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC-----SSSSEEE
T ss_pred             ceEEEcccccccceeeeec-CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC-----CCCCeeE
Confidence            9999999999999999998 576   599999998764310        0111122345567788888     9999999


Q ss_pred             EEEcCCeEEEEECCCceeecccCCce
Q 008058          269 AISETGVCYIWYGQNIEELRNTKATK  294 (579)
Q Consensus       269 s~~~dg~i~iwd~~~~~~~~~~~~~~  294 (579)
                      +++.||+|++||+++++.+..++.+.
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l~gH~  331 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTLNMHC  331 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCG
T ss_pred             EECCCCEEEEEECCCCCEEEEECCcC
Confidence            99999999999999999887765543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.8e-26  Score=221.81  Aligned_cols=289  Identities=12%  Similarity=0.081  Sum_probs=203.8

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .+++|+|+|++||+|+.||+|+|||+.++.....+..              ..+| ...+.+++|.+.+     
T Consensus        11 ~d~I--~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~--------------~~~h-~~~V~~v~f~~~~-----   68 (342)
T d1yfqa_          11 KDYI--SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--------------SLRY-KHPLLCCNFIDNT-----   68 (342)
T ss_dssp             SSCE--EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--------------EEEC-SSCEEEEEEEESS-----
T ss_pred             CCCE--EEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEE--------------ecCC-CCCEEEEEEeCCC-----
Confidence            3458  4559999999999999999999999876543322210              0022 2356677787654     


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE----eecC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK----FRAS  158 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~----~~~~  158 (579)
                         +.++++|+.||.|++|+...+.........+........+.+++..+++++.|+++++||++.+.....    ...+
T Consensus        69 ---~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~  145 (342)
T d1yfqa_          69 ---DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN  145 (342)
T ss_dssp             ---SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred             ---CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccc
Confidence               668999999999999999988877666555555666677778888999999999999999875433222    2222


Q ss_pred             --CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee---EEeecCCCCEEEEEEec-CCCEEEEEecCCCeEEEEEcC
Q 008058          159 --TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSD-NGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       159 --~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~---~~~~~h~~~v~~l~~~~-~~~~l~s~s~~d~~i~vwd~~  230 (579)
                        ........+.+++..+++++  +.|++||++..+..   .....+...+.+..+.+ ++..+++++ .||.+.+|+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~v~~~~  224 (342)
T d1yfqa_         146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS-IDGRVAVEFFD  224 (342)
T ss_dssp             SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE-TTSEEEEEECC
T ss_pred             cccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec-CCCeEEEEEec
Confidence              22445667788888888887  89999999876542   22334455566666554 566777776 79999999987


Q ss_pred             CCcccc---ceeE-------EeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeec
Q 008058          231 GVKKQS---ASCV-------LAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSE  300 (579)
Q Consensus       231 ~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  300 (579)
                      ......   ....       .....+...+.+++|+     |++.+|++|+.||.|++||+++++.+.....        
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~--------  291 (342)
T d1yfqa_         225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-----PRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--------  291 (342)
T ss_dssp             TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC-----TTTCCEEEEETTSCEEEEETTTTEEEEECCC--------
T ss_pred             CCcceeeccccceeeeeeeccCCCcccccceeEEec-----CCccEEEEECCCCEEEEEECCCCcEEEEecC--------
Confidence            653221   0000       0112334456778888     9999999999999999999988765532210        


Q ss_pred             ccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          301 DVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                                    .|  .+..++|+|+|.++ ++++.|.+.++|..
T Consensus       292 ----------------------------------------------~~--~~~~~~~s~~~~~l-~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         292 ----------------------------------------------FN--EDSVVKIACSDNIL-CLATSDDTFKTNAA  321 (342)
T ss_dssp             ----------------------------------------------CS--SSEEEEEEECSSEE-EEEEECTHHHHCSS
T ss_pred             ----------------------------------------------CC--CCEEEEEEeCCCEE-EEEEcCCcEEEeee
Confidence                                                          11  34567789999999 77777889899865

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.1e-25  Score=217.60  Aligned_cols=271  Identities=14%  Similarity=0.146  Sum_probs=197.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|+|+ ++|++|+.||+|++|+.................                ......+.+.     
T Consensus        52 H~~~V--~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~-----  107 (355)
T d1nexb2          52 HDGGV--WALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV----------------RCLDIVEYKN-----  107 (355)
T ss_dssp             CSSCE--EEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCE----------------EEEEEEEETT-----
T ss_pred             CCCCE--EEEEEcCC-CEEEEEecccccccccccccccccccccccccc----------------cccccccccc-----
Confidence            46788  55599986 589999999999999999988776554222111                1111222221     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEec----------------------CCCCCCEEEEEEccCCCEEEEEeCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLS----------------------DCHPGGVSAISFATHGSCIYSAGADG  139 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~----------------------~~h~~~V~~l~~~~~~~~l~s~~~dg  139 (579)
                          +..+++++.|+.|++||+.++.......                      ..|...+.  .+.++++.++++..|+
T Consensus       108 ----~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~  181 (355)
T d1nexb2         108 ----IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDN  181 (355)
T ss_dssp             ----EEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTS
T ss_pred             ----cceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccc
Confidence                6779999999999999998765432211                      12333333  3455788999999999


Q ss_pred             cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          140 MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       140 ~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      .|++||+.+++.+..+.++...+.++.++|+++.+++++  +.|++||.+++..+..+.+|...|.++.|++  ++++++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~  259 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSA  259 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEE
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeee
Confidence            999999999999999998889999999999999999987  8999999999999999999999999999864  588888


Q ss_pred             ecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc-cCCceEE
Q 008058          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN-TKATKIL  296 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~  296 (579)
                      + .||.|++||+++....     .. .|......+.+++     +++.++++| .||.|++||+++++.+.. ..++...
T Consensus       260 ~-~dg~i~iwd~~~~~~~-----~~-~~~~~~~~~~~~~-----~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~  326 (355)
T d1nexb2         260 A-ADGSIRGWDANDYSRK-----FS-YHHTNLSAITTFY-----VSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQ  326 (355)
T ss_dssp             C-TTSEEEEEETTTCCEE-----EE-EECTTCCCCCEEE-----ECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred             e-ccccccccccccccee-----cc-cccCCceEEEEEc-----CCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCC
Confidence            7 7999999999876532     22 2444455556665     777777665 589999999999988753 3444444


Q ss_pred             eeecccCcccccccchhhhhcccccee
Q 008058          297 SSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       297 ~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      +.+.. ++++ .    .+++++.||.+
T Consensus       327 V~~v~-~~~~-~----~~~~~s~dg~~  347 (355)
T d1nexb2         327 IWSVN-FKGK-T----LVAAVEKDGQS  347 (355)
T ss_dssp             EEEEE-EETT-E----EEEEEESSSCE
T ss_pred             EEEEE-EcCC-e----EEEEEECCCcE
Confidence            44333 3332 1    56677777643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.9e-26  Score=216.59  Aligned_cols=266  Identities=12%  Similarity=0.081  Sum_probs=195.5

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      +.++|  .+++|+|    |++|+.||+|++||..++.     ..|...+                  .++.+.+      
T Consensus        12 H~~~I--~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V------------------~~~~~~~------   56 (287)
T d1pgua2          12 HNKGI--TALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLI------------------VSLDNSK------   56 (287)
T ss_dssp             CSSCE--EEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCE------------------EEEECCS------
T ss_pred             CCCce--EEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCE------------------EEEEecC------
Confidence            46789  4559987    9999999999999987542     3343333                  3344332      


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKG  161 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~  161 (579)
                          +..+++++.|+.|++|+....+        ....+.++.+++++..++++ .++.+.+|+..+++.+..+..+ ..
T Consensus        57 ----~~~~~s~s~D~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~  122 (287)
T d1pgua2          57 ----AQEYSSISWDDTLKVNGITKHE--------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SP  122 (287)
T ss_dssp             ----TTCCEEEETTTEEEETTEEEEE--------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SC
T ss_pred             ----CCeEEEEeeccccccccccccc--------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-ce
Confidence                4457999999999999976432        23457888999988766665 5667899999999888887743 33


Q ss_pred             eeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                        ..+++|++..+++++   +.+++|++...+....+. .|..++++++|+|++.+|++++ .||.|++||+.+++..  
T Consensus       123 --~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~--  197 (287)
T d1pgua2         123 --GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVK--  197 (287)
T ss_dssp             --EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEE--
T ss_pred             --eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeecccccc--
Confidence              345677788887776   579999998776655553 5778999999999999999988 6999999999887532  


Q ss_pred             eeEEeeecCceeeEeEEecCCc-----ccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          238 SCVLAMEHPAVFMDCRCIDNGG-----VDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                        ......+...+.++.|++..     ..+++.++++|+.||+|++||++++...                         
T Consensus       198 --~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------------------  250 (287)
T d1pgua2         198 --TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------------------  250 (287)
T ss_dssp             --ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------------------------
T ss_pred             --cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE-------------------------
Confidence              11223444456666665321     1256789999999999999997542110                         


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYV  379 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~  379 (579)
                                                   +..+.+|...|.+++|+|++. + +|+|.|+++++|++
T Consensus       251 -----------------------------~~~~~~h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i  286 (287)
T d1pgua2         251 -----------------------------IKALNAHKDGVNNLLWETPST-L-VSSGADACIKRWNV  286 (287)
T ss_dssp             -----------------------------EEETTSSTTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred             -----------------------------EEEeCCCCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence                                         112337888999999999986 5 78888999999987

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.1e-23  Score=198.95  Aligned_cols=264  Identities=16%  Similarity=0.163  Sum_probs=187.2

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc--
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK--   79 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~--   79 (579)
                      ++++|  .+++|+|+  +|++|+.|+++++|+................+....+..... .......+...|.....+  
T Consensus        56 h~~~V--~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~~~~~~  130 (342)
T d2ovrb2          56 HTGGV--WSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV-VSGSRDATLRVWDIETGQCL  130 (342)
T ss_dssp             CSSCE--EEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE-EEEETTSEEEEEESSSCCEE
T ss_pred             CCCCE--EEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccc-cccccceeEEEeecccccce
Confidence            35678  55689874  999999999999999988877665554443332222111100 000011111122111100  


Q ss_pred             ----------cccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 008058           80 ----------KKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG  149 (579)
Q Consensus        80 ----------~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~  149 (579)
                                .........++.++.++.|++||...+..+..+ .+|...+..+.+  ++.++++++.||.|++||++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~  207 (342)
T d2ovrb2         131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG  207 (342)
T ss_dssp             EEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC
T ss_pred             eeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEE-cCcccccccccC--CCCEEEEEeCCCeEEEeecccc
Confidence                      000112567899999999999999999988666 568777776655  7889999999999999999999


Q ss_pred             ceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec---CCCCEEEEEEecCCCEEEEEecCCCeE
Q 008058          150 SLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG---HPGAVRFMTFSDNGKYVLSSAVGERYI  224 (579)
Q Consensus       150 ~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~s~s~~d~~i  224 (579)
                      +.+..+.+|...+.++++++  +++++++  |.|++||....+....+.+   |...+.++.+  +++++++++ .||+|
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s-~Dg~i  282 (342)
T d2ovrb2         208 NCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS-DDGTV  282 (342)
T ss_dssp             CEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE-TTSEE
T ss_pred             eeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc-CCCEE
Confidence            99999999999998888764  5888887  8999999999888877765   4455666655  456888887 79999


Q ss_pred             EEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCe----EEEEECCC
Q 008058          225 ALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGV----CYIWYGQN  283 (579)
Q Consensus       225 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~----i~iwd~~~  283 (579)
                      ++||+++++............+...+..+.|+     |++.+|++|+.||+    |++||++.
T Consensus       283 ~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s-----~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS-----NTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEETTTCCEEEEEEECTTGGGTCEEEEEEEC-----SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEEEEEecccCCCCCCCEEEEEEC-----CCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999998754111111112345567888888     99999999999985    99999763

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.1e-24  Score=214.16  Aligned_cols=204  Identities=15%  Similarity=0.157  Sum_probs=148.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           17 LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        17 g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      +.++++++.||.|++|+.........+..+......        ..........+.|.+.....    ...++++++.||
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dg  146 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD--------SDMKKHSFWALKWGASNDRL----LSHRLVATDVKG  146 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC--------TTGGGSCEEEEEEECCC--------CEEEEEEETTS
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeeeeccccceee--------eccCCCceEEEEEecCCCcc----cccEEEEEcCCC
Confidence            357889999999999987543321111111100000        00011223345565543211    157899999999


Q ss_pred             eEEEEEccCCe---------------E--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe----
Q 008058           97 DVLALAVSAGQ---------------L--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF----  155 (579)
Q Consensus        97 ~i~iwd~~~~~---------------~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----  155 (579)
                      .|++|++....               .  .......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+    
T Consensus       147 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~  225 (393)
T d1sq9a_         147 TTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQH  225 (393)
T ss_dssp             CEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             cEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccc
Confidence            99999985321               0  111123455678999999997 8999999999999999999877654    


Q ss_pred             --ecCCCCeeEEEEccCCCEEEEEC--C---eEEEEECCCCeeeEEee-------------cCCCCEEEEEEecCCCEEE
Q 008058          156 --RASTKGISCMAVSSDGKMLATAA--G---QLKTFNCSDHKKMQKFS-------------GHPGAVRFMTFSDNGKYVL  215 (579)
Q Consensus       156 --~~~~~~v~~l~~~p~g~~l~~~~--g---~i~vwd~~~~~~~~~~~-------------~h~~~v~~l~~~~~~~~l~  215 (579)
                        .+|..+|++++|+|+|++|++|+  +   .|++||+++++.+.++.             +|...|++++|+|++++|+
T Consensus       226 ~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence              45788999999999999999997  3   59999999998877764             7999999999999999999


Q ss_pred             EEecCCCeEEEEEcCCCcc
Q 008058          216 SSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       216 s~s~~d~~i~vwd~~~~~~  234 (579)
                      +++ .|++|++||+.+++.
T Consensus       306 S~s-~D~~v~vWd~~~g~~  323 (393)
T d1sq9a_         306 SAG-WDGKLRFWDVKTKER  323 (393)
T ss_dssp             EEE-TTSEEEEEETTTTEE
T ss_pred             EEC-CCCEEEEEECCCCCE
Confidence            998 799999999999863

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.5e-23  Score=200.44  Aligned_cols=249  Identities=10%  Similarity=0.038  Sum_probs=174.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEE--ecCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeeEeecCCC-C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWR--LSDCHPGGVSAISFATHG-SCIYSAGADGMVCEIDPLTGSLLGKFRASTK-G  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~  161 (579)
                      +++|++|+.||.|++||+.++.....  ...+|.++|.+++|+|++ .+|++|+.||.|++|++..+........+.. .
T Consensus        23 ~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~  102 (342)
T d1yfqa_          23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL  102 (342)
T ss_dssp             GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCS
T ss_pred             CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccc
Confidence            78899999999999999986543222  223699999999999865 5799999999999999988877766655544 3


Q ss_pred             eeEEEEccCCCEEEEEC--CeEEEEECCCCeee----EEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          162 ISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM----QKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~----~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .....+.+++..+++++  +.+++||++++...    .....+  ......+.+.+.+..+++++ .|+.|++|++....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~  181 (342)
T d1yfqa_         103 GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-NNSQVQWFRLPLCE  181 (342)
T ss_dssp             CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE-STTEEEEEESSCCT
T ss_pred             ccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec-CCCcEEEEecccCc
Confidence            44555666777887776  89999998754332    222222  23345667788888999887 79999999998876


Q ss_pred             cccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeecccCcccccccchh
Q 008058          234 KQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAA  313 (579)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (579)
                      .... ................+.     .++..+++++.||.+.+|+..................               
T Consensus       182 ~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~---------------  240 (342)
T d1yfqa_         182 DDNG-TIEESGLKYQIRDVALLP-----KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC---------------  240 (342)
T ss_dssp             TCCC-EEEECSCSSCEEEEEECS-----GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC---------------
T ss_pred             ccce-eeeecccccceeeeEeec-----CCCCEEEeecCCCeEEEEEecCCcceeeccccceeee---------------
Confidence            5421 222222333344444454     6788999999999999999866544332211100000               


Q ss_pred             hhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeeec
Q 008058          314 IFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQNR  382 (579)
Q Consensus       314 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~~  382 (579)
                                               ........+|...+.+++|+|+|.+| +||+.|+++++|++.+.
T Consensus       241 -------------------------~~~~~~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~vWD~~~~  283 (342)
T d1yfqa_         241 -------------------------HRLNLKDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             -------------------------CCCCTTCCSSCCCEEEEEECTTTCCE-EEEETTSCEEEEETTTT
T ss_pred             -------------------------eeeccCCCcccccceeEEecCCccEE-EEECCCCEEEEEECCCC
Confidence                                     00000123577789999999999999 99999999999998643

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6e-21  Score=181.11  Aligned_cols=232  Identities=13%  Similarity=0.255  Sum_probs=177.1

Q ss_pred             CCCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            2 GSSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      ++++|  .+++|  ++++|++|+.||.|++|++..+............                    ...+...     
T Consensus        54 H~~~V--~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~-----  104 (293)
T d1p22a2          54 HTGSV--LCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA--------------------VLHLRFN-----  104 (293)
T ss_dssp             CSSCE--EEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC--------------------EEEEECC-----
T ss_pred             CCCCE--eeeec--ccceeecccccccccccccccccccccccccccc--------------------ccccccc-----
Confidence            35677  54454  7889999999999999999998877655422211                    1111111     


Q ss_pred             cccCCcEEEEEECCCeEEEEEccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCC
Q 008058           82 RKLGSSLLVLGTGGGDVLALAVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        82 ~~~~~~~l~~~~~~g~i~iwd~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                          ...++++..++.+.+|+..+...  .......|...|..+.+.+  ..+++++.|+.|++||+.+++.+..+.++.
T Consensus       105 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~  178 (293)
T d1p22a2         105 ----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHK  178 (293)
T ss_dssp             ----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             ----ccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccc
Confidence                56789999999999999987653  2233467888998888754  578899999999999999999999999998


Q ss_pred             CCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc--
Q 008058          160 KGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ--  235 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~--  235 (579)
                      ..+..+.++  +..+++++  |.|++||+++.+.+..+.+|...+..  +++++.+|++++ .||.|++||+......  
T Consensus       179 ~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~  253 (293)
T d1p22a2         179 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGA-YDGKIKVWDLVAALDPRA  253 (293)
T ss_dssp             SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEE-TTSCEEEEEHHHHTSTTS
T ss_pred             cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEc-CCCEEEEEECCCCccccc
Confidence            888888776  45777776  99999999999999999999988875  556788999987 7999999998653321  


Q ss_pred             --cceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          236 --SASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       236 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                        ...++..+..+...+..+.|       ++.+|++++.||+|++||
T Consensus       254 ~~~~~~~~~~~~H~~~V~~v~~-------d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         254 PAGTLCLRTLVEHSGRVFRLQF-------DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CTTTTEEEEECCCSSCCCCEEE-------CSSCEEECCSSSEEEEEC
T ss_pred             cCCceeeEEecCCCCCEEEEEE-------cCCEEEEEecCCEEEEeC
Confidence              12234455555555556666       457899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.3e-21  Score=184.66  Aligned_cols=226  Identities=11%  Similarity=0.099  Sum_probs=165.9

Q ss_pred             CCcccceEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      +..|  .+++|++++ .+++++.|++|++|+....+    +.                     ....++.+.+       
T Consensus        46 ~~~V--~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~----~~---------------------~~~~~~~~~~-------   90 (287)
T d1pgua2          46 SNLI--VSLDNSKAQ-EYSSISWDDTLKVNGITKHE----FG---------------------SQPKVASANN-------   90 (287)
T ss_dssp             CSCE--EEEECCSTT-CCEEEETTTEEEETTEEEEE----CS---------------------SCEEEEEECS-------
T ss_pred             CCCE--EEEEecCCC-eEEEEeeccccccccccccc----cc---------------------cceeeeeecc-------
Confidence            4567  555888765 67899999999999865321    10                     0111222222       


Q ss_pred             ccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeeEee-cCCC
Q 008058           83 KLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG-MVCEIDPLTGSLLGKFR-ASTK  160 (579)
Q Consensus        83 ~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~-~~~~  160 (579)
                         ...+++.+.++.+.+|+..+++.+..+.  +...+.  ++++++..+++++.++ .+++|++...+....+. .+..
T Consensus        91 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~  163 (287)
T d1pgua2          91 ---DGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA  163 (287)
T ss_dssp             ---SSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEE--EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS
T ss_pred             ---CCceEEEeecccceeeeccceeeeeecc--ccceee--eeeccCcceeeeccccceeeeeeccccceeeeeeeccCC
Confidence               3445666778889999999998876653  333444  5567788888887765 79999987666555544 3667


Q ss_pred             CeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeE-EeecCCCCEEEEEEecC----------CCEEEEEecCCCeEEEE
Q 008058          161 GISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMTFSDN----------GKYVLSSAVGERYIALW  227 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~----------~~~l~s~s~~d~~i~vw  227 (579)
                      .+++++|+|++++|++|+  |.|++||+.+++... .+.+|..+|.+++|+|+          +.++++++ .|++|++|
T Consensus       164 ~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw  242 (287)
T d1pgua2         164 KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFIY  242 (287)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEEE
T ss_pred             ceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEEE
Confidence            899999999999999997  899999999987654 46789999999999875          45788887 79999999


Q ss_pred             EcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEEC
Q 008058          228 RTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYG  281 (579)
Q Consensus       228 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~  281 (579)
                      |++.....    +.....+...+..+.|+     |++ .|++++.||+|++|++
T Consensus       243 ~~~~~~~~----~~~~~~h~~~V~~v~~~-----~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         243 SVKRPMKI----IKALNAHKDGVNNLLWE-----TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ESSCTTCC----EEETTSSTTCEEEEEEE-----ETT-EEEEEETTSCEEEEEE
T ss_pred             ECCCCCeE----EEEeCCCCCCeEEEEEC-----CCC-EEEEEECCCeEEEEEE
Confidence            99775422    23344445556777776     665 5889999999999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1.1e-19  Score=173.77  Aligned_cols=262  Identities=12%  Similarity=0.109  Sum_probs=195.5

Q ss_pred             EEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEECCCeEE
Q 008058           21 AICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTGGGDVL   99 (579)
Q Consensus        21 as~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~~g~i~   99 (579)
                      ++++.|++|.|||+.+++.+.++.... .+..+.|+++                           ++++ +++..++.|.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spd---------------------------G~~l~v~~~~~~~i~   57 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPD---------------------------GTKVYVANAHSNDVS   57 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTT---------------------------SSEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCC---------------------------CCEEEEEECCCCEEE
Confidence            356678999999999999998886432 1233344443                           6666 4566789999


Q ss_pred             EEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC
Q 008058          100 ALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       100 iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~  178 (579)
                      +||+.+++.+..+. .+ ..+..+.|++++..++. +..++.+.+|+..+++....+..+ ..+.+++++|+|+.++.+.
T Consensus        58 v~d~~t~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~  134 (301)
T d1l0qa2          58 IIDTATNNVIATVP-AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTN  134 (301)
T ss_dssp             EEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCceeeeee-cc-ccccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeee
Confidence            99999999987763 34 35789999999987554 556788999999999888888754 5678999999999887655


Q ss_pred             ---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEe
Q 008058          179 ---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCI  255 (579)
Q Consensus       179 ---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (579)
                         +.+.+|+..+++.+..+..+ ..+..+.++|+++++++++..++.+.+|+....+..     ......... ....+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~  207 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI-----DTVKVEAAP-SGIAV  207 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEECSSEE-EEEEE
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeee-----ecccccCCc-ceeec
Confidence               78999999999988888754 557889999999999888866678888887776532     233333333 34555


Q ss_pred             cCCcccCCCcEEEEEEc---CCeEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEE
Q 008058          256 DNGGVDDAGLYVLAISE---TGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFV  332 (579)
Q Consensus       256 ~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  332 (579)
                      +     +++..+++++.   ++.|++||..+++.+....                                         
T Consensus       208 ~-----~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~-----------------------------------------  241 (301)
T d1l0qa2         208 N-----PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP-----------------------------------------  241 (301)
T ss_dssp             C-----TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             c-----ccccccccccccceeeeeeeeecCCCeEEEEEc-----------------------------------------
Confidence            5     78888776654   4689999987776532110                                         


Q ss_pred             EeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeeee
Q 008058          333 AYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       333 ~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                                    . ...+..++|||||++|.++++.|+++++|++.+
T Consensus       242 --------------~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         242 --------------V-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             --------------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             --------------C-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence                          1 124678999999998757888899999999853

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=3.3e-21  Score=194.89  Aligned_cols=322  Identities=9%  Similarity=-0.043  Sum_probs=206.3

Q ss_pred             EEccCCC--EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALD--YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~--~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .+++|.+  ++++.+.||+|+|||..+++++.++..+. .+..+.|+++                           ++++
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPD---------------------------Gk~l   76 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSAS---------------------------GRYL   76 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTT---------------------------SCEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEE
Confidence            3555543  55777889999999999999999998654 3556677766                           8899


Q ss_pred             EEEECCCeEEEEEccCCeEEE--Ee--cCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceeeEeecCC-----
Q 008058           90 VLGTGGGDVLALAVSAGQLKW--RL--SDCHPGGVSAISFATHGSCIYS-AGADGMVCEIDPLTGSLLGKFRAST-----  159 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~--~~--~~~h~~~V~~l~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~-----  159 (579)
                      ++++.||.|++||+.+++...  ++  ..+|...+.+++|+|||+++++ +..++.+++||..++..+..+..+.     
T Consensus        77 ~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          77 LVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc
Confidence            999999999999999887432  22  2356666778888999998755 4589999999999998887766543     


Q ss_pred             ------CCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee-EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEc
Q 008058          160 ------KGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM-QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRT  229 (579)
Q Consensus       160 ------~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~  229 (579)
                            .....+.+++++..++...   +.+.+++....... ....++...+..+.|+|++++++++...+..+.+|+.
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred             eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence                  3345667777777766654   56777776655432 2344678889999999999999998877889999999


Q ss_pred             CCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEE--EEcCCeEEEEECCCc-------eeecccCCceEEeeec
Q 008058          230 DGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLA--ISETGVCYIWYGQNI-------EELRNTKATKILSSSE  300 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~  300 (579)
                      .+++..   ................+.    .+....+.+  .+.|+.+.+|+....       +......++...+...
T Consensus       237 ~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v  309 (426)
T d1hzua2         237 KDRRLS---ALVDVGKTPHPGRGANFV----HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI  309 (426)
T ss_dssp             TTTEEE---EEEECSSCCCCSCCEEEE----ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE
T ss_pred             ccccEE---EEeccCCcccccceeeee----cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE
Confidence            988644   112211111111112221    022222322  234778888876543       2222222222111211


Q ss_pred             ccCcccccccchhhhh-------ccccceecCCceEEEEEeCCCCCceeEE--------EecCCCCcEEEeecCCcceee
Q 008058          301 DVNSKSQKSATAAIFA-------AKLQDIVKPASVHTFVAYGLLLKPSFQK--------ILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       301 ~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~h~~~v~~~~~s~dg~~l~  365 (579)
                       .++|+++    .+++       +..++.++       +.+-.......+.        +..|...|..++|||||+++.
T Consensus       310 -~~sPdg~----~l~v~~~~~~s~~~~~tv~-------vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         310 -KTHPKSS----HLYVDTTFNPDARISQSVA-------VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             -ECCTTCS----EEEECCTTCSSHHHHTCEE-------EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             -EcCCCCc----eEEEeecCCCCcccCCEEE-------EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence             2677777    4552       22333222       2221111111111        123555799999999999764


Q ss_pred             cc----ccceecccceeee
Q 008058          366 MS----QSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s----~s~d~~~~~w~~~  380 (579)
                      +|    ++.|++|++||..
T Consensus       378 vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         378 FSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             EEECCCTTSCCEEEEEETT
T ss_pred             EEEecCCCCCCeEEEEECC
Confidence            54    3568889999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5.5e-21  Score=193.08  Aligned_cols=308  Identities=14%  Similarity=0.055  Sum_probs=210.5

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeE--EEEec---cccccccccccccccccccccCccceEEeeecccccccc
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQV--QTEFA---DIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      ..++|||||+++++++.||+|++||+.+++.  ..+++   .+...+....|+++                         
T Consensus        65 ~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD-------------------------  119 (432)
T d1qksa2          65 HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE-------------------------  119 (432)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT-------------------------
T ss_pred             eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC-------------------------
Confidence            3459999999999999999999999988763  33333   23233333344444                         


Q ss_pred             cCCcE-EEEEECCCeEEEEEccCCeEEEEecC----------CCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCce
Q 008058           84 LGSSL-LVLGTGGGDVLALAVSAGQLKWRLSD----------CHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSL  151 (579)
Q Consensus        84 ~~~~~-l~~~~~~g~i~iwd~~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~  151 (579)
                        +++ ++++..++.|.+||..+++.+..+..          .+......+.++|+|..+ ++...++.|.+||..+++.
T Consensus       120 --G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~  197 (432)
T d1qksa2         120 --DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN  197 (432)
T ss_dssp             --TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred             --CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence              665 47788899999999999988755421          244567889999999875 4566789999999988776


Q ss_pred             eeEee-cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec-----CCCCEEEEEEecCCCEEEEEecCCC
Q 008058          152 LGKFR-ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG-----HPGAVRFMTFSDNGKYVLSSAVGER  222 (579)
Q Consensus       152 ~~~~~-~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~l~s~s~~d~  222 (579)
                      ..... .+...+..++|+|+|+++++++   +.+.++|..+++.+..+..     |........+...+....+....|+
T Consensus       198 ~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~  277 (432)
T d1qksa2         198 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD  277 (432)
T ss_dssp             EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS
T ss_pred             ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCc
Confidence            55433 2455789999999999888887   7999999999988776642     3344445555555666666555688


Q ss_pred             eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccCCceEEeeeccc
Q 008058          223 YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTKATKILSSSEDV  302 (579)
Q Consensus       223 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  302 (579)
                      .+.+|+.......        .+. ..+....+.     |++..+++++.++..++|+..+...-...   ...+     
T Consensus       278 ~v~~~~~~~~~~~--------~~~-~~v~~~~~~-----~~g~~~~~~s~p~~~~lw~~~~~~~~~~~---~~sv-----  335 (432)
T d1qksa2         278 SVALIGTDPEGHP--------DNA-WKILDSFPA-----LGGGSLFIKTHPNSQYLYVDATLNPEAEI---SGSV-----  335 (432)
T ss_dssp             EEEEEECCTTTCT--------TTB-TSEEEEEEC-----SCSCCCCEECCTTCSEEEEECTTCSSHHH---HTCE-----
T ss_pred             eEEeccccccccc--------ccc-cEEEEEEEc-----CCCCeEEEEecCCccceeecccCCCCCCe---eeEE-----
Confidence            9999987665321        122 223344555     88899999999999999986554331111   0011     


Q ss_pred             CcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccc----cceeccccee
Q 008058          303 NSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQ----SLLKSKRGRY  378 (579)
Q Consensus       303 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~----s~d~~~~~w~  378 (579)
                      ..++++    .+++++.++.++.++.    ..+       ..+..|...+.+++|||||+++.+|.    ..++.|++||
T Consensus       336 ~vpDg~----~la~~s~d~~~k~w~~----~~~-------~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         336 AVFDIK----AMTGDGSDPEFKTLPI----AEW-------AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEEEGG----GCCCSSSCCCEEEECH----HHH-------HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EEEech----hhcccccCCceEeccc----ccc-------cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            124555    7788888775555331    000       12234666899999999999874553    2467899998


Q ss_pred             ee
Q 008058          379 VQ  380 (579)
Q Consensus       379 ~~  380 (579)
                      ..
T Consensus       401 ~~  402 (432)
T d1qksa2         401 DK  402 (432)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=4e-21  Score=194.12  Aligned_cols=301  Identities=8%  Similarity=-0.051  Sum_probs=203.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCe
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGD   97 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~   97 (579)
                      -++++.+.||+|.|||..+++++..+..+. .+..+.|+++                           ++++++++.||.
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpD---------------------------G~~l~~~s~dg~   84 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSAS---------------------------GRYLFVIGRDGK   84 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTT---------------------------SCEEEEEETTSE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCC---------------------------CCEEEEEcCCCC
Confidence            345788899999999999999999998664 4566677776                           899999999999


Q ss_pred             EEEEEccCCeE--EEEec--CCCCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCCCCceeeEeecC-----------CCC
Q 008058           98 VLALAVSAGQL--KWRLS--DCHPGGVSAISFATHGSCI-YSAGADGMVCEIDPLTGSLLGKFRAS-----------TKG  161 (579)
Q Consensus        98 i~iwd~~~~~~--~~~~~--~~h~~~V~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~-----------~~~  161 (579)
                      |.+||+.+++.  ..++.  .+|.+.+.+..|+|||+++ ++++.+++|++||..+++.+..+..+           ...
T Consensus        85 v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~  164 (432)
T d1qksa2          85 VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR  164 (432)
T ss_dssp             EEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC
T ss_pred             EEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc
Confidence            99999988763  22322  3455667777888999986 67888999999999999988876643           345


Q ss_pred             eeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEee-cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccc
Q 008058          162 ISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFS-GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSA  237 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~  237 (579)
                      ...+.++|+|..++.+.   +.|.+||..+.+...... .+...+..+.|+|+|+++++++..++.+.++|....+..  
T Consensus       165 ~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~--  242 (432)
T d1qksa2         165 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--  242 (432)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--
T ss_pred             eeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE--
Confidence            66789999998876553   899999998876544332 355678899999999999888877889999999887643  


Q ss_pred             eeEEeee----cCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEeeecccCcccccccch
Q 008058          238 SCVLAME----HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATA  312 (579)
Q Consensus       238 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (579)
                       ......    +... .....+.     ..+...++.. .++.+.+|+........ +.......    .+++++.    
T Consensus       243 -~~~~~g~~~~~~~~-~~~~~~~-----~~g~~~~~~~lg~~~v~~~~~~~~~~~~-~~~~v~~~----~~~~~g~----  306 (432)
T d1qksa2         243 -AIEDTGGQTPHPGR-GANFVHP-----TFGPVWATSHMGDDSVALIGTDPEGHPD-NAWKILDS----FPALGGG----  306 (432)
T ss_dssp             -EEEECSSSSBCCTT-CEEEEET-----TTEEEEEEEBSSSSEEEEEECCTTTCTT-TBTSEEEE----EECSCSC----
T ss_pred             -EEeccCccccccCc-ccceecC-----CCCceecccccCCceEEecccccccccc-cccEEEEE----EEcCCCC----
Confidence             111111    1111 1222222     3334444443 37899999876543321 11111111    1344444    


Q ss_pred             hhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          313 AIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       313 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                      .+++++.+...+.     +...         .+..|.....++++ |||+.+ ++++.|+++++|+++
T Consensus       307 ~~~~~s~p~~~~l-----w~~~---------~~~~~~~~~~sv~v-pDg~~l-a~~s~d~~~k~w~~~  358 (432)
T d1qksa2         307 SLFIKTHPNSQYL-----YVDA---------TLNPEAEISGSVAV-FDIKAM-TGDGSDPEFKTLPIA  358 (432)
T ss_dssp             CCCEECCTTCSEE-----EEEC---------TTCSSHHHHTCEEE-EEGGGC-CCSSSCCCEEEECHH
T ss_pred             eEEEEecCCccce-----eecc---------cCCCCCCeeeEEEE-Eechhh-cccccCCceEecccc
Confidence            4555555432222     2111         11123323444554 999999 999999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=4.5e-21  Score=188.48  Aligned_cols=186  Identities=15%  Similarity=0.102  Sum_probs=152.0

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC--cEEEEeCCCCceeeEeecCCCCee
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG--MVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      ++++++++ .|.|++||..++..+. +  +|...|.+++|+|||++|++++.+.  .|++||..+++.. .+..|...+.
T Consensus        15 G~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~   89 (360)
T d1k32a3          15 GDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVF   89 (360)
T ss_dssp             GGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEE
T ss_pred             CCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEE
Confidence            66677765 5799999999888763 3  5899999999999999988776554  7999999877654 5667889999


Q ss_pred             EEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec---------CCCeEEEEEcCCC
Q 008058          164 CMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV---------GERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~---------~d~~i~vwd~~~~  232 (579)
                      +++|+|+|++|++++  +.+++|++.+++....+..|...+.+++|+|+|++|+.+..         .++.+++|++.++
T Consensus        90 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~  169 (360)
T d1k32a3          90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR  169 (360)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             eeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence            999999999999988  89999999999999999999999999999999999986542         3456999999887


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      +..      ....+........|+     |+|++|++++.++.+.+|+.......
T Consensus       170 ~~~------~~~~~~~~~~~~~~s-----pdg~~l~~~s~~~~~~~~d~~~~~~~  213 (360)
T d1k32a3         170 KIF------AATTENSHDYAPAFD-----ADSKNLYYLSYRSLDPSPDRVVLNFS  213 (360)
T ss_dssp             EEE------ECSCSSSBEEEEEEC-----TTSCEEEEEESCCCCCEECSSSSCEE
T ss_pred             cee------eeccccccccccccc-----CCCCEEEEEeCCCceEccccccccee
Confidence            532      222333344556677     99999999999999999997765543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=3e-20  Score=187.73  Aligned_cols=276  Identities=9%  Similarity=0.018  Sum_probs=181.8

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE--ee---cCCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK--FR---ASTK  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~---~~~~  160 (579)
                      +-++++.+.+|.|++||+.+++.+.++. .| ..+.+++|+|||+++++++.|++|++||+.+++....  ++   +|.+
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~-~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVID-TG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEE-CC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            3456778889999999999999998874 34 4699999999999999999999999999998875433  22   3444


Q ss_pred             CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCE-----------EEEEEecCCCEEEEEecCCCeEEE
Q 008058          161 GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAV-----------RFMTFSDNGKYVLSSAVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v-----------~~l~~~~~~~~l~s~s~~d~~i~v  226 (579)
                      .+.+++|+|||+++++++   +.+.+||..+++++..+.+|...+           ..+.+++++..++......+.+.+
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            566777889999987765   899999999998888776655443           445555666655555444455555


Q ss_pred             EEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeecccCCceEEeee-cccCc
Q 008058          227 WRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKILSSS-EDVNS  304 (579)
Q Consensus       227 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~  304 (579)
                      ++.......   .+....+ ......+.++     |++++++++.. +..+.+|+..+++.+............ ...+.
T Consensus       190 ~~~~~~~~~---~~~~~~~-~~~~~~~~~~-----~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (426)
T d1hzua2         190 VNYKDIDNL---TVTSIGA-APFLADGGWD-----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFV  260 (426)
T ss_dssp             EECSSSSSC---EEEEEEC-CSSEEEEEEC-----TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEE
T ss_pred             EEeccccce---eeEEecc-CCccEeeeEC-----CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeee
Confidence            555544322   2222233 3344556676     89998888765 668999999998876543221100000 00000


Q ss_pred             ccccccchhhhhccccceecCCceEEEEEeCC------CCCceeEEEecCCCCcEEEeecCCcceeec------ccccee
Q 008058          305 KSQKSATAAIFAAKLQDIVKPASVHTFVAYGL------LLKPSFQKILVNSGEDINLNCSQDGVLLPM------SQSLLK  372 (579)
Q Consensus       305 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~------s~s~d~  372 (579)
                      .....   .+.+...     ..++.+......      .......++.+|...+..++|+|||++|.+      +++.|+
T Consensus       261 ~~~~~---~~~~~~~-----~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         261 HPKYG---PVWSTSH-----LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             ETTTE---EEEEEEC-----TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             cCCCC---ceEEecc-----CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence            00100   1111111     113333333221      112556788899999999999999999932      677899


Q ss_pred             cccceeee
Q 008058          373 SKRGRYVQ  380 (579)
Q Consensus       373 ~~~~w~~~  380 (579)
                      ++++|++.
T Consensus       333 tv~vwd~~  340 (426)
T d1hzua2         333 SVAVFDLK  340 (426)
T ss_dssp             CEEEEETT
T ss_pred             EEEEEECC
Confidence            99999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=7.5e-19  Score=167.78  Aligned_cols=239  Identities=12%  Similarity=0.091  Sum_probs=181.4

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|||||++|+ +++.++.|++||+.+++.+..+..+..+ .                  .+.|.+..        ...
T Consensus        36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-~------------------~~~~~~~~--------~~~   88 (301)
T d1l0qa2          36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-Q------------------GVAVSPDG--------KQV   88 (301)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-E------------------EEEECTTS--------SEE
T ss_pred             EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc-c------------------cccccccc--------ccc
Confidence            459999999875 5667899999999999998887644321 2                  23333321        334


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEE
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTKGISCMAV  167 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~  167 (579)
                      ++.+..++.+.+|+..+++....+.  +...+.++.|+|+|+.++ ++..++.+.+|+..+++.+..+..+ ..+.++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  165 (301)
T d1l0qa2          89 YVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV  165 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred             cccccccceeeecccccceeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEe
Confidence            5556667789999999998876663  456789999999999865 4556888999999999988887744 56789999


Q ss_pred             ccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEe
Q 008058          168 SSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLA  242 (579)
Q Consensus       168 ~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~  242 (579)
                      +|+++.++++.   +.+.+|+....+....+..+ ..+..++|++++..++.++.  .++.|++||+.+++..     ..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-----~~  239 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-----AR  239 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-----EE
T ss_pred             eccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEE-----EE
Confidence            99999888776   68889998888777766644 55778999999998776542  3468999999987643     33


Q ss_pred             eecCceeeEeEEecCCcccCCCcEE-EEEEcCCeEEEEECCCceeeccc
Q 008058          243 MEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      +..... ...++|+     |||++| ++++.||.|++||+++++.+...
T Consensus       240 ~~~~~~-~~~va~s-----pdg~~l~va~~~~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         240 IPVGPD-PAGIAVT-----PDGKKVYVALSFCNTVSVIDTATNTITATM  282 (301)
T ss_dssp             EECCSS-EEEEEEC-----TTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCC-EEEEEEe-----CCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence            333333 4567787     999987 46667999999999999887654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=5.8e-19  Score=171.31  Aligned_cols=231  Identities=12%  Similarity=0.059  Sum_probs=174.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecccc--ccccccccccccccccccCccceEEeeecccccccccCCcEE-EEEEC
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIA--STETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-VLGTG   94 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-~~~~~   94 (579)
                      +|+++++.|++|+|||+.+++++.++..+.  ..+..+.|+++                           ++++ ++++.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD---------------------------g~~l~v~~~~   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG---------------------------GRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT---------------------------SSEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC---------------------------CCEEEEEECC
Confidence            589999999999999999999998886432  22334444444                           6666 55677


Q ss_pred             CCeEEEEEccCCeEEEEecCCCC-----CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCceeeEeec
Q 008058           95 GGDVLALAVSAGQLKWRLSDCHP-----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~  157 (579)
                      ++.|.+||+.+++.+..+.. +.     ..+.+++|+|+++++++++            .++.+.+||..+++....+..
T Consensus        55 ~~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  133 (337)
T d1pbyb_          55 SESLVKIDLVTGETLGRIDL-STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TTEEEEEETTTCCEEEEEEC-CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEec-CCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc
Confidence            89999999999998866632 22     2345789999999988775            467899999999998888874


Q ss_pred             CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEe------------------------------------------
Q 008058          158 STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF------------------------------------------  195 (579)
Q Consensus       158 ~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~------------------------------------------  195 (579)
                       ...+.+++|+|+|++++++++.+.+||..+++....+                                          
T Consensus       134 -~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T d1pbyb_         134 -PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             -CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             -cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence             4568899999999999999988888988766544332                                          


Q ss_pred             ------------------------ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeE
Q 008058          196 ------------------------SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMD  251 (579)
Q Consensus       196 ------------------------~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  251 (579)
                                              ..+...+..+.++|++.+++..   ++.+++||+.+++..     ....+.. ...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~-----~~~~~~~-~~~  283 (337)
T d1pbyb_         213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASI-----KRVPLPH-SYY  283 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEE-----EEEECSS-CCC
T ss_pred             eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc---cccEEEEECCCCcEE-----EEEcCCC-CEE
Confidence                                    1223334455667777776543   578999999988744     3343433 345


Q ss_pred             eEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecccC
Q 008058          252 CRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      ++.|+     |||++|++++.||+|++||.++++.+..++
T Consensus       284 ~~~~s-----~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         284 SVNVS-----TDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEC-----TTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EEEEC-----CCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            67787     999999999999999999999998876553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=8.8e-20  Score=177.94  Aligned_cols=273  Identities=8%  Similarity=0.002  Sum_probs=185.4

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCCcEE-
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL-   89 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l-   89 (579)
                      +|+++++||++++.|++|.|||+.+++.+.+++.+ ...+..+.|+++                           ++++ 
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD---------------------------G~~l~   55 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD---------------------------NRTAY   55 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT---------------------------SSEEE
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC---------------------------CCEEE
Confidence            78999999999999999999999999999888632 233334444444                           6665 


Q ss_pred             EEEECCCeEEEEEccCCeEEEEecCCCC-----CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCCcee
Q 008058           90 VLGTGGGDVLALAVSAGQLKWRLSDCHP-----GGVSAISFATHGSCIYSAG------------ADGMVCEIDPLTGSLL  152 (579)
Q Consensus        90 ~~~~~~g~i~iwd~~~~~~~~~~~~~h~-----~~V~~l~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~  152 (579)
                      +++..++.|.+||+.+++.+..+.....     ..+..++|+|||+++++++            .++.+.+||..+++..
T Consensus        56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            4555789999999999998766543221     2356899999999988765            4678999998887765


Q ss_pred             eEeec--CCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec-----------
Q 008058          153 GKFRA--STKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV-----------  219 (579)
Q Consensus       153 ~~~~~--~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~-----------  219 (579)
                      ..+..  ....+..+.+++++.+++ .++.+.+|++.+++.+..+..+.. ...+.++|++..++....           
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
T d1jmxb_         136 KPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTI  213 (346)
T ss_dssp             CCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             eEEEeeeccCceEEEEecCCCEEEE-eCCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeee
Confidence            54433  234566777777776554 457799999999988888765432 334445555443322221           


Q ss_pred             --------------CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          220 --------------GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       220 --------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                                    .+..+.+|+...+...   ......+....... .++     +++.+++... ++.+.+||..+++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~-~~~v~v~d~~~~~  283 (346)
T d1jmxb_         214 ARFKDDKQDPATADLLYGYLSVDLKTGKTH---TQEFADLTELYFTG-LRS-----PKDPNQIYGV-LNRLAKYDLKQRK  283 (346)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEE---EEEEEECSSCEEEE-EEC-----SSCTTEEEEE-ESEEEEEETTTTE
T ss_pred             eeeccCceeEeeccCCceEEEEECCCCceE---EEEeecccceeEEE-EEe-----CCCCEEEEec-CCeEEEEECCCCc
Confidence                          2445666777665432   22222333333333 343     5666666654 4579999987765


Q ss_pred             eecccCCceEEeeecccCcccccccchhhhhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceee
Q 008058          286 ELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLP  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~  365 (579)
                      .+...                                                        .+...+.+++|||||+++ 
T Consensus       284 ~~~~~--------------------------------------------------------~~~~~~~~va~s~DG~~l-  306 (346)
T d1jmxb_         284 LIKAA--------------------------------------------------------NLDHTYYCVAFDKKGDKL-  306 (346)
T ss_dssp             EEEEE--------------------------------------------------------ECSSCCCEEEECSSSSCE-
T ss_pred             EEEEE--------------------------------------------------------cCCCCEEEEEEcCCCCEE-
Confidence            54321                                                        111257789999999999 


Q ss_pred             ccccceecccceeee
Q 008058          366 MSQSLLKSKRGRYVQ  380 (579)
Q Consensus       366 ~s~s~d~~~~~w~~~  380 (579)
                      ++++.|+.+++|++.
T Consensus       307 ~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         307 YLGGTFNDLAVFNPD  321 (346)
T ss_dssp             EEESBSSEEEEEETT
T ss_pred             EEEeCCCcEEEEECc
Confidence            888899999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.80  E-value=8.8e-18  Score=162.81  Aligned_cols=143  Identities=15%  Similarity=0.244  Sum_probs=117.6

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeeEeecCCC----
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIY-SAGADGMVCEIDPLTGSLLGKFRASTK----  160 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~----  160 (579)
                      .++++++.++.|.+||+.+++.+..+.. .+...+.+++|+|||++++ +++.++.|++||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            4689999999999999999999877643 2445688999999999875 566899999999999999888776533    


Q ss_pred             -CeeEEEEccCCCEEEEEC--------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEE
Q 008058          161 -GISCMAVSSDGKMLATAA--------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIA  225 (579)
Q Consensus       161 -~v~~l~~~p~g~~l~~~~--------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~  225 (579)
                       .+..++|+|+++.++++.              +.+.+||..+++....+.. ...+..++|+|+|+++++++   +.+.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~---~~~~  157 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG---RDLH  157 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES---SSEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEc---CCcc
Confidence             456899999999988764              4688999999998888874 45678999999999998865   3467


Q ss_pred             EEEcCCCc
Q 008058          226 LWRTDGVK  233 (579)
Q Consensus       226 vwd~~~~~  233 (579)
                      +||..+++
T Consensus       158 ~~d~~~~~  165 (337)
T d1pbyb_         158 VMDPEAGT  165 (337)
T ss_dssp             EEETTTTE
T ss_pred             eeeeecCc
Confidence            89987765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-16  Score=154.20  Aligned_cols=277  Identities=14%  Similarity=0.193  Sum_probs=180.3

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEe--ccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEE-CC
Q 008058           19 YFAICSGDARIKIWDTLKGQVQTEF--ADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGT-GG   95 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~-~~   95 (579)
                      .+++++.|++|+||++.+...+..+  ..+...+..+.|+++                           +++|++++ .+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD---------------------------G~~L~v~~~~d   58 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD---------------------------KRYLYVGVRPE   58 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT---------------------------SSEEEEEETTT
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC---------------------------CCEEEEEECCC
Confidence            3567778999999998754322222  234455555666665                           77776655 47


Q ss_pred             CeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeeE--eecCCCCeeEEEEccC
Q 008058           96 GDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGA-DGMVCEIDPLTGSLLGK--FRASTKGISCMAVSSD  170 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~--~~~~~~~v~~l~~~p~  170 (579)
                      +.|.+|++..+......  ...+...+..++|+|||+++++++. ++.|.+|+.........  ...+...+.++.++|+
T Consensus        59 ~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  138 (333)
T d1ri6a_          59 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD  138 (333)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred             CeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeec
Confidence            89999999765422111  1224456788999999999988874 67899998776654433  3445667889999999


Q ss_pred             CCEEEEEC---CeEEEEECCCCeeeEE------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEE
Q 008058          171 GKMLATAA---GQLKTFNCSDHKKMQK------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVL  241 (579)
Q Consensus       171 g~~l~~~~---g~i~vwd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~  241 (579)
                      +++++.++   ..|.+|+.........      ...+......++|++++.+++......+...+|+........ ....
T Consensus       139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  217 (333)
T d1ri6a_         139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI-ECVQ  217 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-EEEE
T ss_pred             ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccce-eeee
Confidence            99998887   6899999876533221      123345578899999999988877667788898876543221 1111


Q ss_pred             eee------cCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecccCCceEEeeecccCcccccccchhh
Q 008058          242 AME------HPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAI  314 (579)
Q Consensus       242 ~~~------~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  314 (579)
                      ...      ..........++     ++++++++.. .++.+.+|++..........                       
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  269 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHIT-----PDGRHLYACDRTASLITVFSVSEDGSVLSKE-----------------------  269 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCCEEEE-----------------------
T ss_pred             eeeeeecCCCccccceeEEEe-----cccCceeeecccCCeEEEEEEcCCCCEEEEE-----------------------
Confidence            111      111122334455     8888776654 47788998764432111000                       


Q ss_pred             hhccccceecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcceeeccccceecccceeee
Q 008058          315 FAAKLQDIVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGVLLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~s~s~d~~~~~w~~~  380 (579)
                                                   ....+......++|||||++|.++++.++++++|++.
T Consensus       270 -----------------------------~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         270 -----------------------------GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             -----------------------------EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             -----------------------------EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence                                         0011223456789999999885677778999999874

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.71  E-value=1.7e-14  Score=141.94  Aligned_cols=194  Identities=9%  Similarity=-0.082  Sum_probs=134.7

Q ss_pred             CCCcccceEEEEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeec
Q 008058            2 GSSNIRDILTSFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSV   76 (579)
Q Consensus         2 ~~~~V~~~~~~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~   76 (579)
                      ..+|++.+  +++|||+.++...     .++.|.+||..+++.+.++..+...  .+.|+++                  
T Consensus        19 ~~~p~~~~--a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpD------------------   76 (373)
T d2madh_          19 ADGPTNDE--APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS------------------   76 (373)
T ss_pred             CCCCcccc--ccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCC------------------
Confidence            35778555  9999999887642     3467999999999999887644322  3445544                  


Q ss_pred             ccccccccCCcEEEEEE----------CCCeEEEEEccCCeEEEEecCCCCCC-------EEEEEEccCCCEEEEEe--C
Q 008058           77 DRKKKRKLGSSLLVLGT----------GGGDVLALAVSAGQLKWRLSDCHPGG-------VSAISFATHGSCIYSAG--A  137 (579)
Q Consensus        77 ~~~~~~~~~~~~l~~~~----------~~g~i~iwd~~~~~~~~~~~~~h~~~-------V~~l~~~~~~~~l~s~~--~  137 (579)
                               +..++++.          .++.|.+||..+++.+..+. .+...       ...+.|+++++.++...  .
T Consensus        77 ---------G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          77 ---------GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             ---------CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe-cCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence                     66666654          45779999999999876663 23332       24578899998766554  4


Q ss_pred             CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEE-EC--CeEEEEECCCCeeeEEeecCC------CCEEEEEEe
Q 008058          138 DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLAT-AA--GQLKTFNCSDHKKMQKFSGHP------GAVRFMTFS  208 (579)
Q Consensus       138 dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~-~~--g~i~vwd~~~~~~~~~~~~h~------~~v~~l~~~  208 (579)
                      ++.+.+|+....+.....    ....++.++|+|+.++. .+  +.+.+|+...++.......+.      .....+.++
T Consensus       147 ~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             CCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEEC
Confidence            568899998777655443    34578899999986653 33  899999999887766554322      223445666


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          209 DNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      +++.+++ .+ .++.+.+|+.....
T Consensus       223 ~~~~~~~-~~-~~~~v~~~~~~~~~  245 (373)
T d2madh_         223 KSGRIVW-PV-YSGKILQADISAAG  245 (373)
T ss_pred             CCceEEE-ec-CCceEEEEEcCCCe
Confidence            6665544 44 58899999988765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.3e-14  Score=136.27  Aligned_cols=251  Identities=10%  Similarity=0.126  Sum_probs=163.6

Q ss_pred             CCcccceEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccc
Q 008058            3 SSNIRDILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKK   81 (579)
Q Consensus         3 ~~~V~~~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~   81 (579)
                      .+.|+.+  +|||||++|++++ .|+.|++|++........+..+.               ........++|.+.     
T Consensus        36 ~~~v~~l--a~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~---------------~~~~~p~~l~~spD-----   93 (333)
T d1ri6a_          36 PGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES---------------ALPGSLTHISTDHQ-----   93 (333)
T ss_dssp             SSCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE---------------ECSSCCSEEEECTT-----
T ss_pred             CCCEeEE--EEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec---------------ccCCCceEEEEcCC-----
Confidence            3557555  9999999996655 48999999987654332222111               00112223445443     


Q ss_pred             cccCCcEEEEEEC-CCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeE----
Q 008058           82 RKLGSSLLVLGTG-GGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGK----  154 (579)
Q Consensus        82 ~~~~~~~l~~~~~-~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~----  154 (579)
                          ++++++++. ++.|.+|+.......... ...+...+.++.|+|++++++.++ .+..+.+|+.........    
T Consensus        94 ----g~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          94 ----GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             ----SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             ----CCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence                777887775 667999998877643222 234667788999999999988776 455799999876533221    


Q ss_pred             --eecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCe----eeEEee------cCCCCEEEEEEecCCCEEEEEec
Q 008058          155 --FRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHK----KMQKFS------GHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       155 --~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~----~~~~~~------~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                        ..........++|++++..++...   +...+|+.....    ......      ........+.+++++++++..+.
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~  249 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  249 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence              112334678999999999887765   677888765432    122221      12345677899999998888877


Q ss_pred             CCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEE--CCCcee
Q 008058          220 GERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWY--GQNIEE  286 (579)
Q Consensus       220 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd--~~~~~~  286 (579)
                      .++.+.+|++.......  ..............+.|+     |||++|++++. ++.|.+|+  .++|+.
T Consensus       250 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~a~s-----pDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         250 TASLITVFSVSEDGSVL--SKEGFQPTETQPRGFNVD-----HSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             TTTEEEEEEECTTSCCE--EEEEEEECSSSCCCEEEC-----TTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             cCCeEEEEEEcCCCCEE--EEEEEeCCCCCeeEEEEe-----CCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            78899999987664331  111112222334456777     99999887765 68999995  455543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1.2e-15  Score=148.17  Aligned_cols=244  Identities=11%  Similarity=-0.032  Sum_probs=164.0

Q ss_pred             EEEEccCCCEEE-EEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFA-ICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~la-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++|+|||++++ +++.++.|++||+.+++.+..+........            .......+.+.+.         +..
T Consensus        44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~------------~~~~~~~v~~s~D---------G~~  102 (346)
T d1jmxb_          44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE------------VGRSMYSFAISPD---------GKE  102 (346)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE------------EEECSSCEEECTT---------SSE
T ss_pred             eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc------------cCCceEEEEEecC---------CCE
Confidence            559999999875 555789999999999998877653322110            0001112222221         455


Q ss_pred             EEEEE------------CCCeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEe
Q 008058           89 LVLGT------------GGGDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        89 l~~~~------------~~g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  155 (579)
                      ++++.            .++.+.+|+..+++....+.. .....+..+.+++++..+++   ++.+.+||+.+++.+..+
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  179 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVAL  179 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEE
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEE
Confidence            55543            467799999988765432211 12234666777777765554   355899999999888887


Q ss_pred             ecCCCCeeEEEEccCCCEEE--------------------------EEC--CeEEEEECCCCeeeE-EeecCCCCEEEEE
Q 008058          156 RASTKGISCMAVSSDGKMLA--------------------------TAA--GQLKTFNCSDHKKMQ-KFSGHPGAVRFMT  206 (579)
Q Consensus       156 ~~~~~~v~~l~~~p~g~~l~--------------------------~~~--g~i~vwd~~~~~~~~-~~~~h~~~v~~l~  206 (579)
                      ..+. ....+.++|++..++                          ++.  +.+.+||..++.... .+..|...+..+.
T Consensus       180 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (346)
T d1jmxb_         180 PLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL  258 (346)
T ss_dssp             CSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             ecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence            6543 233444555544322                          111  468888988876544 4567888899999


Q ss_pred             EecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          207 FSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       207 ~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      +++++.++++..  ++.|.+||..+++..     ....... .+..++|+     |||++|++++.||.|++||.++++.
T Consensus       259 ~~~~~~~~~~~~--~~~v~v~d~~~~~~~-----~~~~~~~-~~~~va~s-----~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         259 RSPKDPNQIYGV--LNRLAKYDLKQRKLI-----KAANLDH-TYYCVAFD-----KKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             ECSSCTTEEEEE--ESEEEEEETTTTEEE-----EEEECSS-CCCEEEEC-----SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EeCCCCEEEEec--CCeEEEEECCCCcEE-----EEEcCCC-CEEEEEEc-----CCCCEEEEEeCCCcEEEEECccCCE
Confidence            999998888765  568999999988643     3333322 35567787     9999999999999999999999998


Q ss_pred             ecccC
Q 008058          287 LRNTK  291 (579)
Q Consensus       287 ~~~~~  291 (579)
                      +..++
T Consensus       326 i~~i~  330 (346)
T d1jmxb_         326 VKNIK  330 (346)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.65  E-value=7.9e-14  Score=136.98  Aligned_cols=245  Identities=9%  Similarity=-0.010  Sum_probs=163.1

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|||||++|++++          .++.|.|||..+++....+..+..........           ...+.|.+.    
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~s~d----  135 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-----------SWMNANTPN----  135 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccC-----------CCcEEEEeC----
Confidence            59999999999875          35789999999999988876554332211111           123444443    


Q ss_pred             ccccCCcEEEEE--ECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeeEeec
Q 008058           81 KRKLGSSLLVLG--TGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADGMVCEIDPLTGSLLGKFRA  157 (579)
Q Consensus        81 ~~~~~~~~l~~~--~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~  157 (579)
                           +..+++.  ..++.+.+|+....+...     +.....++.|+|+|+. +++.+.|+.+.+||...+........
T Consensus       136 -----g~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         136 -----NADLLFFQFAAGPAVGLVVQGGSSDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             -----CCcEEEEEEcCCCceEEeeccCCeEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence                 3333333  445668899988877653     3345678899999876 46788999999999988877665443


Q ss_pred             CC------CCeeEEEEccCCCEEEEEC-CeEEEEECCCCeee--EEeecCC----------CCEEEEEEecCCCEEEEEe
Q 008058          158 ST------KGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       158 ~~------~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~--~~~~~h~----------~~v~~l~~~~~~~~l~s~s  218 (579)
                      +.      .....+.+++++.+++.+. +.+++|+..++...  ..+..+.          .....+.+++++..++...
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  285 (373)
T d2madh_         206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT  285 (373)
T ss_pred             eccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec
Confidence            22      2334566777777777666 89999998876532  2222221          2234456666665544321


Q ss_pred             ---------cCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcE--EEEEEcCCeEEEEECCCceee
Q 008058          219 ---------VGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       219 ---------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~  287 (579)
                               ..++.+.+||..+++..     ..+.+.. ....+.|+     |||+.  +++++.|+.|++||..+++.+
T Consensus       286 ~~~~~~~~~~~~~~v~~~d~~t~~~~-----~~~~~~~-~~~~~a~s-----pDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         286 SEQSAWKLHAAAKEVTSVTGLVGQTS-----SQISLGH-DVDAISVA-----QDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCCceEEeecCCCeEEEEECCCCcEE-----EEecCCC-CeeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence                     24678999999888643     3343333 34566777     99984  467888999999999999988


Q ss_pred             cccC
Q 008058          288 RNTK  291 (579)
Q Consensus       288 ~~~~  291 (579)
                      +...
T Consensus       355 ~~~~  358 (373)
T d2madh_         355 QSTV  358 (373)
T ss_pred             EEEC
Confidence            7664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.65  E-value=5.2e-15  Score=144.44  Aligned_cols=188  Identities=9%  Similarity=-0.035  Sum_probs=131.6

Q ss_pred             EEccCCCEEEEEe-----CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCC
Q 008058           12 SFSPALDYFAICS-----GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGS   86 (579)
Q Consensus        12 ~fs~dg~~las~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~   86 (579)
                      +.+|||+.++...     .+++|.+||..+++.+.++..+..+  .+.|+++                           +
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpD---------------------------g   58 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADD---------------------------G   58 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT---------------------------S
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCC---------------------------C
Confidence            7799999887653     3567999999999998877643221  2344444                           5


Q ss_pred             cEEEEE----------ECCCeEEEEEccCCeEEEEecC--CC----CCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCC
Q 008058           87 SLLVLG----------TGGGDVLALAVSAGQLKWRLSD--CH----PGGVSAISFATHGSCIYSAG--ADGMVCEIDPLT  148 (579)
Q Consensus        87 ~~l~~~----------~~~g~i~iwd~~~~~~~~~~~~--~h----~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~  148 (579)
                      +.|++.          ..++.|.+||+.+++.+..+..  .+    ......+.|+|+|++++.++  .+..+.+||..+
T Consensus        59 ~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  138 (355)
T d2bbkh_          59 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  138 (355)
T ss_dssp             SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC
Confidence            555543          4578899999999988765531  11    22345689999999987764  567899999999


Q ss_pred             CceeeEeecCCC-------CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEe
Q 008058          149 GSLLGKFRASTK-------GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       149 ~~~~~~~~~~~~-------~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ++.+..+..+..       ....+.+++||+.++...   +.+.+++.....     ..+...+....+.+++..++.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d2bbkh_         139 KAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPT  213 (355)
T ss_dssp             TEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEB
T ss_pred             CcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEec
Confidence            988887765432       234567777877776654   566666655432     23444455667888888888876


Q ss_pred             cCCCeEEEEEcCCCcc
Q 008058          219 VGERYIALWRTDGVKK  234 (579)
Q Consensus       219 ~~d~~i~vwd~~~~~~  234 (579)
                       .++.+++|++..++.
T Consensus       214 -~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         214 -YTGKIHQIDLSSGDA  228 (355)
T ss_dssp             -TTSEEEEEECTTSSC
T ss_pred             -CCCeEEEEecCCCcE
Confidence             799999999988753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.59  E-value=1.5e-13  Score=134.61  Aligned_cols=247  Identities=8%  Similarity=0.019  Sum_probs=155.7

Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEeccccccccccccccc------------cccccccCccceEEeeecccccccccCCc
Q 008058           20 FAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNR------------LEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus        20 las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +++|+.+|+|+||++.+++.+..+........ ..|..+            +..+  ......+......++      ++
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~-~g~g~~~es~~vl~~~~~~~~g--d~hhP~~s~t~gtpD------Gr   84 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSA-TGWGITNESKEILGGDQQYLNG--DCHHPHISMTDGRYD------GK   84 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTT-TCTTTSHHHHHHHCSSSCCSCC--CBCCCEEEEETTEEE------EE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCC-EEEEECCccceEEecccccccC--cccCCCcceecccCC------CC
Confidence            55777899999999999999988753211000 011100            0000  000111111111222      67


Q ss_pred             EEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE--EEEEeCCC-----------------cEEEEeCC
Q 008058           88 LLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC--IYSAGADG-----------------MVCEIDPL  147 (579)
Q Consensus        88 ~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~~~dg-----------------~v~iwd~~  147 (579)
                      ++++.. .++.|.++|+.+++....+.-.+...+.+++|+|+|+.  ++..+.+.                 .+..+|..
T Consensus        85 ~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~  164 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE  164 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc
Confidence            776665 56779999999999876654456788999999999985  44433332                 23558888


Q ss_pred             CCceeeEeecCCCCeeEEEEccCCCEEEEEC-------------------------------------------CeEEEE
Q 008058          148 TGSLLGKFRASTKGISCMAVSSDGKMLATAA-------------------------------------------GQLKTF  184 (579)
Q Consensus       148 ~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-------------------------------------------g~i~vw  184 (579)
                      +.+....+... ..+..++++|+|+++++++                                           +.+.++
T Consensus       165 t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         165 TMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             TCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             cceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            88777776644 3568899999999887764                                           123334


Q ss_pred             ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccceeEEeeecCceeeEeEEecCC
Q 008058          185 NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSASCVLAMEHPAVFMDCRCIDNG  258 (579)
Q Consensus       185 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                      +....+.+..++...+ ...+.++|||+++++++..+++|.+||+.+...      ....++........-..-..|+  
T Consensus       244 ~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd--  320 (441)
T d1qnia2         244 GRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFD--  320 (441)
T ss_dssp             CSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEEC--
T ss_pred             cccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceec--
Confidence            3444455666665555 478999999999988888899999999865321      1011111111111111223465  


Q ss_pred             cccCCCcEEEEEEcCCeEEEEECC
Q 008058          259 GVDDAGLYVLAISETGVCYIWYGQ  282 (579)
Q Consensus       259 ~~~~~~~~l~s~~~dg~i~iwd~~  282 (579)
                         ++|..+.+...|.+|..|++.
T Consensus       321 ---~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         321 ---GRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             ---SSSEEEEEETTTTEEEEEEHH
T ss_pred             ---CCceEEEcccccceEEEeccc
Confidence               888888888889999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=2.3e-12  Score=125.24  Aligned_cols=246  Identities=11%  Similarity=0.012  Sum_probs=151.9

Q ss_pred             EEEEccCCCEEEEE----------eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccc
Q 008058           10 LTSFSPALDYFAIC----------SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRK   79 (579)
Q Consensus        10 ~~~fs~dg~~las~----------s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~   79 (579)
                      .++|||||++|++.          +.|+.|++||..+++....+..+.......           ......+.|.+.   
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~-----------~~~~~~~~~s~d---  116 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV-----------GTYPWMTSLTPD---  116 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB-----------SCCGGGEEECTT---
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec-----------CCCCceEEEecC---
Confidence            35999999988764          347899999999999888776443222111           111123444433   


Q ss_pred             cccccCCcEEEEEEC--CCeEEEEEccCCeEEEEecCCCC------CCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCc
Q 008058           80 KKRKLGSSLLVLGTG--GGDVLALAVSAGQLKWRLSDCHP------GGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGS  150 (579)
Q Consensus        80 ~~~~~~~~~l~~~~~--~g~i~iwd~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~  150 (579)
                            +..++++..  +..+.+|+..+++.+..+.....      .....+.+++|++.++... .++.+.+++.....
T Consensus       117 ------g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~  190 (355)
T d2bbkh_         117 ------GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  190 (355)
T ss_dssp             ------SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             ------CCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence                  566666653  45699999999988766532211      1122344555555443332 23334444433222


Q ss_pred             eeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeee--EEeecCC----------CCEEEEEEecCCCEEEE
Q 008058          151 LLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKM--QKFSGHP----------GAVRFMTFSDNGKYVLS  216 (579)
Q Consensus       151 ~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~--~~~~~h~----------~~v~~l~~~~~~~~l~s  216 (579)
                      .     .+...+....+.+++..++.++  +.+++|++..++..  .....+.          .....+++++++..++.
T Consensus       191 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         191 P-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             C-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             c-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence            1     1233455567777777777766  89999999877542  2222221          22345889999998776


Q ss_pred             EecCC---------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCc--EEEEEEcCCeEEEEECCCce
Q 008058          217 SAVGE---------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGL--YVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       217 ~s~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~  285 (579)
                      .....         +.|.+||..+++..     ..+... .....+.|+     |||+  ++++++.|+.|++||.++++
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGERL-----AKFEMG-HEIDSINVS-----QDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEE-----EEEEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCcEE-----EEecCC-CCEEEEEEc-----CCCCeEEEEEECCCCEEEEEECCCCC
Confidence            65321         47999999988643     233332 234566777     9987  44566779999999999999


Q ss_pred             eecccC
Q 008058          286 ELRNTK  291 (579)
Q Consensus       286 ~~~~~~  291 (579)
                      .++.+.
T Consensus       335 ~~~~i~  340 (355)
T d2bbkh_         335 ELRSVN  340 (355)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            887654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.49  E-value=9.7e-13  Score=133.63  Aligned_cols=143  Identities=10%  Similarity=0.054  Sum_probs=101.4

Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058            9 ILTSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      ..+.|.+|++++..  .|+.+.+||+.+++....+..+.-.            .+ ...+.+..|.|.         +..
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~------------~~-~~~i~~~~~SpD---------g~~   75 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFD------------EF-GHSINDYSISPD---------GQF   75 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTT------------TS-SSCCCEEEECTT---------SSE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhh------------hc-cCccceeEECCC---------CCE
Confidence            34589999988764  4788999999999887655432210            00 112233334332         777


Q ss_pred             EEEEEC---------CCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC-
Q 008058           89 LVLGTG---------GGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS-  158 (579)
Q Consensus        89 l~~~~~---------~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-  158 (579)
                      |++++.         .+.+.+||+.+++.. . ...|...+..+.|+|||+.++.. .++.+++|+..+++..+....+ 
T Consensus        76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~-l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~  152 (470)
T d2bgra1          76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-T-EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK  152 (470)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEETTTTEEC-C-SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred             EEEEECCcceeeeccCceEEEEECCCCccc-c-cccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccC
Confidence            777754         567999999999864 3 35688899999999999999986 5778999999888765543211 


Q ss_pred             -----------------CCCeeEEEEccCCCEEEEEC
Q 008058          159 -----------------TKGISCMAVSSDGKMLATAA  178 (579)
Q Consensus       159 -----------------~~~v~~l~~~p~g~~l~~~~  178 (579)
                                       .+....+.|+|||+.|+...
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence                             12345688999999999864

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=5.1e-12  Score=123.71  Aligned_cols=246  Identities=9%  Similarity=0.007  Sum_probs=158.6

Q ss_pred             EEEccCCCEEEEEe----------CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccc
Q 008058           11 TSFSPALDYFAICS----------GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKK   80 (579)
Q Consensus        11 ~~fs~dg~~las~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~   80 (579)
                      ++|+|||++|++.+          .|++|++||..+++.+..+..+.......           ......+.|.+.    
T Consensus        70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~-----------g~~p~~~a~SpD----  134 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV-----------GPRVHIIGNCAS----  134 (368)
T ss_dssp             EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB-----------SCCTTSEEECTT----
T ss_pred             ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc-----------cCCccceEECCC----
Confidence            48999999888754          36789999999999988876443221110           111123444443    


Q ss_pred             ccccCCcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeE-----
Q 008058           81 KRKLGSSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGK-----  154 (579)
Q Consensus        81 ~~~~~~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----  154 (579)
                           +++++++. .++.+.+||+.+++....+.. +.....   +......++..+.||.+..|++........     
T Consensus       135 -----Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         135 -----SACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             -----SSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             -----CCEEEEEeCCCCeEEEEECCCCcEeEEeec-cCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence                 66677776 568899999999998866633 222211   112344566677888888888765433222     


Q ss_pred             -eecCCCCeeEEEEccCCCEEEEECCeEEEEECCCCeeeEEe--ecCC----------CCEEEEEEecCCCEEEEEecCC
Q 008058          155 -FRASTKGISCMAVSSDGKMLATAAGQLKTFNCSDHKKMQKF--SGHP----------GAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       155 -~~~~~~~v~~l~~~p~g~~l~~~~g~i~vwd~~~~~~~~~~--~~h~----------~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                       +..+...+....+.+++..+.+.++.+++++...+......  ..+.          .....++++|++..++.....+
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence             22234456678888998888877788888888766543221  1111          1224578899988776654222


Q ss_pred             --------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcE--EEEEEcCCeEEEEECCCceeecccC
Q 008058          222 --------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLY--VLAISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       222 --------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                              ..|.+||..+++..     ..+... .....+.|+     |||+.  ++++..|+.|++||..+++.++.++
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~-----~~~~~~-~~~~~~a~s-----pDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTS-----GPISNG-HDSDAIIAA-----QDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEE-----ECCEEE-EEECEEEEC-----CSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CceeecCCceEEEEECCCCcEe-----EEecCC-CceeEEEEC-----CCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence                    35899999988643     233322 344567777     89873  4555678999999999999887664

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=2e-11  Score=119.34  Aligned_cols=265  Identities=9%  Similarity=-0.062  Sum_probs=150.8

Q ss_pred             CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCCceeeEeecCCC-----
Q 008058           96 GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG----------ADGMVCEIDPLTGSLLGKFRASTK-----  160 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~-----  160 (579)
                      ..|.+||..+++.+..+. .+..+  .++|+|||+.|++.+          .|+.|.+||..+++.+..+..+..     
T Consensus        46 ~~~~~~d~~~~~~~~~~~-~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~  122 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSL-GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV  122 (368)
T ss_dssp             EEEEEEETTTTEEEEEEE-ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred             ceEEEEeCCCCcEEEEEe-CCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence            347888999999887764 33333  589999999988764          367899999999999888765432     


Q ss_pred             --CeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          161 --GISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       161 --~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                        ....++|+|||++++++.   +.+.+||+.+++.+..+..+.....   +......++..+ .||.+.+|++......
T Consensus       123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~-~Dg~~~~~~~~~~~~~  198 (368)
T d1mdah_         123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGS-CPASLAASDLAAAPAA  198 (368)
T ss_dssp             SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCC-CTTSCEEEECCSSCCC
T ss_pred             cCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEc-CCCCEEEEEecCCcee
Confidence              234689999999998775   8999999999999888876554321   112233444444 6888888887765432


Q ss_pred             ccee-EEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc--CCce-------EEee--ecccC
Q 008058          236 SASC-VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT--KATK-------ILSS--SEDVN  303 (579)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-------~~~~--~~~~~  303 (579)
                      .... ...............+.     +++..+.+  ..+.+++++..........  ....       ....  ....+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~  271 (368)
T d1mdah_         199 AGIVGAQCTGAQNCSSQAAQAN-----YPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEET-----TTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             eeeeecccccccccceeecccc-----cCcEEEEe--cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEE
Confidence            1000 00011122222333443     55555443  3456666665544332111  0000       0000  00001


Q ss_pred             cccccccchhhhhccccc--eecCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecCCcc-eeeccccceecccceeee
Q 008058          304 SKSQKSATAAIFAAKLQD--IVKPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQDGV-LLPMSQSLLKSKRGRYVQ  380 (579)
Q Consensus       304 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~s~s~d~~~~~w~~~  380 (579)
                      ++++.    .++....++  ........+++.+-. .......+. +...+..++|||||+ ++.++++.|+++++||..
T Consensus       272 ~~~~~----~~~v~~~~~~~~~~~~~~~v~v~D~~-t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         272 LKNTD----GIMILTVEHSRSCLAAAENTSSVTAS-VGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             ETTTT----EEEEEEEECSSCTTSCEEEEEEEESS-SCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             cCCCC----EEEEEecCCCceeecCCceEEEEECC-CCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            22222    222211111  111112234443322 222222222 234678899999997 344778889999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.24  E-value=1.6e-08  Score=93.96  Aligned_cols=242  Identities=14%  Similarity=0.163  Sum_probs=155.7

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++++|+|+.+++-...++|++||.+ |..+..+...... ....+.+           ..+.+....        +..++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~-~~~~~~p-----------~~~~~~~~~--------~~~~~   86 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR-DSQLLYP-----------NRVAVVRNS--------GDIIV   86 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS-TTCBSSE-----------EEEEEETTT--------TEEEE
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC-ccccccc-----------ccccccccc--------cccce
Confidence            4899999988776678899999965 7777766422111 1111111           111222111        33333


Q ss_pred             EEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCCCeeEEEE
Q 008058           91 LGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGISCMAV  167 (579)
Q Consensus        91 ~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~l~~  167 (579)
                      +.. .++.|..++. .+.....+.........++++.++|+.+++....+.+.+++. +++.+.++..  +......+++
T Consensus        87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          87 TERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             EECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEE
T ss_pred             eccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeee
Confidence            333 3345777765 455554554455667889999999998888777888999985 5777776643  3457889999


Q ss_pred             ccCCCEEEEEC--CeEEEEECCCCeeeEEee--cCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee
Q 008058          168 SSDGKMLATAA--GQLKTFNCSDHKKMQKFS--GHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM  243 (579)
Q Consensus       168 ~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~  243 (579)
                      .++|+++++..  +.|++||. +++.+.++.  ++......|++.++|+.+++-...++.|.+|+.. ++..   ..+..
T Consensus       165 d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G~~~---~~~~~  239 (279)
T d1q7fa_         165 NDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI---SALES  239 (279)
T ss_dssp             CSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE---EEEEE
T ss_pred             ccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-CCEE---EEEeC
Confidence            99998877776  89999996 456676763  3455678999999999777654335579999854 3322   11221


Q ss_pred             ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCcee
Q 008058          244 EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEE  286 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  286 (579)
                      .........+++.     |+|.++ +++.+++|++|......+
T Consensus       240 ~~~~~~p~~vav~-----~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         240 KVKHAQCFDVALM-----DDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             SSCCSCEEEEEEE-----TTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             CCCCCCEeEEEEe-----CCCcEE-EEeCCCeEEEEEeeeecC
Confidence            2222233455565     888754 456789999999876643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=1.5e-08  Score=98.24  Aligned_cols=161  Identities=14%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             CCEEEEEEccCCCEEEEEeC-CCcEEEEeCCC-Ccee--eEee--cCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC
Q 008058          118 GGVSAISFATHGSCIYSAGA-DGMVCEIDPLT-GSLL--GKFR--ASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD  188 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~-dg~v~iwd~~~-~~~~--~~~~--~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~  188 (579)
                      ..+.++.|+|||+++++++. ...|.+|+... +...  ....  ........++|+|+|+++++..   ++|.+|+...
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            45789999999999888764 45788887543 3322  1222  2345789999999999887765   8999999876


Q ss_pred             CeeeE--E---ee--------------cCCCCEEEEEEecCCCEEEEEecCCC-----eEEEEEcCCCcccc-ceeEEee
Q 008058          189 HKKMQ--K---FS--------------GHPGAVRFMTFSDNGKYVLSSAVGER-----YIALWRTDGVKKQS-ASCVLAM  243 (579)
Q Consensus       189 ~~~~~--~---~~--------------~h~~~v~~l~~~~~~~~l~s~s~~d~-----~i~vwd~~~~~~~~-~~~~~~~  243 (579)
                      ++...  .   ..              .+......+.++|+|++++++...+.     .|..|++....... .......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            54321  1   11              11123567899999999988754333     37777776543221 0111111


Q ss_pred             ecCceeeEeEEecCCcccC-CCcEEEEEE-cCCeEEEEECCC
Q 008058          244 EHPAVFMDCRCIDNGGVDD-AGLYVLAIS-ETGVCYIWYGQN  283 (579)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~-~~~~l~s~~-~dg~i~iwd~~~  283 (579)
                      .........+.++     | +|++|+++. .++.|.+|+.+.
T Consensus       305 ~~~G~~p~~i~~~-----p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         305 PTSGGHSNAVSPC-----PWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSCCTTCCCEEEC-----TTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EcCCCCccEEEec-----CCCCCEEEEEeCCCCeEEEEEEeC
Confidence            1122223445565     6 789887775 578999997644

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.15  E-value=5.7e-09  Score=101.21  Aligned_cols=282  Identities=10%  Similarity=0.015  Sum_probs=154.9

Q ss_pred             EEEEEEC--CCeEEEE--EccCCeE--EEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeeEe-ecCC
Q 008058           88 LLVLGTG--GGDVLAL--AVSAGQL--KWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLT-GSLLGKF-RAST  159 (579)
Q Consensus        88 ~l~~~~~--~g~i~iw--d~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~-~~~~  159 (579)
                      .|++|+.  .+.|+.+  |.++++.  +..........+..++|+|+++.|+++.. +.+..|.+.. +...... ....
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~   82 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence            4777864  4566554  4555554  22222234456778999999999998865 5577776653 3222221 1223


Q ss_pred             CCeeEEEEccCCCE--EEEEC---CeEEEEECCC-Cee---------------eEEe-ecCCCCEEEEEEecCCCEEEEE
Q 008058          160 KGISCMAVSSDGKM--LATAA---GQLKTFNCSD-HKK---------------MQKF-SGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       160 ~~v~~l~~~p~g~~--l~~~~---g~i~vwd~~~-~~~---------------~~~~-~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      .....++++++++.  ++++.   ++|..+.+.. +..               .... ......+.++.|+|+|++++++
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~  162 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence            45677888999984  44443   5666554422 111               1111 1122347899999999999998


Q ss_pred             ecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEc-CCeEEEEECCCceeecccCCceE-
Q 008058          218 AVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISE-TGVCYIWYGQNIEELRNTKATKI-  295 (579)
Q Consensus       218 s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~-  295 (579)
                      ......|.+|+........................+.|+     |+++++.+..+ +++|.+|+.+............. 
T Consensus       163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-----pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~  237 (365)
T d1jofa_         163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-----PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP  237 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred             eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEEC-----CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec
Confidence            766778999987654322111111112233445667777     99999877765 88999999876543211100000 


Q ss_pred             -----------------EeeecccCcccccccchhhhhcccc-ceecCCceEEEEEeCCCCCceeEEEe-----cCCCCc
Q 008058          296 -----------------LSSSEDVNSKSQKSATAAIFAAKLQ-DIVKPASVHTFVAYGLLLKPSFQKIL-----VNSGED  352 (579)
Q Consensus       296 -----------------~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~-----~h~~~v  352 (579)
                                       .......++++++    .++++... ....  .+.+....-.......+...     ......
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~i~~spdG~----~lyvsnr~~~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p  311 (365)
T d1jofa_         238 LIPPGIPDRDPETGKGLYRADVCALTFSGK----YMFASSRANKFEL--QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHS  311 (365)
T ss_dssp             SSCTTCCCBCTTTSSBSEEEEEEEECTTSS----EEEEEEEESSTTS--CCEEEEEEECTTSCEEEEEEEEECSSCCTTC
T ss_pred             cccccccccccccccccCCccceEECCCCC----EEEEEcccCCCcc--ceEEEEEEecCCCceeeEeEeeEEEcCCCCc
Confidence                             0111112456666    55544321 1111  11121111111111111111     122345


Q ss_pred             EEEeecC-Ccceeeccccceecccceeeee
Q 008058          353 INLNCSQ-DGVLLPMSQSLLKSKRGRYVQN  381 (579)
Q Consensus       353 ~~~~~s~-dg~~l~~s~s~d~~~~~w~~~~  381 (579)
                      ..++++| +|++|.++...+++|.+|++..
T Consensus       312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             cEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            6788998 8998867778899999998753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=4.4e-10  Score=109.64  Aligned_cols=231  Identities=8%  Similarity=0.015  Sum_probs=140.0

Q ss_pred             EEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccc-cccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADI-ASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      .++|||++|+... .+++|.++|+.++++...+.-. ...+....|+++   +.                      ..++
T Consensus        78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spd---g~----------------------t~YV  132 (441)
T d1qnia2          78 DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV---PK----------------------TNYV  132 (441)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCS---SB----------------------CCEE
T ss_pred             cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEecc---CC----------------------EEEE
Confidence            4689999987665 5889999999999988766532 333444455544   11                      1122


Q ss_pred             EEEECC-----------------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC--------------
Q 008058           90 VLGTGG-----------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------------  138 (579)
Q Consensus        90 ~~~~~~-----------------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--------------  138 (579)
                      +..+.+                 ..+..+|..+.+...++..+  +....+.|+|+|+++++++.+              
T Consensus       133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~  210 (441)
T d1qnia2         133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRND  210 (441)
T ss_dssp             EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS
T ss_pred             EeccCCcccccCcccccccccccceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcce
Confidence            222211                 12466888888877666432  457889999999998877643              


Q ss_pred             ---------------------------CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCC
Q 008058          139 ---------------------------GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSD  188 (579)
Q Consensus       139 ---------------------------g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~  188 (579)
                                                 +.+.+++....+.+..+.... ....+.++|||+++++++   ++|.+||+++
T Consensus       211 ~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         211 RDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             BCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                                       344455545555566666544 457899999999988876   8999999865


Q ss_pred             Cee--------eEEeecC---CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC------ccccceeEEeeecCceeeE
Q 008058          189 HKK--------MQKFSGH---PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV------KKQSASCVLAMEHPAVFMD  251 (579)
Q Consensus       189 ~~~--------~~~~~~h---~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~  251 (579)
                      .+.        ...+.++   .-......|.++|..+.+. .-|..|..|++...      ... ...+..+.-+-..=.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~-~~ds~v~kw~~~~~~~~~~~~~~-~~v~~~~~v~y~~GH  367 (441)
T d1qnia2         290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTL-FIDSQVCKWNIADAIKHYNGDRV-NYIRQKLDVQYQPGH  367 (441)
T ss_dssp             HHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE-TTTTEEEEEEHHHHHHHHTTCCC-CCEEEEEECSSCEEE
T ss_pred             hhhHhhccCCcceEEEeecccccCcccceecCCceEEEcc-cccceEEEeccchhhhhhccCCC-ceeEeccccccCCCC
Confidence            221        1111111   1224456899998655554 47999999998421      111 011122221111111


Q ss_pred             eEEecCCcccCCCcEEEEEEc
Q 008058          252 CRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      ........++|||+||++++.
T Consensus       368 ~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         368 NHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEETTTTSTTCCCCEEEEEES
T ss_pred             CccccccccCCCCcEEEecCc
Confidence            111122234599999999954

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=7.2e-10  Score=111.95  Aligned_cols=150  Identities=14%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             ccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEe----cCCCCCCEEEEEEccCCCEEEEEeC-----
Q 008058           67 DYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRL----SDCHPGGVSAISFATHGSCIYSAGA-----  137 (579)
Q Consensus        67 ~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~----~~~h~~~V~~l~~~~~~~~l~s~~~-----  137 (579)
                      ....+.|.+.         +.++.  ..++.+.+||+.+++....+    +..|...|.++.|+|||++|+.++.     
T Consensus        18 ~~~~~~W~~d---------~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~   86 (470)
T d2bgra1          18 KLYSLRWISD---------HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCCCCEECSS---------SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred             cccCCEeCCC---------CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence            3345677763         44443  56889999999999875333    2345678999999999999988753     


Q ss_pred             ----CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeec---------------
Q 008058          138 ----DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSG---------------  197 (579)
Q Consensus       138 ----dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~---------------  197 (579)
                          ++.+.+||+.+++. ..+..+...+..+.|+|||+.+|... +.+++|+..+++..+....               
T Consensus        87 r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~  165 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (470)
T ss_dssp             SSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             eeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceee
Confidence                56789999998764 45777888999999999999999887 8999999998876543321               


Q ss_pred             ---CCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          198 ---HPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       198 ---h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                         ..+....+.|+|||++++....++..+..|.
T Consensus       166 ~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             eeeecCCccccEECCCCCccceeEecCCcCceEE
Confidence               1233456889999999999875344355444

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=5.4e-08  Score=89.30  Aligned_cols=231  Identities=9%  Similarity=-0.049  Sum_probs=132.7

Q ss_pred             EEEEccCCCEEEEE-eCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcE
Q 008058           10 LTSFSPALDYFAIC-SGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSL   88 (579)
Q Consensus        10 ~~~fs~dg~~las~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~   88 (579)
                      .++++++|+..++. +..+.+..++..+.............                  ...+++.+.         +.+
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------p~gvav~~~---------g~i   70 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ------------------PQGLAVDGA---------GTV   70 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCS------------------CCCEEECTT---------CCE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccC------------------ceEEEEcCC---------CCE
Confidence            45899999965554 45577777765433322111100001                  112222221         454


Q ss_pred             EEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEc
Q 008058           89 LVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVS  168 (579)
Q Consensus        89 l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~  168 (579)
                      +++....+.+++++-.++..+..  ........++++.++|+++++-..+..+..++...................++++
T Consensus        71 ~v~d~~~~~i~~~~~~~~~~~~~--~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          71 YVTDFNNRVVTLAAGSNNQTVLP--FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             EEEETTTEEEEECTTCSCCEECC--CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred             EEeeeeeceeeeeeeccceeeee--eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence            44444444455555444444322  2233568999999999887776677778888765433222211223356889999


Q ss_pred             cCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC
Q 008058          169 SDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       169 p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      |+|+++++..  +.|..+|...................|++.++|+.+++.. ..+.|..++.......    ... ...
T Consensus       149 ~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~~----~~~-~~~  222 (260)
T d1rwia_         149 NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTST----VLP-FTG  222 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCCE----ECC-CCS
T ss_pred             CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeEE----EEc-cCC
Confidence            9999877765  7899999775543332234456678999999998766654 6788888876554321    111 111


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEE
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWY  280 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd  280 (579)
                      -.....++++     ++|..+++-..+++|+.++
T Consensus       223 ~~~P~~i~~d-----~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         223 LNTPLAVAVD-----SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCCEEEEEEC-----TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCeEEEEEe-----CCCCEEEEECCCCEEEEEe
Confidence            1223456665     7887766656667776654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.93  E-value=1.7e-07  Score=88.07  Aligned_cols=224  Identities=10%  Similarity=0.038  Sum_probs=139.1

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++++|||+++++...+++|..|+... .... +........                  ++++.+.         +++++
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~-~~~~~~~~~------------------gla~~~d---------G~l~v   83 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDG-NQQI-HATVEGKVS------------------GLAFTSN---------GDLVA   83 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTC-CEEE-EEECSSEEE------------------EEEECTT---------SCEEE
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCC-CEEE-EEcCCCCcc------------------eEEEcCC---------CCeEE
Confidence            59999999999988899888888653 3222 222222222                  3333332         77888


Q ss_pred             EEECCCeEEEEEccCCe--EEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--------C--
Q 008058           91 LGTGGGDVLALAVSAGQ--LKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--------S--  158 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~--  158 (579)
                      +...++.+..|+.....  ..............++.+.++|+++++.+.++.+..+|...+........        +  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (302)
T d2p4oa1          84 TGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV  163 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred             EecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCc
Confidence            88888888888876432  22222223456789999999999888888899999999877653322211        1  


Q ss_pred             CCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeee---EEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          159 TKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKM---QKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       159 ~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      ......+.++  +..++.+.   +.|+.++.......   ..+. +......++|.++|+++++.. .++.|..++....
T Consensus       164 ~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~G~  239 (302)
T d2p4oa1         164 FPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPDRS  239 (302)
T ss_dssp             SCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECB-TTCCEEEECTTCC
T ss_pred             cccccccccc--CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEc-CCCcEEEECCCCC
Confidence            1244566665  34444443   78888887654322   1222 233456799999998766655 6888888877653


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET  273 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d  273 (579)
                      ..    .+............++|....  +|++.|++++..
T Consensus       240 ~~----~~~~~~~~~~~pt~vafg~~~--~D~~~Lyvtt~~  274 (302)
T d2p4oa1         240 TT----IIAQAEQGVIGSTAVAFGQTE--GDCTAIYVVTNG  274 (302)
T ss_dssp             EE----EEECGGGTCTTEEEEEECCST--TTTTEEEEEECT
T ss_pred             EE----EEEecCCCCCCceEEEEcCCC--CCCCEEEEECCC
Confidence            21    122233333445667773211  677888776554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.87  E-value=1.4e-06  Score=81.85  Aligned_cols=235  Identities=14%  Similarity=0.128  Sum_probs=141.9

Q ss_pred             EEEccCCCEEEEEeC-------CCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccc
Q 008058           11 TSFSPALDYFAICSG-------DARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRK   83 (579)
Q Consensus        11 ~~fs~dg~~las~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~   83 (579)
                      .+|+|+|+++++...       +|+|..||..++.............              ......+.+.+.       
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~--------------~g~P~Gl~~~~d-------   81 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGY--------------GGIPAGCQCDRD-------   81 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTE--------------ECCEEEEEECSS-------
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccC--------------CCcceeEEEeCC-------
Confidence            389999997765432       4678889988776543322111000              001112333322       


Q ss_pred             cCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC----CCEEEEEEccCCCEEEEEeC---------------CCcEEEE
Q 008058           84 LGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP----GGVSAISFATHGSCIYSAGA---------------DGMVCEI  144 (579)
Q Consensus        84 ~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~----~~V~~l~~~~~~~~l~s~~~---------------dg~v~iw  144 (579)
                        ++.++++...+.|..++...+...... ....    ...+++++.++|+..++-..               +|.|+.+
T Consensus        82 --g~~l~vad~~~~i~~~~~~g~~~~~~~-~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          82 --ANQLFVADMRLGLLVVQTDGTFEEIAK-KDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             --SSEEEEEETTTEEEEEETTSCEEECCS-BCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             --CCEEEEEECCCeEEEEeCCCcEEEEEe-ccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEE
Confidence              667888887778999998766543211 1111    13678999999987766422               2456556


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCC----EEEEEC---CeEEEEECCCCeee------EEeec-CCCCEEEEEEecC
Q 008058          145 DPLTGSLLGKFRASTKGISCMAVSSDGK----MLATAA---GQLKTFNCSDHKKM------QKFSG-HPGAVRFMTFSDN  210 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~----~l~~~~---g~i~vwd~~~~~~~------~~~~~-h~~~v~~l~~~~~  210 (579)
                      +. .++...... .-...+.++|+|++.    .|+++.   +.|+.||+.....+      ..+.+ +......+++.++
T Consensus       159 ~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         159 TT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             CT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             ee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            54 344333322 233457899999775    455543   78998887643222      12222 2233568999999


Q ss_pred             CCEEEEEecCCCeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEE-EEEEcCCeEEEEECC
Q 008058          211 GKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYV-LAISETGVCYIWYGQ  282 (579)
Q Consensus       211 ~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~  282 (579)
                      |+..++.. ..+.|.+||.+.+...     ..+..+....+.++|.     |+++.| ++.+.+|.|..+++.
T Consensus       237 GnlyVa~~-~~g~I~~~dp~~g~~~-----~~i~~p~~~~t~~afg-----~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         237 NNLLVANW-GSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFK-----PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCEEEEEE-TTTEEEEECTTCBSCS-----EEEECSSSCEEEEEEC-----TTSSEEEEEETTTTEEEEEECS
T ss_pred             CcEEEEEc-CCCEEEEEeCCCCEEE-----EEEECCCCCEEEEEEe-----CCCCEEEEEECCCCcEEEEECC
Confidence            99777665 5889999998876533     2333444456678887     888755 555567888888864

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-07  Score=94.13  Aligned_cols=198  Identities=8%  Similarity=0.041  Sum_probs=119.3

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      .|.+++.++.. ..+|.|.+||+.+++....+......               ........|.+.         ++.++.
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~~SpD---------~~~vl~   77 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE---------------SLRAIRYEISPD---------REYALF   77 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT---------------TTTCSEEEECTT---------SSEEEE
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccc---------------ccccceeEECCC---------CCeEEE
Confidence            68888876643 45789999999888754433321110               011112222221         666666


Q ss_pred             EEC---------CCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec-CCC
Q 008058           92 GTG---------GGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA-STK  160 (579)
Q Consensus        92 ~~~---------~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~  160 (579)
                      .+.         .+.+.+||+.++...... .......+....|+|||+.++... ++.|++.+..++..++.... ..+
T Consensus        78 ~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~  156 (465)
T d1xfda1          78 SYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEG  156 (465)
T ss_dssp             EESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTT
T ss_pred             EEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcc
Confidence            643         567999999988764221 122334566789999999988874 67799998877665544321 111


Q ss_pred             C-----------------eeEEEEccCCCEEEEEC---C---------------------------------eEEEEECC
Q 008058          161 G-----------------ISCMAVSSDGKMLATAA---G---------------------------------QLKTFNCS  187 (579)
Q Consensus       161 ~-----------------v~~l~~~p~g~~l~~~~---g---------------------------------~i~vwd~~  187 (579)
                      .                 -.++-|||||+.||...   .                                 .+.++|+.
T Consensus       157 ~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~  236 (465)
T d1xfda1         157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (465)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             eeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecC
Confidence            1                 24678999999998753   1                                 23455554


Q ss_pred             CCeeeEEe------ecCCCCEEEEEEecCCCEEEEEecCCC---eEEEEEcCCCccc
Q 008058          188 DHKKMQKF------SGHPGAVRFMTFSDNGKYVLSSAVGER---YIALWRTDGVKKQ  235 (579)
Q Consensus       188 ~~~~~~~~------~~h~~~v~~l~~~~~~~~l~s~s~~d~---~i~vwd~~~~~~~  235 (579)
                      ++......      ......+..+.|+|+++.++.....+.   .+.++|..+++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         237 GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             CCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence            43321111      111223677899999987666543232   5788888887643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.79  E-value=2.9e-06  Score=79.97  Aligned_cols=224  Identities=12%  Similarity=0.099  Sum_probs=129.9

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++|+++|+..++-...++|..|+..++.....+.........+.+.++                           +.+++
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~d---------------------------G~l~v   97 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKD---------------------------GRLFV   97 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTT---------------------------SCEEE
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCC---------------------------CCEEE
Confidence            388999986666667888888888776655444322222222222222                           55555


Q ss_pred             EEECC----CeEEEEEccCCeEEEEecC-CCCCCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCCceeeEeecCC
Q 008058           91 LGTGG----GDVLALAVSAGQLKWRLSD-CHPGGVSAISFATHGSCIYSAGA------DGMVCEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        91 ~~~~~----g~i~iwd~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~  159 (579)
                      +...+    +.+...+..++........ .-......+.+.++|++.++...      .+.+..++.. ++.+..+...-
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~  176 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNI  176 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeecc
Confidence            54332    3355555555544322211 12345789999999986655422      2346666654 33333333233


Q ss_pred             CCeeEEEEccCCCEEEEEC---CeEEEEECCCC-eeeEE-------eecCCCCEEEEEEecCCCEEEEEecCCCeEEEEE
Q 008058          160 KGISCMAVSSDGKMLATAA---GQLKTFNCSDH-KKMQK-------FSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWR  228 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~-~~~~~-------~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd  228 (579)
                      ...+.++|+|+++.|+.+.   +.|+.|++... .....       ..........|++.++|+..++.. ..+.|.+|+
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCCEEEEEC
Confidence            4568899999999777665   89999998642 11111       111122356899999999777665 689999999


Q ss_pred             cCCCccccceeEEeeec----CceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          229 TDGVKKQSASCVLAMEH----PAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       229 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      .. ++..   ....+..    ......+++|.     +++..+++.+.
T Consensus       256 p~-G~~l---~~i~~P~~~~~~~~~~~~~~~~-----~~~~~~~~t~~  294 (319)
T d2dg1a1         256 KR-GYPI---GQILIPGRDEGHMLRSTHPQFI-----PGTNQLIICSN  294 (319)
T ss_dssp             TT-SCEE---EEEECTTGGGTCSCBCCEEEEC-----TTSCEEEEEEE
T ss_pred             CC-CcEE---EEEeCCCcCCCcCceeeeEEEe-----CCCCEEEEEcC
Confidence            64 5432   1122211    12234566776     66666666544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=5e-06  Score=75.87  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=115.4

Q ss_pred             CcEEEEEECCC---eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC-CCcE--EEEeCCCCceeeEeecCC
Q 008058           86 SSLLVLGTGGG---DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA-DGMV--CEIDPLTGSLLGKFRAST  159 (579)
Q Consensus        86 ~~~l~~~~~~g---~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~-dg~v--~iwd~~~~~~~~~~~~~~  159 (579)
                      ++.|+......   .+.+.+...+......  .+........|+|+|+.++.... ++..  ..+........ ......
T Consensus        50 Gk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  126 (269)
T d2hqsa1          50 GSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR  126 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS
T ss_pred             CCEEEEEEeeccCcceeeeecccCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeecc
Confidence            77777765544   3777777776654333  46778899999999999877653 3332  23333222222 222234


Q ss_pred             CCeeEEEEccCCCEEEEEC-----CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          160 KGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .......+++++..+....     ..|.+.++..+.. ..+..+........|+|+++.++..+...+...+|.......
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~  205 (269)
T d2hqsa1         127 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  205 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred             ccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccc
Confidence            4455667778777666543     3677778776643 334456677788899999999988876666656655443322


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcC---CeEEEEECCCcee
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISET---GVCYIWYGQNIEE  286 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~  286 (579)
                      .   . ..... ........|+     |||++|+..+..   ..|++++++.+..
T Consensus       206 ~---~-~~~~~-~~~~~~p~~S-----PDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         206 G---V-QVLSS-TFLDETPSLA-----PNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             C---E-EECCC-SSSCEEEEEC-----TTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             c---c-eEeec-CccccceEEC-----CCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            2   1 11112 2222345677     999999876653   3788888877654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.4e-05  Score=72.83  Aligned_cols=235  Identities=9%  Similarity=-0.018  Sum_probs=132.3

Q ss_pred             eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeeEeecCCCCeeEEEEccCCCE
Q 008058           97 DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADG---MVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKM  173 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~  173 (579)
                      .|.+.|....... .+. .+...+...+|||||+.|+......   .+.+.+...+... .+..+........|+|+|+.
T Consensus        20 ~l~i~d~dG~~~~-~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEe-cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe
Confidence            4777776544433 232 3457788999999999998765433   4677776655543 44456778889999999999


Q ss_pred             EEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCe--EEEEEcCCCccccceeEEeeecC
Q 008058          174 LATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERY--IALWRTDGVKKQSASCVLAMEHP  246 (579)
Q Consensus       174 l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~--i~vwd~~~~~~~~~~~~~~~~~~  246 (579)
                      ++...   +  .+..+........ ....+........+++++..++..+..++.  |...++......      .....
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~------~~~~~  169 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------RITWE  169 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE------ECCCS
T ss_pred             eeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeecccccce------eeecc
Confidence            88765   3  3344443333322 333344555666788888776666545654  445555554322      12223


Q ss_pred             ceeeEeEEecCCcccCCCcEEEEEEcCC---eEEEEECCCceeecccCCceEEeeecccCcccccccchhhhhcccccee
Q 008058          247 AVFMDCRCIDNGGVDDAGLYVLAISETG---VCYIWYGQNIEELRNTKATKILSSSEDVNSKSQKSATAAIFAAKLQDIV  323 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  323 (579)
                      ........++     |+++.++..+.++   .+.+.+...+.............   ..++|+++    .|+..+..+  
T Consensus       170 ~~~~~~~~~s-----pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---p~~SPDG~----~i~f~s~~~--  235 (269)
T d2hqsa1         170 GSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDET---PSLAPNGT----MVIYSSSQG--  235 (269)
T ss_dssp             SSEEEEEEEC-----TTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEE---EEECTTSS----EEEEEEEET--
T ss_pred             cccccccccc-----cccceeEEEeecCCceeeeEeecccccceEeecCccccc---eEECCCCC----EEEEEEcCC--
Confidence            3334445565     8999988887654   44555655544322222211111   12688888    454333322  


Q ss_pred             cCCceEEEEEeCCCCCceeEEEecCCCCcEEEeecC
Q 008058          324 KPASVHTFVAYGLLLKPSFQKILVNSGEDINLNCSQ  359 (579)
Q Consensus       324 ~~~~~~~~~~~g~~~~~~~~~~~~h~~~v~~~~~s~  359 (579)
                        ....+.+..-.  ....+.+....+.+...+|||
T Consensus       236 --~~~~l~~~~~d--g~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         236 --MGSVLNLVSTD--GRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             --TEEEEEEEETT--SCCEEECCCSSSEEEEEEECC
T ss_pred             --CCcEEEEEECC--CCCEEEEeCCCCcEEeEEeCC
Confidence              12233332211  122345555556677778887

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.72  E-value=7e-06  Score=76.96  Aligned_cols=184  Identities=11%  Similarity=0.026  Sum_probs=112.6

Q ss_pred             CCeEEEEEccCCeEEEEecC---CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCC----CeeEEEE
Q 008058           95 GGDVLALAVSAGQLKWRLSD---CHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTK----GISCMAV  167 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~v~~l~~  167 (579)
                      +|.|..||..++........   ...+....+.|.++|+.++++...+.+..+|...+..........+    ..+.+++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            46789999988865432211   1123467899999999888888777899999765432221111111    3578999


Q ss_pred             ccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCC----EEEEEecCCCeEEE
Q 008058          168 SSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGK----YVLSSAVGERYIAL  226 (579)
Q Consensus       168 ~p~g~~l~~~~-----------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----~l~s~s~~d~~i~v  226 (579)
                      .|+|++.++-.                 |.|+.++. .++... +.......+.++|+|++.    +|+.+....+.|..
T Consensus       125 d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~  202 (314)
T d1pjxa_         125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS  202 (314)
T ss_dssp             CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred             CCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEE
Confidence            99999888743                 23444443 233332 222334457899999864    45555456888999


Q ss_pred             EEcCCCcccccee-EEeeec-CceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCce
Q 008058          227 WRTDGVKKQSASC-VLAMEH-PAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIE  285 (579)
Q Consensus       227 wd~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  285 (579)
                      |++.......... ...+.. .......+++.     .+|+..++....+.|.+||.+.++
T Consensus       203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-----~~GnlyVa~~~~g~I~~~dp~~g~  258 (314)
T d1pjxa_         203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-----EDNNLLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-----TTCCEEEEEETTTEEEEECTTCBS
T ss_pred             eeccCccccceeeEEEEccccccccceeeEEe-----cCCcEEEEEcCCCEEEEEeCCCCE
Confidence            9876543221111 111111 12234556676     788887777778899999866543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.65  E-value=3.5e-06  Score=78.67  Aligned_cols=186  Identities=11%  Similarity=0.091  Sum_probs=124.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc--eeeEee-cCCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGS--LLGKFR-ASTKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~-~~~~~v  162 (579)
                      ++++++...++.|..|+.......  + ......+.+++|+++|+++++...++.+..|+.....  ...... ......
T Consensus        39 G~l~vt~~~~~~I~~i~p~g~~~~--~-~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (302)
T d2p4oa1          39 GTIFVTNHEVGEIVSITPDGNQQI--H-ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  115 (302)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEE--E-EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCEEEEeCCCCEEEEEeCCCCEEE--E-EcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcccc
Confidence            788888888999999987654332  2 2355789999999999998888888888888765432  222111 233468


Q ss_pred             eEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeec--------C--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcC
Q 008058          163 SCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSG--------H--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTD  230 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~--------h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~  230 (579)
                      +.+++.++|+++++.+  +.++.+|...+........        +  ......+.+.  +.+++.+....+.|..++..
T Consensus       116 n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         116 NGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBC
T ss_pred             ceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccc
Confidence            8999999999888876  7888888887654322211        1  1234556665  44555555578899988887


Q ss_pred             CCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          231 GVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      ............   .......++++     ++|.+.++...+++|..|+.+..
T Consensus       194 ~~~~~~~~~~~~---~~~~pdgia~d-----~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         194 STDKPGEPEIFV---EQTNIDDFAFD-----VEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TTSCBCCCEEEE---ESCCCSSEEEB-----TTCCEEEECBTTCCEEEECTTCC
T ss_pred             cccccccccccc---CCCCCcceEEC-----CCCCEEEEEcCCCcEEEECCCCC
Confidence            654331111111   12234556776     89998888888999999976543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=1.1e-05  Score=75.92  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=126.1

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCceeeEeecC--C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRAS--T  159 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~--~  159 (579)
                      +++.++-...+.|..|++.++....... .......+++|++||+.+++...    .+.+...+...+.........  .
T Consensus        51 G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1          51 GQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence            6666666678889999988876554432 34567899999999987776543    234555665554443333221  2


Q ss_pred             CCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          160 KGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       160 ~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      ..++.+++.|+|++.++..        +.+..++...+ .+..+...-...+.++|+|+++.|+.+....+.|..|++..
T Consensus       130 ~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3578899999999877753        34555655433 33333333345688999999997766665788999999875


Q ss_pred             Cccccce---eEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeecc
Q 008058          232 VKKQSAS---CVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       232 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  289 (579)
                      .......   ..............++++     ++|+..++....|.|.+||. .++.+..
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD-----~~G~l~Va~~~~g~V~~~~p-~G~~l~~  263 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCID-----SDDNLYVAMYGQGRVLVFNK-RGYPIGQ  263 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEB-----TTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEc-----CCCCEEEEEcCCCEEEEECC-CCcEEEE
Confidence            4321100   111111122234567776     89998888888999999995 5766543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=1.4e-06  Score=79.54  Aligned_cols=190  Identities=8%  Similarity=0.026  Sum_probs=114.6

Q ss_pred             EEEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           11 TSFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        11 ~~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      ++++++|+++++....+.+++++-.++.........                   .....+++.+.         +++++
T Consensus        62 vav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~-------------------~~p~~iavd~~---------g~i~v  113 (260)
T d1rwia_          62 LAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL-------------------NYPEGLAVDTQ---------GAVYV  113 (260)
T ss_dssp             EEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSC-------------------CSEEEEEECTT---------CCEEE
T ss_pred             EEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeee-------------------eeccccccccc---------ceeEe
Confidence            488888887777666666666654444433221110                   01122333221         44444


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecCCCCeeEEEEccC
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSD  170 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~  170 (579)
                      .-..+..+..++.......... ........+++++|+|+.+++...++.|..+|...................|+++++
T Consensus       114 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         114 ADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             EEGGGTEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eccccccccccccccceeeeee-ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeee
Confidence            4444455666665544332221 122345678999999998888888889999997654433322234456789999999


Q ss_pred             CCEEEEEC--CeEEEEECCCCeeeEEe-ecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCC
Q 008058          171 GKMLATAA--GQLKTFNCSDHKKMQKF-SGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDG  231 (579)
Q Consensus       171 g~~l~~~~--g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~  231 (579)
                      |+++++..  +.|..++..... ...+ ...-.....|+++++|..+++-. .++.|+.++...
T Consensus       193 g~l~vsd~~~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~-~~~rI~~i~~~~  254 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADR-GNDRVVKLTSLE  254 (260)
T ss_dssp             CCEEEEETTTTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEG-GGTEEEEECCCG
T ss_pred             eeeeeeecCCCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEEC-CCCEEEEEeCCC
Confidence            99888776  688888765443 2222 22334578999999998766644 567666555443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=1.1e-05  Score=74.24  Aligned_cols=143  Identities=13%  Similarity=0.167  Sum_probs=103.2

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEe-cCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeec--CCCCe
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRL-SDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRA--STKGI  162 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~v  162 (579)
                      +.++++....+.+.+++... +.+..+ ...+......+++.++++.+++....+.|++||. +|+.+.++..  .....
T Consensus       125 G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYP  202 (279)
T ss_dssp             SCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSE
T ss_pred             CcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCC
Confidence            45555555556677777543 333333 2346677899999999988888888899999996 5777777642  33467


Q ss_pred             eEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecC--CCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          163 SCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGH--PGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      ..|+++|+|+++++-.   +.|.+|+ .+|+.+.++...  ......+++.|+|.+++ +. .++.|++|......
T Consensus       203 ~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~-~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         203 IGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL-AS-KDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE-TTTEEEEEECSCCC
T ss_pred             cccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-Ee-CCCeEEEEEeeeec
Confidence            8999999999887754   4799998 468877777433  34578999999997544 44 58999999987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.50  E-value=4.3e-05  Score=70.66  Aligned_cols=193  Identities=13%  Similarity=0.034  Sum_probs=129.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEeecC----CCC
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFRAS----TKG  161 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----~~~  161 (579)
                      +.+..+=-..+.|..||+.+++.....   ....+.++++.++|+++++ +.+ .+..+|..+++........    ...
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHA---LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccc
Confidence            444555456788999999998764222   2357889999999876665 455 4889999988754433211    125


Q ss_pred             eeEEEEccCCCEEEEEC------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          162 ISCMAVSSDGKMLATAA------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       162 v~~l~~~p~g~~l~~~~------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      ++.+.+.|+|++.++..      +.-.+|.+..++....+.+ -...+.+.|+++++.++.+.+..+.|..+++......
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~  183 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL  183 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccc
Confidence            78999999999877653      3556777777765554443 3456789999999987776667888999988643211


Q ss_pred             --c-ceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          236 --S-ASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       236 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                        . ................++++     .+|++.++.-..|.|..||. .++.+...
T Consensus       184 ~~~~~~~~~~~~~~~g~pdG~~vD-----~~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         184 PTGKAEVFIDSTGIKGGMDGSVCD-----AEGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             BSSCCEEEEECTTSSSEEEEEEEC-----TTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             cccceEEEeccCcccccccceEEc-----CCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence              1 11112222334456667776     88887777777889999995 56666544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.3e-05  Score=73.92  Aligned_cols=177  Identities=13%  Similarity=0.045  Sum_probs=105.2

Q ss_pred             EEEEccCCCEEEEEe---------CCCcEEEEECCCCeEEEEecc--ccccccccccccccccccccCccceEEeeeccc
Q 008058           10 LTSFSPALDYFAICS---------GDARIKIWDTLKGQVQTEFAD--IASTETTSLYGNRLEREHLSVDYTCMKWLSVDR   78 (579)
Q Consensus        10 ~~~fs~dg~~las~s---------~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   78 (579)
                      ...|||||++++...         ..+.+.++|+.++........  .........|+|+                    
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--------------------  124 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--------------------  124 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--------------------
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--------------------
Confidence            347999999988764         346788899988875432211  1111122333333                    


Q ss_pred             ccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCE-----------------EEEEEccCCCEEEEEeCC-Cc
Q 008058           79 KKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGV-----------------SAISFATHGSCIYSAGAD-GM  140 (579)
Q Consensus        79 ~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~~~~~~~l~s~~~d-g~  140 (579)
                             +..++... ++.|.+.+..++..+.....+..+.|                 .++.|||||++|+....| ..
T Consensus       125 -------G~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~  196 (465)
T d1xfda1         125 -------GQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR  196 (465)
T ss_dssp             -------TTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             -------CceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence                   55566654 67788888877766544443333322                 477899999998876422 22


Q ss_pred             ---------------------------------EEEEeCCCCceeeEee------cCCCCeeEEEEccCCCEEEEEC---
Q 008058          141 ---------------------------------VCEIDPLTGSLLGKFR------ASTKGISCMAVSSDGKMLATAA---  178 (579)
Q Consensus       141 ---------------------------------v~iwd~~~~~~~~~~~------~~~~~v~~l~~~p~g~~l~~~~---  178 (579)
                                                       +.++|+.++.......      .....+..+.|+|++++++...   
T Consensus       197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~  276 (465)
T d1xfda1         197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA  276 (465)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred             cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence                                             3344443332211110      1112467789999998777654   


Q ss_pred             ---CeEEEEECCCCeeeEEeecCC-CCE----EEEEEecCCCEE
Q 008058          179 ---GQLKTFNCSDHKKMQKFSGHP-GAV----RFMTFSDNGKYV  214 (579)
Q Consensus       179 ---g~i~vwd~~~~~~~~~~~~h~-~~v----~~l~~~~~~~~l  214 (579)
                         ..+.++|..++++...+..+. +.|    ....|+|+|+.+
T Consensus       277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence               378899999997755544322 222    345789999843

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.40  E-value=0.00055  Score=62.89  Aligned_cols=217  Identities=14%  Similarity=0.083  Sum_probs=131.6

Q ss_pred             EEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEE
Q 008058           12 SFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLV   90 (579)
Q Consensus        12 ~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~   90 (579)
                      .|++..+.|.... ..++|.-||..+++.. .+..                   .....++.+...         +. ++
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-------------------~~~~~~i~~~~d---------g~-l~   73 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKT-VHAL-------------------PFMGSALAKISD---------SK-QL   73 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-------------------SSCEEEEEEEET---------TE-EE
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-------------------CCCcEEEEEecC---------CC-EE
Confidence            4666555455444 4677888888877643 2221                   112234444332         33 45


Q ss_pred             EEECCCeEEEEEccCCeEEEEecCCC---CCCEEEEEEccCCCEEEEEeC----CCcEEEEeCCCCceeeEeecCCCCee
Q 008058           91 LGTGGGDVLALAVSAGQLKWRLSDCH---PGGVSAISFATHGSCIYSAGA----DGMVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        91 ~~~~~g~i~iwd~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      +++.+ .+.++|..+++........+   ...++++.+.|+|++.++...    .+.-.+|.+..++....+.. -...+
T Consensus        74 va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~N  151 (295)
T d2ghsa1          74 IASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPN  151 (295)
T ss_dssp             EEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEE
T ss_pred             EEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcc
Confidence            55554 58999999987643222111   235889999999987665432    23445666666765544433 33568


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCC------e--eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDH------K--KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV  232 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~------~--~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~  232 (579)
                      .++|+++++.++.+.   +.|+.|++...      +  ....+.+..+....+++..+|++.++.- ..+.|..||.. +
T Consensus       152 g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~~g~V~~~dp~-G  229 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDTD-G  229 (295)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECTT-C
T ss_pred             eeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeee-CCCceEEecCC-C
Confidence            899999999776664   78999987521      1  1222334455678899999998766654 57889999964 4


Q ss_pred             ccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEE
Q 008058          233 KKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS  271 (579)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~  271 (579)
                      +..     ..+..+....++++|-.    ++.+.|++.+
T Consensus       230 ~~~-----~~i~lP~~~~T~~~FGG----~d~~~LyvTt  259 (295)
T d2ghsa1         230 NHI-----ARYEVPGKQTTCPAFIG----PDASRLLVTS  259 (295)
T ss_dssp             CEE-----EEEECSCSBEEEEEEES----TTSCEEEEEE
T ss_pred             cEe-----eEecCCCCceEEEEEeC----CCCCEEEEEE
Confidence            422     33444545567777752    5666665544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=3.8e-05  Score=70.13  Aligned_cols=228  Identities=11%  Similarity=0.035  Sum_probs=124.0

Q ss_pred             EEccC--CCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEE
Q 008058           12 SFSPA--LDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLL   89 (579)
Q Consensus        12 ~fs~d--g~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l   89 (579)
                      ..|||  |+++|..+ +|.|.+.|+.+++.. .+...........|+++                           ++.|
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPD---------------------------G~~i   55 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPD---------------------------GRKI   55 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTT---------------------------SSEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCC---------------------------CCEE
Confidence            45899  99998876 567888899988764 34444444444555554                           6666


Q ss_pred             EEEEC-C-----CeEEEEEccCCeEEEEecC-----CCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCcee
Q 008058           90 VLGTG-G-----GDVLALAVSAGQLKWRLSD-----CHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLL  152 (579)
Q Consensus        90 ~~~~~-~-----g~i~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~  152 (579)
                      +.... +     +.|.+++..+++.......     ..........|+|+|+.++.....      ..+...+...+...
T Consensus        56 af~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          56 AIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             EEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             EEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence            65442 2     2488888888876532211     112345678999999998876332      23455555444332


Q ss_pred             eEeecCCCCeeEEEEccCCCEEEEEC-C------------eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058          153 GKFRASTKGISCMAVSSDGKMLATAA-G------------QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       153 ~~~~~~~~~v~~l~~~p~g~~l~~~~-g------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      ..   +........+.+.+..++... .            ....+........ ....+........++++.  ++....
T Consensus       136 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~  209 (281)
T d1k32a2         136 PL---NLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR--IYFITD  209 (281)
T ss_dssp             EC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE--EEEEEC
T ss_pred             Ee---cCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc--cceecc
Confidence            21   222333333333333444332 0            1122222222222 223344445566666654  333332


Q ss_pred             CC--CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceee
Q 008058          220 GE--RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEEL  287 (579)
Q Consensus       220 ~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  287 (579)
                      .+  ..|.++|+.+.+..   . .+. ....  ....|+     |||+.|+. ..+|.|+++|+++++..
T Consensus       210 ~~~~~~l~~~d~~g~~~~---~-lt~-~~~~--~~~~~S-----pDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         210 IDGFGQIYSTDLDGKDLR---K-HTS-FTDY--YPRHLN-----TDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSSCEEEEEETTSCSCE---E-CCC-CCSS--CEEEEE-----ESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             cccccceEEEeCCCCceE---E-eec-CCCc--ccccCc-----CCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            23  35777788776533   1 111 1111  123455     89998876 45789999999888654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.07  E-value=0.00065  Score=68.76  Aligned_cols=118  Identities=16%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .+..++.++.|.-+|.++|+.+.+++..........-...      ........|            ...++.++.++.+
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~------~~~~g~~~~------------~~~v~~~t~~g~l  140 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCD------VVNRGVALW------------KGKVYVGAWDGRL  140 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSC------SCCCCCEEE------------TTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccc------cccccceEE------------CCcEEEEecccce
Confidence            5667777899999999999999988632211110000000      000011111            4568889999999


Q ss_pred             EEEEccCCeEEEEecCC-CC-CCEEEEEEcc--CCCEEEEEe------CCCcEEEEeCCCCceeeEe
Q 008058           99 LALAVSAGQLKWRLSDC-HP-GGVSAISFAT--HGSCIYSAG------ADGMVCEIDPLTGSLLGKF  155 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~~~-h~-~~V~~l~~~~--~~~~l~s~~------~dg~v~iwd~~~~~~~~~~  155 (579)
                      .-.|..+|+.+++.... +. ..+. +.-.|  -+..++.++      ..|.|+.+|..+|+.+..+
T Consensus       141 ~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         141 IALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (573)
T ss_dssp             EEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             eeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence            99999999988665321 11 1111 00001  122344432      2456888888888766554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.07  E-value=0.00053  Score=69.30  Aligned_cols=238  Identities=15%  Similarity=0.139  Sum_probs=137.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      ..++.++.||.+.-.|.++|+....+...........-+++            +.+            ...++++..   
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p------------~v~------------~~~vivg~~~~~  171 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP------------FVA------------KDTVLMGCSGAE  171 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEEECBCGG
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecC------------eEe------------CCeEEEeecccc
Confidence            45677888999999999999988766432211110000010            000            445566654   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCC------------------------------------CCCE-EEEEEccCCCEEEE
Q 008058           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS  134 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h------------------------------------~~~V-~~l~~~~~~~~l~s  134 (579)
                         .|.|.-+|+.+|+.+++.....                                    .+.+ ...++.++...++.
T Consensus       172 ~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~  251 (571)
T d2ad6a1         172 LGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYY  251 (571)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeee
Confidence               5779999999999988653210                                    1112 23466677666665


Q ss_pred             EeC----------------CCcEEEEeCCCCceeeEeecCCC---------CeeEEEEccCCC---EEEEEC--CeEEEE
Q 008058          135 AGA----------------DGMVCEIDPLTGSLLGKFRASTK---------GISCMAVSSDGK---MLATAA--GQLKTF  184 (579)
Q Consensus       135 ~~~----------------dg~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~~p~g~---~l~~~~--g~i~vw  184 (579)
                      +..                ...+...|.++|+.+..++....         ......+..+|+   .++.++  |.++++
T Consensus       252 ~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vl  331 (571)
T d2ad6a1         252 GSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTL  331 (571)
T ss_dssp             ECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEE
T ss_pred             ecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEE
Confidence            543                24578889999998887774322         112222333454   234444  899999


Q ss_pred             ECCCCeeeEEeecCC-------------------------------------CC--EEEEEEecCCCEEEEEecCC----
Q 008058          185 NCSDHKKMQKFSGHP-------------------------------------GA--VRFMTFSDNGKYVLSSAVGE----  221 (579)
Q Consensus       185 d~~~~~~~~~~~~h~-------------------------------------~~--v~~l~~~~~~~~l~s~s~~d----  221 (579)
                      |..+|+.+...+...                                     +.  -...+++|+...++.... +    
T Consensus       332 Dr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~-~~~~~  410 (571)
T d2ad6a1         332 NRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLN-HICMD  410 (571)
T ss_dssp             ETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEE-CEEEE
T ss_pred             ecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecc-ccccc
Confidence            999998764321100                                     00  012567777666655431 2    


Q ss_pred             ---------------------------------CeEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEE
Q 008058          222 ---------------------------------RYIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVL  268 (579)
Q Consensus       222 ---------------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  268 (579)
                                                       |.|.-+|+.+++..     ...............      ..+..++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~-----W~~~~~~~~~~g~l~------TagglVf  479 (571)
T d2ad6a1         411 WEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-----WTKWEKFAAWGGTLY------TKGGLVW  479 (571)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-----EEEEESSCCCSBCEE------ETTTEEE
T ss_pred             cccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee-----eEcCCCCCCCcceeE------ecCCEEE
Confidence                                             24555555555532     222222211111111      2456778


Q ss_pred             EEEcCCeEEEEECCCceeecccC
Q 008058          269 AISETGVCYIWYGQNIEELRNTK  291 (579)
Q Consensus       269 s~~~dg~i~iwd~~~~~~~~~~~  291 (579)
                      +++.||.++-||.++|+.+...+
T Consensus       480 ~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         480 YATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEE
T ss_pred             EECCCCeEEEEECCCCcEEEEEE
Confidence            89999999999999999987654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.03  E-value=0.0022  Score=60.11  Aligned_cols=191  Identities=10%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             CcEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc--CCCEEEEEeCCC------------------cEEEE
Q 008058           86 SSLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT--HGSCIYSAGADG------------------MVCEI  144 (579)
Q Consensus        86 ~~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~~~dg------------------~v~iw  144 (579)
                      |+++++.. .++.|.+.|+.+.++...+.-.....+..+...+  +-.|++..+.+.                  .+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            77777777 4566999999999886544334566788887765  445676665532                  36778


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC-C----------------eEEEEEC---------------------
Q 008058          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA-G----------------QLKTFNC---------------------  186 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g----------------~i~vwd~---------------------  186 (579)
                      |..+.+....+... +....++++|+|+++++.+ +                .+.+++.                     
T Consensus       179 D~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         179 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            98888877766543 3567889999999988864 1                2344443                     


Q ss_pred             --CCC---eeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc------ccceeEE-eeecCceeeEeEE
Q 008058          187 --SDH---KKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK------QSASCVL-AMEHPAVFMDCRC  254 (579)
Q Consensus       187 --~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~------~~~~~~~-~~~~~~~~~~~~~  254 (579)
                        +..   ..++.++... ....+.++|||+|+++++.-+.++.|+|++.-..      ....++. ..+..-..+ -..
T Consensus       258 D~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL-ht~  335 (459)
T d1fwxa2         258 DGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL-HTA  335 (459)
T ss_dssp             ECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE-EEE
T ss_pred             cccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc-ccc
Confidence              210   1122222222 2467899999999999998899999999964221      0011111 111112222 234


Q ss_pred             ecCCcccCCCcEEEEEEcCCeEEEEECCCc
Q 008058          255 IDNGGVDDAGLYVLAISETGVCYIWYGQNI  284 (579)
Q Consensus       255 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  284 (579)
                      |+     ..|.-..+---|.+|.-|+++..
T Consensus       336 fd-----~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         336 FD-----GRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             EC-----TTSEEEEEETTTTEEEEEEHHHH
T ss_pred             cC-----CCceEEEEeeccceEEEEecchh
Confidence            54     56654444446999999997543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.03  E-value=0.00077  Score=67.97  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             EEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeE
Q 008058           19 YFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDV   98 (579)
Q Consensus        19 ~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i   98 (579)
                      .+..++.++.|.-.|.++|+.+.++...............      ........|            +..++.++.++.|
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~------~~~~~~~~~------------~~~v~~~~~~g~l  129 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCD------AVNRGVALW------------GDKVYVGTLDGRL  129 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTC------SCCCCCEEE------------BTEEEEECTTSEE
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccc------ccccCccee------------CCeEEEEeCCCEE
Confidence            4566777888988999999999987532211110000000      000011111            4568999999999


Q ss_pred             EEEEccCCeEEEEec
Q 008058           99 LALAVSAGQLKWRLS  113 (579)
Q Consensus        99 ~iwd~~~~~~~~~~~  113 (579)
                      .-.|..+|+.++...
T Consensus       130 ~Alda~tG~~~w~~~  144 (560)
T d1kv9a2         130 IALDAKTGKAIWSQQ  144 (560)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEeccC
Confidence            999999999887663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.98  E-value=0.0018  Score=65.50  Aligned_cols=153  Identities=15%  Similarity=0.179  Sum_probs=94.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEEC---
Q 008058           18 DYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTG---   94 (579)
Q Consensus        18 ~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~---   94 (579)
                      .+++.++.|+.|.-.|.++|+....+...........-+++            +..            +..++++..   
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P------------~v~------------~~~vivg~~~~e  177 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP------------YVV------------KDKVIIGSSGAE  177 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC------------EEE------------TTEEEECCBCGG
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCC------------cEE------------CCeEEEeecccc
Confidence            46888888999999999999998877532211110001111            000            455666654   


Q ss_pred             ---CCeEEEEEccCCeEEEEecCCC------------------------------------CCCE-EEEEEccCCCEEEE
Q 008058           95 ---GGDVLALAVSAGQLKWRLSDCH------------------------------------PGGV-SAISFATHGSCIYS  134 (579)
Q Consensus        95 ---~g~i~iwd~~~~~~~~~~~~~h------------------------------------~~~V-~~l~~~~~~~~l~s  134 (579)
                         .|.|+-+|+.+|+.++++....                                    ...+ ..+.+.+....++.
T Consensus       178 ~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~  257 (596)
T d1w6sa_         178 LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF  257 (596)
T ss_dssp             GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEE
T ss_pred             ccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeec
Confidence               3789999999999998763211                                    0111 24456676667666


Q ss_pred             EeCC----------------CcEEEEeCCCCceeeEeecCCC---------CeeEEEE-ccCCC---EEEEEC--CeEEE
Q 008058          135 AGAD----------------GMVCEIDPLTGSLLGKFRASTK---------GISCMAV-SSDGK---MLATAA--GQLKT  183 (579)
Q Consensus       135 ~~~d----------------g~v~iwd~~~~~~~~~~~~~~~---------~v~~l~~-~p~g~---~l~~~~--g~i~v  183 (579)
                      +..+                ..+...|+.+|+.+..++....         .+..+.. ..+|+   .++.+.  |.+++
T Consensus       258 ~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~v  337 (596)
T d1w6sa_         258 GTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYT  337 (596)
T ss_dssp             ECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceee
Confidence            5432                3477889999998887764221         1112221 23443   455555  89999


Q ss_pred             EECCCCeeeEE
Q 008058          184 FNCSDHKKMQK  194 (579)
Q Consensus       184 wd~~~~~~~~~  194 (579)
                      +|-.+|+.+..
T Consensus       338 lDr~tG~~i~~  348 (596)
T d1w6sa_         338 LDRTDGALVSA  348 (596)
T ss_dssp             EETTTCCEEEE
T ss_pred             ecCCCCceeee
Confidence            99999987643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.82  E-value=0.0044  Score=58.06  Aligned_cols=233  Identities=9%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             EEEEcc---CCCEEEEEe-CCCcEEEEECCCCeEEEEecccccc-ccccccccccccccccCccceEEeeeccccccccc
Q 008058           10 LTSFSP---ALDYFAICS-GDARIKIWDTLKGQVQTEFADIAST-ETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        10 ~~~fs~---dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++|..   ||+|+.... .+++|.+-|+++.++...++-+... ...+....                   .++     
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~-------------------~p~-----  144 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK-------------------WPR-----  144 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC-------------------SSB-----
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeeccc-------------------CCC-----
Confidence            346665   899988877 4789999999999987655432211 00000000                   000     


Q ss_pred             CCcEEEEEECC------------------CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC--------
Q 008058           85 GSSLLVLGTGG------------------GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD--------  138 (579)
Q Consensus        85 ~~~~l~~~~~~------------------g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d--------  138 (579)
                       ..+++.++..                  +.+.++|..+.+..+++.-+  +....+.++++|+++++.+.+        
T Consensus       145 -T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~  221 (459)
T d1fwxa2         145 -SNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLP  221 (459)
T ss_dssp             -CSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             -eEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchh
Confidence             2333333321                  23678899998887777533  356788999999998887643        


Q ss_pred             ------------------------------CcEEEEeCCCC---ceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEE
Q 008058          139 ------------------------------GMVCEIDPLTG---SLLGKFRASTKGISCMAVSSDGKMLATAA---GQLK  182 (579)
Q Consensus       139 ------------------------------g~v~iwd~~~~---~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~  182 (579)
                                                    +.+.+-|.+..   ..++.+... .....+.++|||+++++++   .++.
T Consensus       222 e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVS  300 (459)
T d1fwxa2         222 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVT  300 (459)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred             hcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEE
Confidence                                          12333443321   122222222 2456789999999999998   7999


Q ss_pred             EEECCCCe-----------eeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCC------ccccceeEEeeec
Q 008058          183 TFNCSDHK-----------KMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGV------KKQSASCVLAMEH  245 (579)
Q Consensus       183 vwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~------~~~~~~~~~~~~~  245 (579)
                      |+|++.-.           .+..-....-....-+|...| ...++-.-|..|.-|++...      +.. ...+..+.-
T Consensus       301 ViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~kw~~~~~~~~~~~~~~-~~v~~k~~v  378 (459)
T d1fwxa2         301 VLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKV-DPIKDKLDV  378 (459)
T ss_dssp             EEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSC-CCEEEEEEC
T ss_pred             EEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEEEecchhhhhhccccC-Ccceecccc
Confidence            99996321           111111122234556888887 45555557999999998532      111 112223332


Q ss_pred             CceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          246 PAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      +-..=.....-.....|+|++|++...
T Consensus       379 ~y~~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         379 HYQPGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             SSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             ccCCCCCccCcCCcCCCCCCEEEEecc
Confidence            222222222222223589999998864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.70  E-value=0.0013  Score=59.38  Aligned_cols=196  Identities=13%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             eEEEEccCCCEEEEEeC-C-----CcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeeccccccc
Q 008058            9 ILTSFSPALDYFAICSG-D-----ARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKR   82 (579)
Q Consensus         9 ~~~~fs~dg~~las~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~   82 (579)
                      ...+|||||++||.... +     ..|.+++..+++... +........           ..........|.+.      
T Consensus        44 ~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~-----------~~~~~~~~~~~spd------  105 (281)
T d1k32a2          44 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKST-----------GRRMFTDVAGFDPD------  105 (281)
T ss_dssp             EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEE-----------TTEECSEEEEECTT------
T ss_pred             cCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCcc-----------CccccccccccCCC------
Confidence            44589999999997643 2     247777887777654 221111100           00111223445443      


Q ss_pred             ccCCcEEEEEECCC------eEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCE-EEEEeCCC-----------cEEEE
Q 008058           83 KLGSSLLVLGTGGG------DVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSC-IYSAGADG-----------MVCEI  144 (579)
Q Consensus        83 ~~~~~~l~~~~~~g------~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~~~dg-----------~v~iw  144 (579)
                         ++.++......      .+...+...+.....    +........ .+++.. ++....+.           ....+
T Consensus       106 ---g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (281)
T d1k32a2         106 ---GNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHIL-FADGRRVIGRNTFELPHWKGYRGGTRGKIWI  177 (281)
T ss_dssp             ---CCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEEE-EETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred             ---CCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCccceee-ecCCCeEEEeeccccceeeeeccCCcceeee
Confidence               55555543322      255566665554322    222223333 344443 33322211           11112


Q ss_pred             eCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCC
Q 008058          145 DPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGE  221 (579)
Q Consensus       145 d~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d  221 (579)
                      ........ .............++++........   ..|+++|+.+++. ..+..+.. .....|+|||+.|+...  +
T Consensus       178 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~~-~~~~~~SpDG~~I~f~~--~  252 (281)
T d1k32a2         178 EVNSGAFK-KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-RKHTSFTD-YYPRHLNTDGRRILFSK--G  252 (281)
T ss_dssp             EEETTEEE-EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-EECCCCCS-SCEEEEEESSSCEEEEE--T
T ss_pred             ecccccee-eccCCccccceeeeeccccceecccccccceEEEeCCCCce-EEeecCCC-cccccCcCCCCEEEEEe--C
Confidence            21122222 2222334445556666533332222   5899999877654 33433322 22346899999988764  6


Q ss_pred             CeEEEEEcCCCccc
Q 008058          222 RYIALWRTDGVKKQ  235 (579)
Q Consensus       222 ~~i~vwd~~~~~~~  235 (579)
                      +.|+++|+.+++..
T Consensus       253 ~~l~~~d~~~g~~~  266 (281)
T d1k32a2         253 GSIYIFNPDTEKIE  266 (281)
T ss_dssp             TEEEEECTTTCCEE
T ss_pred             CEEEEEECCCCCEE
Confidence            88999999887643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.015  Score=58.32  Aligned_cols=196  Identities=13%  Similarity=0.142  Sum_probs=112.8

Q ss_pred             EEEEEe-CCCcEEEEEC-CCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCC
Q 008058           19 YFAICS-GDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGG   96 (579)
Q Consensus        19 ~las~s-~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g   96 (579)
                      .+..++ .++.|.-.|. ++|+.+.+++..............       .....++.           .+..++.++.+|
T Consensus        64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~rg~a~-----------~~~~i~~~~~~g  125 (571)
T d2ad6a1          64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCD-------VVDRGLAY-----------GAGQIVKKQANG  125 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTC-------SCCCCCEE-----------ETTEEEEECTTS
T ss_pred             EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccC-------cCCCccee-----------eCCeEEEEeCCC
Confidence            344444 3688888897 479999988632221111111100       00000111           145688999999


Q ss_pred             eEEEEEccCCeEEEEecCC--C-CCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeeEeecCC--------
Q 008058           97 DVLALAVSAGQLKWRLSDC--H-PGGVSAISFATHGSCIYSAG------ADGMVCEIDPLTGSLLGKFRAST--------  159 (579)
Q Consensus        97 ~i~iwd~~~~~~~~~~~~~--h-~~~V~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~--------  159 (579)
                      .+.-.|.++|+..+.....  + ...+++--.-.++ .++.+.      .+|.|+.+|+.+|+.+..+....        
T Consensus       126 ~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~  204 (571)
T d2ad6a1         126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA  204 (571)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             cEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccc
Confidence            9999999999987665321  1 1111111111134 444444      36789999999999988765321        


Q ss_pred             -----------------------------CCe-eEEEEccCCCEEEEEC------------------CeEEEEECCCCee
Q 008058          160 -----------------------------KGI-SCMAVSSDGKMLATAA------------------GQLKTFNCSDHKK  191 (579)
Q Consensus       160 -----------------------------~~v-~~l~~~p~g~~l~~~~------------------g~i~vwd~~~~~~  191 (579)
                                                   ..+ ...+++++..+++.+.                  ..+.-.|.++|+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~  284 (571)
T d2ad6a1         205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA  284 (571)
T ss_dssp             TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred             ccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhh
Confidence                                         111 2346666666665443                  2577889999998


Q ss_pred             eEEeecCCCC---------EEEEEEecCCC---EEEEEecCCCeEEEEEcCCCcc
Q 008058          192 MQKFSGHPGA---------VRFMTFSDNGK---YVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       192 ~~~~~~h~~~---------v~~l~~~~~~~---~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      +..++.+...         .....+..+++   .++..+ .+|.+.+.|..+++.
T Consensus       285 ~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~-k~G~l~vlDr~tG~~  338 (571)
T d2ad6a1         285 KWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNL  338 (571)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCE
T ss_pred             eecccccCccccccccccccceeeeeccCccccceeecc-ccceEEEEecCCCcE
Confidence            8777643222         22222333443   334444 789999999888864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.039  Score=48.77  Aligned_cols=194  Identities=11%  Similarity=0.102  Sum_probs=121.4

Q ss_pred             CcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeeEeecCC----C
Q 008058           86 SSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTG-SLLGKFRAST----K  160 (579)
Q Consensus        86 ~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~----~  160 (579)
                      ...|++-+ ...+.++|+++.+.+....  ...+|.--.|-.+. .|+-. .+..|+-|++... .+.+.|.-|.    .
T Consensus        74 ~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~~-~L~lV-T~taVYHW~~~g~s~P~k~fdR~~~L~~~  148 (327)
T d1utca2          74 SKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGC  148 (327)
T ss_dssp             SSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSSS-EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTC
T ss_pred             CcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCCC-EEEEE-cCCceEEEcccCCCCchhhhhhcccccCc
Confidence            45566655 5679999999999886663  34567777776544 44444 3567999999532 4666666554    3


Q ss_pred             CeeEEEEccCCCEEEEEC---------CeEEEEECCCCeeeEEeecCCCCEEEEEEecC--CCEEEE-E--ecCCCeEEE
Q 008058          161 GISCMAVSSDGKMLATAA---------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDN--GKYVLS-S--AVGERYIAL  226 (579)
Q Consensus       161 ~v~~l~~~p~g~~l~~~~---------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s-~--s~~d~~i~v  226 (579)
                      .|-.-..++++++++..+         |.+.+|..+.+ .-+.+.||.+.-..+.+..+  ...+++ +  +...+.+.+
T Consensus       149 QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhI  227 (327)
T d1utca2         149 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  227 (327)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEE
Confidence            677888899999988754         78999998765 34456777654444433211  111222 1  122357889


Q ss_pred             EEcCCCcc--cc-ceeEEee----ecCceeeEeEEecCCcccCCCcEEEEEEcCCeEEEEECCCceeeccc
Q 008058          227 WRTDGVKK--QS-ASCVLAM----EHPAVFMDCRCIDNGGVDDAGLYVLAISETGVCYIWYGQNIEELRNT  290 (579)
Q Consensus       227 wd~~~~~~--~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  290 (579)
                      -++.....  .. .+....+    +......-.+..+     +.-..+...+.-|.+++||++++..+...
T Consensus       228 iEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs-----~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         228 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS-----EKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE-----TTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee-----ccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence            88876321  10 0111111    1223333444444     56678888999999999999999887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=0.05  Score=54.56  Aligned_cols=219  Identities=10%  Similarity=0.084  Sum_probs=123.0

Q ss_pred             CCCcccceEEEEcc---------------CCCEEEEEeCCCcEEEEEC-CCCeEEEEecccccccccccccccccccccc
Q 008058            2 GSSNIRDILTSFSP---------------ALDYFAICSGDARIKIWDT-LKGQVQTEFADIASTETTSLYGNRLEREHLS   65 (579)
Q Consensus         2 ~~~~V~~~~~~fs~---------------dg~~las~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (579)
                      +.+.|..|.++|+-               +|..+++++.++.+...|. ++|+.+.++...........-       ...
T Consensus        33 ~~~Nv~~L~~aW~~~~~~~~~~~~tPiv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~-------~~~  105 (596)
T d1w6sa_          33 NKGNVKQLRPAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA-------CCD  105 (596)
T ss_dssp             CTTTGGGEEEEEEEECSCCSCCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC-------SSC
T ss_pred             CHhHhhhceEEEEEECCCCCCceeCCEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccccc-------ccc
Confidence            34556666666641               3333344455677888886 589999888632211110000       000


Q ss_pred             CccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCC---CCEEE-EEEccCCCEEEEEeC----
Q 008058           66 VDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHP---GGVSA-ISFATHGSCIYSAGA----  137 (579)
Q Consensus        66 ~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~---~~V~~-l~~~~~~~~l~s~~~----  137 (579)
                      ....-+...+.+..     ....++.++.++.|.-.|..+|+.++.+..+..   ..+++ -.+  -+..++.+..    
T Consensus       106 ~~~RGv~~~~~~~~-----~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~  178 (596)
T d1w6sa_         106 LVNRGLAYWPGDGK-----TPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAEL  178 (596)
T ss_dssp             SCCCCCEEECCCSS-----SCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGG
T ss_pred             cccceeEEecCCCC-----CceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccc
Confidence            01111222221111     155789999999999999999999887642211   11111 011  1334555543    


Q ss_pred             --CCcEEEEeCCCCceeeEeecCC-------------------------------------C-CeeEEEEccCCCEEEEE
Q 008058          138 --DGMVCEIDPLTGSLLGKFRAST-------------------------------------K-GISCMAVSSDGKMLATA  177 (579)
Q Consensus       138 --dg~v~iwd~~~~~~~~~~~~~~-------------------------------------~-~v~~l~~~p~g~~l~~~  177 (579)
                        .|.|+-+|..+|+.+.++....                                     . .-..+++.+...++..+
T Consensus       179 ~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~  258 (596)
T d1w6sa_         179 GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFG  258 (596)
T ss_dssp             TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE
T ss_pred             cccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecc
Confidence              4899999999999988765211                                     0 11244666766666655


Q ss_pred             C------------------CeEEEEECCCCeeeEEeec--CC-------CCEEEEEE-ecCCC---EEEEEecCCCeEEE
Q 008058          178 A------------------GQLKTFNCSDHKKMQKFSG--HP-------GAVRFMTF-SDNGK---YVLSSAVGERYIAL  226 (579)
Q Consensus       178 ~------------------g~i~vwd~~~~~~~~~~~~--h~-------~~v~~l~~-~~~~~---~l~s~s~~d~~i~v  226 (579)
                      .                  ..|.-.|.++|+.+-.++.  |.       ....-+.. ..+|+   .++... .+|.+.+
T Consensus       259 tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~-k~G~~~v  337 (596)
T d1w6sa_         259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYT  337 (596)
T ss_dssp             CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc-cccceee
Confidence            3                  2477889999998877753  21       11111221 23443   444444 7899999


Q ss_pred             EEcCCCccc
Q 008058          227 WRTDGVKKQ  235 (579)
Q Consensus       227 wd~~~~~~~  235 (579)
                      +|-.+++..
T Consensus       338 lDr~tG~~i  346 (596)
T d1w6sa_         338 LDRTDGALV  346 (596)
T ss_dssp             EETTTCCEE
T ss_pred             ecCCCCcee
Confidence            999888744

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.034  Score=55.76  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             CCCcEEEEEEcCCeEEEEECCCceeecccCC
Q 008058          262 DAGLYVLAISETGVCYIWYGQNIEELRNTKA  292 (579)
Q Consensus       262 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  292 (579)
                      ..|..|++|+.||.++-||.+||+.+...+-
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            3567888899999999999999999976543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.087  Score=46.52  Aligned_cols=195  Identities=9%  Similarity=-0.074  Sum_probs=113.3

Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCc
Q 008058            9 ILTSFSPALDYFAICS-GDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSS   87 (579)
Q Consensus         9 ~~~~fs~dg~~las~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   87 (579)
                      +.++|++..+.+.... .++.|+..++..+.....+.....                  ....++....         +.
T Consensus        39 ~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~------------------~p~~iAvD~~---------~~   91 (263)
T d1npea_          39 IGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG------------------SPEGIALDHL---------GR   91 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC------------------CEEEEEEETT---------TT
T ss_pred             EEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc------------------cccEEEEecc---------CC
Confidence            3458888777776654 356777777765543332321101                  1112222221         23


Q ss_pred             EEE-EEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC-C--cEEEEeCCCCceeeEeecCCCCee
Q 008058           88 LLV-LGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD-G--MVCEIDPLTGSLLGKFRASTKGIS  163 (579)
Q Consensus        88 ~l~-~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~v~  163 (579)
                      .|+ +-...+.|.+.++...... .+.......+.+++++|.+.+++..... +  .|..-++............-....
T Consensus        92 ~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~  170 (263)
T d1npea_          92 TIFWTDSQLDRIEVAKMDGTQRR-VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN  170 (263)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred             eEEEeccCCCEEEEEecCCceEE-EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence            344 4445567888888765443 2223334678999999987777655332 2  355456643332222332334678


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcc
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKK  234 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~  234 (579)
                      .+++++.++.|..++   +.|...|+........+.+... ..+|++.  +.+|..+....+.|...|..+++.
T Consensus       171 glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKE  241 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEE
T ss_pred             eEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCcc
Confidence            999998887776654   7899999876554444444333 4578776  345555544678888888887753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.096  Score=46.21  Aligned_cols=189  Identities=9%  Similarity=-0.023  Sum_probs=113.9

Q ss_pred             cEEEEEE-CCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeE
Q 008058           87 SLLVLGT-GGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISC  164 (579)
Q Consensus        87 ~~l~~~~-~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~  164 (579)
                      +.++.+. ..+.|+..++..+.....+ ......+.++++..-++.|+.+. ..+.|.+.++........+......+..
T Consensus        48 ~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~  126 (263)
T d1npea_          48 KVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRG  126 (263)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcE
Confidence            3444443 4566888887765443222 33345789999987676766554 5678999998654433333333457899


Q ss_pred             EEEccCCCEEEEEC---C--eEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCcccccee
Q 008058          165 MAVSSDGKMLATAA---G--QLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASC  239 (579)
Q Consensus       165 l~~~p~g~~l~~~~---g--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~  239 (579)
                      ++++|...++....   +  .|.--++............-.....+++.+.++.|..+....+.|...++......   .
T Consensus       127 l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~---~  203 (263)
T d1npea_         127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR---K  203 (263)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE---E
T ss_pred             EEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE---E
Confidence            99999776666543   2  35545665433332233334567899999888877766556788999998765422   2


Q ss_pred             EEeeecCceeeEeEEecCCcccCCCcEEEEEE-cCCeEEEEECCCceeecc
Q 008058          240 VLAMEHPAVFMDCRCIDNGGVDDAGLYVLAIS-ETGVCYIWYGQNIEELRN  289 (579)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  289 (579)
                      +..  ....... +++       ++.+|.... ..+.|...|..+++.+..
T Consensus       204 v~~--~~~~P~~-lav-------~~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         204 VLE--GLQYPFA-VTS-------YGKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EEE--CCCSEEE-EEE-------ETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEC--CCCCcEE-EEE-------ECCEEEEEECCCCEEEEEECCCCccceE
Confidence            222  1122223 222       124454444 567888888887766543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.14  Score=45.21  Aligned_cols=159  Identities=11%  Similarity=-0.043  Sum_probs=99.4

Q ss_pred             CCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC----CeEEEEECCCCee
Q 008058          117 PGGVSAISFATHGSCIYSAG-ADGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA----GQLKTFNCSDHKK  191 (579)
Q Consensus       117 ~~~V~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~----g~i~vwd~~~~~~  191 (579)
                      ...+.++++.+.++.|+.+. ..+.|.+.++........+.........++++|...++....    +.|.-.++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            35577899987677666654 567899999876554444555556789999998655555433    4677777755433


Q ss_pred             eEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEeeecC-ceeeEeEEecCCcccCCCcEEEEE
Q 008058          192 MQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAMEHP-AVFMDCRCIDNGGVDDAGLYVLAI  270 (579)
Q Consensus       192 ~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~  270 (579)
                      .......-...+.+++.+.+..|..+....+.|...++......   .+...... ........+        +.+|...
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~---~~~~~~~~~~~p~~lav~--------~~~ly~t  224 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK---TILEDEKRLAHPFSLAVF--------EDKVFWT  224 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECTTTTSSEEEEEEE--------TTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE---EEEeCCCcccccEEEEEE--------CCEEEEE
Confidence            33333344567899999988877777656789999998765422   22222221 223333322        2444444


Q ss_pred             -EcCCeEEEEECCCcee
Q 008058          271 -SETGVCYIWYGQNIEE  286 (579)
Q Consensus       271 -~~dg~i~iwd~~~~~~  286 (579)
                       ..++.|+..+..++..
T Consensus       225 d~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         225 DIINEAIFSANRLTGSD  241 (266)
T ss_dssp             ETTTTEEEEEETTTCCC
T ss_pred             ECCCCeEEEEECCCCcc
Confidence             4567888887766643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.54  E-value=0.071  Score=49.93  Aligned_cols=106  Identities=8%  Similarity=0.006  Sum_probs=61.5

Q ss_pred             CcEEEEEECC-CeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC------CcEEEEeCCCCceeeE--ee
Q 008058           86 SSLLVLGTGG-GDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD------GMVCEIDPLTGSLLGK--FR  156 (579)
Q Consensus        86 ~~~l~~~~~~-g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~--~~  156 (579)
                      +.+++.|..+ ..+.+||+.++.....-.......-.+.+..+||+.++.++.+      ..+.+||+.+.+-...  ..
T Consensus        87 g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~  166 (387)
T d1k3ia3          87 GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK  166 (387)
T ss_dssp             SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSC
T ss_pred             CcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCc
Confidence            6667776555 4699999999876432211111222456677899998888643      3689999887642211  00


Q ss_pred             ------c-C-----CCCeeEEEEccCCCEEEEEC--CeEEEEECCCCee
Q 008058          157 ------A-S-----TKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKK  191 (579)
Q Consensus       157 ------~-~-----~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~  191 (579)
                            . +     ...-..+...++|+.+..+.  +.+.+++..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             SGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             ccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence                  0 0     00111223345677777766  5677777766543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.26  Score=43.34  Aligned_cols=191  Identities=13%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             EEccCCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEE
Q 008058           12 SFSPALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVL   91 (579)
Q Consensus        12 ~fs~dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~   91 (579)
                      --+|..+.||.=+ ..++.|+|+++.+.+..+.-..                   .+.--.|.+          .+.|+.
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-------------------~VvfWkWis----------~~~L~l  118 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-------------------DVTFWKWIS----------LNTVAL  118 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------------CCCEEEESS----------SSEEEE
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-------------------CcEEEEecC----------CCEEEE
Confidence            4578888888766 4589999999998887765322                   222233443          334444


Q ss_pred             EECCCeEEEEEccCCeEEEEecCCC----CCCEEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCceeeEeecCCC
Q 008058           92 GTGGGDVLALAVSAGQLKWRLSDCH----PGGVSAISFATHGSCIYSAG-------ADGMVCEIDPLTGSLLGKFRASTK  160 (579)
Q Consensus        92 ~~~~g~i~iwd~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~  160 (579)
                      .+ +..|+-|++.......+....|    ...|..-..+++.++++..+       -.|.+.+|..+. +.-+.+.+|.+
T Consensus       119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa  196 (327)
T d1utca2         119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA  196 (327)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEE
T ss_pred             Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceee
Confidence            43 4579999996543222332333    35688888899999866543       236788899754 44556777765


Q ss_pred             CeeEEEEccCC---CEEEEEC-----CeEEEEECCCCe---e-----eEEe--e--cCCCCEEEEEEecCCCEEEEEecC
Q 008058          161 GISCMAVSSDG---KMLATAA-----GQLKTFNCSDHK---K-----MQKF--S--GHPGAVRFMTFSDNGKYVLSSAVG  220 (579)
Q Consensus       161 ~v~~l~~~p~g---~~l~~~~-----g~i~vwd~~~~~---~-----~~~~--~--~h~~~v~~l~~~~~~~~l~s~s~~  220 (579)
                      ....+.+..+.   ++++.+.     +.+++.++....   .     ...+  +  ...+-.-++..++.-..+..-+ .
T Consensus       197 ~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviT-K  275 (327)
T d1utca2         197 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT-K  275 (327)
T ss_dssp             EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEE-T
T ss_pred             eeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEe-c
Confidence            54444443211   2444433     588888886521   1     1111  1  1123455778887766666666 6


Q ss_pred             CCeEEEEEcCCCccc
Q 008058          221 ERYIALWRTDGVKKQ  235 (579)
Q Consensus       221 d~~i~vwd~~~~~~~  235 (579)
                      -|.+.+||+.++...
T Consensus       276 ~G~i~lyDleTgt~i  290 (327)
T d1utca2         276 YGYIHLYDLETGTCI  290 (327)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CcEEEEEEcccccEE
Confidence            899999999999744

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.04  E-value=0.53  Score=42.93  Aligned_cols=192  Identities=14%  Similarity=0.188  Sum_probs=109.2

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECC
Q 008058           16 ALDYFAICSGDARIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGG   95 (579)
Q Consensus        16 dg~~las~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~   95 (579)
                      +..+++....++=|.+||+. |+.+..+...  .++++-....               .+.+.+      ...+++++..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~G--r~NNVDvr~~---------------~~l~~~------~~di~vasnR   94 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHTG--KLNNVDIRYD---------------FPLNGK------KVDIAAASNR   94 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECCSS--CEEEEEEEEE---------------EEETTE------EEEEEEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecccC--CcCccccccc---------------cccCCc------ceEEEEEeCC
Confidence            44566666666669999985 7777665421  1111100000               000100      2235555532


Q ss_pred             ----CeEEEEEccCC-eEEEEecCC------CCCCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCC---CC----ceee
Q 008058           96 ----GDVLALAVSAG-QLKWRLSDC------HPGGVSAISF--ATH-GS-CIYSAGADGMVCEIDPL---TG----SLLG  153 (579)
Q Consensus        96 ----g~i~iwd~~~~-~~~~~~~~~------h~~~V~~l~~--~~~-~~-~l~s~~~dg~v~iwd~~---~~----~~~~  153 (579)
                          ..|.+|.+... ..+..+...      -...+.++|+  ++. |. +++....+|.+..|.+.   .+    +.++
T Consensus        95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr  174 (353)
T d1h6la_          95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR  174 (353)
T ss_dssp             CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE
T ss_pred             cCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeee
Confidence                35778877532 222222111      1124677777  664 44 46667788999888663   23    3455


Q ss_pred             EeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCC-----CeeeEEeec--CCCCEEEEEEec--CCC-EEEEEecCC
Q 008058          154 KFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSD-----HKKMQKFSG--HPGAVRFMTFSD--NGK-YVLSSAVGE  221 (579)
Q Consensus       154 ~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~-----~~~~~~~~~--h~~~v~~l~~~~--~~~-~l~s~s~~d  221 (579)
                      +|.. ...+..|.+.+....|..+-  .-|+.++..-     +..+....+  ....+-.|+.-.  ++. ||++++.++
T Consensus       175 ~f~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         175 AFKM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             EEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ccCC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            5653 45788999999888888887  3455555431     223333222  356788887653  333 777777788


Q ss_pred             CeEEEEEcCCC
Q 008058          222 RYIALWRTDGV  232 (579)
Q Consensus       222 ~~i~vwd~~~~  232 (579)
                      ++..+||....
T Consensus       254 n~f~vydr~~~  264 (353)
T d1h6la_         254 SSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEESSTT
T ss_pred             CeEEEEecCCC
Confidence            99999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.03  E-value=0.23  Score=49.28  Aligned_cols=146  Identities=11%  Similarity=0.078  Sum_probs=82.2

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCC----------------------------------EEEEEEccCCCEE
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGG----------------------------------VSAISFATHGSCI  132 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~----------------------------------V~~l~~~~~~~~l  132 (579)
                      ..++.++.+|.+.++|..+|+.+..........                                  -...+++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            467888899999999999999875442111000                                  0124567777777


Q ss_pred             EEEeCCCcEEEEeCCCCceeeEeecCC--C-CeeEEEEccCCCEEEEEC-CeEEEEECCCCeeeEEeecCCCCEEEEEEe
Q 008058          133 YSAGADGMVCEIDPLTGSLLGKFRAST--K-GISCMAVSSDGKMLATAA-GQLKTFNCSDHKKMQKFSGHPGAVRFMTFS  208 (579)
Q Consensus       133 ~s~~~dg~v~iwd~~~~~~~~~~~~~~--~-~v~~l~~~p~g~~l~~~~-g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~  208 (579)
                      +....+....++.....+.........  + ......+ +.+.-..... |.+.-||+.+++.+-+.+... +..+=..+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~ls  485 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLT  485 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEE
T ss_pred             EeeccccceeeecccccccccCCCCccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEE
Confidence            766666555555543322111111100  0 0000011 0111000111 689999999999987775332 22221233


Q ss_pred             cCCCEEEEEecCCCeEEEEEcCCCccc
Q 008058          209 DNGKYVLSSAVGERYIALWRTDGVKKQ  235 (579)
Q Consensus       209 ~~~~~l~s~s~~d~~i~vwd~~~~~~~  235 (579)
                      -.+..+++++ .|+.++.+|.++++..
T Consensus       486 tagglVF~G~-~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         486 TAGNVVFQGT-ADGRLVAYHAATGEKL  511 (573)
T ss_dssp             ETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             EcCCEEEEEC-CCCeEEEEECCCCcEe
Confidence            4566777765 7999999999999854

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.01  E-value=0.5  Score=46.58  Aligned_cols=175  Identities=18%  Similarity=0.203  Sum_probs=101.3

Q ss_pred             cEEEEECCCCeEEEEeccccccccccccccccccccccCccceEEeeecccccccccCCcEEEEEECCCeEEEEEccCCe
Q 008058           28 RIKIWDTLKGQVQTEFADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKLGSSLLVLGTGGGDVLALAVSAGQ  107 (579)
Q Consensus        28 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~  107 (579)
                      .|.-.|.++|+....++..............          ..+.-...+.+     ....++.++.+|.+.++|..+|+
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~----------~~l~~~~~~g~-----~~~~v~~~~k~G~~~~lDr~tG~  335 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQ----------ITLAELNIDGK-----PRKVLMQAPKNGFFYVLDRTNGK  335 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSC----------EEEEEEEETTE-----EEEEEEECCTTSEEEEEETTTCC
T ss_pred             eeEEecCCccceeEEEeccccccccccccce----------eeeeeeecCCc-----eeeeeeecCccceEEEEecCCCc
Confidence            4666688899988877654332221111100          01111111111     03467788899999999999999


Q ss_pred             EEEEecCCCCCCE-----------------------------------EEEEEccCCCEEEEEeC---------------
Q 008058          108 LKWRLSDCHPGGV-----------------------------------SAISFATHGSCIYSAGA---------------  137 (579)
Q Consensus       108 ~~~~~~~~h~~~V-----------------------------------~~l~~~~~~~~l~s~~~---------------  137 (579)
                      .+...........                                   ...+++|+...++....               
T Consensus       336 ~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~  415 (560)
T d1kv9a2         336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (560)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             ccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccc
Confidence            8755422211000                                   14466777766665432               


Q ss_pred             ---------------------CCcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEE
Q 008058          138 ---------------------DGMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQK  194 (579)
Q Consensus       138 ---------------------dg~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~  194 (579)
                                           .|.+.-||+.+|+.+..+.... +..+-.+.-.|.+++.|+  |.++.+|.++|+.+-+
T Consensus       416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                                 2568889999998887765322 222212233456777776  8999999999999988


Q ss_pred             eecCCCC-EEEEEEecCCC-EEEEEe
Q 008058          195 FSGHPGA-VRFMTFSDNGK-YVLSSA  218 (579)
Q Consensus       195 ~~~h~~~-v~~l~~~~~~~-~l~s~s  218 (579)
                      +.-.... -.-+.|..+|+ |+++.+
T Consensus       495 ~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         495 FEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EECCCCccccCEEEEECCEEEEEEEe
Confidence            8632211 11245666786 555443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.00  E-value=0.67  Score=43.82  Aligned_cols=235  Identities=11%  Similarity=0.074  Sum_probs=120.5

Q ss_pred             EEEccCCCEEEEEe-CC----CcEEEEECCCCeEEEE-eccccccccccccccccccccccCccceEEeeeccccccccc
Q 008058           11 TSFSPALDYFAICS-GD----ARIKIWDTLKGQVQTE-FADIASTETTSLYGNRLEREHLSVDYTCMKWLSVDRKKKRKL   84 (579)
Q Consensus        11 ~~fs~dg~~las~s-~d----g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   84 (579)
                      .++||||+++|.+- ..    .+|+++|+.+|+.+.. +.                    ......+.|.+.        
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--------------------~~~~~~~~W~~D--------  181 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--------------------RVKFSCMAWTHD--------  181 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--------------------EECSCCEEECTT--------
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--------------------cccccceEEcCC--------
Confidence            47899999998542 22    4799999999986542 11                    111234566554        


Q ss_pred             CCcEEEEEECC----------------CeEEEEEccCCeEEE-EecCC--CCCCEEEEEEccCCCEEEEEeC---CCc--
Q 008058           85 GSSLLVLGTGG----------------GDVLALAVSAGQLKW-RLSDC--HPGGVSAISFATHGSCIYSAGA---DGM--  140 (579)
Q Consensus        85 ~~~~l~~~~~~----------------g~i~iwd~~~~~~~~-~~~~~--h~~~V~~l~~~~~~~~l~s~~~---dg~--  140 (579)
                       +..|+....+                ..|..|.+.++.... .+...  ....+..+..++++++++....   ++.  
T Consensus       182 -~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~  260 (430)
T d1qfma1         182 -GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR  260 (430)
T ss_dssp             -SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred             -CCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEE
Confidence             3334433321                247778776653211 11122  2335777888999999764332   333  


Q ss_pred             EEEEeCCCCc--------eeeEeecCCCCeeEEEEccCCCEEEEEC-----CeEEEEECCCCee--eEEe-ecCCCCEEE
Q 008058          141 VCEIDPLTGS--------LLGKFRASTKGISCMAVSSDGKMLATAA-----GQLKTFNCSDHKK--MQKF-SGHPGAVRF  204 (579)
Q Consensus       141 v~iwd~~~~~--------~~~~~~~~~~~v~~l~~~p~g~~l~~~~-----g~i~vwd~~~~~~--~~~~-~~h~~~v~~  204 (579)
                      +...|+....        ....+........-+ .+.++.+++...     +.|...++.....  ...+ ..+...+..
T Consensus       261 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~  339 (430)
T d1qfma1         261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE  339 (430)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEE
T ss_pred             EEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceee
Confidence            3444543221        111222222233322 233344444443     5777777765422  2333 445555655


Q ss_pred             EEEecCCCEEEEEecCCC--eEEEEEcCCCccccceeEEeeecCceeeEeEEecCCcccCCCcEEEEE-E-c--CCeEEE
Q 008058          205 MTFSDNGKYVLSSAVGER--YIALWRTDGVKKQSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAI-S-E--TGVCYI  278 (579)
Q Consensus       205 l~~~~~~~~l~s~s~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~-~--dg~i~i  278 (579)
                      -.+...+.+|+..-..++  .|.++++.++...   .+.  ..+...+......     ++...+... + .  =.+++-
T Consensus       340 ~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~---~~~--~~~~~sv~~~~~~-----~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         340 WVACVRSNFLVLCYLHDVKNTLQLHDLATGALL---KIF--PLEVGSVVGYSGQ-----KKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEETTTCCEE---EEE--CCCSSEEEEEECC-----TTCSEEEEEEECSSCCCEEEE
T ss_pred             eEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE---Eec--CCCCceEeeccCC-----CCCCEEEEEEcCCCCCCeEEE
Confidence            455555567766544454  5888998876533   121  1222222333222     333333322 2 1  368888


Q ss_pred             EECCCce
Q 008058          279 WYGQNIE  285 (579)
Q Consensus       279 wd~~~~~  285 (579)
                      ||+.+++
T Consensus       410 ~Dl~t~~  416 (430)
T d1qfma1         410 CDLTKEE  416 (430)
T ss_dssp             EETTSSS
T ss_pred             EECCCCC
Confidence            9988875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.51  Score=41.34  Aligned_cols=143  Identities=7%  Similarity=-0.074  Sum_probs=90.1

Q ss_pred             cEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeeEe-ecCCCCee
Q 008058           87 SLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAG--ADGMVCEIDPLTGSLLGKF-RASTKGIS  163 (579)
Q Consensus        87 ~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~-~~~~~~v~  163 (579)
                      .+..+-...+.|.+.++......... ........+++++|...+++...  ..+.|...++. |.....+ ...-...+
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d-Gs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPN  167 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC-CCceecccccccceee
Confidence            33344445567999998876544333 34456789999999766666553  34567777765 4333333 33335678


Q ss_pred             EEEEccCCCEEEEEC---CeEEEEECCCCeeeEEeec--CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          164 CMAVSSDGKMLATAA---GQLKTFNCSDHKKMQKFSG--HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       164 ~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .+++++.++.|..+.   +.|...++...........  ......++++.  +.+|..+...++.|...+..++.
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCc
Confidence            999999888777765   7899999865443322222  22345677776  34555554467888888877665

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.58  E-value=0.15  Score=47.47  Aligned_cols=146  Identities=14%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             CcEEEEEECC-----C------eEEEEEccCCeEEE--EecCCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCCce
Q 008058           86 SSLLVLGTGG-----G------DVLALAVSAGQLKW--RLSDCHPGGVSAISFATHGSCIYSAGAD-GMVCEIDPLTGSL  151 (579)
Q Consensus        86 ~~~l~~~~~~-----g------~i~iwd~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~l~s~~~d-g~v~iwd~~~~~~  151 (579)
                      +++++.|+.+     +      .+.+||+.++....  .....|.....+..+.++|+.++.|+.+ ..+.+||..+..-
T Consensus        31 gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW  110 (387)
T ss_dssp             TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE
T ss_pred             CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc
Confidence            6677777742     1      27799999886431  1222343344566788999998888655 5899999887654


Q ss_pred             eeEeec-CCCCeeEEEEccCCCEEEEEC--------CeEEEEECCCCeeeEEeec----------CCC-----CEEEEEE
Q 008058          152 LGKFRA-STKGISCMAVSSDGKMLATAA--------GQLKTFNCSDHKKMQKFSG----------HPG-----AVRFMTF  207 (579)
Q Consensus       152 ~~~~~~-~~~~v~~l~~~p~g~~l~~~~--------g~i~vwd~~~~~~~~~~~~----------h~~-----~v~~l~~  207 (579)
                      ...-.. ....-.+.+..+||++++.|+        +.+.+||..+.+-.. +..          +..     .-..+..
T Consensus       111 ~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (387)
T d1k3ia3         111 IPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFG  189 (387)
T ss_dssp             EECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEE
T ss_pred             cccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccceeeccceeEEEE
Confidence            322111 112335677788999999886        368999998875321 110          000     0111223


Q ss_pred             ecCCCEEEEEecCCCeEEEEEcCCCc
Q 008058          208 SDNGKYVLSSAVGERYIALWRTDGVK  233 (579)
Q Consensus       208 ~~~~~~l~s~s~~d~~i~vwd~~~~~  233 (579)
                      .++|+.++.++ .++.+.+++.....
T Consensus       190 ~~~G~~~~~g~-~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         190 WKKGSVFQAGP-STAMNWYYTSGSGD  214 (387)
T ss_dssp             CGGGCEEECCS-SSEEEEEECSTTCE
T ss_pred             eCCCCEEEecC-cCCcEEecCcccCc
Confidence            35666666554 45666666665543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.31  E-value=1  Score=40.98  Aligned_cols=199  Identities=13%  Similarity=0.159  Sum_probs=105.3

Q ss_pred             eEEeeec-ccccccccCCcEEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEcc----CC--CEEEEEe-C-C--
Q 008058           70 CMKWLSV-DRKKKRKLGSSLLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFAT----HG--SCIYSAG-A-D--  138 (579)
Q Consensus        70 ~~~w~~~-~~~~~~~~~~~~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~----~~--~~l~s~~-~-d--  138 (579)
                      ...|..+ +|.      ..+++.....+-|++||+. |+.+..+.   .+.++.+..-.    ++  .-++.++ . +  
T Consensus        29 PAIW~n~~~p~------~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~   98 (353)
T d1h6la_          29 PAIWLDPKNPQ------NSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK   98 (353)
T ss_dssp             EEEECCSSCGG------GCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTT
T ss_pred             ceEEcCCCCcC------ccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcc
Confidence            4456544 443      4556666666669999985 66665542   35566555432    22  2244554 2 2  


Q ss_pred             CcEEEEeCC-CCceeeEeecC-------CCCeeEEEE--ccC-CCEEE-EEC--CeEEEEECC---CC----eeeEEeec
Q 008058          139 GMVCEIDPL-TGSLLGKFRAS-------TKGISCMAV--SSD-GKMLA-TAA--GQLKTFNCS---DH----KKMQKFSG  197 (579)
Q Consensus       139 g~v~iwd~~-~~~~~~~~~~~-------~~~v~~l~~--~p~-g~~l~-~~~--g~i~vwd~~---~~----~~~~~~~~  197 (579)
                      .+|.+|.+. ....+..+...       ...++.+|+  +|. |.+.+ +..  |.+..|.+.   .+    +.+++|. 
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-  177 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-  177 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-
Confidence            257777664 22233333221       124667776  654 54433 333  788777653   33    3456665 


Q ss_pred             CCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccceeEEee-----ecCceeeEeEEecCCcccCCCcEEEEEEc
Q 008058          198 HPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSASCVLAM-----EHPAVFMDCRCIDNGGVDDAGLYVLAISE  272 (579)
Q Consensus       198 h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~  272 (579)
                      -...+..|.+.+....|+.+= ++.-|..++...........+...     .....-+....-+    +.+|.+|++.-.
T Consensus       178 ~~~q~EGCVvDde~~~LyisE-E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~----~~~GylivSsQG  252 (353)
T d1h6la_         178 MNSQTEGMAADDEYGSLYIAE-EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAA----DGKGYLLASSQG  252 (353)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE-TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECG----GGCEEEEEEEGG
T ss_pred             CCCccceEEEeCCCCcEEEec-CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcC----CCCeEEEEEcCC
Confidence            346788999999888888874 565555555443221111122111     1122223333222    023344444445


Q ss_pred             CCeEEEEECCCc
Q 008058          273 TGVCYIWYGQNI  284 (579)
Q Consensus       273 dg~i~iwd~~~~  284 (579)
                      +++..+||.++.
T Consensus       253 ~n~f~vydr~~~  264 (353)
T d1h6la_         253 NSSYAIYERQGQ  264 (353)
T ss_dssp             GTEEEEEESSTT
T ss_pred             CCeEEEEecCCC
Confidence            889999997653

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.74  Score=40.38  Aligned_cols=173  Identities=9%  Similarity=-0.023  Sum_probs=76.0

Q ss_pred             CeEEEEEccCCeEEEEe--cCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeeEeecCCC-CeeEEEE
Q 008058           96 GDVLALAVSAGQLKWRL--SDCHPGGVSAISFATHGSCIYSAGADGM-----VCEIDPLTGSLLGKFRASTK-GISCMAV  167 (579)
Q Consensus        96 g~i~iwd~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~~~-~v~~l~~  167 (579)
                      .++.+||+.+......-  ..... .-.++.+  +++.++.++.++.     +..+|..+..-...-..... .-.+...
T Consensus        70 ~~~~~yd~~~~~w~~~~~~p~~r~-~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  146 (288)
T d1zgka1          70 SALDCYNPMTNQWSPCAPMSVPRN-RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  146 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCB-TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             chhhhcccccccccccccccceec-ceecccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeee
Confidence            35889998887664211  11111 1122222  5555555543333     44566655432221111111 1112222


Q ss_pred             ccCCCEEEEEC-------CeEEEEECCCCeeeEEeecCC--CCEEEEEEecCCCEEEEEecCC----CeEEEEEcCCCcc
Q 008058          168 SSDGKMLATAA-------GQLKTFNCSDHKKMQKFSGHP--GAVRFMTFSDNGKYVLSSAVGE----RYIALWRTDGVKK  234 (579)
Q Consensus       168 ~p~g~~l~~~~-------g~i~vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~l~s~s~~d----~~i~vwd~~~~~~  234 (579)
                      . ++.+++.|+       ..+..||..+.+... .....  ....+... .++..++.++...    .....+|..+.+.
T Consensus       147 ~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         147 L-NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             e-eecceEecCcccccccceEEEeecccccccc-ccccccccccccccc-eeeeEEEecCccccccccceeeeeecceee
Confidence            2 455555554       468889987765332 11111  11112222 2344555544211    2456677666542


Q ss_pred             ccceeEEeeecCceeeEeEEecCCcccCCCcEEEEEEcCC-----eEEEEECCCc
Q 008058          235 QSASCVLAMEHPAVFMDCRCIDNGGVDDAGLYVLAISETG-----VCYIWYGQNI  284 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~  284 (579)
                      .   .+...........++ .      .+++.++.|+.++     .+.+||+++.
T Consensus       224 ~---~~~~~p~~r~~~~~~-~------~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         224 T---FVAPMKHRRSALGIT-V------HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             E---ECCCCSSCCBSCEEE-E------ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             e---cccCccCcccceEEE-E------ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            2   111111111111222 2      3567777776544     3777887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.00  E-value=1.9  Score=42.43  Aligned_cols=79  Identities=20%  Similarity=0.431  Sum_probs=52.2

Q ss_pred             CcEEEEeCCCCceeeEeecCCCCeeEEEEccCCCEEEEEC--CeEEEEECCCCeeeEEeecCCCC-EEEEEEecCCC-EE
Q 008058          139 GMVCEIDPLTGSLLGKFRASTKGISCMAVSSDGKMLATAA--GQLKTFNCSDHKKMQKFSGHPGA-VRFMTFSDNGK-YV  214 (579)
Q Consensus       139 g~v~iwd~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~--g~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~-~l  214 (579)
                      |.+.-+|+.+|+.+..+..+. ++..-.++-.|.++++|+  |.++.+|.++|+.+-++.-.... -.-+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            578889999998888766433 222212334566777777  89999999999999888632211 11256777885 55


Q ss_pred             EEEe
Q 008058          215 LSSA  218 (579)
Q Consensus       215 ~s~s  218 (579)
                      ++.+
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.39  E-value=2.1  Score=40.18  Aligned_cols=191  Identities=9%  Similarity=0.068  Sum_probs=100.1

Q ss_pred             CcEEEEE-ECCCe----EEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCC----------------CcEEEE
Q 008058           86 SSLLVLG-TGGGD----VLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGAD----------------GMVCEI  144 (579)
Q Consensus        86 ~~~l~~~-~~~g~----i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~d----------------g~v~iw  144 (579)
                      +++++.+ +.+|.    |+++|+.+++.+......  .....+.|.+|++.|+....+                ..|..|
T Consensus       136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h  213 (430)
T d1qfma1         136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH  213 (430)
T ss_dssp             SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred             CCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence            5555544 44554    999999999876433221  112568899999987765433                257788


Q ss_pred             eCCCCce--eeEeecCC--CCeeEEEEccCCCEEEEEC-----Ce--EEEEECCCCe--------eeEEeecCCCCEEEE
Q 008058          145 DPLTGSL--LGKFRAST--KGISCMAVSSDGKMLATAA-----GQ--LKTFNCSDHK--------KMQKFSGHPGAVRFM  205 (579)
Q Consensus       145 d~~~~~~--~~~~~~~~--~~v~~l~~~p~g~~l~~~~-----g~--i~vwd~~~~~--------~~~~~~~h~~~v~~l  205 (579)
                      .+.+...  +..+....  ..+..+..++++++++...     +.  +.+.|+....        ....+........- 
T Consensus       214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (430)
T d1qfma1         214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-  292 (430)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-
T ss_pred             ECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEE-
Confidence            8766532  23344333  3466778899999877432     23  4555554321        11222322333332 


Q ss_pred             EEecCCCEEEEEec--CCCeEEEEEcCCCccccceeEEeeecCc-eeeEeEEecCCcccCCCcEEE-EEEcCC--eEEEE
Q 008058          206 TFSDNGKYVLSSAV--GERYIALWRTDGVKKQSASCVLAMEHPA-VFMDCRCIDNGGVDDAGLYVL-AISETG--VCYIW  279 (579)
Q Consensus       206 ~~~~~~~~l~s~s~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-s~~~dg--~i~iw  279 (579)
                      ..+.++.+++.+..  .++.|...++..........+.. .+.. .......+       .+.+|+ ....++  .|+++
T Consensus       293 ~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~-~~~~~~~~~~~~~-------~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACV-------RSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC-CCSSCEEEEEEEE-------TTTEEEEEEEETTEEEEEEE
T ss_pred             EecCCceeecccCcccccceeEEecCCCCccccceEEec-ccCcceeeeEEEE-------ECCEEEEEEEcCCEeEEEEE
Confidence            22333434443321  13567777776554322222221 1222 22233333       234454 445665  68889


Q ss_pred             ECCCceee
Q 008058          280 YGQNIEEL  287 (579)
Q Consensus       280 d~~~~~~~  287 (579)
                      +..++...
T Consensus       365 ~~~~~~~~  372 (430)
T d1qfma1         365 DLATGALL  372 (430)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcEE
Confidence            98877543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.95  E-value=2.1  Score=38.63  Aligned_cols=130  Identities=8%  Similarity=-0.002  Sum_probs=73.6

Q ss_pred             EEEEEE---CCCeEEEEEccCCe--EE--EEecCCCCCCEEEEEEccCCCEEEEEeC---------------CCcEEEEe
Q 008058           88 LLVLGT---GGGDVLALAVSAGQ--LK--WRLSDCHPGGVSAISFATHGSCIYSAGA---------------DGMVCEID  145 (579)
Q Consensus        88 ~l~~~~---~~g~i~iwd~~~~~--~~--~~~~~~h~~~V~~l~~~~~~~~l~s~~~---------------dg~v~iwd  145 (579)
                      .|++..   ....|-+|++....  ..  ..+........+++.+..+|.+++|-..               -++..+|.
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~  192 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  192 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence            444443   34558888876432  22  2222233456899999999987777311               02233333


Q ss_pred             CCCCceeeEeecCCCCeeEEEEccCCCEEEEEC---CeEEEEECCCCeeeEE--eecCCCCEEEEEEecCCCEEEEEe
Q 008058          146 PLTGSLLGKFRASTKGISCMAVSSDGKMLATAA---GQLKTFNCSDHKKMQK--FSGHPGAVRFMTFSDNGKYVLSSA  218 (579)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~---g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~s  218 (579)
                      ...++. ......-...+.|+++||+++|+++.   +.|++|++.....+..  ...-.+..-.+.+.+.+..+.+++
T Consensus       193 ~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         193 YSPNDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             ECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EcCCce-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            333332 22222234678999999999988886   7999999875432221  112334456778876433334443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.92  E-value=2.2  Score=38.60  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=83.6

Q ss_pred             CCeEEEEEccCCeEEE---EecCCC----CCCEEEEEE--ccCCCE-EEEEe---CCCcEEEEeCCCCce----eeEeec
Q 008058           95 GGDVLALAVSAGQLKW---RLSDCH----PGGVSAISF--ATHGSC-IYSAG---ADGMVCEIDPLTGSL----LGKFRA  157 (579)
Q Consensus        95 ~g~i~iwd~~~~~~~~---~~~~~h----~~~V~~l~~--~~~~~~-l~s~~---~dg~v~iwd~~~~~~----~~~~~~  157 (579)
                      .|.|.++|+.+.+...   .+....    .-...++.+  .++|.. |++..   ...+|.+|++.....    +.++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4889999987654321   111111    123455554  446654 55543   456788888754321    122222


Q ss_pred             C-CCCeeEEEEccCCCEEEEEC-----------------CeEEEEECCCCeeeEEeecCCCCEEEEEEecCCCEEEEEec
Q 008058          158 S-TKGISCMAVSSDGKMLATAA-----------------GQLKTFNCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAV  219 (579)
Q Consensus       158 ~-~~~v~~l~~~p~g~~l~~~~-----------------g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~  219 (579)
                      . ....+.+++..+|.++++-.                 +...+|....++.. .....-...+.|+++||+++|+.+..
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECCCCCEEEEEeC
Confidence            2 23678999999999988832                 13344544444332 22223356789999999999888877


Q ss_pred             CCCeEEEEEcCCCc
Q 008058          220 GERYIALWRTDGVK  233 (579)
Q Consensus       220 ~d~~i~vwd~~~~~  233 (579)
                      ..+.|++|++....
T Consensus       226 ~~~~i~~y~~~~~~  239 (340)
T d1v04a_         226 LAHKIHVYEKHANW  239 (340)
T ss_dssp             GGTEEEEEEECTTS
T ss_pred             CCCeEEEEEeCCCc
Confidence            78899999997654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=7.2  Score=35.44  Aligned_cols=142  Identities=8%  Similarity=0.056  Sum_probs=82.7

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CceeeEeecCCCCeeEEEEccCCCEEEEEC-CeEEEEECC
Q 008058          118 GGVSAISFATHGSCIYSAGADGMVCEIDPLT---------GSLLGKFRASTKGISCMAVSSDGKMLATAA-GQLKTFNCS  187 (579)
Q Consensus       118 ~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~v~~l~~~p~g~~l~~~~-g~i~vwd~~  187 (579)
                      ....-++.++...+++.|+.++ +++..+..         .......+..-..|..++|+.+  .++... +.+..++..
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~~l~~~~~~  113 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRNALYSLDLE  113 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESSEEEEEESS
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCCCEEEEEee
Confidence            3456778888777888887775 55665321         1000111112236889999754  444444 888888887


Q ss_pred             CCeeeEEeecCCCCEEEEEEecCCCEEEEEecCCCeEEEEEcCCCccccce-eEEeeecCceeeEeEEecCCcccCCCcE
Q 008058          188 DHKKMQKFSGHPGAVRFMTFSDNGKYVLSSAVGERYIALWRTDGVKKQSAS-CVLAMEHPAVFMDCRCIDNGGVDDAGLY  266 (579)
Q Consensus       188 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~s~~d~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      .-........-..++.++.+.|..  ++... .++.+.++++..++..... .+....-. ....+++|+     +.|..
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~~--~~l~~-~~~~~~~~~l~~~~~~~~~~~v~~~~~~-~~~~~v~ws-----~kgkq  184 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNNT--LVILN-SVNDLSALDLRTKSTKQLAQNVTSFDVT-NSQLAVLLK-----DRSFQ  184 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSSE--EEEEE-TTSEEEEEETTTCCEEEEEESEEEEEEC-SSEEEEEET-----TSCEE
T ss_pred             ccccccccccccccccceecCCce--eEEEe-cCCCEEEEEeccCccccccCCcceEEec-CCceEEEEe-----CCcEE
Confidence            654444444456678888888764  34444 4899999999887532100 00011111 224556665     67777


Q ss_pred             EEEEE
Q 008058          267 VLAIS  271 (579)
Q Consensus       267 l~s~~  271 (579)
                      ++++.
T Consensus       185 ~v~~~  189 (381)
T d1xipa_         185 SFAWR  189 (381)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            77763

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.62  E-value=7.7  Score=35.25  Aligned_cols=126  Identities=6%  Similarity=-0.040  Sum_probs=71.6

Q ss_pred             EEEEEECCCeEEEEEccCCeEEEEecCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeeEee-----cCCCCe
Q 008058           88 LLVLGTGGGDVLALAVSAGQLKWRLSDCHPGGVSAISFATHGSCIYSAGADGMVCEIDPLTGSLLGKFR-----ASTKGI  162 (579)
Q Consensus        88 ~l~~~~~~g~i~iwd~~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~v  162 (579)
                      .+++ ..++.+..++...-...... ..-..++.++.++|.  .++....+|.+.++++..++......     .-.+.+
T Consensus        98 ~l~v-~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~  173 (381)
T d1xipa_          98 QVLV-STRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ  173 (381)
T ss_dssp             EEEE-EESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE
T ss_pred             EEEE-EeCCCEEEEEeecccccccc-ccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCc
Confidence            3444 45566777777653222111 123457888888775  56667789999999998886433211     123567


Q ss_pred             eEEEEccCCCEEEEECCe-EEEE-ECCCCeeeEEeecCCCCEEEEEEecCCCEEEEE
Q 008058          163 SCMAVSSDGKMLATAAGQ-LKTF-NCSDHKKMQKFSGHPGAVRFMTFSDNGKYVLSS  217 (579)
Q Consensus       163 ~~l~~~p~g~~l~~~~g~-i~vw-d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~  217 (579)
                      .+++|++.|+.++++.|. ..+- ++.....+.........|.+|.|-.+..++++-
T Consensus       174 ~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         174 LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            888888888888777632 2221 111111110001233467888888766665544