Citrus Sinensis ID: 008070
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GX78 | 541 | Probable anion transporte | yes | no | 0.770 | 0.824 | 0.745 | 0.0 | |
| Q652N5 | 591 | Probable anion transporte | yes | no | 0.794 | 0.778 | 0.706 | 0.0 | |
| Q9SDI4 | 529 | Probable anion transporte | no | no | 0.654 | 0.716 | 0.756 | 0.0 | |
| O82390 | 512 | Sodium-dependent phosphat | no | no | 0.680 | 0.769 | 0.697 | 1e-177 | |
| Q7XJR2 | 512 | Probable anion transporte | no | no | 0.720 | 0.814 | 0.376 | 3e-77 | |
| Q8W0H5 | 519 | Probable anion transporte | no | no | 0.611 | 0.682 | 0.403 | 2e-72 | |
| Q66GI9 | 533 | Probable anion transporte | no | no | 0.611 | 0.664 | 0.400 | 2e-72 | |
| Q53WP9 | 535 | Probable anion transporte | no | no | 0.618 | 0.669 | 0.396 | 3e-69 | |
| Q3E9A0 | 517 | Probable anion transporte | no | no | 0.671 | 0.752 | 0.356 | 3e-66 | |
| Q2QWW7 | 439 | Probable anion transporte | no | no | 0.652 | 0.861 | 0.330 | 3e-65 |
| >sp|Q8GX78|ANTR2_ARATH Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/492 (74%), Positives = 405/492 (82%), Gaps = 46/492 (9%)
Query: 124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
R S G + QP+ + I R +K +R A+YKS+E DITE V S + +
Sbjct: 60 RRSFGCFLQPRMDSVIRFRN-------SIKINRSRAYYKSEESDITEGVVPSADGS---A 109
Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR-------------------- 223
EA+L +G+LQ SPWW+QFP+RWV+VLLCFS+FLLCNMDR
Sbjct: 110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169
Query: 224 ----------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 267
I+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct: 170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229
Query: 268 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 327
RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct: 230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289
Query: 328 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 387
SVFYSFGSLGSIWF LWLK AYSSPK+DP+L EEK+ ILGGS +E V+VIPWKLILSK
Sbjct: 290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349
Query: 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447
PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct: 350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409
Query: 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 507
ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGL
Sbjct: 410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGL 469
Query: 508 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567
YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLV
Sbjct: 470 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLV 529
Query: 568 WNLFATGERVLE 579
WNLFATGE++L+
Sbjct: 530 WNLFATGEKILD 541
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q652N5|PHT44_ORYSJ Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/500 (70%), Positives = 399/500 (79%), Gaps = 40/500 (8%)
Query: 116 KCECYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDS 175
+ EC+ +S GW +P+ D + Q R A K+++Y+IT +
Sbjct: 96 RIECFLTSDPINTGWLKPRRWDNFTSLDTACVQPDYKIPVRTRADCKAEQYEITGSP--- 152
Query: 176 LQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR------------ 223
L +++P+EAVL GD E SPWW+QFPKRW VVLLCF +FLLCNMDR
Sbjct: 153 LSPSDVPAEAVL-IGDTNEISPWWQQFPKRWTVVLLCFFSFLLCNMDRVNMSIAILPMSS 211
Query: 224 ------------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI 259
I+GGIWAD+FGGK VLGFGV+WWS+ATVLTP+AA+I
Sbjct: 212 EFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKI 271
Query: 260 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI 319
GLPFLL+MRAFMGIGEGVAMPAMNN+LSKW+PVSERSRSLA VYSGMYLGSVTGLA SP+
Sbjct: 272 GLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPL 331
Query: 320 LIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVI 379
LI +FGWPSVFY+FGSLGS+WFALW +KA+SSP EDPEL EKR+ILGGS KE V+ I
Sbjct: 332 LISRFGWPSVFYAFGSLGSVWFALWQRKAHSSPSEDPELSKAEKRYILGGSTLKEPVTSI 391
Query: 380 PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439
PWKLILSK PVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMA+
Sbjct: 392 PWKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAI 451
Query: 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGS 499
FAN+GGWIADTLV +G+SIT VRKIMQSIGFLGPA FLT LS VRTPAMAVLCMACSQGS
Sbjct: 452 FANIGGWIADTLVGRGVSITNVRKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGS 511
Query: 500 DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV 559
DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ+GSWD VF+VAVV
Sbjct: 512 DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVV 571
Query: 560 LYIIGTLVWNLFATGERVLE 579
LYI+GT+VWN+F+TGE+VLE
Sbjct: 572 LYIVGTVVWNVFSTGEKVLE 591
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Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9SDI4|PHT41_ORYSJ Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/415 (75%), Positives = 341/415 (82%), Gaps = 36/415 (8%)
Query: 201 QFPKRWVVVLLCFSAFLLCNMDR------------------------------------I 224
QFPKRW +V LCFSAFLLCNMDR I
Sbjct: 115 QFPKRWAIVFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQI 174
Query: 225 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284
GGIWAD GGK VLGFGVIWWS+AT LTP AA++GLPFLL+ RAFMG+GEGVAMPAMNN
Sbjct: 175 AGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLGLPFLLVTRAFMGVGEGVAMPAMNN 234
Query: 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 344
+LSKW+PVSERSRSLA VYSGMYLGSVTGLA SP+LI FGWPSVFYSFGSLG WF+ W
Sbjct: 235 ILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLIHNFGWPSVFYSFGSLGVFWFSTW 294
Query: 345 LKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGT 404
KAYSSP EDP + AEEK+ I + E V IPW LILSK PVWALI+SHFCHNWGT
Sbjct: 295 ASKAYSSPLEDPGISAEEKKLITSQTTGGEPVKEIPWGLILSKPPVWALIVSHFCHNWGT 354
Query: 405 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKI 464
FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV AN GGWIADTLVS+GLS+T VRKI
Sbjct: 355 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVSANFGGWIADTLVSRGLSVTTVRKI 414
Query: 465 MQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524
MQSIGFLGPAFFLTQLSH+ +PAMAVLCMACSQG+DAFSQSGLYSNHQDIGPRYAGVLLG
Sbjct: 415 MQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLG 474
Query: 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE 579
LSNTAGVLAGVFGTAATGYILQ GSWDDVFKV+VVLY++GTLVWNLF+TGE++++
Sbjct: 475 LSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O82390|ANTR1_ARATH Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 620 bits (1600), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/430 (69%), Positives = 341/430 (79%), Gaps = 36/430 (8%)
Query: 186 VLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR---------------------- 223
V+ D PWWE+FPKRWV+VLLCFSAFLLCNMDR
Sbjct: 83 VVSDSPSSIVLPWWEEFPKRWVIVLLCFSAFLLCNMDRVNMSIAILPMSAEYGWNPATVG 142
Query: 224 --------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 269
I GGIWAD GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RA
Sbjct: 143 LIQSSFFWGYLLTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRA 202
Query: 270 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 329
FMG+GEGVAMPAMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSV
Sbjct: 203 FMGVGEGVAMPAMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSV 262
Query: 330 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 389
FYSFGSLG++W LWL KA SSP EDP L EE++ I SKE V IPW+LILSK P
Sbjct: 263 FYSFGSLGTVWLTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPP 322
Query: 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 449
VWALI HFCHNWGTFILLTWMPTYY+QVLKFNL ESGL V PW+TMA+ AN GGWIAD
Sbjct: 323 VWALISCHFCHNWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIAD 382
Query: 450 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509
TLVS+G S+T VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQG+DAFSQSGLYS
Sbjct: 383 TLVSRGFSVTNVRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYS 442
Query: 510 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 569
NHQDI PRY+GVLLGLSNTAGVLAGV GTAATG+ILQ GSWDDVF ++V LY++GT++WN
Sbjct: 443 NHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWN 502
Query: 570 LFATGERVLE 579
LF+TGE++++
Sbjct: 503 LFSTGEKIID 512
|
Specific for inorganic phosphate transport across the thylakoid membrane in a sodium dependent manner. Binds glutamate but cannot transport it. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XJR2|ANTR3_ARATH Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 173/460 (37%), Positives = 242/460 (52%), Gaps = 43/460 (9%)
Query: 162 KSDEYDITEAKVDSLQSTE-IPSEAVLPDGDLQET-SPWWEQFPKRWVVVLLCFSAFLLC 219
+SD A QS E +E VL G E + P+R VV+L LC
Sbjct: 53 ESDGKRRNAAAKKRNQSPERCAAEGVLTGGGGSEAIAEVRTMMPERIKVVILTACMMCLC 112
Query: 220 NMDRIV------------------------------------GGIWADKFGGKPVLGFGV 243
N DR+V GG D++GGK VL +GV
Sbjct: 113 NADRVVMSVAVVPLADKLGWSSSFLGVVQSSFLWGYIFSSVIGGALVDRYGGKRVLAWGV 172
Query: 244 IWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 303
WS+AT+LTP AA LL +RAF G+ EGVAMP+M +LS+W P+ ER+ ++
Sbjct: 173 ALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMTTLLSRWFPMDERASAVGISM 232
Query: 304 SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363
+G ++G+V GL ++P+++ G F F SLG +W + W ++P++ P + E
Sbjct: 233 AGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVSTWSSGVTNNPQDSPFITRSEL 292
Query: 364 RHILGGS-ISKEAVSVIP---WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL 419
R I G + +S P +L+LSK P WA+I ++ +NWG F+LL+WMP Y+ V
Sbjct: 293 RLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVTNNWGYFVLLSWMPVYFQTVF 352
Query: 420 KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ 479
NL ++ F LPW TMA+ G +D L+ G S+T+VRKIMQSIGF+GP L
Sbjct: 353 NVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVTSVRKIMQSIGFMGPGLSLLC 412
Query: 480 LSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTA 539
L+ ++P+ A + M + +FSQ+G N QDI P+YAG L G+SN AG LA + T
Sbjct: 413 LNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTI 472
Query: 540 ATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 578
TGY +Q GS+ V LY T+ W LFATGERV
Sbjct: 473 GTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERVF 512
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W0H5|PHT43_ORYSJ Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 212/362 (58%), Gaps = 8/362 (2%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
I+GG D +GGK V+ +GV WS+AT L+P AA L L R +G+ EGVA+P+MN
Sbjct: 152 IIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGVALPSMN 211
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
NM+ +W P +ERS ++ +G LG+ GL +SPI++ + G F FG G +W +
Sbjct: 212 NMVLRWFPRTERSSAVGIAMAGFQLGNTIGLLLSPIIMSRAGIFGPFVIFGLFGFLWVLV 271
Query: 344 WLKKAYSSPKEDPELRAEEKRHILGG-------SISKEAVSVIPWKLILSKAPVWALIIS 396
W+ +P E+ ++ A E +I G S + V P+ +LSK P WALI +
Sbjct: 272 WISAISGTPGENAQISAHELDYITRGQKLVKTQSGGERLRKVPPFSKLLSKWPTWALISA 331
Query: 397 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL 456
+ H+WG F++L+WMP Y+ + NL E+ F LPW+ MAV + G ++D L+ G
Sbjct: 332 NAMHSWGYFVILSWMPVYFKTIYHVNLREAAWFSALPWVMMAVLGYVAGVVSDRLIQNGT 391
Query: 457 SITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP 516
SIT RKIMQ+IGF+GP L L+ ++P +A + + G +F SG N Q+I P
Sbjct: 392 SITLTRKIMQTIGFVGPGVALLGLNAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAP 451
Query: 517 RYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATGE 575
+YAGVL G+SNTAG A + GT G+ + R GS+ + +LY TL W++FATGE
Sbjct: 452 QYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGE 511
Query: 576 RV 577
RV
Sbjct: 512 RV 513
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q66GI9|ANTR4_ARATH Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 217/362 (59%), Gaps = 8/362 (2%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
I GG D++GGK V+ +GV WS+AT LTP AA L LL RA +G+ EGVA+P MN
Sbjct: 166 IAGGTLVDRYGGKVVMAWGVALWSLATFLTPWAADSSLWALLAARAMVGVAEGVALPCMN 225
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
NM+++W P +ERSR++ +G LG+V GL +SPIL+ + G F FG G +W +
Sbjct: 226 NMVARWFPPTERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFVIFGLSGFLWLLV 285
Query: 344 WLKKAYSSPKEDPELRAEEKRHILG----GSISKEAVS---VIPWKLILSKAPVWALIIS 396
WL S+P P++ E +I ++ + +S + P+ +LSK P WA+I++
Sbjct: 286 WLSATSSAPDRHPQITKSELEYIKQKKQISTMENKRISTSGIPPFGRLLSKMPTWAVIVA 345
Query: 397 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL 456
+ H+WG F++L+WMP Y+N V NL ++ F +PW MA + G+ +D L+ +G
Sbjct: 346 NSMHSWGFFVILSWMPIYFNSVYHVNLKQAAWFSAVPWSMMAFTGYIAGFWSDLLIRRGT 405
Query: 457 SITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP 516
SIT RKIMQSIGF+GP L L+ + P +A ++ + G +FS G N Q+I P
Sbjct: 406 SITLTRKIMQSIGFIGPGIALIGLTTAKQPLVASAWLSLAVGLKSFSHLGFLINLQEIAP 465
Query: 517 RYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGE 575
Y+GVL G+ TAG LA + GT G+ ++ GS+ + +LY++ L +N++ATGE
Sbjct: 466 EYSGVLHGMCLTAGTLAAIVGTVGAGFFVELLGSFQGFILLTAILYLLSALFYNIYATGE 525
Query: 576 RV 577
RV
Sbjct: 526 RV 527
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q53WP9|PHT42_ORYSJ Probable anion transporter 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (672), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/361 (39%), Positives = 204/361 (56%), Gaps = 3/361 (0%)
Query: 222 DRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPA 281
+VGG AD++GGK V+ WS+AT LTP AA LL +RA G+ EGVA P
Sbjct: 175 SSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQSTIMLLAIRALFGLAEGVAFPT 234
Query: 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWF 341
M+ L KW P ER+ ++ G +LG+V +PI++ G F F SLG +W
Sbjct: 235 MSTFLPKWFPTHERATAVGISMGGFHLGNVISFLATPIIMSHIGLAGTFAFFASLGYLWL 294
Query: 342 ALWLKKAYSSPKEDPELRAEEKRHILGG-SISKEAVSVIP-WKLILSKAPVWALIISHFC 399
++WL S P + + E + IL G S SK S P + ILSK +WA+I+++
Sbjct: 295 SVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVANVV 354
Query: 400 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT 459
+NWG F+LL+WMP Y+ V NL ++ F +PW MA+ + G AD L+ G S+
Sbjct: 355 NNWGYFVLLSWMPVYFKTVYNVNLKQAAWFSAIPWAVMALSGYVAGASADFLIKSGFSVA 414
Query: 460 AVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 519
VRKIMQSIGF+GP L L +TP++A + M + +FSQ+G + N QDI P+YA
Sbjct: 415 LVRKIMQSIGFIGPGVSLLCLRFAQTPSVAAVLMTIALSLSSFSQAGYFCNVQDIAPKYA 474
Query: 520 GVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 578
G L GL+N G +A + T TGY +Q GS+ + VLY T+ +N +ATG+ +
Sbjct: 475 GSLHGLTNGIGTVAAIVSTIGTGYFVQWLGSFQAFLTLTAVLYFSATVFYNTYATGDLIF 534
Query: 579 E 579
+
Sbjct: 535 D 535
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q3E9A0|ANTR6_ARATH Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 155/435 (35%), Positives = 229/435 (52%), Gaps = 46/435 (10%)
Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDRI------------------- 224
E + + ++ P W+ P+R+ ++ AF++CNMD++
Sbjct: 77 EVLSTETGFEQNWPPWKNIPQRYKLIGATSLAFVICNMDKVNLSIAIIPMSHQFGWSSSV 136
Query: 225 ----------------VGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 267
+ G W K FGG+ VL GV WS AT L P+ A +P L+
Sbjct: 137 AGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFS 195
Query: 268 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 327
R +GIGEGV+ A +++++ IPV ERSR++ FV+ G+ LGSV GL ++P +I+ F W
Sbjct: 196 RILVGIGEGVSPSAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWE 255
Query: 328 SVFYSFGSLGSIWFA--LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL 385
SVFY FG LG WF +L + S K + E+ K ++ IPWK
Sbjct: 256 SVFYLFGLLGVGWFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSSLKEIPWKSFF 314
Query: 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445
VWA+I +HFC +WG + L+W+PTY+++ L NLTE+ +LP L V ++
Sbjct: 315 QSPAVWAMIYTHFCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLAS 374
Query: 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT---PAMAVLCMACSQGSDAF 502
AD L++ G+ T VRKI Q+I F+ PA +T LS V P V + +F
Sbjct: 375 QFADYLITNGVDTTTVRKICQTIAFVAPAICMT-LSSVDIGLPPWEIVGILTAGLALSSF 433
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWD-DVFKVAVVL 560
+ SGLY HQDI P YA +LLG++NT G + G+ G A TG++L SW +F ++
Sbjct: 434 ALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFF 493
Query: 561 YIIGTLVWNLFATGE 575
Y+ GT+VW FA+ E
Sbjct: 494 YLTGTVVWLAFASSE 508
|
Inorganic phosphate and probable anion transporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2QWW7|PHT47_ORYSJ Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/433 (33%), Positives = 233/433 (53%), Gaps = 55/433 (12%)
Query: 201 QFPKRWVVVLLCFSAFLLCNMDR------------------------------------I 224
+FPKR+V+VLL F +C ++R I
Sbjct: 8 KFPKRYVIVLLTFICTNVCYIERVGFSIAYTVAADAIGVNQANKGMILSMFYYGYVLSQI 67
Query: 225 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284
GG A + GG+ VL + WS+ L P+ + + L++ R F+G+ +G PA++
Sbjct: 68 PGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKREV-ILVLSRLFVGVAQGFIFPAIHT 126
Query: 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALW 344
+L++W+P ERSRS++ SGMYLG+ G+ P L++ G SVF+ LG W +W
Sbjct: 127 VLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFPSLVKHMGAQSVFFVEAVLGVAWSVIW 186
Query: 345 LKKAYSSPKED------PELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF 398
LK + P+ D P++ + EK G + IPW+ I+ PVWA+++++F
Sbjct: 187 LKFSSEPPRTDLPKVSMPKVASREKIKAQAGGVVAPRTVKIPWRRIIFSLPVWAIVVNNF 246
Query: 399 CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LS 457
++ ++L+ W+PTY+ L+ +L + G +LP+ M +F+N+GG +AD L+++ LS
Sbjct: 247 TFHYALYVLMNWLPTYFELGLQLSLQDMGSSKMLPYFNMFIFSNIGGVVADHLITRRILS 306
Query: 458 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR 517
IT RK++ +IGF+ A L L RTP+ VLC + S G A ++G NH D+ P+
Sbjct: 307 ITKTRKLLNTIGFVVSAVALMALPLFRTPSGTVLCSSISLGFLALGRAGFAVNHMDVAPK 366
Query: 518 YAGVLLGLSNTAGVLAGVFGTAATGYILQRG-----------SWDDVFKVAVVLYIIGTL 566
+AG+++G+SNTAG LAG+ G TG IL+ +W VF V L I ++
Sbjct: 367 FAGIVMGVSNTAGTLAGIVGVGLTGSILEGAKASNMDLTNSETWKTVFFVPGYLCIFSSI 426
Query: 567 VWNLFATGERVLE 579
++ +F+TGE++ E
Sbjct: 427 IFLIFSTGEKIFE 439
|
Probable anion transporter. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| 225454266 | 615 | PREDICTED: probable anion transporter 2, | 0.996 | 0.938 | 0.708 | 0.0 | |
| 255541620 | 571 | Sialin, putative [Ricinus communis] gi|2 | 0.924 | 0.936 | 0.697 | 0.0 | |
| 297745310 | 575 | unnamed protein product [Vitis vinifera] | 0.927 | 0.933 | 0.679 | 0.0 | |
| 356520396 | 592 | PREDICTED: probable anion transporter 2, | 0.946 | 0.925 | 0.653 | 0.0 | |
| 356504368 | 593 | PREDICTED: probable anion transporter 2, | 0.958 | 0.935 | 0.649 | 0.0 | |
| 449432150 | 600 | PREDICTED: probable anion transporter 2, | 0.967 | 0.933 | 0.652 | 0.0 | |
| 449480201 | 600 | PREDICTED: probable anion transporter 2, | 0.967 | 0.933 | 0.652 | 0.0 | |
| 357514557 | 588 | Sodium-dependent phosphate transport pro | 0.949 | 0.935 | 0.640 | 0.0 | |
| 356576959 | 597 | PREDICTED: probable anion transporter 2, | 0.965 | 0.936 | 0.645 | 0.0 | |
| 30678625 | 541 | putative anion transporter 2 [Arabidopsi | 0.770 | 0.824 | 0.745 | 0.0 |
| >gi|225454266|ref|XP_002275090.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/617 (70%), Positives = 476/617 (77%), Gaps = 40/617 (6%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MAIG +IS RNFGSF+GSGK Y+ EP Q KG R SV + + N +RL M N
Sbjct: 1 MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
IS +++ L V G+ D KAL IA H P+ LQ ++KF + P +R C+
Sbjct: 59 SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118
Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
CY SS SL W QP R+G +S S V+ R + YKS EYDI A VDSL+S
Sbjct: 119 CYLSSNPSLSSWIQPSKRARLGISDSQSQSSEHVRFGRTRSAYKSKEYDIKGADVDSLKS 178
Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------------- 223
+E E +L + +LQ SPWW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 179 SEGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 238
Query: 224 ---------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 262
I+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 239 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 298
Query: 263 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 322
FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 299 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 358
Query: 323 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 382
KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL EEKR ILGGS SKE VS IPWK
Sbjct: 359 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 418
Query: 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442
LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 419 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 478
Query: 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 502
+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQGSDAF
Sbjct: 479 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQGSDAF 538
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562
SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW DVFKVAVVLYI
Sbjct: 539 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWGDVFKVAVVLYI 598
Query: 563 IGTLVWNLFATGERVLE 579
IGTLVWNLFATGE++L+
Sbjct: 599 IGTLVWNLFATGEKILD 615
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541620|ref|XP_002511874.1| Sialin, putative [Ricinus communis] gi|223549054|gb|EEF50543.1| Sialin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/615 (69%), Positives = 467/615 (75%), Gaps = 80/615 (13%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MAIGSLIS RN GSF+GSGK+ +E I Q KGER I+ R GN++ ++ S MA
Sbjct: 1 MAIGSLISNRNLGSFIGSGKV--REQAILQHKGERPSIAAARFAHGNIFYRKCHSQMAIS 58
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
S + +L V +S EK K +A P +R+ +C C
Sbjct: 59 YTSGFSCSPVLRVTNHSSEKTSKSLA---------------------VPLQRSLGRCNC- 96
Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTE 180
SS +G W Q KG+ VK +R A YKS+EYDIT Q+ E
Sbjct: 97 -SSYPFVGNWLQ--------LTKGQFQHFEFVKVNRTRAHYKSEEYDIT-------QAAE 140
Query: 181 IPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR----------------- 223
SEAVL +G+L PWWEQFPKRWV+VLLCF AFLLCNMDR
Sbjct: 141 GSSEAVLVEGNL----PWWEQFPKRWVIVLLCFMAFLLCNMDRVNMSIAILPMSQEFNWN 196
Query: 224 -------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL 264
IVGGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLPFL
Sbjct: 197 SATVGLIQSSFFWGYLMTQIVGGIWADKIGGKLVLGFGVVWWSIATVLTPIAARIGLPFL 256
Query: 265 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF 324
L+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSV GLAVSP+LIQKF
Sbjct: 257 LMMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVMGLAVSPVLIQKF 316
Query: 325 GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI 384
GWPSVFYSFGSLGSIWFALWL+KAYSSPKEDPEL A+EK+ ILGGS+SKE VSVIPWKLI
Sbjct: 317 GWPSVFYSFGSLGSIWFALWLRKAYSSPKEDPELSAQEKKLILGGSVSKEPVSVIPWKLI 376
Query: 385 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444
LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA FAN+G
Sbjct: 377 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAFFANIG 436
Query: 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 504
GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ
Sbjct: 437 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 496
Query: 505 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 564
SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG
Sbjct: 497 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 556
Query: 565 TLVWNLFATGERVLE 579
TLVWNLF+TGE++L+
Sbjct: 557 TLVWNLFSTGEKILD 571
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745310|emb|CBI40390.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/617 (67%), Positives = 453/617 (73%), Gaps = 80/617 (12%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MAIG +IS RNFGSF+GSGK Y+ EP Q KG R SV + + N +RL M N
Sbjct: 1 MAIGGVISNRNFGSFIGSGKGYQTEPATAQNKGGRLSFSVAGHVRENY--KRLFMQMENY 58
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
IS +++ L V G+ D KAL IA H P+ LQ ++KF + P +R C+
Sbjct: 59 SISRYSHFPCLRVIGSPDGKALTSIATFHVEGVCCLPMSLQSSDKFWSVNPRRRIQGICK 118
Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
CY SS SL W QP R+
Sbjct: 119 CYLSSNPSLSSWIQPSKRARL--------------------------------------- 139
Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------------- 223
E E +L + +LQ SPWW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 140 -EGAGEVILAEENLQSVSPWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 198
Query: 224 ---------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 262
I+GGIWADK GGK VLGFGVIWWSVATVLTP+AARIGLP
Sbjct: 199 WNSATVGLIQSSFFWGYLLTQILGGIWADKLGGKLVLGFGVIWWSVATVLTPIAARIGLP 258
Query: 263 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 322
FLL MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLAVSP LIQ
Sbjct: 259 FLLTMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAVSPALIQ 318
Query: 323 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 382
KFGWPSVFYSFGSLGSIWFALWL KAYSSP EDPEL EEKR ILGGS SKE VS IPWK
Sbjct: 319 KFGWPSVFYSFGSLGSIWFALWLSKAYSSPAEDPELSEEEKRVILGGSTSKEPVSSIPWK 378
Query: 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442
LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 379 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 438
Query: 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 502
+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQL ++RTPA+AVLCMACSQGSDAF
Sbjct: 439 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLGNIRTPALAVLCMACSQGSDAF 498
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562
SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW DVFKVAVVLYI
Sbjct: 499 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWGDVFKVAVVLYI 558
Query: 563 IGTLVWNLFATGERVLE 579
IGTLVWNLFATGE++L+
Sbjct: 559 IGTLVWNLFATGEKILD 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520396|ref|XP_003528848.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/623 (65%), Positives = 456/623 (73%), Gaps = 75/623 (12%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKG--ERSGISVLRNTQGNMWNQRLRSPMA 58
M + LIS RNF SF SG +Y I +G SG+SV ++ W ++ P+
Sbjct: 1 MTMTGLISNRNFASFFASGNVYRSGKDISVQRGGISISGVSVAKDPFPR-WQHKMYLPL- 58
Query: 59 NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFL-----QCNEKFNRIYPWKRT 113
+E+ K + + EH + QCN K +
Sbjct: 59 -------------------EERVSKQMQTSNNKGEHRSLVSQQSSQCNFKL-------KA 92
Query: 114 NNKCECYFSSRHSLGGWFQPKAE-DRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAK 172
+ + C F G E R+G K K Q+ K ++ YKS+EYDI+E K
Sbjct: 93 SGRSRCSFLCSAPYGTNNVGHGEVYRLGLSKRKHAQTEVGKTNKFRVCYKSEEYDISETK 152
Query: 173 VDSLQSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------- 223
+D LQSTE EA+L +G SPWW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 153 MDPLQSTEGTGEAILLEG---RASPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILP 209
Query: 224 ---------------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA 256
I+GGIWADK GGK VLGFGV+WWS+ATVLTP+A
Sbjct: 210 MSQEFNWNSATVGLIQSSFFWGYLLTQIIGGIWADKLGGKLVLGFGVVWWSIATVLTPIA 269
Query: 257 ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV 316
A++GLP LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA
Sbjct: 270 AKLGLPCLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAF 329
Query: 317 SPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAV 376
SPILIQKFGWPSVFYSFGSLGSIWF LWL KAYSSPKEDP+L AEEK+ ILGG++SKE V
Sbjct: 330 SPILIQKFGWPSVFYSFGSLGSIWFVLWLSKAYSSPKEDPDLGAEEKKLILGGNVSKEPV 389
Query: 377 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436
SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT
Sbjct: 390 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 449
Query: 437 MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 496
MA+FAN+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHV+TPAMAVLCMACS
Sbjct: 450 MAIFANIGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVKTPAMAVLCMACS 509
Query: 497 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 556
QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV
Sbjct: 510 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 569
Query: 557 AVVLYIIGTLVWNLFATGERVLE 579
AV LYIIGTLVWN+F+TGE++L+
Sbjct: 570 AVALYIIGTLVWNIFSTGEKILD 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504368|ref|XP_003520968.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/617 (64%), Positives = 450/617 (72%), Gaps = 62/617 (10%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYE--KEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMA 58
M + LIS RNFGSFV SG +Y K+ + + SG+SV ++ W ++ PM
Sbjct: 1 MTMSGLISNRNFGSFVASGNVYRSGKDISVQRMGISVSGVSVAKDPSPR-WQHQMYLPM- 58
Query: 59 NGLISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCE 118
+++ K + H EH + + K
Sbjct: 59 -------------------EKRVSKPMQTSHNKGEHRSLVSQQSSQCLNFKLKACGRSHS 99
Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
+ S + R+G K K ++ K ++ YKS+EYDI+E K+D LQS
Sbjct: 100 SFLFSAPYGSNNVGHQEVYRLGLSKRKHAKTEVGKANKFRVCYKSEEYDISETKMDPLQS 159
Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------------- 223
TE EA+L +G PWW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 160 TEGTGEAILLEG---RALPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQEFN 216
Query: 224 ---------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 262
IVGGIWADK GGK VLGFGV+WWS+ATVLTP+AA+ GLP
Sbjct: 217 WNSATVGLIQSSFFWGYLLTQIVGGIWADKLGGKLVLGFGVVWWSIATVLTPIAAKFGLP 276
Query: 263 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 322
LLIMRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LIQ
Sbjct: 277 CLLIMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLIQ 336
Query: 323 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 382
KFGWPSVFYSFGSLGSIWF LWL KAYSSP EDP+L AEEK+ ILGG++SKE VSVIPWK
Sbjct: 337 KFGWPSVFYSFGSLGSIWFVLWLSKAYSSPDEDPDLGAEEKKFILGGNVSKEPVSVIPWK 396
Query: 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442
LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA+FAN
Sbjct: 397 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAIFAN 456
Query: 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 502
+GGWIADTLVSKGLSIT+VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF
Sbjct: 457 IGGWIADTLVSKGLSITSVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 516
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562
SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LYI
Sbjct: 517 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYI 576
Query: 563 IGTLVWNLFATGERVLE 579
IGTLVWN+F+TGE++L+
Sbjct: 577 IGTLVWNIFSTGEKILD 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432150|ref|XP_004133863.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/619 (65%), Positives = 447/619 (72%), Gaps = 59/619 (9%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MAIGSL+S RN GSFVGSGK+ + E ERS I + Q N+++++ N
Sbjct: 1 MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
+ A + L D K K + C P W R KC CY
Sbjct: 61 SSPKIACSTFLQSI-TRDGKLFKPLGVCTDETAGPRLPFIKSTIT----WPR--RKCRCY 113
Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
P+ G S +S VK DR A YKS+++D+T+ VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161
Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR------------- 223
E +A + + Q SPWWE FPKRWV+VLLCF +FLLCNMDR
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221
Query: 224 -----------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 260
IVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281
Query: 261 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 320
LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341
Query: 321 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 380
I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401
Query: 381 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 440
WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461
Query: 441 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 500
AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 521
Query: 501 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL 560
AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSWDDVFKV+V L
Sbjct: 522 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWDDVFKVSVAL 581
Query: 561 YIIGTLVWNLFATGERVLE 579
YIIGTLVWN+FATGE++L+
Sbjct: 582 YIIGTLVWNIFATGEKILD 600
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480201|ref|XP_004155828.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/619 (65%), Positives = 447/619 (72%), Gaps = 59/619 (9%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MAIGSL+S RN GSFVGSGK+ + E ERS I + Q N+++++ N
Sbjct: 1 MAIGSLVSNRNLGSFVGSGKVCKTEKASSHHGVERSVIFAAQYGQPNLFSRKSIGLRLNS 60
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIYPWKRTNNKCECY 120
+ A + L D K K + C P W R KC CY
Sbjct: 61 SSPKIACFTFLQSI-TRDGKLFKPLGVCTDETAGPRLPFIKSTIT----WPR--RKCRCY 113
Query: 121 FSSRHSLGGWFQPKAEDRIGTRKGKS----PQSLDVKEDRICAFYKSDEYDITEAKVDSL 176
P+ G S +S VK DR A YKS+++D+T+ VD+L
Sbjct: 114 ------------PQCTSACILTNGPSWLQCQKSQYVKVDRTSANYKSNDFDMTKGDVDAL 161
Query: 177 QSTEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR------------- 223
E +A + + Q SPWWE FPKRWV+VLLCF +FLLCNMDR
Sbjct: 162 ALAEGSGDAFFMEENEQIVSPWWESFPKRWVIVLLCFFSFLLCNMDRVNMSIAILPMSKE 221
Query: 224 -----------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG 260
IVGGIWADK GGK VLGFGV+WWS+AT+LTP+AA+IG
Sbjct: 222 FNWNSATVGLIQSSFFWGYLLTQIVGGIWADKIGGKLVLGFGVVWWSIATILTPIAAKIG 281
Query: 261 LPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 320
LPFLL+MRAFMGIGEGVAMPAMNN++SKWIPVSERSRSLA VYSGMYLGSVTGLA SPIL
Sbjct: 282 LPFLLMMRAFMGIGEGVAMPAMNNIISKWIPVSERSRSLALVYSGMYLGSVTGLAFSPIL 341
Query: 321 IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIP 380
I KFGWPSVFYSFGSLGSIWFALWL KAYSSPKEDP L A+EK+ I GSISKE V VIP
Sbjct: 342 IHKFGWPSVFYSFGSLGSIWFALWLTKAYSSPKEDPGLSAKEKKIIFDGSISKEPVKVIP 401
Query: 381 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 440
WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF
Sbjct: 402 WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 461
Query: 441 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 500
AN+GGWIADTLVS+G SIT VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD
Sbjct: 462 ANIGGWIADTLVSRGFSITTVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 521
Query: 501 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL 560
AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSWDDVFKV+V L
Sbjct: 522 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWDDVFKVSVAL 581
Query: 561 YIIGTLVWNLFATGERVLE 579
YIIGTLVWN+FATGE++L+
Sbjct: 582 YIIGTLVWNIFATGEKILD 600
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514557|ref|XP_003627567.1| Sodium-dependent phosphate transport protein [Medicago truncatula] gi|355521589|gb|AET02043.1| Sodium-dependent phosphate transport protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/617 (64%), Positives = 449/617 (72%), Gaps = 67/617 (10%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MA+ LIS RNFGSF+ SG Y + I +R GISV T R +A G
Sbjct: 1 MAMSGLISNRNFGSFIASGNSYRSQKDISH---QRVGISVSGVTV-----TRCGGCVAKG 52
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKE--HPLFLQCNEKFNRIYPWKRTNNKCE 118
+S N + H+ +E+ K I +E PL QC+ N +
Sbjct: 53 SLSRCPNATRSHIDSPLEERVSKQIQTFDNKRELFSPLSRQCSRGLNIKL---KACKISH 109
Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
CY SS + + ++ R YK++EY+ E +D LQ
Sbjct: 110 CYLSSSTFSSSNVEQRKANKFQVR------------------YKAEEYEFAEPNIDGLQP 151
Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------------- 223
T+ EA+L +G+L +TSPWW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 152 TDGTGEAILLEGNLLQTSPWWQQFPKRWVIVLLCFTAFLLCNMDRVNMSIAILPMSQQFN 211
Query: 224 ---------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 262
I GGIWADK GGK VLGFGV+WWS+ATVLTP+AA++GLP
Sbjct: 212 WNSATVGLIQSSFFWGYLLTQIAGGIWADKVGGKLVLGFGVVWWSIATVLTPIAAKLGLP 271
Query: 263 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 322
+LL+MRAFMGIGEGVAMPAMNN+LSKWIPVSERSRSLA VYSGMYLGSVTGL SP LIQ
Sbjct: 272 YLLVMRAFMGIGEGVAMPAMNNILSKWIPVSERSRSLALVYSGMYLGSVTGLGFSPFLIQ 331
Query: 323 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 382
KFGWPSVFYSFGSLGSIWFALWL+ AYS+PK+DP L EEKR ILGG++SKE V+VIPWK
Sbjct: 332 KFGWPSVFYSFGSLGSIWFALWLRNAYSTPKDDPNLGDEEKRLILGGNVSKEPVTVIPWK 391
Query: 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442
LILSKAPVWALI+SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN
Sbjct: 392 LILSKAPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFAN 451
Query: 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 502
+GGWIADTLVSKG SIT VRKIMQSIGFLGPAFFLTQLS+VRTPAMAVLCMACSQG DAF
Sbjct: 452 IGGWIADTLVSKGFSITTVRKIMQSIGFLGPAFFLTQLSNVRTPAMAVLCMACSQGCDAF 511
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562
SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW+DVFKV+VVLY+
Sbjct: 512 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWNDVFKVSVVLYL 571
Query: 563 IGTLVWNLFATGERVLE 579
IGTLVWN+F+TGE++L+
Sbjct: 572 IGTLVWNIFSTGEKILD 588
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576959|ref|XP_003556597.1| PREDICTED: probable anion transporter 2, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/617 (64%), Positives = 449/617 (72%), Gaps = 58/617 (9%)
Query: 1 MAIGSLISCRNFGSFVGSGKLYEKEPVIFQWKGERSGISVLRNTQGNMWNQRLRSPMANG 60
MA+G L+S RNF F+G G +Y+ + +R GIS + R +A
Sbjct: 1 MALGGLVSNRNFTCFIGPGSVYQLGKDL---SPQRGGISC-------AFVARYGGQIAKD 50
Query: 61 LISEHANRSMLHVWGNSDEKALKHIANCHTGKEH--PLFLQCNEKFNRIYPWKRTNNKCE 118
S + H +EK K I H +H PL + N + + +C+
Sbjct: 51 PFSRCWHGMCFHAKEPLNEKVSKPIPTFHDEVQHCSPLSQKSIHCMNMKL---KASRRCQ 107
Query: 119 CYFSSRHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQS 178
+ SS Q +A +G K + V YKS+E+DITEAKVD L+S
Sbjct: 108 YFLSSDPYSSSLIQQRAVYGLGLNKLGKANTARVH-------YKSEEHDITEAKVDPLES 160
Query: 179 TEIPSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR--------------- 223
TE E++L +G++ + S WW+QFPKRWV+VLLCF+AFLLCNMDR
Sbjct: 161 TEGTGESILLEGNVPQVSSWWQQFPKRWVIVLLCFAAFLLCNMDRVNMSIAILPMSQEFN 220
Query: 224 ---------------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP 262
I+GGIWADK GGK VLGFGV+WWS+ATVLTP+AARIGLP
Sbjct: 221 WNSATVGLIQSSFFWGYLLTQILGGIWADKIGGKLVLGFGVVWWSMATVLTPIAARIGLP 280
Query: 263 FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ 322
LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSV GLA SP+LIQ
Sbjct: 281 CLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVVGLAFSPLLIQ 340
Query: 323 KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWK 382
KFGWPSVFYSFGSLGSIWFALWL+KAYSSPK+DP+L EEKR IL G++S VS IPWK
Sbjct: 341 KFGWPSVFYSFGSLGSIWFALWLRKAYSSPKDDPDLGVEEKRLILEGNVSNAPVSSIPWK 400
Query: 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442
LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL ESGL CVLPWLTMA FAN
Sbjct: 401 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLMESGLLCVLPWLTMAAFAN 460
Query: 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAF 502
+GGWIADTLV KGLSIT VRKIMQSIGFLGPAFFL+QLSHVRTPAMAVLCMACSQGSDAF
Sbjct: 461 IGGWIADTLVRKGLSITVVRKIMQSIGFLGPAFFLSQLSHVRTPAMAVLCMACSQGSDAF 520
Query: 503 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562
SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG+ILQRGSW+DVFKVAV LYI
Sbjct: 521 SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGFILQRGSWNDVFKVAVALYI 580
Query: 563 IGTLVWNLFATGERVLE 579
IGTLVWN+F+TGE+VL+
Sbjct: 581 IGTLVWNVFSTGEKVLD 597
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30678625|ref|NP_567175.2| putative anion transporter 2 [Arabidopsis thaliana] gi|75244391|sp|Q8GX78.1|ANTR2_ARATH RecName: Full=Probable anion transporter 2, chloroplastic; AltName: Full=Phosphate transporter PHT4;4; Flags: Precursor gi|26451814|dbj|BAC43000.1| unknown protein [Arabidopsis thaliana] gi|32306495|gb|AAP78931.1| At4g00370 [Arabidopsis thaliana] gi|332656470|gb|AEE81870.1| putative anion transporter 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/492 (74%), Positives = 405/492 (82%), Gaps = 46/492 (9%)
Query: 124 RHSLGGWFQPKAEDRIGTRKGKSPQSLDVKEDRICAFYKSDEYDITEAKVDSLQSTEIPS 183
R S G + QP+ + I R +K +R A+YKS+E DITE V S + +
Sbjct: 60 RRSFGCFLQPRMDSVIRFRN-------SIKINRSRAYYKSEESDITEGVVPSADGS---A 109
Query: 184 EAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR-------------------- 223
EA+L +G+LQ SPWW+QFP+RWV+VLLCFS+FLLCNMDR
Sbjct: 110 EAILVEGNLQNASPWWQQFPRRWVIVLLCFSSFLLCNMDRVNMSIAILPMSQEYNWSSAT 169
Query: 224 ----------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIM 267
I+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++
Sbjct: 170 VGLIQSSFFWGYLLTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVV 229
Query: 268 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 327
RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWP
Sbjct: 230 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWP 289
Query: 328 SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSK 387
SVFYSFGSLGSIWF LWLK AYSSPK+DP+L EEK+ ILGGS +E V+VIPWKLILSK
Sbjct: 290 SVFYSFGSLGSIWFLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSK 349
Query: 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447
PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWI
Sbjct: 350 PPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWI 409
Query: 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 507
ADTLVS+GLSIT VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGL
Sbjct: 410 ADTLVSRGLSITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGL 469
Query: 508 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567
YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLV
Sbjct: 470 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLV 529
Query: 568 WNLFATGERVLE 579
WNLFATGE++L+
Sbjct: 530 WNLFATGEKILD 541
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 579 | ||||||
| TAIR|locus:2126066 | 541 | ANTR2 "AT4G00370" [Arabidopsis | 0.620 | 0.663 | 0.883 | 2.9e-206 | |
| TAIR|locus:2060694 | 512 | PHT4;1 "AT2G29650" [Arabidopsi | 0.620 | 0.701 | 0.760 | 4.8e-170 | |
| TAIR|locus:2065615 | 512 | PHT4;2 "AT2G38060" [Arabidopsi | 0.611 | 0.691 | 0.420 | 3.1e-76 | |
| TAIR|locus:2149199 | 517 | PHT4;5 "phosphate transporter | 0.607 | 0.680 | 0.392 | 5.1e-67 | |
| UNIPROTKB|Q9NRA2 | 495 | SLC17A5 "Sialin" [Homo sapiens | 0.642 | 0.751 | 0.364 | 1.5e-65 | |
| UNIPROTKB|E2R8R4 | 495 | SLC17A5 "Uncharacterized prote | 0.642 | 0.751 | 0.359 | 8.5e-65 | |
| UNIPROTKB|Q5ZL94 | 484 | SLC17A5 "Uncharacterized prote | 0.640 | 0.766 | 0.361 | 7.6e-64 | |
| TAIR|locus:2158710 | 432 | PHT4;6 "AT5G44370" [Arabidopsi | 0.633 | 0.849 | 0.352 | 1.3e-63 | |
| UNIPROTKB|E1B7R3 | 495 | SLC17A5 "Uncharacterized prote | 0.642 | 0.751 | 0.356 | 4.2e-63 | |
| RGD|1311388 | 495 | Slc17a5 "solute carrier family | 0.635 | 0.743 | 0.360 | 5.4e-63 |
| TAIR|locus:2126066 ANTR2 "AT4G00370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1710 (607.0 bits), Expect = 2.9e-206, Sum P(3) = 2.9e-206
Identities = 317/359 (88%), Positives = 341/359 (94%)
Query: 221 MDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMP 280
+ +I+GGIWADKFGGK VLGFGV+WWS AT++TP+AAR+GLPFLL++RAFMGIGEGVAMP
Sbjct: 183 LTQILGGIWADKFGGKVVLGFGVVWWSFATIMTPIAARLGLPFLLVVRAFMGIGEGVAMP 242
Query: 281 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW 340
AMNNMLSKWIPVSERSRSLA VYSGMYLGSVTGLA SP+LI KFGWPSVFYSFGSLGSIW
Sbjct: 243 AMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVFYSFGSLGSIW 302
Query: 341 FALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCH 400
F LWLK AYSSPK+DP+L EEK+ ILGGS +E V+VIPWKLILSK PVWALIISHFCH
Sbjct: 303 FLLWLKFAYSSPKDDPDLSEEEKKVILGGSKPREPVTVIPWKLILSKPPVWALIISHFCH 362
Query: 401 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITA 460
NWGTFILLTWMPTYYNQVLKFNLTESGL CVLPWLTMAVFAN+GGWIADTLVS+GLSIT
Sbjct: 363 NWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLVSRGLSITN 422
Query: 461 VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG 520
VRKIMQSIGFLGPAFFL+QLSHV+TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG
Sbjct: 423 VRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG 482
Query: 521 VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE 579
VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV LY+IGTLVWNLFATGE++L+
Sbjct: 483 VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKILD 541
|
|
| TAIR|locus:2060694 PHT4;1 "AT2G29650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1513 (537.7 bits), Expect = 4.8e-170, Sum P(2) = 4.8e-170
Identities = 273/359 (76%), Positives = 313/359 (87%)
Query: 221 MDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMP 280
+ +I GGIWAD GGK VLGFGVIWWS+AT+LTPVAA++GLP+LL++RAFMG+GEGVAMP
Sbjct: 154 LTQIAGGIWADTVGGKRVLGFGVIWWSIATILTPVAAKLGLPYLLVVRAFMGVGEGVAMP 213
Query: 281 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW 340
AMNN+LSKW+PV ERSRSLA VYSGMYLGSVTGLA SP LI +FGWPSVFYSFGSLG++W
Sbjct: 214 AMNNILSKWVPVQERSRSLALVYSGMYLGSVTGLAFSPFLIHQFGWPSVFYSFGSLGTVW 273
Query: 341 FALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCH 400
LWL KA SSP EDP L EE++ I SKE V IPW+LILSK PVWALI HFCH
Sbjct: 274 LTLWLTKAESSPLEDPTLLPEERKLIADNCASKEPVKSIPWRLILSKPPVWALISCHFCH 333
Query: 401 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITA 460
NWGTFILLTWMPTYY+QVLKFNL ESGL V PW+TMA+ AN GGWIADTLVS+G S+T
Sbjct: 334 NWGTFILLTWMPTYYHQVLKFNLMESGLLSVFPWMTMAISANAGGWIADTLVSRGFSVTN 393
Query: 461 VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG 520
VRKIMQ+IGFLGPAFFLTQL H+ +P MAVLCMACSQG+DAFSQSGLYSNHQDI PRY+G
Sbjct: 394 VRKIMQTIGFLGPAFFLTQLKHIDSPTMAVLCMACSQGTDAFSQSGLYSNHQDIAPRYSG 453
Query: 521 VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVLE 579
VLLGLSNTAGVLAGV GTAATG+ILQ GSWDDVF ++V LY++GT++WNLF+TGE++++
Sbjct: 454 VLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKIID 512
|
|
| TAIR|locus:2065615 PHT4;2 "AT2G38060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 151/359 (42%), Positives = 216/359 (60%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
++GG D++GGK VL +GV WS+AT+LTP AA LL +RAF G+ EGVAMP+M
Sbjct: 153 VIGGALVDRYGGKRVLAWGVALWSLATLLTPWAAAHSTLALLCVRAFFGLAEGVAMPSMT 212
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
+LS+W P+ ER+ ++ +G ++G+V GL ++P+++ G F F SLG +W +
Sbjct: 213 TLLSRWFPMDERASAVGISMAGFHMGNVVGLLLTPLMLSSIGISGPFILFASLGLLWVST 272
Query: 344 WLKKAYSSPKEDPELRAEEKRHILGGS-ISKEAVSVIP---WKLILSKAPVWALIISHFC 399
W ++P++ P + E R I G + +S P +L+LSK P WA+I ++
Sbjct: 273 WSSGVTNNPQDSPFITRSELRLIQAGKPVQPSTISPKPNPSLRLLLSKLPTWAIIFANVT 332
Query: 400 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSIT 459
+NWG F+LL+WMP Y+ V NL ++ F LPW TMA+ G +D L+ G S+T
Sbjct: 333 NNWGYFVLLSWMPVYFQTVFNVNLKQAAWFSALPWATMAISGYYAGAASDFLIRTGHSVT 392
Query: 460 AVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 519
+VRKIMQSIGF+GP L L+ ++P+ A + M + +FSQ+G N QDI P+YA
Sbjct: 393 SVRKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYA 452
Query: 520 GVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLFATGERV 577
G L G+SN AG LA + T TGY +Q GS+ V LY T+ W LFATGERV
Sbjct: 453 GFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511
|
|
| TAIR|locus:2149199 PHT4;5 "phosphate transporter 4;5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 142/362 (39%), Positives = 208/362 (57%)
Query: 221 MDRIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAM 279
+ ++ GG W K FGG+ VL GV WS AT L P+ A +P L+ R +GIGEGV+
Sbjct: 150 LSQLPGG-WLSKIFGGRKVLEIGVFTWSFATALVPLLAGF-MPGLIFSRILVGIGEGVSP 207
Query: 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI 339
A +++++ IPV ERSR++ FV+ G+ LGSV GL ++P +I+ F W SVFY FG LG
Sbjct: 208 SAATDLIARTIPVKERSRAVGFVFGGLSLGSVMGLLLAPPIIETFNWESVFYLFGLLGVG 267
Query: 340 WFA--LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISH 397
WF +L + S K + E+ K ++ IPWK VWA+I +H
Sbjct: 268 WFVGFQFLNEEEVSYKGN-EISTSHKSENATKEELGSSLKEIPWKSFFQSPAVWAMIYTH 326
Query: 398 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS 457
FC +WG + L+W+PTY+++ L NLTE+ +LP L V ++ AD L++ G+
Sbjct: 327 FCGSWGHYTCLSWLPTYFSEALSLNLTEAAWVSILPPLASIVVTSLASQFADYLITNGVD 386
Query: 458 ITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIG 515
T VRKI Q+I F+ PA +T S + P ++ + +F+ SGLY HQDI
Sbjct: 387 TTTVRKICQTIAFVAPAICMTLSSVDIGLPPWEIVGILTAGLALSSFALSGLYCTHQDIS 446
Query: 516 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWD-DVFKVAVVLYIIGTLVWNLFAT 573
P YA +LLG++NT G + G+ G A TG++L SW +F ++ Y+ GT+VW FA+
Sbjct: 447 PEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFAS 506
Query: 574 GE 575
E
Sbjct: 507 SE 508
|
|
| UNIPROTKB|Q9NRA2 SLC17A5 "Sialin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 140/384 (36%), Positives = 212/384 (55%)
Query: 199 WEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 258
W+ + W++ F +++ +I GG A K GGK +LGFG++ +V T+ TP+AA
Sbjct: 103 WDAETQGWILGSF-FYGYIIT---QIPGGYVASKIGGKMLLGFGILGTAVLTLFTPIAAD 158
Query: 259 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 318
+G+ L+++RA G+GEGV PAM+ M S W P ERS+ L+ Y+G LG+V L +S
Sbjct: 159 LGVGPLIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218
Query: 319 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 378
I+ W VFY FG++G WF LW+ +P++ + EK +IL S+ + S
Sbjct: 219 IICYYMNWTYVFYFFGTIGIFWFLLWIWLVSDTPQKHKRISHYEKEYILS-SLRNQLSSQ 277
Query: 379 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436
+PW IL P+WA++++HF +NW + LLT +PTY ++L+FN+ E+G LP+L
Sbjct: 278 KSVPWVPILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSSLPYLG 337
Query: 437 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 494
+ + G AD L +K S VR+I IG +GPA FL + ++AV +
Sbjct: 338 SWLCMILSGQAADNLRAKWNFSTLCVRRIFSLIGMIGPAVFLVAAGFIGCDYSLAVAFLT 397
Query: 495 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSWD 551
S F SG NH DI P YAG+LLG++NT + G+ G + G W
Sbjct: 398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTVGEWQ 457
Query: 552 DVFKVAVVLYIIGTLVWNLFATGE 575
VF +A + + G + + LFA GE
Sbjct: 458 TVFYIAAAINVFGAIFFTLFAKGE 481
|
|
| UNIPROTKB|E2R8R4 SLC17A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 138/384 (35%), Positives = 213/384 (55%)
Query: 199 WEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 258
W+ + W++ F +++ +I GG A K GGK +LGFG++ +V T+ TP+AA
Sbjct: 103 WDAETQGWILGSF-FYGYIIT---QIPGGYIASKVGGKLLLGFGILGTAVFTLFTPIAAD 158
Query: 259 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 318
G+ L+++RA G+GEGV PAM+ M S W P ERS+ L+ Y+G LG+V L +S
Sbjct: 159 FGVGALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVISLPLSG 218
Query: 319 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 378
I+ W VFY FG +G IWF LW+ +P+ + +EK +IL S+ + S
Sbjct: 219 IICFYMNWTYVFYLFGIVGIIWFILWIFLVSETPETHKTISRQEKEYILS-SLKNQLSSQ 277
Query: 379 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436
+PW +L P+WA++++HF +NW + LLT +PTY ++L+FN+ E+GL LP+
Sbjct: 278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGLLSALPYFG 337
Query: 437 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 494
+ + G AD L +K S VR++ IG +GPA FL + ++AV+ +
Sbjct: 338 CWLCMILSGQAADNLRAKWNFSTICVRRVFSLIGMIGPAVFLVAAGFIGCDYSLAVVFLT 397
Query: 495 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS---WD 551
S F SG NH DI P YAG+LLG++NT + G+ G + + W
Sbjct: 398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMVGPVIAKSLTPDNTIREWQ 457
Query: 552 DVFKVAVVLYIIGTLVWNLFATGE 575
VF +A + + G + ++LFA GE
Sbjct: 458 TVFYIAAAINVFGAIFFSLFAKGE 481
|
|
| UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 139/385 (36%), Positives = 210/385 (54%)
Query: 199 WEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 258
W+ + W++ F +++ +I GG A K GGK +LGFG+ SV T+LTP+AA
Sbjct: 92 WDADTQGWILGSF-FYGYIIT---QIPGGYLASKIGGKLLLGFGIFGTSVFTLLTPLAAD 147
Query: 259 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 318
+G+ +L+ +RA G+GEGV PAM++M S W P ERS+ L+ Y+G LG+V L +S
Sbjct: 148 LGVGYLIAVRALEGLGEGVTFPAMHSMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 207
Query: 319 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 378
++ W VFY FG+LG +WF W+ P+ + E+ +IL S K+ +S
Sbjct: 208 LICYYMNWVYVFYIFGALGVLWFFFWMWLVSDKPETHKSISRIEREYIL--SSLKDQLST 265
Query: 379 ---IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 435
+PW+ IL P+WA++++HF +NW + LLT +PTY ++L+F+ E+G LP+
Sbjct: 266 QKSVPWRPILESLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFDAQENGFLSALPYF 325
Query: 436 TMAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCM 493
+ + G IAD L K S VRK IG +GPA FL + +AV +
Sbjct: 326 GCWLCIILSGQIADHLREKQNFSTVCVRKCFTLIGMIGPAVFLVAAGFIGCNYELAVAFV 385
Query: 494 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSW 550
S F SG NH DI P YAG+LLG++N+ + G+ G + G W
Sbjct: 386 TISTTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPVIAKNLTHNNTVGEW 445
Query: 551 DDVFKVAVVLYIIGTLVWNLFATGE 575
VF +A + + G + + LFA+GE
Sbjct: 446 QTVFYIAASINLFGAIFFALFASGE 470
|
|
| TAIR|locus:2158710 PHT4;6 "AT5G44370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 136/386 (35%), Positives = 221/386 (57%)
Query: 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPFLLIM 267
+L F C+ ++ GG A K GG+ VL + WS L P+ R+GL L++
Sbjct: 51 ILSTFFVGYACS--QVPGGWAAQKIGGRKVLLLSFVLWSSTCFLVPLDPNRVGL--LVVA 106
Query: 268 RAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 327
R +G+ +G P+++ +L++W+P ERSR ++ SGMYLG+ G+ + P L++ G
Sbjct: 107 RLLVGVAQGFIFPSIHTVLAQWVPPHERSRLVSITTSGMYLGAALGMWLLPALVELRGPE 166
Query: 328 SVFYSFGSLGSIWFALWLKKAYSSPK-EDPELRAEE-KRHILGGSISKEAVSVIPWKLIL 385
SVF + G IW LW++ A P+ E P+ A +L +++ V+ IPWK I+
Sbjct: 167 SVFLAEALAGVIWSLLWIRYATDPPRSEHPKAAAAGFGGALLPTNVNHHKVTHIPWKKIM 226
Query: 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445
PVWA+++++F ++ ++L+ W+PTY+ L+ +L ++P+L M VF+ +GG
Sbjct: 227 LSLPVWAIVVNNFTFHYALYVLMNWLPTYFELGLQISLQGMDSSKMVPYLNMFVFSIVGG 286
Query: 446 WIADTLVSKG-LSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 504
+IAD L++K LS+T RK + ++GFL + L L RT +LC + + G A +
Sbjct: 287 FIADYLITKRILSVTRTRKFLNTVGFLIASAALMVLPMFRTENGVILCSSVALGFLALGR 346
Query: 505 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-----------SWDDV 553
+G NH DI PRYAG+++G+SNTAG LAG+ G TG +L+ SW V
Sbjct: 347 AGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVV 406
Query: 554 FKVAVVLYIIGTLVWNLFATGERVLE 579
F + +L I ++V+ LF+TGER+ +
Sbjct: 407 FFIPGLLCIFSSVVFLLFSTGERIFD 432
|
|
| UNIPROTKB|E1B7R3 SLC17A5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 137/384 (35%), Positives = 208/384 (54%)
Query: 199 WEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 258
W+ + W++ F +++ +I GG A + GGK +LGFGV+ +V T+ TP+AA
Sbjct: 103 WDAETQGWILGSF-FYGYIIT---QIPGGYVASRSGGKLLLGFGVLGTAVFTLFTPLAAD 158
Query: 259 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 318
G L+ +RA G+GEGV PAM+ M S W P ERS+ L+ Y+G LG+V L +S
Sbjct: 159 FGFGALVALRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLSISYAGAQLGTVVSLPLSG 218
Query: 319 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV 378
++ W VFY FG +G IWF LW+ +P+ + EK +IL S+ + S
Sbjct: 219 VICYYMNWTYVFYFFGLVGIIWFILWICLVSDTPETHKTITPYEKEYILS-SLKNQLSSQ 277
Query: 379 --IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436
+PW +L P+WA++++HF +NW + LLT +PTY +VL+FN+ E+G +P+L
Sbjct: 278 KSVPWIPMLKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEVLRFNIQENGFLSAVPYLG 337
Query: 437 MAVFANMGGWIADTLVSK-GLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAVLCMA 494
+ + G AD L ++ S VR++ IG +GPA FL + ++AV +
Sbjct: 338 CWLCMILSGQAADNLRARWNFSTLWVRRVFSLIGMIGPAIFLVAAGFIGCDYSLAVAFLT 397
Query: 495 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR---GSWD 551
S F SG NH DI P YAG+LLG++NT + G+ G + G W
Sbjct: 398 ISTTLGGFCSSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIARSLTPENTIGEWQ 457
Query: 552 DVFKVAVVLYIIGTLVWNLFATGE 575
VF +A + + G + + LFA GE
Sbjct: 458 TVFCIAAAINVFGAIFFTLFAKGE 481
|
|
| RGD|1311388 Slc17a5 "solute carrier family 17 (anion/sugar transporter), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 140/388 (36%), Positives = 211/388 (54%)
Query: 199 WEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR 258
W+ + W++ F +++ +I GG A + GGK +LG G++ +V T+ TP+AA
Sbjct: 103 WDAETQGWILGSF-FYGYIVT---QIPGGYMASRIGGKLLLGLGILGTAVFTLFTPLAAD 158
Query: 259 IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSP 318
+G+ L+++RA G+GEGV PAM+ M S W P ERS+ L Y+G LG+V L +S
Sbjct: 159 LGVVALIVLRALEGLGEGVTFPAMHAMWSSWAPPLERSKLLTISYAGAQLGTVISLPLSG 218
Query: 319 ILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVS- 377
I+ W VFY FG +G +WF LW+ +P+ + EK +I+ S+ + S
Sbjct: 219 IICYYMNWTYVFYLFGLVGIVWFILWMWIVSDTPETHKTISHYEKEYIVS-SLKNQLSSQ 277
Query: 378 -VIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP--- 433
V+PW IL P+WA++++HF +NW + LLT +PTY ++L+FN+ E+G LP
Sbjct: 278 KVVPWVSILKSLPLWAIVVAHFSYNWTFYTLLTLLPTYMKEILRFNVQENGFLSALPYFG 337
Query: 434 -WLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP-AMAV 490
WL M V G AD L V S +VR+I IG +GPA FL + ++AV
Sbjct: 338 CWLCMIVC----GQAADYLRVKWNFSTISVRRIFSLIGMVGPAVFLVAAGFIGCDYSLAV 393
Query: 491 LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS- 549
+ S F+ SG NH DI P YAG+LLG++NT + G+ G + +
Sbjct: 394 AFLTISTTLGGFASSGFSINHLDIAPSYAGILLGITNTFATIPGMIGPIIAKSLTPDNTI 453
Query: 550 --WDDVFKVAVVLYIIGTLVWNLFATGE 575
W VF +A + + G + + LFA GE
Sbjct: 454 KEWQTVFCIAAAINVFGAIFFTLFAKGE 481
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GX78 | ANTR2_ARATH | No assigned EC number | 0.7459 | 0.7702 | 0.8243 | yes | no |
| Q652N5 | PHT44_ORYSJ | No assigned EC number | 0.706 | 0.7944 | 0.7783 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 579 | |||
| TIGR00894 | 465 | TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph | 7e-66 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 5e-41 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 1e-39 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-38 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 9e-17 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 2e-16 | |
| COG2223 | 417 | COG2223, NarK, Nitrate/nitrite transporter [Inorga | 4e-13 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 3e-12 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 8e-12 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 8e-11 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 3e-09 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 1e-08 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 9e-08 | |
| COG0477 | 338 | COG0477, ProP, Permeases of the major facilitator | 1e-07 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-07 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 2e-06 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 3e-06 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-05 | |
| TIGR00886 | 366 | TIGR00886, 2A0108, nitrite extrusion protein (nitr | 8e-05 | |
| TIGR00711 | 485 | TIGR00711, efflux_EmrB, drug resistance transporte | 4e-04 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 5e-04 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 6e-04 | |
| COG2807 | 395 | COG2807, CynX, Cyanate permease [Inorganic ion tra | 6e-04 |
| >gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 7e-66
Identities = 116/364 (31%), Positives = 182/364 (50%), Gaps = 14/364 (3%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
I G A K+ K +G G+ SV +++ P AA G+ ++ R G+ +G PA +
Sbjct: 94 IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATH 153
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFA 342
++ KW P ERSR L SG LG+ L +S L + + GWP +FY FG +G W
Sbjct: 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSL 213
Query: 343 LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV---IPWKLILSKAPVWALIISHFC 399
LW P P + EK++I S+ + S +P K I PVWA+ + F
Sbjct: 214 LWFVFPADDPSIHPCISKFEKKYI-NSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFG 272
Query: 400 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG-LSI 458
H W IL T++PT+ + VL+ + E+GL LP+L + + G++AD L S LS+
Sbjct: 273 HFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL 332
Query: 459 TAVRKIMQSIGFLGP---AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 515
TA RKI IG LGP A+ L LS + +L +A + S +G+ N D+
Sbjct: 333 TAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSS--GPLAGVLINSLDLA 390
Query: 516 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL---YIIGTLVWNLFA 572
PR+ G + G++ G + G+ + G IL + S + V +++ I+ + + +F
Sbjct: 391 PRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450
Query: 573 TGER 576
+ ER
Sbjct: 451 SAER 454
|
[Transport and binding proteins, Anions]. Length = 465 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 5e-41
Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 24/334 (7%)
Query: 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL 265
++ L + + G +D+FG + VL G++ +++ +L A+ L LL
Sbjct: 36 LLLTAFSLGYALA----QPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFAS--SLWLLL 89
Query: 266 IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG 325
++R G+G G PA +++ W P ER R+L + +G LG+ G + +L FG
Sbjct: 90 VLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFG 149
Query: 326 WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLIL 385
W + F L + L P E + E+ ++P +L
Sbjct: 150 WRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAP----------APLVPAWKLL 199
Query: 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445
+ PV L+++ + F LLT++P Y +VL + +GL L L A+ + G
Sbjct: 200 LRDPVLWLLLALLLFGFAFFALLTYLPL-YQEVLGLSALLAGLLLGLAGLLGAIGRLLLG 258
Query: 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQS 505
++D L + R ++ + + A L LS + ++ +
Sbjct: 259 RLSDRLGRR------RRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFP 312
Query: 506 GLYSNHQD-IGPRYAGVLLGLSNTAGVLAGVFGT 538
L + D G GL NTAG L G G
Sbjct: 313 ALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-39
Identities = 99/368 (26%), Positives = 152/368 (41%), Gaps = 21/368 (5%)
Query: 213 FSAF----LLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 268
FSAF ++ GG D+FG + L ++ W V T L A L I+R
Sbjct: 35 FSAFSWGYVVGQ---FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILR 89
Query: 269 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPS 328
+G E P + +++ W P SER+ +++ S LG + G + ++ F W
Sbjct: 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149
Query: 329 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPW------- 381
F G LG IW LWL K P + + EE+++I+ G + E P
Sbjct: 150 AFIIEGVLGIIWGVLWL-KFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQI 208
Query: 382 KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFA 441
K +L VW L + F N G LTW PTY Q ++ E+G LP + +
Sbjct: 209 KELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM 268
Query: 442 NMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDA 501
+GG ++D L+ +G S+ + I L L ++ A L +
Sbjct: 269 ILGGRLSDLLLRRGKSLV-FARKTAIIAGLV-LSLLMFATNYVNIPYAALALVALGFFGL 326
Query: 502 FSQSGLYSNHQDIGPRY-AGVLLGLSNTAGVLAGVFGTAATGYIL-QRGSWDDVFKVAVV 559
+ + ++ D P AG+ GL N+ G L G+ G G I GS+ V
Sbjct: 327 GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAA 386
Query: 560 LYIIGTLV 567
L +IG L
Sbjct: 387 LALIGALS 394
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-38
Identities = 89/364 (24%), Positives = 151/364 (41%), Gaps = 51/364 (14%)
Query: 211 LCFSAFLLCNM-DRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 269
L SAF L ++ G +D+FG + VL G++ +++ ++L A+ L LL+ R
Sbjct: 38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRF 95
Query: 270 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV 329
+G+G G PA ++++W P ER R+L +G LG++ G + +L + GW +
Sbjct: 96 LLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWL 155
Query: 330 FYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP 389
F LG + L L
Sbjct: 156 FLILAILGLLLALLLL---------------------------------------FLLRL 176
Query: 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 449
+ L ++ F ++G + LLT++P Y +VL + E+GL L L + A +GG ++D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 450 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509
L R+++ IG L A L L+ + A+ ++ + F+ L +
Sbjct: 237 RLGR--------RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288
Query: 510 -NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW 568
+ P G GL NT G L G G G +L G + VF + L ++ L+
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348
Query: 569 NLFA 572
L
Sbjct: 349 LLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 9e-17
Identities = 80/345 (23%), Positives = 142/345 (41%), Gaps = 39/345 (11%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
+ G AD+ G + VL + ++ +SV T+L +A + LLI+R G+G G MP +N
Sbjct: 70 LFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLN 127
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
++S++ P R ++ ++ G +G+ G ++ LI FGW S+FY G + + L
Sbjct: 128 ALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY-VGGIAPLLLLL 186
Query: 344 WLKKAYSSP-----------------KEDPELRAEEKRHILGGSISKEAVSVIPWKLILS 386
L + P+++AE + L + + +K +
Sbjct: 187 LLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSA-LPEQKATQGTKRSVFKALFQ 245
Query: 387 KAPVWA---LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443
L + +F G + L W+P + L F+L+ + L + + +
Sbjct: 246 GKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAATGGALFNFGGVIGSII 304
Query: 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS 503
GW+AD L ++ + LG F + S + +P + +L A +
Sbjct: 305 FGWLADRL---------GPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGG 355
Query: 504 QSGLYSNHQDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYIL 545
QSGLY+ P R GV + G L + G GY+L
Sbjct: 356 QSGLYALMALFYPTAIRATGVGWAIG--IGRLGAIIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 67/360 (18%), Positives = 132/360 (36%), Gaps = 29/360 (8%)
Query: 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMR 268
+L FS + + + V G +D+ + L G+I ++ + L + +
Sbjct: 35 LLSSFS--IAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF--FGFSTSLWVMAALW 90
Query: 269 AFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI----QKF 324
A GI +G+ P ++KW SER ++F +G G + P+++ + +
Sbjct: 91 ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVG---GGLLPPLVLFGIAELY 147
Query: 325 GWPSVFYSFGSLGSIWFALWLKKAYSSPK-----EDPELRAEEKRH---ILGGSISKEAV 376
W VF G + I + SP+ E+ EE ++K+ +
Sbjct: 148 SWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQI 207
Query: 377 SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436
+ ++L+K +W + + + +L W P Y Q F+ ++ L L
Sbjct: 208 FL--QYVLLNKV-LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELG 264
Query: 437 MAVFANMGGWIADTLV-SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC 495
V + GW++D L + + + + L ++L + P M ++C+
Sbjct: 265 GLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLV--YWLNPAA---NPLMDLICLFA 319
Query: 496 SQGSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVF 554
Q + ++ P + AG G L G+ GY+ W F
Sbjct: 320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 75/361 (20%), Positives = 137/361 (37%), Gaps = 35/361 (9%)
Query: 223 RIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEG---VA 278
R+ G D+FGG+ ++ + + A LL++ +G+ V
Sbjct: 66 RLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG 125
Query: 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGS 338
MP S + P ++ +L +G +V L V+P++ FG+ + G
Sbjct: 126 MP----NASFFFPKEKQGLALGIAGAGNLGVAVAQL-VAPLVAVAFGFLAWRNVAGIYV- 179
Query: 339 IWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHF 398
+ A+ A+ + PE RA S + K + S W L + +F
Sbjct: 180 VALAIAAVLAWLGMNDVPEHRA-----------SVKPQLPAQLKAVFSNKDTWLLSLLYF 228
Query: 399 CHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS 457
+G F+ + ++P Y + +GL L L A+ +GGW++D + G
Sbjct: 229 A-TFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI--GGRR 285
Query: 458 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM----ACSQGSDAFSQSGLYSNHQD 513
+T + ++ + FLT H + + V + + ++
Sbjct: 286 VTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG----SVFKMIPV 341
Query: 514 IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYII-GTLVWNLF 571
I P+ G + G+ G L G F A G L GS+ F + + Y++ L W L+
Sbjct: 342 IFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401
Query: 572 A 572
A
Sbjct: 402 A 402
|
Length = 417 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-12
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
+ G+ D+FG KPVL G+ + ++T + +++ I + L+I R G G A+ A
Sbjct: 16 PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV--LIIARFLQGFGAAFALVAGA 73
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
+++ P ER +L + +G+ LG + G + +L Q GW + F L F L
Sbjct: 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133
|
Length = 141 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 8e-12
Identities = 73/380 (19%), Positives = 123/380 (32%), Gaps = 46/380 (12%)
Query: 225 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL-PFLLIMRAFM---GIGEGVAMP 280
V G+ +D+ + + FG+I ++ +L G P L + G +G+ P
Sbjct: 83 VMGVLSDRSNPRYFMAFGLILSAIVNIL------FGFSPSLFLFAVLWVLNGWFQGMGWP 136
Query: 281 AMNNMLSKWIPVSERSRSLAFV-----YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGS 335
++ W ER + G V LA GW + FY F
Sbjct: 137 PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLA---FFAFHGGWRAAFY-FPG 192
Query: 336 LGSIWFALWLKKAYS-SPKE----DPELRAEEKRHILGGSISKEAVSV--IPWKLILSKA 388
+ +I AL L P+ E + I E ++ I K +L
Sbjct: 193 IIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK 252
Query: 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM--GGW 446
+W L +++ + + W P Y ++V F+L ++ + +A GW
Sbjct: 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW--AISLFEVAGLPGTLLAGW 310
Query: 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT--PAMAVLCMACSQGSDAFSQ 504
++D + KG R M I L L + + + G +
Sbjct: 311 LSD-KLFKGR-----RGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII-GFLIYGP 363
Query: 505 ---SGLYSNHQDIGPRYA-GVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKVAVV 559
GL + + P+ A G G L G GYI WD F V +
Sbjct: 364 QMLIGLAAA--EFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSI 421
Query: 560 LYIIGTLVWNLFATGERVLE 579
++ L+ E
Sbjct: 422 AALLAILLLLPVWNAEERKI 441
|
Length = 448 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 8e-11
Identities = 84/331 (25%), Positives = 142/331 (42%), Gaps = 35/331 (10%)
Query: 227 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGVAMPAMNNM 285
G+ ADKFG KP++ + ++ +SV T L+ +A+ G+ L + R +G+G G A
Sbjct: 74 GLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYA 131
Query: 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWL 345
+ W P +S++ AF+ SG +G++ P + +GW + F F L + +++
Sbjct: 132 VESW-PKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAF--FVGLLPVLLVIYI 188
Query: 346 KKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP------VWALIISHFC 399
+ KE E + K S S +V + K + ++A V+ ++ S F
Sbjct: 189 RARAPESKEWEEAKLSGKGK---HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFG 245
Query: 400 HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLS 457
NW F LL PTY L ++G+ L +T A F + G I L + GL
Sbjct: 246 ANWPIFGLL---PTY----LAGEGFDTGVVSNL--MTAAAFGTVLGNIVWGLCADRIGLK 296
Query: 458 ITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR 517
T ++ S F+ P F + Q +++ A MA + G LY D P
Sbjct: 297 KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLY----DYFPL 352
Query: 518 Y-----AGVLLGLSNTAGVLAGVFGTAATGY 543
G++ L+ T+G + T
Sbjct: 353 EVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383
|
Length = 426 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 75/354 (21%), Positives = 118/354 (33%), Gaps = 44/354 (12%)
Query: 221 MDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMP 280
M VGG+ ADKFG + V G I + + +A L L + G G+A
Sbjct: 53 MSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--SLAALYLTYGLASAGVGIAYG 110
Query: 281 AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI---LIQKFGWPSVFYSFG--- 334
N KW P +R + + G LGS +SP+ +I G P+ F G
Sbjct: 111 IALNTAVKWFP-DKRGLASGIIIGGYGLGS---FILSPLITSVINLEGVPAAFIYMGIIF 166
Query: 335 ----SLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPV 390
LG+ + +S + +V +L
Sbjct: 167 LLVIVLGAFLIG----------------YPPGQLIKTNIEVSVKDYTVWE---MLRTPQF 207
Query: 391 WALIISHFCHN-WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 449
W L +S F + G ++ + P Y Q L S F VL ++++ N GG
Sbjct: 208 WVLYLSFFLNAVSGLLLIGLYKP--YGQSLGL----SDGFLVLA-VSISSIFNGGGRPFL 260
Query: 450 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509
+S + I+ I +G A L +A + + S
Sbjct: 261 GALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLF-PSL 319
Query: 510 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII 563
GP + G TA +AG+FG + L ++ F V +
Sbjct: 320 VSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 70/353 (19%), Positives = 133/353 (37%), Gaps = 34/353 (9%)
Query: 227 GIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286
+ + + +L + + V+ +L+ +A LL+ RA G+ GV +
Sbjct: 69 ALLTGRLERRRLLLGLLALFIVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALA 126
Query: 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI---WFAL 343
++ +P +R R+LA V++G+ L +V G+ + L Q FGW + F + L +
Sbjct: 127 ARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK 186
Query: 344 WLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG 403
L + S LR +L+ + L+ + F G
Sbjct: 187 LLPPSEISGSLPGPLRTL-------------------LRLLRRPGVLLGLLAT-FLFMTG 226
Query: 404 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463
F L T++ + V F+++ L + + + +GG +AD A+
Sbjct: 227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGP-----RRALIA 281
Query: 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 523
+ + A T S PA+A+ + + + + GL + + P A +
Sbjct: 282 ALLLLALALLALTFTGAS----PALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAG 337
Query: 524 GLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGER 576
L+ A L G A G +L + V L ++ L+ L A +R
Sbjct: 338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR 390
|
Length = 394 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 30/198 (15%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
++GG AD+ G K +L V + + ++ T A P LL+ R G+G G A+P +
Sbjct: 68 LLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD--FPSLLVARLLTGVGLGGALPNLI 125
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI---- 339
+ S+ + R +++ +Y G+ G + + W +FY G +G +
Sbjct: 126 ALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFY-VGGVGPLLLVP 184
Query: 340 WFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLI-----LSKAPVWALI 394
WL E R + + + + + L + +W
Sbjct: 185 LLMRWLP---------------ESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLW--- 226
Query: 395 ISHFCHNWGTFILLTWMP 412
IS+F + LL W+P
Sbjct: 227 ISYFFTLIVLYFLLNWLP 244
|
Length = 406 |
| >gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (127), Expect = 1e-07
Identities = 59/299 (19%), Positives = 112/299 (37%), Gaps = 16/299 (5%)
Query: 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL 265
+ LL + FL + ++ G D++G + VL G++ + + T+L +A +GL LL
Sbjct: 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLL 98
Query: 266 IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS--GMYLGSVTGLAVSPILIQK 323
I+R G+G G +P + +LS+W P + + + LG G ++ +L+
Sbjct: 99 ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158
Query: 324 F--GWPSVFYSFGSLGSIWFALWLK------------KAYSSPKEDPELRAEEKRHILGG 369
GW + F LG + L L + E +L +LGG
Sbjct: 159 LLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLGG 218
Query: 370 SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429
+ + +A + L ++ G ILL +P +
Sbjct: 219 LVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAG 278
Query: 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM 488
+L + + + +G + +L+ L + + + G L A L L +
Sbjct: 279 GLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLLLALVLTI 337
|
Length = 338 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 65/309 (21%), Positives = 118/309 (38%), Gaps = 42/309 (13%)
Query: 210 LLCFSAFLLCNMDRIVGGI----WADKFGGKPVLGFGVIWWSVATV---LTPVAARIGL- 261
L F+ F + R +G I + D+ G K L ++ + T+ L P A IG+
Sbjct: 35 LATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIW 94
Query: 262 -PFLL-IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYS----GMYLGSVTGLA 315
P LL + R G G L+++ P +R +F G+ L ++T L
Sbjct: 95 APILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154
Query: 316 VSPIL----IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSI 371
+S +L + ++GW F L I L+L++ + +E P +++H
Sbjct: 155 LSYLLGDDALLEWGWRIPFLVSAVLVLI--GLYLRR---NLEETPVFEKAQEKHKKKR-- 207
Query: 372 SKEAVSVIPWKLILSK--APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429
P L+K P + +++ T++PTY Q L + + L
Sbjct: 208 -------GPIAETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLV 260
Query: 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA 489
+L + + + G ++D + + + I I + L L L + +
Sbjct: 261 LMLSLILFFITIPLSGALSDRIGRRPVLI-----IFTVLAALLAVPLLMALLDSGSFTLF 315
Query: 490 ---VLCMAC 495
VL MA
Sbjct: 316 FFLVLGMAL 324
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 8/179 (4%)
Query: 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 452
L ++ F G +L +P Y + L + TE GL L A+ + G ++D
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 453 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ 512
+ + + + ++ ++G L F + + VL + G A +
Sbjct: 61 RRRVLLIGL--LLFALGLLLLLFASS------LWLLLVLRVLQGLGGGALFPAAAALIAD 112
Query: 513 DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571
P G LGL + L G G + W F + +L ++ ++ L
Sbjct: 113 WFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL 171
|
Length = 346 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 41/193 (21%), Positives = 83/193 (43%), Gaps = 9/193 (4%)
Query: 213 FSAFL-LCNMDRIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAF 270
FSA+ L + I+GG AD+ G + + G I ++ ++ +++ G L I A
Sbjct: 67 FSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLAL 126
Query: 271 MGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV--YSGMYLGSVTGLAVSPILIQKFGWPS 328
+ +G G+ P ++++L + P + R F Y G+ +GS+ ++ +L +GW
Sbjct: 127 IIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHV 186
Query: 329 VF--YSFGSLGSIWFALWLKKAY---SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKL 383
F + G + + L ++ + L +LGG + +++ L
Sbjct: 187 GFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLL 246
Query: 384 ILSKAPVWALIIS 396
+ L+IS
Sbjct: 247 NQNTFSGVLLVIS 259
|
Length = 498 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIG-EGVAMPAM 282
++G + D++G + + ++ +SV T+ A G L I R +G+G G +
Sbjct: 74 LLGAM-GDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSA 130
Query: 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA 342
++ W P R+++ F+ SG +G+V V +++ +GW ++F F + I FA
Sbjct: 131 TYVIESW-PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALF--FIGILPIIFA 187
Query: 343 LWLKKA 348
LWL+K
Sbjct: 188 LWLRKN 193
|
Length = 496 |
| >gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 63/330 (19%), Positives = 115/330 (34%), Gaps = 35/330 (10%)
Query: 223 RIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF--LLIMRAFMGIGEGVAMP 280
RI+ G DKFG + ++ ++ + +A + LL++R F+GI G
Sbjct: 54 RIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA---VQSYSVLLLLRLFIGIAGGSFAS 110
Query: 281 AMNNMLSKWIPVSERSRSLAFVYSGMYLG-SVTGLAVSPI-----------LIQKFGWPS 328
M +S + P + +L +G V + PI +GW
Sbjct: 111 CM-PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAF 169
Query: 329 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKA 388
V G L ++ A + P + + G S ++ +
Sbjct: 170 VIVPAGILLLPALLIFFVGADTPPGKPATGKLS----FKGARWSVGTGALGDQLKVFRDR 225
Query: 389 PVWALIISHFCHNWGTFILLTWM-PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447
W L + + +G+F+ ++ + ++ + +G + L L ++ +GG I
Sbjct: 226 HTWILALLYSV-TFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAI 284
Query: 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 507
+D L G + + ++G L S + VL +A FS +G
Sbjct: 285 SDRL--GGARKLLMSFLGVAMGAFLVVLGLV--SPLSLAVFIVLFVALF----FFSGAGN 336
Query: 508 YSNHQ---DIGPRYAGVLLGLSNTAGVLAG 534
S I R G + GL G L G
Sbjct: 337 GSTFALVPHIFRRATGAVSGLVGAIGNLGG 366
|
[Transport and binding proteins, Anions]. Length = 366 |
| >gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 230 ADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289
A +FG + + +++ ++L VA + L ++I R G G G +P + L
Sbjct: 61 AKRFGTRRLFLISTFAFTLGSLLCGVAPNLEL--MIIFRVIQGFGGGPLIPLSFSTLLNI 118
Query: 290 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFY 331
P +R R++A + + G + +I+ + W +F
Sbjct: 119 YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFL 160
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 37/113 (32%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 225 VGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEG-VAMPAMN 283
+ G + DK+G + V+ FG I + VL A LP L GIG G V +
Sbjct: 57 IEGWFVDKYGPRIVVMFGGIMCGLGWVLNAYAD--SLPALYAAAVVAGIGAGAVYGTCVG 114
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI--LIQKFGWPSVFYSFG 334
N L KW P R LA + G+ L V PI +I+ G+ + F FG
Sbjct: 115 NAL-KWFP---DKRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFMYFG 163
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 211 LCFSAFLL-CNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 269
L S F + C + + G D+FG K L G + + + +L A L++ R
Sbjct: 50 LIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRV 109
Query: 270 FMGIGEGVA 278
+G+G G
Sbjct: 110 IVGLGVGGI 118
|
Length = 449 |
| >gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 74/369 (20%), Positives = 135/369 (36%), Gaps = 52/369 (14%)
Query: 210 LLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRA 269
LL F F A +FG + L ++ + ++ + GLP L +
Sbjct: 57 LLAFGLFAP------AAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTL 107
Query: 270 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS---PILIQKFGW 326
G G V + +++ + P +R + +YS LG+ LA + P+ GW
Sbjct: 108 LAGAGIAVINVLLPSLIKRDFP--KRVGLMTGLYS-TSLGAGAALAAALAVPLAQHSGGW 164
Query: 327 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILS 386
+ L + +WL P+ E+ I +S V W+ L
Sbjct: 165 RGALGFWALLALLALLIWL----------PQALREQAASIATKLVSVRKV----WRSPL- 209
Query: 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA--VFANMG 444
W + + + +I++ W+P + E+G +L + +A A +
Sbjct: 210 ---AWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGS--LLSLMQLAQLPTALLI 263
Query: 445 GWIADTLVS-KGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS 503
+A + + L + A+ ++ +G +G QL P + L + QG AF
Sbjct: 264 PLLARRSKNQRPLVVLAL--LLMLVGLVGLLLAPGQL-----PILWALLLGLGQGG-AFP 315
Query: 504 QSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYI 562
+ + A L G++ G L FG G++ GSW +VL
Sbjct: 316 LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW----SAPLVLLA 371
Query: 563 IGTLVWNLF 571
+ TL+ +F
Sbjct: 372 LATLLMLIF 380
|
Length = 395 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.98 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.96 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.94 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.91 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.91 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.9 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.9 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.89 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.87 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.84 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.84 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.84 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.84 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.84 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.83 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.82 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.82 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.82 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.82 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.81 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.79 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.78 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.78 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.78 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.78 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.66 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.62 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.58 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.54 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.5 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.48 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.44 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.37 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.32 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.31 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.3 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.3 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.29 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.28 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.27 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.27 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.26 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.26 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.26 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.25 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.24 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.23 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.23 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.23 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.23 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.21 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.2 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.2 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.2 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.19 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.19 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.18 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.18 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.18 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.18 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.17 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.17 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.17 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.16 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.15 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.14 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.14 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.13 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.13 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.13 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.12 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.11 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.1 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.1 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.09 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.09 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.08 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.08 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.08 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 99.08 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.08 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.08 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.07 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.07 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.07 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.05 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.05 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.04 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.03 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.02 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.02 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.02 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.01 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.01 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.98 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.96 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.92 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.91 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.87 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.83 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.82 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.82 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.81 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.78 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.78 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.77 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.77 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.76 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.75 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.73 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.73 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.72 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.71 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.7 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.69 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.65 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.63 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.63 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.59 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.59 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.58 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.56 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.53 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.49 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.49 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.46 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.44 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.44 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.4 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.4 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.4 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.4 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.36 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.35 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.35 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.32 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.29 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.24 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.22 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.21 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.18 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.16 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.16 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.15 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.13 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.07 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.02 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.99 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.94 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.88 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.85 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.84 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.73 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.73 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.67 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.63 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.61 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.42 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.42 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.4 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.36 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.35 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 97.29 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.12 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.98 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.92 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.81 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.58 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.58 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 96.54 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.2 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 96.15 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 95.3 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.3 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.22 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.88 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.15 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.13 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 94.02 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 93.82 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.82 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 93.56 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.11 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 93.04 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 93.0 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.09 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 90.43 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 90.37 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 89.01 | |
| PF06912 | 209 | DUF1275: Protein of unknown function (DUF1275); In | 87.7 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 82.87 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 81.76 | |
| PF07857 | 254 | DUF1632: CEO family (DUF1632); InterPro: IPR012435 | 81.62 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 80.96 |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=294.22 Aligned_cols=367 Identities=39% Similarity=0.720 Sum_probs=322.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
..++.+..+.+..+++++.|+++||+|.|+++..+.++.++++++.+++...+++.+++.|+++|++.|..+|+...+.+
T Consensus 75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~ 154 (466)
T KOG2532|consen 75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILA 154 (466)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceee
Confidence 36777888899999999999999999999999999999999999999998777788899999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~-~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
+|.|++||++..++...+..+|.+++-+++|++.+. +||+++|++.++++++..++++.+..|+|.+.+...++|.+.+
T Consensus 155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I 234 (466)
T KOG2532|consen 155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYI 234 (466)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999988877777777766
Q ss_pred hcCCcccccc--cchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAV--SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 367 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
..+..+.... ...|++++++++.+|.+.+..++..++.+.+..|+|.|+++++|++..+.|++.++..+...+..++.
T Consensus 235 ~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~ 314 (466)
T KOG2532|consen 235 EKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVA 314 (466)
T ss_pred HhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 6554443333 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
|.++||+.+|.+.....+.+.-.++..+.++.+......+ ..+..++++.+..+..+...........+..|++.+..
T Consensus 315 g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l 394 (466)
T KOG2532|consen 315 GQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFV 394 (466)
T ss_pred HHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHH
Confidence 9999999876555555667777888887777776665544 33455666666666666777777776666689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQR---GSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~---~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+|+.+.+..++++++|.+.|.+... ..|+.+|++.+++.+++.+++.++.+.
T Consensus 395 ~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~s~ 449 (466)
T KOG2532|consen 395 MGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFGSG 449 (466)
T ss_pred HHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEeecC
Confidence 9999999999999999999999943 479999999999999999888777543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=275.55 Aligned_cols=341 Identities=21% Similarity=0.252 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
.+.+.+...++..++.|+...+.||+.||++++..+.++.++.+++++++ ||+.+++.|++.|+..|.+++...++..
T Consensus 50 aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp--~f~~Ll~aR~~~g~a~G~f~~i~~~~a~ 127 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP--SFAVLLLARALAGLAHGVFWSIAAALAA 127 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777888889999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhc-CCCCCChhhcHHHHhhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY-SSPKEDPELRAEEKRHI 366 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 366 (579)
++.|+++|++++++...+..++.++|.+++.++.+.+|||++|++.+.++++.++..+...| ...++.+....
T Consensus 128 ~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~------ 201 (394)
T COG2814 128 RLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPL------ 201 (394)
T ss_pred HHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcch------
Confidence 99999999999999999999999999999999999999999999999999999988888888 21111111111
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
.....++++|.++...+..++...+.+..++|+..++++..|++....++++..+++++++|++++|+
T Consensus 202 ------------~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr 269 (394)
T COG2814 202 ------------RTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269 (394)
T ss_pred ------------hHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 11234789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS 526 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 526 (579)
+.|| +.++.+.. ...+.......+.. .....+.......+.++..............+..|+.++.+.+++
T Consensus 270 l~dr-~~~~~l~~-------~~~l~a~~~l~l~~-~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~ 340 (394)
T COG2814 270 LADR-GPRRALIA-------ALLLLALALLALTF-TGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLN 340 (394)
T ss_pred hccc-cchhHHHH-------HHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHH
Confidence 9999 66643221 11222222222222 223334444444433333333344444434446679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 008070 527 NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV 577 (579)
Q Consensus 527 ~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 577 (579)
....++|..+|..++|.++|++|+....++.+++.+++.++.+...+.+|+
T Consensus 341 ~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 341 VAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999998888777665443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=274.97 Aligned_cols=360 Identities=17% Similarity=0.226 Sum_probs=282.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
-++++.++.++.+.++..+.|.++||.+.|..+.+++++.++..+++++++ +.+.+.++.++.|+.+|..+|++...+
T Consensus 65 ~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~i 142 (448)
T COG2271 65 QLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCARTI 142 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 344555555566666669999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHH--HHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVS--PILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~--~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
++|++++|||+..++++...++|..+.|++. +++..+.+||..|++.++++++..++.++..+++|++..-.+.++..
T Consensus 143 ~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~ 222 (448)
T COG2271 143 THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYR 222 (448)
T ss_pred HHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhh
Confidence 9999999999999999999999999999999 89988899999999999999999999999999998764433222221
Q ss_pred hhhcC--Ccccc----cccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHH
Q 008070 365 HILGG--SISKE----AVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 438 (579)
Q Consensus 365 ~~~~~--~~~~~----~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ 438 (579)
....+ .++++ .....-++.+++||.+|.+++..++.+..-+++..|.|.|+.|..|++...+++..+.+-.+++
T Consensus 223 ~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl 302 (448)
T COG2271 223 GDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL 302 (448)
T ss_pred cCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 11100 11111 1122456778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhh--ccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccC
Q 008070 439 VFANMGGWIADTLV--SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIG 515 (579)
Q Consensus 439 ig~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (579)
+|.++.|+++||+- ||...- ++..+++. ..+.........+.++. +.++.+++...+.....-....+..|
T Consensus 303 ~G~Ll~GwlSDklfkgrR~p~~-----~i~~~~i~-~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~p 376 (448)
T COG2271 303 PGTLLAGWLSDKLFKGRRGPMA-----LIFMLLIT-ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVP 376 (448)
T ss_pred HHHHHHHHHHHHhcccccchHH-----HHHHHHHH-HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc
Confidence 99999999999974 443221 11122222 22222222222333333 33333444433333333334555567
Q ss_pred CCchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 516 PRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 516 ~~~~g~~~g~~~~~~~l-g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
++..|++.|+...+.++ |.+.+....|++.|..||...|++..+.++++.++++.+.+.
T Consensus 377 K~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 377 KKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred HhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999 999999999999999999999999988888888777766543
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=285.44 Aligned_cols=366 Identities=16% Similarity=0.144 Sum_probs=263.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+...+...+++++.|++.||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.|...+...++
T Consensus 58 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~g~~~~~~~~~ 135 (434)
T PRK11663 58 SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--SLWAFALLWVLNAFFQGWGWPVCAKL 135 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHccchHHHHH
Confidence 3456666777778888889999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH---HH
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA---EE 362 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~---~~ 362 (579)
+.+++|+++|+++++++..+.++|.++++++++++.+.+|||+.|++.+++.++..++..+..+++|+....... ++
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 215 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH 215 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc
Confidence 999999999999999999999999999999999999999999999998887766655555555555432110000 00
Q ss_pred HhhhhcCCcccccccchh-H-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHH
Q 008070 363 KRHILGGSISKEAVSVIP-W-KLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 440 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig 440 (579)
...........+...... + ...++++.+|.+.+..++.......+..|+|.|+.+.+|++..+++...+...++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g 295 (434)
T PRK11663 216 DALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIG 295 (434)
T ss_pred cccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 000000000000001111 1 22567888998888888777778888889999998778999999999999999999999
Q ss_pred HHHHHHHhhhhh--ccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 441 ANMGGWIADTLV--SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 441 ~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
+++.|++.||+. +|+... ....++.......+......+........+.++.+.............+..+++.
T Consensus 296 ~~~~g~l~dr~~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 370 (434)
T PRK11663 296 ALVAGWGSDKLFNGNRGPMN-----LIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA 370 (434)
T ss_pred HHHHhhhHHHhccCCccHHH-----HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh
Confidence 999999999983 233221 1111111111111111112222222222222222211111111222344456789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCcccC
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 578 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 578 (579)
+|++.|+.++..++|.+++|.+.|++.|+.||..+|.+.+++.+++.+..+...++++..
T Consensus 371 ~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 371 AGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 999999999999999999999999999999999999999999888877776666555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=277.47 Aligned_cols=339 Identities=15% Similarity=0.120 Sum_probs=260.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+...+...+.+++.|++.||+|||+++..+.++.+++.+++++++ +++.+++.|+++|++.+...+...++
T Consensus 44 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~~~G~~~~~~~~~~~~~ 121 (390)
T PRK03545 44 AQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW--NFTVLLISRIGIAFAHAIFWSITASL 121 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777788889999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.+++|+++|+++++++..+.++|.+++|++++.+.+.+|||+.|++.+++.++..++.+...|+.+++++.
T Consensus 122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~-------- 193 (390)
T PRK03545 122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG-------- 193 (390)
T ss_pred HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc--------
Confidence 999999999999999999999999999999999999999999999999988877666655555543322110
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
.....++++++|.++...+..++.....+....+++.|+.+.+|++..+.+.+.....++.++++++.+
T Consensus 194 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g 262 (390)
T PRK03545 194 -----------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFS 262 (390)
T ss_pred -----------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 011245678888888776666666666666777888888887899999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
++.||+++|.... ...+.............+.+...+.....+.+. ....+.......+..|+.+++++|+
T Consensus 263 ~l~dr~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ 333 (390)
T PRK03545 263 RLGNRHPSGFLLI--------AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAPDATDVAMAL 333 (390)
T ss_pred HHhhccchhHHHH--------HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-hcchHHHHHHHHHhCCCcHHHHHHH
Confidence 9999998764211 111111111111111122222222222333332 2222223333334567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
++....+|..+||.+.|.+.|+.|++..|.+.+++.+++.++.....++
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999998888777666553
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=277.05 Aligned_cols=362 Identities=26% Similarity=0.392 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.....+...++.++.|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+....+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 106 (399)
T TIGR00893 29 AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILI 106 (399)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456777788888889999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|++|+++|++++++......+|.++++.+++.+.+..+||+.|++.+++.++..++.++..++++++.+...++++..
T Consensus 107 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (399)
T TIGR00893 107 VASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI 186 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999888887777666666666554332222211111
Q ss_pred hhcC------CcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHH
Q 008070 366 ILGG------SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439 (579)
Q Consensus 366 ~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~i 439 (579)
..+. ..++++......++.+++|.++...+..++.......+..+.|.|+.+.+|.++.+.+++.....++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (399)
T TIGR00893 187 VVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFI 266 (399)
T ss_pred cchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHH
Confidence 1000 1111122334567788999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCch
Q 008070 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 519 (579)
Q Consensus 440 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (579)
+.++.|++.||+++|+....... .....+.+...+...........+.......++.+.....+.......+..|++++
T Consensus 267 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (399)
T TIGR00893 267 GMILGGRLSDLLLRRGKSLVFAR-KTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIA 345 (399)
T ss_pred HHHHHHHHHHHHhhcccchhHHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHH
Confidence 99999999999999862221111 11111111111211112212233333333333333333334444445566788999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHH
Q 008070 520 GVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 520 g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~~~~~ 570 (579)
|+++|+.+.+..+|..++|.+.|.+.+..| |...+.+.+++.+++.++.+.
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 999999988888777766544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=282.16 Aligned_cols=370 Identities=29% Similarity=0.493 Sum_probs=278.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 204 KRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 204 ~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
.....+++.+..+++..+++++.|+++||+|+|+++.++.++++++.+++.++...+++.+++.|+++|++.+...+...
T Consensus 74 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~ 153 (465)
T TIGR00894 74 SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATH 153 (465)
T ss_pred CHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHH
Confidence 34557788888889999999999999999999999999999999998887665322678899999999999999999999
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~-~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
.++.+|+|+++|++++++...+..+|.++++++++.+.+. .+||+.|++.+++.++..++++...+++|+..++..+++
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 233 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFE 233 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHH
Confidence 9999999999999999999999999999999999999988 499999999999888877777777777665433322222
Q ss_pred HhhhhcC--CcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHH
Q 008070 363 KRHILGG--SISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 440 (579)
Q Consensus 363 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig 440 (579)
++...+. ....+.....+++++++++.+|...+..++.....+.+.+|+|.|+.+.+|++..+.+++.++..++.+++
T Consensus 234 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~ 313 (465)
T TIGR00894 234 KKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLC 313 (465)
T ss_pred HHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHH
Confidence 2211111 01111112346888999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHhhhhhccCcchHH-HHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 441 ANMGGWIADTLVSKGLSITA-VRKIMQSIGFLGPAFFLTQLSH-VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 441 ~~~~g~l~dr~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
.++.|+++||+++|+..... .+.....++.++.......... .......++++.++++..............+..|+.
T Consensus 314 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 393 (465)
T TIGR00894 314 SIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRF 393 (465)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhH
Confidence 99999999998866543221 1112222222222221111111 222233333333333333333333434445566789
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQR---GSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~---~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.|.+.|+.++.+.+++.++|.+.|.+.+. .+|..+|.+.+++.+++.++..+..+
T Consensus 394 ~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~ 451 (465)
T TIGR00894 394 LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFGS 451 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence 99999999999999999999999998875 34888999998888888777665543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=283.83 Aligned_cols=357 Identities=16% Similarity=0.147 Sum_probs=257.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh-----hhccCHHHHHHHHHHHHhhhhchhhH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV-----AARIGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~-----a~~~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
.+.++.+..++...+++++.|+++||+|+|+++.++.++++++.++.++ ++ +++.+++.|+++|++.+...+.
T Consensus 65 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 142 (467)
T PRK09556 65 ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSV--SLGLMIALWALSGFFQSTGGPC 142 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccchH
Confidence 4455555666666777799999999999999999988888877776665 46 8999999999999999999999
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~---gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
..+++++|+|+++|++++|++..+.++|.++++++..++.... +||..|.+.+++.++..++.+++.++.|++....
T Consensus 143 ~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~ 222 (467)
T PRK09556 143 SYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG 222 (467)
T ss_pred HHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC
Confidence 9999999999999999999999999999999999988776643 6999999888888777776666666655432211
Q ss_pred cHHHHhh-h---hcCCcccccccc-h-hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHH
Q 008070 359 RAEEKRH-I---LGGSISKEAVSV-I-PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVL 432 (579)
Q Consensus 359 ~~~~~~~-~---~~~~~~~~~~~~-~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~ 432 (579)
+.++... . .....++++... . -.+.++++|.+|...+..++.....++...|+|.|+++.+|++..++++....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~ 302 (467)
T PRK09556 223 KAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTL 302 (467)
T ss_pred ChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 1111000 0 000000001110 1 12336889999999999998888888889999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHhhhhhhhhhhhhhhc
Q 008070 433 PWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNH 511 (579)
Q Consensus 433 ~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
..++.+++.++.|+++||+++|+...... ....+...+.. ........ ..+..+.++.+.............
T Consensus 303 ~~~~~~ig~~~~G~lsDr~g~r~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 375 (467)
T PRK09556 303 FEIGALVGSLLWGWLSDLANGRRALVACI-----ALALIIFTLGV--YQHATSEYMYLASLFALGFLVFGPQLLIGVAAV 375 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHH-----HHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999887543211 11111111111 11122222 223333333222222222122334
Q ss_pred cccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 512 QDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQ------------RGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 512 ~~~~~~~~g~~~g~~~~~~~l-g~~ig~~l~g~l~~------------~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+..|++.+|++.|+.+...++ |.+++|.+.|++.| ..||+..|.+.+++.+++.++.+.+.
T Consensus 376 ~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 376 GFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred hhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999997 77999999999999 57899999999888888877766553
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=268.46 Aligned_cols=364 Identities=15% Similarity=0.165 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~--~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
....++....+++..++++++|+++||+|||++++++.++.+++.+++++.+. .+++.+++.|++.|++.+...+...
T Consensus 63 ~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~ 142 (452)
T PRK11273 63 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 142 (452)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHH
Confidence 45677777888888899999999999999999999999999999998887631 1577889999999999998888888
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHH-HHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~-~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
..+.+++|+++|+++++++..+..+|. +.+|+++..+....+||+.|++.+++.++..++.+++.+++|++....++++
T Consensus 143 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 222 (452)
T PRK11273 143 RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEE 222 (452)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhh
Confidence 899999999999999999999999986 4566654444444599999999988877776666666666554321111111
Q ss_pred -HhhhhcC--Cccccccc-chh-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHH
Q 008070 363 -KRHILGG--SISKEAVS-VIP-WKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 437 (579)
Q Consensus 363 -~~~~~~~--~~~~~~~~-~~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~ 437 (579)
+.+..+. ..+.++.. ... .+.+++++.+|...+..++.....+....|+|.|+++..|++..+++.+..+..++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~ 302 (452)
T PRK11273 223 YKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 302 (452)
T ss_pred hhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0000000 00000001 111 234678999999988888888888888899999999988999999999888888999
Q ss_pred HHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHhhhhhhhhhhhhhhccccCC
Q 008070 438 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGP 516 (579)
Q Consensus 438 ~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (579)
+++.++.|+++||+++++.... ......+................. ..+..+.++.+.............+..|+
T Consensus 303 ~~g~~~~G~l~dr~~~~r~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 378 (452)
T PRK11273 303 IPGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK 378 (452)
T ss_pred HHHHHHHHHHHHHHccCCcchH----HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh
Confidence 9999999999999954321111 111111111111111111111222 22222222222211111111223456788
Q ss_pred CchhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 517 RYAGVLLGLSNTAGVLAGVF-GTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 517 ~~~g~~~g~~~~~~~lg~~i-g~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+.+|+++|+.+....+|+.+ +|.+.|++.|+.||+..|.++++++++++++...+.+
T Consensus 379 ~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 379 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888765 7999999999999999999988888888777665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.8e-30 Score=266.86 Aligned_cols=347 Identities=17% Similarity=0.200 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...+.++.+..+++..+++++.|++.||+|||+++.++.++++++.+++++++ +++.+++.|++.|++.+...+....
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~ 119 (412)
T TIGR02332 42 ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT--GPESLYLLRILVGIAEAGFLPGILL 119 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44567788888888999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~------~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
++.|++|+++|+++++++..+..+|.++++++++++.+ ..|||+.|++.+++.++..++.+++.+|+|++.+..
T Consensus 120 ~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l 199 (412)
T TIGR02332 120 YLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWL 199 (412)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCC
Confidence 99999999999999999999999999999999998864 369999999998888877776777777776543211
Q ss_pred cHHHHh---hh-hcCC-----cc----cccc-cchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCh
Q 008070 359 RAEEKR---HI-LGGS-----IS----KEAV-SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV-LKFNL 423 (579)
Q Consensus 359 ~~~~~~---~~-~~~~-----~~----~~~~-~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-~g~s~ 423 (579)
.+++++ +. .... .+ +.+. ....++.++ ++.+|...+..++.....+.+.+|+|.|+++. .|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~ 278 (412)
T TIGR02332 200 DEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSN 278 (412)
T ss_pred CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 111110 00 0000 00 0000 012344444 57888888888888888999999999999873 36788
Q ss_pred hhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhh
Q 008070 424 TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS 503 (579)
Q Consensus 424 ~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (579)
.+++.+.....++.+++.++.|+++||+++|+..... ...+....+.+... ..........+.....+....
T Consensus 279 ~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~- 350 (412)
T TIGR02332 279 IMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL------PYLFAAAGWLLASA-TDHNLIQLLGIIMASMGSFSA- 350 (412)
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH------HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhh-
Confidence 8889999999999999999999999999977532211 01111111111111 112221111111111111111
Q ss_pred hhhhhhh-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 008070 504 QSGLYSN-HQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYI 562 (579)
Q Consensus 504 ~~~~~~~-~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~ 562 (579)
.+..... .+..+++.+++++|+.+...++|++++|.+.|.+.|.. +|...+.+++++.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~~ 411 (412)
T TIGR02332 351 MAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALLV 411 (412)
T ss_pred hhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHHh
Confidence 1212222 33467789999999999999999999999999999986 59999887776543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-29 Score=264.87 Aligned_cols=346 Identities=14% Similarity=0.158 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCH--------HHHHHHHHHHHhhhhchh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL--------PFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~--------~~ll~~r~l~Gig~g~~~ 279 (579)
+..+.+..+++..++++++|+++||+|||+++.++.++++++.+++++++ ++ ..++++|+++|++.|..+
T Consensus 65 ~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 65 TAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLP--GYETIGTWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 34455677788889999999999999999999999999999999999988 54 358899999999999999
Q ss_pred hHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 280 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~--------~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
+...+++.|++|+++|+++.++...+...|.++++++...+. ..+|||++|++.+++.++... .....||+
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~ 221 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDET 221 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 999999999999999999999999888888888887765543 257999999987776655432 22223332
Q ss_pred CCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChhhhhHHh
Q 008070 352 PKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCH-NWGTFILLTWMPTYYNQVLKFNLTESGLFC 430 (579)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~ 430 (579)
++.+ . +.. ....++++++++++.+...+..++. ...++.+..|+|.|+.+.+|++..+.+...
T Consensus 222 ~~~~----~-~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~ 285 (432)
T PRK10406 222 SQQE----T-RAL-----------KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIM 285 (432)
T ss_pred chHH----H-hhh-----------cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2110 0 000 0012467788888887766655543 666778889999999888899998998888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-
Q 008070 431 VLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS- 509 (579)
Q Consensus 431 ~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 509 (579)
.+..+...++.++.|+++||++||+...... .+ ..+....+. ............+.+..++.+...........
T Consensus 286 ~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~--~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
T PRK10406 286 TAALFVFMLIQPLIGALSDKIGRRTSMLCFG--SL--AALFTVPIL-SALQNVSSPYAAFGLVMCALLIVSFYTSISGIL 360 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHH--HH--HHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999987543211 00 111111111 11111122222222222222222222222223
Q ss_pred hccccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 008070 510 NHQDIGPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV 577 (579)
Q Consensus 510 ~~~~~~~~~~g~~~g~~~~~~~l-g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 577 (579)
..+.+|++.|+++.|+.+...++ .+...|.+.+.+.+...+...+++.+++.+++.+..+++.++.|.
T Consensus 361 ~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 429 (432)
T PRK10406 361 KAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKG 429 (432)
T ss_pred HHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 34557789999999999887665 355577878865433446666777777777777766666665554
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-29 Score=261.84 Aligned_cols=340 Identities=15% Similarity=0.156 Sum_probs=254.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...+.++.+..+++..++.++.|+++||+|||+++..+.++++++.+++++++ +++.+++.|+++|++.+...+....
T Consensus 43 ~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~--~~~~ll~~r~l~Gig~~~~~~~~~~ 120 (393)
T PRK09705 43 FSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP--QSALLLSSALLGGVGIGIIQAVMPS 120 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc--chHHHHHHHHHHHhHHHHHhhhhhH
Confidence 44567888888889999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~ 363 (579)
++.+++| ++|+++++++..+..+|..+|+.+++++.++. +||+.+.+.++..++..+..+...++.|+++++. +
T Consensus 121 ~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 195 (393)
T PRK09705 121 VIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT----T 195 (393)
T ss_pred HHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC----C
Confidence 9999996 88999999999999999999999999988875 8999987766665544333333322222211000 0
Q ss_pred hhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 364 RHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
...++.++++..|.+.+..++....++....|+|.|+.+ +|++..+++.+.++..++.++++++
T Consensus 196 ---------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~ 259 (393)
T PRK09705 196 ---------------TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALL 259 (393)
T ss_pred ---------------cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHH
Confidence 011234567788877777777778888889999999988 7999999999999999999999999
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccC-CCchhHH
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIG-PRYAGVL 522 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 522 (579)
.+++.||+++++....+. .+...+................ ...+.+.....+.......+..+ ++++|+.
T Consensus 260 ~g~l~~r~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~ 330 (393)
T PRK09705 260 MPAMARHQDRRKLLMLAL-------VLQLVGFCGFIWLPLQLPVLWA--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKL 330 (393)
T ss_pred HHHHHhhccchHHHHHHH-------HHHHHHHHHHHHccchHHHHHH--HHHHHhccchHHHHHHHHHhhcCCHHHHHHH
Confidence 999999999886544321 1111111111111111122211 22223332333333333344444 4688999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
+|+.+....++..++|.+.|++.|..| |...|.+..++++++.++...+.++++
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999854 888888888887777777666655544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-29 Score=256.35 Aligned_cols=336 Identities=13% Similarity=0.038 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+..+++..+++++.|+++||+|||++++.+.+....+.+.....+ +++.+++.|+++|++.+. .......+
T Consensus 27 ~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~G~g~~~-~~~~~~~~ 103 (368)
T TIGR00903 27 ELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPF--NYEWLLACQLLAALGQPF-LLNAFAPA 103 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhHhHH-HHHHHHHH
Confidence 456777888888999999999999999999887666555545443333335 899999999999999985 55666777
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
++++|+++|++++++...+..+|.++++++++++.+.+|||+.|++.+++.++..++.++..||+|++.++..+.+
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~---- 179 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFK---- 179 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchH----
Confidence 9999999999999999999999999999999999999999999999999888887777777887665432110000
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
....++++++++|.+|.+.+..++....++++.+|+|.|+++ .|++.. .+....+..+.+.++ .++
T Consensus 180 ---------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~ 245 (368)
T TIGR00903 180 ---------DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAV 245 (368)
T ss_pred ---------HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHH
Confidence 001246788999999999999999999999999999999987 688865 566555555555554 467
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGL 525 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~ 525 (579)
+.||..|++.......... .+........ .........+.+..+..+......+.... ..+..|++.||++.|+
T Consensus 246 ~~d~~~r~~~r~~~~~~~~---~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~ 320 (368)
T TIGR00903 246 IPDRVARAGLRSIYIRAAA---LLIAAFFLAL--AFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGA 320 (368)
T ss_pred hhHHhhhhhhHHHHHHHHH---HHHHHHHHHH--HHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccch
Confidence 8887765421111000011 1111111111 11111222222333333323333233333 3455677899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
.+..+++++.++|++.+.+.. |....|.+.++..+++.+..++
T Consensus 321 ~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 321 IGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998884 7888888888888887777653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=258.28 Aligned_cols=328 Identities=17% Similarity=0.178 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.+......+...+++++.|+++||+|||++++.+.++.+++.+++++++ +++.+++.|+++|++.+...+...+++
T Consensus 56 ~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 56 VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN--SFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666667777888899999999999999999999999999999999988 899999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.|++|+++|++++++...+.++|.++||++++++.+.+|||+.|++.+++.++..++.....|+.++++++
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~--------- 204 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH--------- 204 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------
Confidence 99999999999999999999999999999999999999999999998877766555444444443321110
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWM-PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
.....+..+++|.++...+..++.....+....++ |.|.+ .+|+++.+.+++....+++.+++.++.+
T Consensus 205 ----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~~~~~ 273 (394)
T PRK10213 205 ----------QKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGTSLSS 273 (394)
T ss_pred ----------chhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 00123457889999887777666666666666776 55554 5799999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLG 524 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g 524 (579)
++.||.+++ ... .......+..+.+... .+..+.......+.+.......+.... ..+.. |++.+++.+
T Consensus 274 ~l~~r~~~~-~l~------~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 343 (394)
T PRK10213 274 FILKRSVKL-ALA------GAPLVLAVSALVLTLW--GSDKIVATGVAIIWGLTFALVPVGWSTWITRSL-ADQAEKAGS 343 (394)
T ss_pred HHHhccchh-HHH------HHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC-cccHHHHHH
Confidence 999995433 211 1111111111111111 122222222222223233334444443 33444 466778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~ 566 (579)
+.....++|..+|+.++|++.|..|+...+...+++.++..+
T Consensus 344 ~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 344 IQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 888888999999999999999999998888887766555443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-29 Score=265.03 Aligned_cols=347 Identities=16% Similarity=0.182 Sum_probs=230.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHH--------HHHHHHHHHhhhhchhhHHH
Q 008070 212 CFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF--------LLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 212 ~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~--------ll~~r~l~Gig~g~~~~~~~ 283 (579)
.++.+++..++++++|+++||+|||++++++.++++++.+++++++ +++. ++++|+++|++.|..++...
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~--~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~ 140 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIP--SYATIGIWAPILLLLCKMAQGFSVGGEYTGAS 140 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHH
Confidence 5778888999999999999999999999999999999999999999 6653 88999999999999999999
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED 355 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~--------~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~ 355 (579)
+++.|++|+++|+++.++...+..+|.++|+.+...+. ..+|||+.|++.+++.++. ++.....||+|+..
T Consensus 141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~esp~~~ 219 (490)
T PRK10642 141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEETPAFQ 219 (490)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCChhHH
Confidence 99999999999999999999988888888887665443 2579999999876655543 33334455554321
Q ss_pred hhhcHHHHhhhhcCCcccccccchhHHHHhhc-hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHH
Q 008070 356 PELRAEEKRHILGGSISKEAVSVIPWKLILSK-APVWA-LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP 433 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~ 433 (579)
......++.. .....+....++++++++ ++.+. .....++....++.+..|+|.|+++.+|++..+.++.....
T Consensus 220 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 295 (490)
T PRK10642 220 QHVDKLEQGD----REGLQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAI 295 (490)
T ss_pred HHHHhhhhhc----cccccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1110000000 000001112345555543 22222 22333445567788888999999887899988888877788
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhcc
Q 008070 434 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQ 512 (579)
Q Consensus 434 ~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 512 (579)
.++.+++.++.|+++||+|||+.+..+. +...+..................+. ++.+.+.............+
T Consensus 296 ~~~~~~~~~~~g~l~dr~grr~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 369 (490)
T PRK10642 296 MIGMLFVQPVMGLLSDRFGRRPFVILGS------VALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPA 369 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999997543221 1111111111111111222222221 22222111111111222334
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHh
Q 008070 513 DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 513 ~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..|++.||++.|+.+.+..+++.++|.+.|++.+.. ++...+.+..+..+++.+..++.
T Consensus 370 ~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 370 MFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999866667777889999999998864 45555555555555555555444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=255.84 Aligned_cols=338 Identities=17% Similarity=0.164 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+...++..++++++|++.||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+....++
T Consensus 39 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 39 AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--SYLMLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 356777888888999999999999999999999999999999999999999 899999999999999998888889999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.+++++++|++++++...+..+|..++|++++++.+..+||+.|++.+++.++..+..++..|+.+++.+. +.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~----- 190 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG-GLR----- 190 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc-CHH-----
Confidence 99999999999999999999999999999999999989999999999888777666555555654322110 000
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
..+ +.++++..|...+..++...+.+....+++.|+.+.+|+++.+.+++.....++.++++++.++
T Consensus 191 ------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 257 (382)
T PRK10091 191 ------------EQF-HFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGR 257 (382)
T ss_pred ------------HHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhe
Confidence 112 2456777777666655555556666677788888778999999999999999999999999999
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccc-cCCCchhHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQD-IGPRYAGVLLGL 525 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~ 525 (579)
+.||+++++....+. .+......+........+...+..+..+.+......+......++ .+++..+.+ .
T Consensus 258 l~~r~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~ 328 (382)
T PRK10091 258 LSGRYSPLRIAAVTD-------FIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--G 328 (382)
T ss_pred eccccCchhHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--H
Confidence 999999887544221 111111111111111122222222222222222222222222233 233445544 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 526 SNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.+....+|.++||.+.|.+.|. .+|+..+.+.+++.++.......+.++
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY 378 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677899999999999999996 789999998887777666555544433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=258.26 Aligned_cols=344 Identities=18% Similarity=0.203 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+...++..++.++.|+++||+|||+++.++.++..++.+++++++ +++.+++.|++.|++.+...+...+++
T Consensus 51 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~~~~ 128 (406)
T PRK11551 51 QMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW--DFPSLLVARLLTGVGLGGALPNLIALT 128 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666777777788889999999999999999999999999999999988 899999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.|++|+++|++++++...+..+|..+++.+++.+.+..+||+.|++.+++.++.+++.....||+++...+....+..
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 206 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-- 206 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh--
Confidence 999999999999999999999999999999999988899999999988776666655555566554321111000000
Q ss_pred hcCCcccccccchhHHHHhh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILS---KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
+ ...+..++ .+..+.+.+..++.....+....|+|.|+++ .|+++.+.+.+.....++.++++++
T Consensus 207 --------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~ 274 (406)
T PRK11551 207 --------A---PVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLL 274 (406)
T ss_pred --------h---hhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHH
Confidence 0 01111221 2333444444555555666777889999988 7999999999999999999999999
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHH
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 523 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 523 (579)
.|++.||+++++..... .......+..... ..+.....+..+..+.+.............+..|++++|++.
T Consensus 275 ~g~l~dr~g~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 346 (406)
T PRK11551 275 IGALMDRLRPRRVVLLI-------YAGILASLAALAA-APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGV 346 (406)
T ss_pred HHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhh
Confidence 99999999988654321 1111111111111 112222222223333333233333333345567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 524 GLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 524 g~~~~~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
|+.+....+|.+++|.+.|.+.++. ++...+.....+.+++.++.+...++
T Consensus 347 g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (406)
T PRK11551 347 GAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR 398 (406)
T ss_pred hHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999974 56666666666666666555544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=257.56 Aligned_cols=338 Identities=18% Similarity=0.166 Sum_probs=252.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...+.++.+...++..+++++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+....
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 114 (377)
T TIGR00890 37 VTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD--SLAALYLTYGLASAGVGIAYGIALN 114 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 45678888889999999999999999999999999999999999999999999 8999999999999999988888888
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.+.+++| |+|++++++...+.++|.++++++.+.+.+..+||+.|++.+++.++..++.++..++++++..+.+.+
T Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 190 (377)
T TIGR00890 115 TAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIE--- 190 (377)
T ss_pred HHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcc---
Confidence 9999996 789999999999999999887777777777889999999999888887776666655433221110000
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
........++.++++.++.+.+..++..........+.+.|.++ +|.+..+.+.+.....++.++++++.
T Consensus 191 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (377)
T TIGR00890 191 ---------VSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGRPFL 260 (377)
T ss_pred ---------cchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011235567888888888777777666666666777777766 78888889999999999999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 523 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 523 (579)
|++.||+++|+....+. ........+............ ......+.+.............+..++++++++.
T Consensus 261 g~l~dr~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 333 (377)
T TIGR00890 261 GALSDKIGRQKTMSIVF-------GISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANY 333 (377)
T ss_pred HHHHHHHhhhhhhhHHH-------HHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHh
Confidence 99999999987644321 111111111111111111111 1222222222222222222344556789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 008070 524 GLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGT 565 (579)
Q Consensus 524 g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~ 565 (579)
|+.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.
T Consensus 334 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 334 GFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998888777654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=263.33 Aligned_cols=365 Identities=16% Similarity=0.204 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..++.....++..++.++.|+++||+|||++++++.++.+++.+++++.+. .+++.+++.|++.|++.+..++.....
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 142 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT 142 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 456666777788888899999999999999999999999999888776531 156778899999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH-HH
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE-EK 363 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~-~~ 363 (579)
+.|++|+++|++++++.+.+..+|..+++.+.+.+.. ..+||+.|++.+++.++..++.++..+|+|+.....+.+ .+
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR 222 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc
Confidence 9999999999999999999999999999888776444 579999999998888877666666666654321100000 00
Q ss_pred hhhhc---CCccccc-ccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHH
Q 008070 364 RHILG---GSISKEA-VSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439 (579)
Q Consensus 364 ~~~~~---~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~i 439 (579)
.+... +..+.+. ......+.+++++.+|...+..++.....+.+..++|.|+++..|+++.+++++..+..+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~i 302 (438)
T TIGR00712 223 NDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 302 (438)
T ss_pred cccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHH
Confidence 00000 0000000 0011123467889999988888888888888889999999998899999999999999999999
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 440 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
+.++.|++.||+++++....+. .......+ .............+.. ...+.++.+.............+..+++.
T Consensus 303 g~~~~g~l~dr~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
T TIGR00712 303 GTLLCGWMSDKVFKGNRGATGV--FFMTLVTI--AVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA 378 (438)
T ss_pred HHHHHHHHHHHhccCcccHHHH--HHHHHHHH--HHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh
Confidence 9999999999997554322211 11111111 1111111111112221 12222222111111111122345567789
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 008070 519 AGVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~-~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
+|++.|+++....+++ +++|.+.|.+.|..||..++.+.+++.+++.++.+++.+++|
T Consensus 379 ~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 379 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred eeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999888875 689999999999999999999988888888888877777765
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=256.59 Aligned_cols=338 Identities=14% Similarity=0.104 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+...++..++.++.|++.||+|||++++.+.++.+++.+++++++ +++.+++.|+++|++.+...+...+++
T Consensus 43 ~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 43 SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH--SLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 455666677788888999999999999999999999999999999999998 889999999999999998889999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
.+++|+++|++++++......+|..++|.+.+.+.. ..+||+.|++.+++.++..++.++. +.|+.+++..+ +.
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~--~~p~~~~~~~~-~~-- 195 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFS--EFPALGKHAPK-AD-- 195 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhc--CCccccccCcc-cc--
Confidence 999999999999999999999999999999888764 5799999998888776655544432 22211111000 00
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
++. .+ ...++.++...+..++.....+.+..|+|.|+++.+|+++.+.+.+.+...++.++++++.+
T Consensus 196 --------~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g 262 (394)
T PRK03699 196 --------KPV----AK-EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFS 262 (394)
T ss_pred --------Ccc----cc-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHH
Confidence 000 01 11245667777777777777888889999999888999999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
++.||+++|+...... .+. ...+.+... ..+..+.....+..+.+.... .+.......+..++.+++..|.
T Consensus 263 ~l~dr~~~~~~l~~~~-----~~~--~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 333 (394)
T PRK03699 263 FIVRFFDLQRILTVLA-----GLA--LVLMYLFVN-TDDPSHLLYAILGLGFFSSAI-YTTIITLGSQQTKVASPKLVNF 333 (394)
T ss_pred HHHHHhchhhHHHHHH-----HHH--HHHHHHHHH-cCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHH
Confidence 9999999987544211 111 111111111 122223333333333333322 2333333333345566788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
......+|..++|.+.|++.+..|+...+++.+++.+++.++.+...+
T Consensus 334 ~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 334 ILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888887777655544433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-28 Score=255.17 Aligned_cols=345 Identities=17% Similarity=0.190 Sum_probs=235.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHH--------HHHHHHHHHHhhhhchhhHH
Q 008070 211 LCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 211 l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~--------~ll~~r~l~Gig~g~~~~~~ 282 (579)
.....+++..+++++.|+++||+|||++++++.++++++.+++++++ +++ .++++|+++|++.|..++..
T Consensus 69 ~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 146 (438)
T PRK09952 69 TFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLP--SFSTIGWWAPVLLVTLRAIQGFAVGGEWGGA 146 (438)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 34466777888999999999999999999999999999999999999 665 58899999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCC
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ--------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE 354 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~--------~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~ 354 (579)
..++.|++|+++|++..+....+..+|.+++..+...+.. .+|||+.|++.+++.++. +......||+|+.
T Consensus 147 ~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~ 225 (438)
T PRK09952 147 ALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEF 225 (438)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhH
Confidence 9999999999999999999999999999999887776652 579999999877665432 2222223333211
Q ss_pred ChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHH
Q 008070 355 DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLP 433 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~ 433 (579)
. ...++. + +.++ .....+.++++++.+...+ ..++..+..+....|.|.|+++.+|++......+....
T Consensus 226 ~---~~~~~~---~--~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~ 295 (438)
T PRK09952 226 E---QQQHEQ---A--AAKK--RIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLV 295 (438)
T ss_pred H---HHHhhc---c--cccc--cCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 000000 0 0000 1112234567777666544 45555667777888999999888899887666556666
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhh-hhhhhcc
Q 008070 434 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQS-GLYSNHQ 512 (579)
Q Consensus 434 ~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 512 (579)
++..+++.++.|+++||++||+....+. . ...+............+..+..++...+..+......+ ......+
T Consensus 296 g~~~~i~~~~~g~l~Dr~grr~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 370 (438)
T PRK09952 296 GGLSCLTIPCFAWLADRFGRRRVYITGA--L---IGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTE 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHH--H---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999997654321 1 11111111111111122222222222222222222222 2233445
Q ss_pred ccCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 513 DIGPRYAGVLLGLSNTAG-VLAGVFGTAATGYILQR--GSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 513 ~~~~~~~g~~~g~~~~~~-~lg~~ig~~l~g~l~~~--~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.+|++.|+++.|+.+... .+++.++|.+.|++.+. .+|...+.+.+++.+++.+..+.+++
T Consensus 371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 434 (438)
T PRK09952 371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKD 434 (438)
T ss_pred HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccc
Confidence 567788999999866554 48999999999999885 35888888888888888777666544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-28 Score=256.78 Aligned_cols=346 Identities=14% Similarity=0.088 Sum_probs=237.1
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcC
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS 293 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~ 293 (579)
..+++..++.++.|+++||+|||+++..+.++++++.+++++++ +++.+++.|++.|++.+.. .....++++++|++
T Consensus 79 ~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~ 155 (476)
T PLN00028 79 ASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGK 155 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChh
Confidence 34445555669999999999999999999999999999999998 8899999999999998864 44567899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 294 ERSRSLAFVYSGMYLGSVTGLAVSPILIQ---------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 294 ~r~~~~g~~~~~~~lG~~lgp~i~~~l~~---------~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+|++++++......+|..+++.+.+.+.. ..|||+.|++.+++.++..++.+++.++.|+...+ +.+++
T Consensus 156 ~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~~~ 233 (476)
T PLN00028 156 IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELKKS 233 (476)
T ss_pred heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHHhc
Confidence 99999999988777777777666654432 25899999999998887777666665554432211 10000
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
.. .++......+++.++++++|.+.+..++.....+.+..++|.|+.+.+|++..+++.+.++..++.++++++.
T Consensus 234 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~ 308 (476)
T PLN00028 234 ----GT-MPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAG 308 (476)
T ss_pred ----Cc-cccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 0001111345667788898888877776666667778889999988889999999999999999999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
|+++||+++|+.... +.....+..++.++..............++.+.+.................++.++.+|++.|
T Consensus 309 G~lsDr~~~r~~~~~--r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 386 (476)
T PLN00028 309 GYLSDVAARRFGMRG--RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISG 386 (476)
T ss_pred HHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhh
Confidence 999999987632111 001111111111111111122222222222222222222222223333444567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+.+....+|+++++.+.+ ..+..+|...|.+.+++.+++.++.++.+
T Consensus 387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 988877777777776654 22345799999999988888888777664
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=251.18 Aligned_cols=342 Identities=14% Similarity=0.072 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.+..+...++..+..++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|+++|++.+...+...+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i 126 (406)
T PRK15402 49 WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--SIEQFTLLRFLQGIGLCFIGAVGYAAI 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 445556677778888889999999999999999999999999999999988 899999999999999998889999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.|++|+++|.+++++......+|..+||.+++.+.+..+||+.|++.+++.++..+..++..|+++++.++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 201 (406)
T PRK15402 127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL----- 201 (406)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-----
Confidence 999999999999999999999999999999999999899999999988888776665555555543221111000
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
.....+++.++++|.++...+..++..........+.|.|+.+.+|+++.+.++......++.+++.++.++
T Consensus 202 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~ 273 (406)
T PRK15402 202 --------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLAR 273 (406)
T ss_pred --------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001134567889999998888777777666677778899988888999999998888778889999999999
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
+.||+++++....+. ....++........ .......+ ......+.+.+... ..+..........++++|++.++
T Consensus 274 l~~r~~~~~~~~~~~--~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~g~g~~~-~~~~~~~~~~~~~~~~~g~~~~~ 348 (406)
T PRK15402 274 LTSRRPLRSLIRMGL--WPMVAGLLLAALAT--VISSHAYLWLTAGLSLYAFGIGL-ANAGLYRLTLFSSDVSKGTVSAA 348 (406)
T ss_pred HHHhcCHHHHHHHHH--HHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhccccccHHHHH
Confidence 999999887544321 11111222111111 11112222 22222333333322 22232233333456899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~ 568 (579)
++....++..+|+.+.+.+.+..+........++..++..++.
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLV 391 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998775554444444444443333
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-28 Score=263.62 Aligned_cols=342 Identities=15% Similarity=0.108 Sum_probs=229.6
Q ss_pred HHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchh
Q 008070 217 LLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERS 296 (579)
Q Consensus 217 ~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~ 296 (579)
++..++.+++|+++||+|||++++++.++.+++.+++++++ +++.++++|++.|++.++..+...+++.|++|+++|+
T Consensus 213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~--s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg 290 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ--GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG 290 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34444558999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-------------cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChh---hcH
Q 008070 297 RSLAFVYSGMYLGSVTGLAVSPILIQK-------------FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE---LRA 360 (579)
Q Consensus 297 ~~~g~~~~~~~lG~~lgp~i~~~l~~~-------------~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~---~~~ 360 (579)
+.++++.++..+|.++++.++..+... .+||+.+++.++..++. ++.+++.||+|+.... ..+
T Consensus 291 ~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~~~~lPESPrwL~~~gr~~e 369 (742)
T TIGR01299 291 EHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGALTFMPESPRFFLENGKHDE 369 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHCCCHHH
Confidence 999999999999999999988776643 35889888777665544 4455566777642100 000
Q ss_pred HH--HhhhhcC---------------------Cc----c--cccc----------------cchhHHHHhhc---hHHHH
Q 008070 361 EE--KRHILGG---------------------SI----S--KEAV----------------SVIPWKLILSK---APVWA 392 (579)
Q Consensus 361 ~~--~~~~~~~---------------------~~----~--~~~~----------------~~~~~~~l~~~---~~~~~ 392 (579)
.. ....... .. + .... .+..++.+++. +..+.
T Consensus 370 A~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~ 449 (742)
T TIGR01299 370 AWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIK 449 (742)
T ss_pred HHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHH
Confidence 00 0000000 00 0 0000 00123444433 23566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----h-------------------------------------CC-----C----
Q 008070 393 LIISHFCHNWGTFILLTWMPTYYNQV----L-------------------------------------KF-----N---- 422 (579)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~p~~l~~~----~-------------------------------------g~-----s---- 422 (579)
+++..++..++++++..|+|.++.+. + |+ .
T Consensus 450 l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (742)
T TIGR01299 450 LMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDS 529 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccc
Confidence 77788888899999999999876541 0 00 0
Q ss_pred ----------------------------------------------------------------hhhhhHHhHHHHHHHH
Q 008070 423 ----------------------------------------------------------------LTESGLFCVLPWLTMA 438 (579)
Q Consensus 423 ----------------------------------------------------------------~~~~g~~~~~~~~~~~ 438 (579)
.....+...+..++.+
T Consensus 530 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i 609 (742)
T TIGR01299 530 LFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVL 609 (742)
T ss_pred cccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHH
Confidence 0012333556668889
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCC
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPR 517 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 517 (579)
++.++.|+++||+|||+++..+. .+..+..+++... .+...++++.++++++.... .+.... ..+.+|++
T Consensus 610 ~G~il~g~L~Dr~GRr~~l~~~~-------~lsai~~ll~~~~-~s~~~ll~~~~l~g~~~~~~-~~~~~a~~aEl~Pt~ 680 (742)
T TIGR01299 610 PGNIVSALLMDKIGRLRMLAGSM-------VLSCISCFFLSFG-NSESAMIALLCLFGGLSIAA-WNALDVLTVELYPSD 680 (742)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-------HHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHH
Confidence 99999999999999997643221 1111111111111 11222222223333333333 333334 44556779
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 518 YAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 518 ~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.|++++|+.+.+..+|.+++|+++|.+.+. +....|++.+++.++++++.+++
T Consensus 681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 681 KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998875 46677777777777776666555
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=250.75 Aligned_cols=348 Identities=13% Similarity=0.104 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH---hhhccCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---VAARIGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~---~a~~~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
.+.++.....+...++.++.|++.||+|||+++..+.++.+++.+++. +.. .+++.+++.|++.|++.+...+...
T Consensus 49 ~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~i~G~g~~~~~~~~~ 127 (402)
T TIGR00897 49 QSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH-ANYPLILLFYGIRGLGYPLFAYSFL 127 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC-ccHHHHHHHHHHHHcchHHHHhHHH
Confidence 456667777788888999999999999999999999999998876653 221 1688889999999999988888888
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHH-HHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~-~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
+.+.+++|+++|++++|+..++.++|. +++|++++++.+.+||+..+|......++..++.++..++.+++..+.++.
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 206 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQTRE- 206 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCcccccCCc-
Confidence 889999999999999999999999997 689999999998889776666554443333333444444332211110000
Q ss_pred HhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHH
Q 008070 363 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~ 442 (579)
+..+....++.++++|.++...+..++.....+.+.++.|.|+++ +|++..+.+.+.....++.+++.+
T Consensus 207 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~ 275 (402)
T TIGR00897 207 ----------KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNV 275 (402)
T ss_pred ----------chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHH
Confidence 000111235678899999988888888888888889999999876 899999999988888999999999
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhH
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGV 521 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 521 (579)
+.|++.||+++|+..... .....++....+...... ....+...+..+..+.+.... .+. .....+.+|+++|+
T Consensus 276 ~~g~l~dr~~~~~~~~~~---~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~-~~~~~~~~~~~~g~ 350 (402)
T TIGR00897 276 IFGIVGDKLGWMNTVRWF---GGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGY-VPL-AAVFPTLAPKHKGA 350 (402)
T ss_pred HHHHHHHhhcchhHHHHH---HHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-HHH-HHHHHhhCcchhHH
Confidence 999999999988653210 011111111111111111 112222223333333333222 222 23334567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 522 LLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 522 ~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
++|+.+....+++.++|.+.|.+.+..|+...+++.+++.+++.++..+++
T Consensus 351 ~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 351 AMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988888877766553
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=250.51 Aligned_cols=338 Identities=15% Similarity=0.101 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHH-HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
..+.++.+...+...+.+++.|+++||+|||+.++ .+.++..++.+++++++ +++.+++.|++.|.+.+...|...+
T Consensus 33 ~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~p~~~~ 110 (375)
T TIGR00899 33 AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNR--NYFLLLVLGVLLSSFASTANPQLFA 110 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34566667777778888899999999999988755 45666667778888888 8888999999999888888888889
Q ss_pred HHhcccCcCchhHH--HHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 285 MLSKWIPVSERSRS--LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 285 ~i~~~~~~~~r~~~--~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
++.++.|+++|++. .++...+.++|.++||++++++.+.++||+.|++.+++.++..++.++..||.|++.++..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 187 (375)
T TIGR00899 111 LAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL--- 187 (375)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---
Confidence 99999887777654 6888888999999999999999999999999999988877777666666666543221110
Q ss_pred HhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHH
Q 008070 363 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~ 442 (579)
. ..+.+..++++.++.+.+..++..........++|.|+.+.+|.++.+.+.+.....+..+++.+
T Consensus 188 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 253 (375)
T TIGR00899 188 T--------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFML 253 (375)
T ss_pred C--------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01223356677777666666655555566667889999888899999999888777777888889
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
+.|++.||+++|+....+. ....+ ....... .+..+.......+.+...+...+.......+..|++++++
T Consensus 254 ~~g~l~~r~g~~~~~~~~~-----~~~~~--~~~~~~~--~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 324 (375)
T TIGR00899 254 LAGYLIKRFGKRRLMLLAA-----LAGVA--FYTGLAA--DNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAA 324 (375)
T ss_pred hHHHHHHHhcchhHHHHHH-----HHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 9999999999987543221 11111 1111111 1222222222222222222233333344455566778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+|+++...++|..++|.+.|.+.+..||+..|.+.+++.+++.++...+
T Consensus 325 ~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 325 TTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999998888877766544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=258.07 Aligned_cols=343 Identities=18% Similarity=0.173 Sum_probs=251.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+...++..++.++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+...++
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 107 (379)
T TIGR00881 30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--SLWVMAALWALNGIFQGMGWPPCGRT 107 (379)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHhhccccCCchHHH
Confidence 3457777888888899999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGL-AVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp-~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+.|++|+++|++++++...+..+|.++++ ++++.+.+..+||+.|++.+++.++..++.++..++++++......++..
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T TIGR00881 108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP 187 (379)
T ss_pred HHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc
Confidence 99999999999999999999999999999 57777777889999999988887776666666666554332111110000
Q ss_pred -hh-h---cCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHH
Q 008070 365 -HI-L---GGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439 (579)
Q Consensus 365 -~~-~---~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~i 439 (579)
+. . ....++........+.++++|.++.+.+..++.......+..+.|.|+.+.+|+++.+.+++.....++.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 267 (379)
T TIGR00881 188 NEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLV 267 (379)
T ss_pred ccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcch
Confidence 00 0 000001111123456778899999998888888888888999999999988899999999999999999999
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 440 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
+.++.+++.||..+++..... ..........+...... ..+........+..+.+.............+..|++.
T Consensus 268 ~~~~~g~l~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 343 (379)
T TIGR00881 268 GTLLAGWLSDKLFNGRRGPLA----VFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA 343 (379)
T ss_pred hHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch
Confidence 999999999987544322211 11111111111111111 1112222222223332222222222233455678899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHH
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVF 554 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~ 554 (579)
+|++.|+.+....+|..++|.+.|.+.|..||+..|
T Consensus 344 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 344 AGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 999999999999999999999999999998887643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=259.30 Aligned_cols=330 Identities=15% Similarity=0.127 Sum_probs=245.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
+.++.....+......+++|+++||+|||++++++.+++.++.+++++++ +++.++++|+++|+|.+...+.....+.
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~li~~r~l~G~g~~~~~~~~~~~l~ 120 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP--TASWLIATRALLAIGAAMIVPATLAGIR 120 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667779999999999999999999999999999999999 9999999999999999999888888887
Q ss_pred ccc-CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH-HHH--
Q 008070 288 KWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-EEK-- 363 (579)
Q Consensus 288 ~~~-~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~-~~~-- 363 (579)
+++ |+++|++++|++.....+|..+||++++++.+.+||||.|++...+.++.+++.++..|+++++..+..+ ...
T Consensus 121 ~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~ 200 (495)
T PRK14995 121 ATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALM 200 (495)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHH
Confidence 776 6789999999999999999999999999999999999999998888877777766666665432211110 000
Q ss_pred ------------hhhhcCC-----------------------cccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 008070 364 ------------RHILGGS-----------------------ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL 408 (579)
Q Consensus 364 ------------~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 408 (579)
....... +.+.+.+..+ ..+++++.++...+..++.....++..
T Consensus 201 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~ 279 (495)
T PRK14995 201 LIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFE 279 (495)
T ss_pred HHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence 0000000 0011112222 246788888888888888888888888
Q ss_pred HHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhc-cchhH
Q 008070 409 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH-VRTPA 487 (579)
Q Consensus 409 ~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 487 (579)
.++|.|+++.+|+++.++|+......++..++.++.|++.||+++|+....+. .+..++.. .+..... .+.+.
T Consensus 280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~--~~~~~~~~----~l~~~~~~~~~~~ 353 (495)
T PRK14995 280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGM--ALSALSFY----GLAMTDFSTQQWQ 353 (495)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH--HHHHHHHH----HHHHhcCCCchHH
Confidence 89999999999999999999999999999999999999999999886443221 11111111 1111111 22222
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 488 MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
.....++.+.+.+....+......+.+|+++++.+.++.++...+|+.+|+.+.|.+.+
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444444444444455555666788999999999999999999999999999875
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=245.53 Aligned_cols=324 Identities=16% Similarity=0.207 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.....++..++.++.|+++||+|||+++.++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++
T Consensus 41 ~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~ 118 (385)
T TIGR00710 41 IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--NIETLLVLRFVQAFGASAGSVISQALV 118 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 456777777888889999999999999999999999999999999999998 899999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.|++|+++|++++++......+|..+++.+++.+.+..+||+.|++.+++.++..++.++..|+.++++++.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 194 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQIST---- 194 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHH----
Confidence 9999999999999999999999999999999999999999999999888877766666665555443222111111
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
....++++++++.++...+...+.....+....+.|.++.+.+|+++.+.+++.....++.+++.++.|+
T Consensus 195 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~ 264 (385)
T TIGR00710 195 ----------YFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGR 264 (385)
T ss_pred ----------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124566788999888887777777777778888899998889999999999999999999999999999
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH-HHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
+.||+++|+....+. ....++.+.... ................ ..+.+.... .+.......+..|+.++++.++
T Consensus 265 l~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 339 (385)
T TIGR00710 265 FIKKWGAKSLLRMGL--ILFAVSAVLLEI--TAILGLGSWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFPHVAGTASAL 339 (385)
T ss_pred HHHhcCHHHHHHHHH--HHHHHHHHHHHH--HHHhccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCcccchHHHHH
Confidence 999999987554321 111111111111 1111111222222222 222323223 3333333333346789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
.+.....++.+.+.+.+.+.+..++.
T Consensus 340 ~~~~~~~~g~i~~~~~~~~~~~~~~~ 365 (385)
T TIGR00710 340 FGTLRLVLGAIVGYLVSLIHGNTAWP 365 (385)
T ss_pred HHHHHHHHHHHHHHHHHhccccChHH
Confidence 99988876677777777554444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=246.58 Aligned_cols=329 Identities=15% Similarity=0.112 Sum_probs=242.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHhhhhchhhH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR---IGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~---~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
...+.++.....+...+..+++|+++||+|||++++++.++..++.++.++... .+++.+++.|++.|++.+...+.
T Consensus 33 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888899999999999999999999999999998888887776641 26788999999999999999999
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~ 361 (579)
..+++.|++|+++|++++++...+..+|.++||++++++.+..|||+.|++.++..++..++.+...++++++.++.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALS 192 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999887766655544443332222111111000
Q ss_pred HHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChhhhhHHhHHHHHHHHHH
Q 008070 362 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL-TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVF 440 (579)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig 440 (579)
++. .+.....++.++++|.++...+..++......... .+.|.|.++.+|.+..+.+.+.....++.+++
T Consensus 193 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
T TIGR00900 193 NAV---------LRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLG 263 (365)
T ss_pred hhH---------HHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 000 00111345667889999888888777777776666 78899998878999999999999999999999
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchh
Q 008070 441 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAG 520 (579)
Q Consensus 441 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 520 (579)
.++.+++.||+++++....+ ................+.+...+..+..+.+.....+.......+.+|++++|
T Consensus 264 ~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 336 (365)
T TIGR00900 264 ALLLGLLGRYFKRMALMTGA-------IFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG 336 (365)
T ss_pred HHHHHHHHHHhchhHHHHHH-------HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999988643321 11111111111111111222223333333333333333334455667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 521 VLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 521 ~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
++.|+.+....++..++|.+.|.+.|..|
T Consensus 337 ~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 337 RVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998754
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=251.29 Aligned_cols=337 Identities=17% Similarity=0.128 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
..++.....++..++.++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|+++|++.+...+....++.
T Consensus 55 ~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~~~ 132 (426)
T PRK12307 55 GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTLSRFIVGMGMAGEYACASTYAV 132 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45666677788888899999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
|++|+++|++++++...+..+|.++++.+.+.+.+.++||+.|++.++..++ .+......|+++ +...+ +.....
T Consensus 133 ~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~---~~~~~-~~~~~~ 207 (426)
T PRK12307 133 ESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESK---EWEEA-KLSGKG 207 (426)
T ss_pred HhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCCh---HHHHh-hhhccc
Confidence 9999999999999999999999999999999999989999999875433222 211111112211 11000 000000
Q ss_pred cCCcccccccchhHHHHhhchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAPVWALIISHF---CHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
+............++++++++.++...+... ......+.+..++|.|+.+ .|+++.+.+.+.+...++.++++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~ 286 (426)
T PRK12307 208 KHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVW 286 (426)
T ss_pred cccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111225667788887765443322 2233334467789999988 69999999999999999999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLL 523 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 523 (579)
|++.||+++|+....+. .+................... ...+..+...............+.+|++.+|+++
T Consensus 287 g~l~dr~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 359 (426)
T PRK12307 287 GLCADRIGLKKTFSIGL-------LMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGT 359 (426)
T ss_pred HHHHHHhccHHHHHHHH-------HHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhh
Confidence 99999999986543221 111111111111111111211 1111111111111111122234557788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008070 524 GLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV 559 (579)
Q Consensus 524 g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~ 559 (579)
|+.+.+..+++.++|.+.|++.+..|+.....+..+
T Consensus 360 g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~ 395 (426)
T PRK12307 360 GLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVA 395 (426)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999999999887765444333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=250.16 Aligned_cols=339 Identities=15% Similarity=0.169 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
+.++.+...++..++.++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 126 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIGIGMGGEYGSSAAYVI 126 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 45666777788888889999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC--cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH-Hh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG--WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE-KR 364 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g--wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~-~~ 364 (579)
|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+.|++.++..++.. +.....||+++..++.+.++ ..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 205 (405)
T TIGR00891 127 ESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVR 205 (405)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhh
Confidence 99999999999999999999999999999999988766 9999987655544433 33333444332111111000 00
Q ss_pred h----hhcCCcccccc---cchhHHHHh-hc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH
Q 008070 365 H----ILGGSISKEAV---SVIPWKLIL-SK-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 435 (579)
Q Consensus 365 ~----~~~~~~~~~~~---~~~~~~~l~-~~-~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~ 435 (579)
. ..+.....+.. .....+... ++ +.+..+.+...+..........++|.|+.+.+|++..+.+.+.....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 285 (405)
T TIGR00891 206 TMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNI 285 (405)
T ss_pred hHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0 00000000000 000011100 11 112223333334444455666788999988889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhcccc
Q 008070 436 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDI 514 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 514 (579)
+.+++.++.+++.||+++|+.+..+. ... .......... ....+...+. ...+.+.............+..
T Consensus 286 ~~~~g~~~~g~l~dr~g~~~~~~~~~-----~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (405)
T TIGR00891 286 GAIVGGCVFGFLGDWLGRRKAYVCSL-----LAG-QLLIIPVFAI--GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF 357 (405)
T ss_pred HHHHHHHHHHHHHHHhCchhhhHHHH-----HHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHHccchhhHHHHHhhhC
Confidence 99999999999999999987654321 011 0111111111 1222222222 2222222222222233345557
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 008070 515 GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVA 557 (579)
Q Consensus 515 ~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~ 557 (579)
|++.+|+++|+.+.+..++..++|++.|++.|+.| |..++...
T Consensus 358 ~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 358 PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 78999999999999999999999999999999977 77666543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=242.30 Aligned_cols=331 Identities=14% Similarity=0.120 Sum_probs=231.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhh-----hccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 213 FSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA-----ARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 213 ~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a-----~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
++..+...+.+++.|++.||+|.|+++.++.+++++.+++++++ + +++.+++.|++.|++ +..++.....++
T Consensus 77 ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~--s~~~lli~r~l~Gig-g~~f~~~~~~vs 153 (462)
T PRK15034 77 ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT--PFGIFIVIALLCGFA-GANFASSMGNIS 153 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC--CHHHHHHHHHHHHHH-HHhHHHHHHHHH
Confidence 33444455556888999999999999999999999999999987 6 899999999999998 668899999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh-----c-------------ccCcchHHHHhhHHHHHHHHHHHhhhc
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-----Q-------------KFGWPSVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~-----~-------------~~gwr~~f~i~~~~~li~~~l~~~~~~ 349 (579)
+|+|+++||+++|+.....++|..+++++...++ . ..+||.++++..++.++..++.++..+
T Consensus 154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 154 FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998777777776666555433 2 234777777887777777766666655
Q ss_pred CCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHH
Q 008070 350 SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~ 429 (579)
+.++.+.. ....+.++|+|..|.+++.+++.+..+.++..++|.|+++.+ +.......
T Consensus 234 ~~~~~~~~--------------------~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~ 291 (462)
T PRK15034 234 DIASSRAS--------------------IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRL 291 (462)
T ss_pred CccccccC--------------------HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHH
Confidence 43321110 122455899999999999999999999999999999998855 33333333
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHhhhhhhhhhhh
Q 008070 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV--RTPAMAVLCMACSQGSDAFSQSGL 507 (579)
Q Consensus 430 ~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
..+..+...+.++++|+++||+|++++...+.. ...+.. .......... ...+.....+...+...+......
T Consensus 292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i--~~~i~~---~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv 366 (462)
T PRK15034 292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFI--FMAIFS---ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST 366 (462)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHH--HHHHHH---HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH
Confidence 444567788899999999999999976554321 111111 1111111111 122222222222222222222222
Q ss_pred hh-hccccCC---------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Q 008070 508 YS-NHQDIGP---------------------RYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 508 ~~-~~~~~~~---------------------~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~ 564 (579)
+- ....++. ++.|.+.|+....+.+|+++.|.+.|...+. .++...|+...+..+++
T Consensus 367 fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~ 446 (462)
T PRK15034 367 FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVC 446 (462)
T ss_pred HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 21 1111121 2678999999999999999999999999887 67999999999998888
Q ss_pred HHHHHHhhc
Q 008070 565 TLVWNLFAT 573 (579)
Q Consensus 565 ~~~~~~~~~ 573 (579)
.++.+....
T Consensus 447 ~~~~w~~y~ 455 (462)
T PRK15034 447 VLLTWLVYG 455 (462)
T ss_pred HHHHHHHhc
Confidence 877665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-28 Score=256.59 Aligned_cols=367 Identities=14% Similarity=0.125 Sum_probs=246.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~-~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
.....++.+..+++..++.+++|+++||+|||++++++.+++.++.+++.+... .+++.+++.|+++|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 345677888888999999999999999999999999999999999998866542 2456899999999999999999999
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHH---HHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCC-----C
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS---PILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE-----D 355 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~---~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~-----~ 355 (579)
+++.|++|+++|++++++...+..+|.+++++++ ..+....+||+.|++.++..++..+ ..++.+++|.. .
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 228 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPESPRWLVGKGR 228 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHcCC
Confidence 9999999999999999999999999999999999 6666778999999996655554443 34445554421 1
Q ss_pred hhhcHHHHhhhhcCCccccc-----------------ccchhHHHHhh------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 356 PELRAEEKRHILGGSISKEA-----------------VSVIPWKLILS------KAPVWALIISHFCHNWGTFILLTWMP 412 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~------~~~~~~~~l~~~~~~~~~~~~~~~~p 412 (579)
.+...+.............. .....++.+++ .+.++...+..+...........+.|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (481)
T TIGR00879 229 VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSP 308 (481)
T ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHH
Confidence 11000000000000000000 00000122222 23333333444433333445566777
Q ss_pred HHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc----chhHH
Q 008070 413 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV----RTPAM 488 (579)
Q Consensus 413 ~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 488 (579)
.++.+ .|++..+.++......++.+++.++.+++.||+++|+....+. .+..++++...+........ .....
T Consensus 309 ~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (481)
T TIGR00879 309 TIFEN-AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA--AGMAICLFVLGILGASFVTGSSKSSGNVA 385 (481)
T ss_pred HHHHH-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence 77766 7999988888888899999999999999999999997654332 11111111111111111111 02222
Q ss_pred HHHHHHHHhhhhhhhhhhhhhh-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008070 489 AVLCMACSQGSDAFSQSGLYSN-HQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
......+..+......+..... .+..|++.+++++|+.+...+++.+++|.+.|.+.+..+|...|++.+++++++.++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 386 IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred HHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHH
Confidence 2222222222222223333333 455677899999999999999999999999999999989999999988888887777
Q ss_pred HHHhhcCc
Q 008070 568 WNLFATGE 575 (579)
Q Consensus 568 ~~~~~~~~ 575 (579)
.+++.++.
T Consensus 466 ~~~~~~~~ 473 (481)
T TIGR00879 466 VYFFLPET 473 (481)
T ss_pred HheecccC
Confidence 66654443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-27 Score=245.62 Aligned_cols=343 Identities=16% Similarity=0.139 Sum_probs=243.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+..++...+..+++|+++||+|||++++.+.++.+++.+++++.+ +++.+++.|++.|++.+ ..+....++
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~ 131 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ--NIWQFLILRALLGLLGG-FVPNANALI 131 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhh-hHHhHHHHH
Confidence 456777788888899999999999999999999999999999999888888 89999999999999865 567788899
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.+++|+++|++++++...+..+|.+++|.+++.+.+..+||+.|++.+++.++..++.++..++++++.++.+..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (408)
T PRK09874 132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHM--- 208 (408)
T ss_pred HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHH---
Confidence 99999999999999999999999999999999999989999999999888777766666666654322111110000
Q ss_pred hcCCcccccccchhHHHHhhchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---hhhHHhHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWAL-IISHFCHNWGTFILLTWMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~ig~~ 442 (579)
......+++++++.. .+..++..........+++.|..+..+.... ..+.+..+..++.+++.+
T Consensus 209 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~ 276 (408)
T PRK09874 209 ------------REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAP 276 (408)
T ss_pred ------------HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234566665443 3333444444555667788888774332221 245555666778888899
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
+.|++.||+++++.+..+. ............. .+.+...+..+..+.+.....+..........+++.+|+.
T Consensus 277 ~~g~l~dr~g~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (408)
T PRK09874 277 RLGKLGDRIGPEKILITAL-------IFSVLLLIPMSFV-QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRI 348 (408)
T ss_pred HHHHHHhccccchhHHHHH-------HHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceee
Confidence 9999999999987654321 1111111111111 1222222222333333333333333333445677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
+|+.+....+|..+||.+.|.+.+..||+..|.+.+++.+++.++.+...+++
T Consensus 349 ~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 349 FSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred ehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998888877766554443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=242.66 Aligned_cols=336 Identities=11% Similarity=0.010 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
.....+..+++..++++++|+++||+|||++++.+.++++++.+++++++ +++.++++|+++|++.+...+....++.
T Consensus 53 ~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~Gi~~~~~~~~~~~~~~ 130 (413)
T PRK15403 53 APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--SMTQFLIARFIQGTSICFIATVGYVTVQ 130 (413)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888899999999999999999999999999999999998 8999999999999999877777788999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
|++|++++++++++...+..+|..+||++++.+.+..|||+.|++.+++.++..++.++..||+++++++....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~------ 204 (413)
T PRK15403 131 EAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSA------ 204 (413)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCh------
Confidence 99999999999999999999999999999999998899999999998887777665555556543321110000
Q ss_pred cCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l 447 (579)
......++.+++||.++...+..++.....+.+..+.|.++++.+|+++.+.++......++.+++..+.+++
T Consensus 205 -------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~ 277 (413)
T PRK15403 205 -------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARF 277 (413)
T ss_pred -------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011346778999999998888888888888888889999999889999999998888888888888888776
Q ss_pred hhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHH
Q 008070 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM-AVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS 526 (579)
Q Consensus 448 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 526 (579)
.++..+++...... .+..++.+........ ..+.++. .+...+.+.+... ..+........-....+|++.|+.
T Consensus 278 ~~~~~~~~~~~~~~--~~~~ig~~l~~~~~~~--~~~~~~~~~~~~~l~~~G~~~-~~p~~~~~al~~~~~~~G~a~a~~ 352 (413)
T PRK15403 278 VKDPTEPRFIWRAV--PIQLVGLALLIVGNLL--WPHVWLWSVLGTSLYAFGIGL-IFPTLFRFTLFSNNLPKGTVSASL 352 (413)
T ss_pred hccCCchhHHHHHH--HHHHHHHHHHHHHHHH--ccccHHHHHHHHHHHHHHHHH-HhHHHHHHHhccCCCCCcHHHHHH
Confidence 65544443322111 1111222211111111 1222221 2222222333222 222222211111233479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 008070 527 NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 527 ~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~ 564 (579)
+.....+..+++.+.|++.+. +-...|...+++..+.
T Consensus 353 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 389 (413)
T PRK15403 353 NMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVI 389 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHH
Confidence 999999999999999999887 4455555544444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=241.25 Aligned_cols=349 Identities=17% Similarity=0.168 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+...++..++.+++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 103 (377)
T PRK11102 26 GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLIYMRFLHGLAAAAASVVINAL 103 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888889999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.+++|+++|++++++...+..+|..++|++++.+.+..+||+.|++.+++.++..++..+..+++++++++.+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 179 (377)
T PRK11102 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFH---- 179 (377)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCC----
Confidence 9999999999999999999999999999999999999899999999988887776666665555543221111000
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
.+....+++++++++.++...+..++...+.+.+..+.|.++.+.+|+++.+.+++.....++.+++.++.+
T Consensus 180 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 251 (377)
T PRK11102 180 --------LRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINS 251 (377)
T ss_pred --------hHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000113456678888888877777777777777777888888888899999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
++.||+++|+....+... ..+ ........... ....+...+...+..+..............+..|+.+|++.++
T Consensus 252 ~l~~r~g~~~~~~~~~~~--~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 326 (377)
T PRK11102 252 RFVRRVGALNMLRFGLWI--QFI--MGIWLVVSALL-DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSL 326 (377)
T ss_pred HHHHHhCHHHHHHHHHHH--HHH--HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccchHHHHH
Confidence 999999999765433211 000 01111111111 1122222222222222222222222333344567889999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 526 SNTAGV-LAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 526 ~~~~~~-lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
.+.... ++..+++.+.+. .. .++...+...+++.+++.++.++..+++
T Consensus 327 ~~~~~~~~g~~~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSLA-PF-TSAWPMVWSMAFCSILSILFYLYASRPK 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHhc-cC-CChHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 877643 556666655432 22 2333344444555555555555444433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=239.27 Aligned_cols=347 Identities=18% Similarity=0.264 Sum_probs=270.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc-CHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~-~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
.++.....+...+.+++.|.+.||+|.|++..++.++..+-.+..+++.++ +++++++++++.|++.+ .+......++
T Consensus 52 ~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s 130 (417)
T COG2223 52 GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNAS 130 (417)
T ss_pred HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehccccccc
Confidence 455666666777778999999999999999999999999999999988632 34699999999999965 6788889999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC---cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG---WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g---wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.|+|+|++|.++|+.. ..++|..+..+++..++...+ |+.+..+..+..++..++.++...+.|+.....++...
T Consensus 131 ~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~- 208 (417)
T COG2223 131 FFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP- 208 (417)
T ss_pred ccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-
Confidence 9999999999999999 999999999999999999888 99999999998888888888888777653222111110
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
.+++.+++++..|.+.+.++..+.++.++..++|.|+++++|.++.++|.+.....+.+.+.++++
T Consensus 209 --------------~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~G 274 (417)
T COG2223 209 --------------AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLG 274 (417)
T ss_pred --------------hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhcc
Confidence 236668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
|+++||+|.+|...... ....++..+....................++..+...+......+.......+++.|.+.|
T Consensus 275 G~LsDR~Gg~rv~~~~f--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G 352 (417)
T COG2223 275 GWLSDRIGGRRVTLAVF--VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTG 352 (417)
T ss_pred chhhhhccchhHHHHHH--HHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhhhhHHHH
Confidence 99999999997654321 1111111111111100111122333333333333344444444455555556788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+...++.+|++.-|...|...+..| +...|++...+.+++.++......+
T Consensus 353 ~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 353 IVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999866 9999999999988888866555444
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=248.36 Aligned_cols=344 Identities=16% Similarity=0.073 Sum_probs=243.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh---hhccCHHHHHHHHHHHHhhhhchhhH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---AARIGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~---a~~~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
...+.++.....+...+++++.|+++||+|||++++++.++.+++.++.++ ....+++.+++.|++.|++.+...++
T Consensus 51 ~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 130 (417)
T PRK10489 51 TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTA 130 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888889999999999999999999888888777665542 11226788999999999999988899
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~ 361 (579)
..+++.+++|+++|+++.++.....++|..+||.+++.+.+..+|+|.|++.++..++..++.+. .|+.+++..+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 209 (417)
T PRK10489 131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPPQPREHP 209 (417)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCCcccccc
Confidence 99999999999999999999999999999999999999999889999999877776665544443 34332211110000
Q ss_pred HHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHH
Q 008070 362 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFA 441 (579)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~ 441 (579)
.+.....++.++++|.++...+..++... ...+..++|.|+++.+|.++.+.+++.+...++.+++.
T Consensus 210 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~ 276 (417)
T PRK10489 210 ------------LRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA 276 (417)
T ss_pred ------------hHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH
Confidence 00011235567788887766555544332 45667789999998889999999999999999999999
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchh
Q 008070 442 NMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAG 520 (579)
Q Consensus 442 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 520 (579)
++.+++.||.++++.+..+ .......+.+ ....+..+...++..+.+.......+.... ..+..|++.||
T Consensus 277 ~~~~~l~~~~~~~~~l~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T PRK10489 277 LTSGWLAHSARPGLLMLLS-------TLGSFLAVGL--FGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG 347 (417)
T ss_pred HHHHHhhhccCcchHHHHH-------HHHHHHHHHH--HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 9999999986655433221 1111111111 111223333222322222222333333333 34456778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 521 VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 521 ~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+++|+++....+|..+||.+.|.+.+..|+...+...+++.++..++....
T Consensus 348 ~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 348 RINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888887776655544444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-27 Score=243.47 Aligned_cols=337 Identities=17% Similarity=0.153 Sum_probs=235.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhh---hc---cCHHHHHHHHHHHHhhhhch
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA---AR---IGLPFLLIMRAFMGIGEGVA 278 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a---~~---~~~~~ll~~r~l~Gig~g~~ 278 (579)
...+.++.++.++...+.+++.|+++||+|||++++.+.++++++.+++.++ ++ .+++.+++.|+++|++.+..
T Consensus 50 ~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (399)
T PRK05122 50 AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129 (399)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhh
Confidence 4557888888889999999999999999999999999999888876665543 21 13567899999999999999
Q ss_pred hhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 279 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.+...+++.+++|+++|++++++...+..+|.++|+.+++.+.+.+||++.+++.+++.++..+.. ...++.++++
T Consensus 130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 205 (399)
T PRK05122 130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVPPVK--- 205 (399)
T ss_pred cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCCCCC---
Confidence 999999999999999999999999999999999999999999999999999887666544333222 1112111110
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 438 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ 438 (579)
.+ + .++++.++ .++.......+..+.......+++.|+.+ .|+ ...++......++.+
T Consensus 206 ~~--~---------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 263 (399)
T PRK05122 206 GE--R---------------LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFV 263 (399)
T ss_pred cc--c---------------hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHH
Confidence 00 0 01222222 12222223333445556667788888876 465 345666677788889
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
++.++.|++.||+++++....+. .+.......... ..+.+...+..++.+.+.....+.......+..++++
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 335 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSL-------LVEILGLLLLWL-APSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN 335 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHH-------HHHHHHHHHHHH-hccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999886543221 111111111111 1222222233333333333333333333455678899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
+|++.|+++....+|..+++++.|.+.+..||+..+++.+++.+++.++...+.+++
T Consensus 336 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (399)
T PRK05122 336 RGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRA 392 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999988888877766665543
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-27 Score=246.59 Aligned_cols=315 Identities=15% Similarity=0.183 Sum_probs=210.8
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHH--------HHHHHHHHHHhhhhchhhHHHHH
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~--------~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..++...+++++.|+++||+|||++++.+.+++.++.+++++++ +++ .+++.|+++|++.+...+....+
T Consensus 64 ~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 141 (434)
T PRK15075 64 AGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVP--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVY 141 (434)
T ss_pred HHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 33455567889999999999999999999999999999999998 665 46899999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE 357 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~--------~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~ 357 (579)
++|++|+++|++++++...+..+|..+++.+++.+. +.+|||++|++..+...+ . +. .++.+++.++
T Consensus 142 ~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~---~~-~~~~~~e~~~ 216 (434)
T PRK15075 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-I---FL-IRRSLEETEE 216 (434)
T ss_pred HHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-H---HH-HHHhcCCCHH
Confidence 999999999999999999998888888888877763 468999999875433211 1 11 1111222111
Q ss_pred hcHHHHhhhhcCCcccccccchhHHHHhhchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHH
Q 008070 358 LRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWAL-IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLT 436 (579)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~ 436 (579)
...++++ ......++...++++.+.. ++..++.....+....|.|.|+++.+|++..+.+++..+..++
T Consensus 217 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~ 286 (434)
T PRK15075 217 FLARKHR----------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVS 286 (434)
T ss_pred HHHhhhc----------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0000000 0001123344455555443 3334445556677888999999988899999999888888899
Q ss_pred HHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccC
Q 008070 437 MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIG 515 (579)
Q Consensus 437 ~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (579)
.+++.++.|+++||+++|+....+. ....+.....+............ ......+.+.............+..|
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p 361 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFT-----VLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMP 361 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC
Confidence 9999999999999999987544321 11111111111111111222111 11122222222222222233455678
Q ss_pred CCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCh
Q 008070 516 PRYAGVLLGLSNTAGV-LAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 516 ~~~~g~~~g~~~~~~~-lg~~ig~~l~g~l~~~~g~ 550 (579)
++.|+++.|+.+.+.. +++.++|.+.|++.|..|+
T Consensus 362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 362 AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 8999999999755555 4688899999999998775
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=246.73 Aligned_cols=331 Identities=18% Similarity=0.197 Sum_probs=232.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHH--------HHHHHHHHHHhhhhchhhHH
Q 008070 211 LCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLP--------FLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 211 l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~--------~ll~~r~l~Gig~g~~~~~~ 282 (579)
.....++...++.++.|+++||+|||++++++.++..++.+++++++ +++ .+++.|+++|++.+...+..
T Consensus 40 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~ 117 (394)
T TIGR00883 40 TFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLP--SYATIGIWAPILLLLARLIQGFSLGGEWGGA 117 (394)
T ss_pred HHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCC--ChhhhHHHHHHHHHHHHHHHHhhcccccccc
Confidence 34455566678889999999999999999999999999999999998 543 47899999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccCcchHHHHhhHHHHHHHHHHHhhhcCCCCC
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKE 354 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~--------~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~ 354 (579)
.+++.|++++++|++..++...+..+|.+++++++..+. +.++||+.|++.+++.++..++ ....+|+++.
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 196 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETPVF 196 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCChhH
Confidence 999999999999999999999999999999999887654 3578999998877665544332 2223332211
Q ss_pred ChhhcHHHHhhhhcCCcccccccchhHHHHhhchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHH
Q 008070 355 DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAP--VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVL 432 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~ 432 (579)
.+ ++++ ++....+.++.++++. ++...+..++.....+....++|.|+++.+|.+..+.+.+...
T Consensus 197 ~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 263 (394)
T TIGR00883 197 EK---AQEK----------HKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLML 263 (394)
T ss_pred HH---HHhc----------cccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 11 0000 0011123455666655 6777777777777778888899999988789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHhhhhhhhhhhhhhhc
Q 008070 433 PWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL-CMACSQGSDAFSQSGLYSNH 511 (579)
Q Consensus 433 ~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 511 (579)
..++.+++.++.|++.||+++|+...... ....+...............+.... ....+.+.............
T Consensus 264 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 338 (394)
T TIGR00883 264 SLILFFITIPLSGALSDRIGRRPVLIIFT-----VLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLP 338 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHH-----HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999987543211 1111111011111111122222222 22333333333333444455
Q ss_pred cccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 008070 512 QDIGPRYAGVLLGLS-NTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYI 562 (579)
Q Consensus 512 ~~~~~~~~g~~~g~~-~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~ 562 (579)
+..|++.|+++.|+. +....+|..++|.+.|.+.++.| |...++...++.+
T Consensus 339 ~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 339 ELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 567778899999985 45566788899999999999877 7766666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=247.43 Aligned_cols=316 Identities=24% Similarity=0.382 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
+.++.+...+...+..++.|+++||+|||++++++.++.+++.++..+++ +++.+++.|++.|++.+...+...+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i~ 111 (352)
T PF07690_consen 34 IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS--NFWLLLIARFLLGIGSGFFSPASNALIA 111 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh--hHHHHhhhcccccccccccccccccccc
Confidence 56677778888899999999999999999999999999999977766766 7889999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
|++|+++|++++++...+..+|.+++|++++++.+.++||+.|++.+++.++..++...+.++++++....++.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--- 188 (352)
T PF07690_consen 112 DWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE--- 188 (352)
T ss_dssp HCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---
T ss_pred ccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc---
Confidence 99999999999999999999999999999999998899999999999998887765444444333322221111110
Q ss_pred cCCcccccccch-hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hhhhhHHhHHHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVI-PWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN-LTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 368 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s-~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
.+.+.+.. .++.+++++.+|.+.+..++..+.......++|.|+.+.+|++ ..+.+.+..+..+.++++.++.+
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (352)
T PF07690_consen 189 ----SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAG 264 (352)
T ss_dssp ------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111112 2666778887776666666666677888999999978879999 88999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
++.||+++++... ..........+.+...... +..+.....++.+.+.....+.......+..|++++|++.|
T Consensus 265 ~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g 338 (352)
T PF07690_consen 265 RLSDRFGRRRRLL------IAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFG 338 (352)
T ss_dssp HHHHHTTCHHHHH------HHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHH
T ss_pred HHHHHcCcHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998865332 1122222222222222222 22333334444444443344444444556677799999999
Q ss_pred HHHHHHHHHHHHHH
Q 008070 525 LSNTAGVLAGVFGT 538 (579)
Q Consensus 525 ~~~~~~~lg~~ig~ 538 (579)
+.+...+++..++|
T Consensus 339 ~~~~~~~~~~~igP 352 (352)
T PF07690_consen 339 LFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=249.13 Aligned_cols=362 Identities=15% Similarity=0.149 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhh---------hc-cCHHHHHHHHHHHHhhh
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA---------AR-IGLPFLLIMRAFMGIGE 275 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a---------~~-~~~~~ll~~r~l~Gig~ 275 (579)
....++.+..+++..++++++|+++||+|||++++++.+++.++.++++++ ++ ..++.++++|+++|++.
T Consensus 55 ~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (479)
T PRK10077 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV 134 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhH
Confidence 455778888899999999999999999999999999999999998887763 11 12567889999999999
Q ss_pred hchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 276 GVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI--------QKFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 276 g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~--------~~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
|...+...++++|++|+++|++++++.+.+..+|.++++++++.+. +.+|||+.|++.+++.++..+. .++
T Consensus 135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~ 213 (479)
T PRK10077 135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYF 213 (479)
T ss_pred hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHc
Confidence 9999999999999999999999999999999999999988876553 3579999999887777665544 445
Q ss_pred hcCCCCCChhh-cHHHHh---hhhcCCcccccccchhHHHHhh-----chHHHHH---------HHHHHHHHHHHHHHHH
Q 008070 348 AYSSPKEDPEL-RAEEKR---HILGGSISKEAVSVIPWKLILS-----KAPVWAL---------IISHFCHNWGTFILLT 409 (579)
Q Consensus 348 ~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~---------~l~~~~~~~~~~~~~~ 409 (579)
.||+|+..... +.++.. ........ ........+..++ .+.++.. ....+....+.+....
T Consensus 214 l~~s~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (479)
T PRK10077 214 VPETPRYLMSRGKQEQAEGILRKIMGNTL-ATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLY 292 (479)
T ss_pred CCCCcHHHHHcCCHHHHHHHHHHHcCChh-HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHH
Confidence 66665321000 011100 00000000 0000001111111 0111100 1111111222334445
Q ss_pred HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 008070 410 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA 489 (579)
Q Consensus 410 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (579)
+.|.+..+ .|++.....+.....++..+++.++.+++.||+|+|+++..+. ....++.++... .........+..
T Consensus 293 ~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~--~~~~v~~~~l~~--~~~~~~~~~~~~ 367 (479)
T PRK10077 293 YAPEIFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA--LGMAIGMFSLGT--AFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhH--HHHHHHHHHHHH--HHhcCcccHHHH
Confidence 66777766 7888877777777788889999999999999999997655432 111121111111 111111111222
Q ss_pred HHHHHHHhhhhhhhhhh-hhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------hcCChHHHHHHHHHHHH
Q 008070 490 VLCMACSQGSDAFSQSG-LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL------QRGSWDDVFKVAVVLYI 562 (579)
Q Consensus 490 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~------~~~g~~~~~~~~~~~~~ 562 (579)
......+.+......+. .....+..|++.|++++|+.+....++.++++.+.+.+. +..++...|++.+++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 22222222222222223 333455567789999999999999999999977776554 56778888888887777
Q ss_pred HHHHHHHHhhcC
Q 008070 563 IGTLVWNLFATG 574 (579)
Q Consensus 563 l~~~~~~~~~~~ 574 (579)
+++++.+++.++
T Consensus 448 ~~~~~~~~~~~e 459 (479)
T PRK10077 448 LAALFMWKFVPE 459 (479)
T ss_pred HHHHHHHhcccc
Confidence 776665555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=239.82 Aligned_cols=335 Identities=15% Similarity=0.185 Sum_probs=230.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH---hhh---ccCHHHHHHHHHHHHhhhhch
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---VAA---RIGLPFLLIMRAFMGIGEGVA 278 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~---~a~---~~~~~~ll~~r~l~Gig~g~~ 278 (579)
.+.+.++.+..++...+.++++|+++||+|||++++.+.++..++.+... +.+ ..+++.+++.|+++|++.+..
T Consensus 50 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (392)
T PRK12382 50 NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999999999999888776654332 211 116788999999999999998
Q ss_pred hhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 279 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.+...+++.+++|+|+|++++++.+.+..+|.++||++++++.+.+||++.+.+..++.++.... ....|+.++++++
T Consensus 130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 207 (392)
T PRK12382 130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF-NGTVRKVPAHAGE- 207 (392)
T ss_pred HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHhccCCCCCccc-
Confidence 99999999999999999999999999999999999999999999999998877655443332221 1111221111000
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 438 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ 438 (579)
+ .+.++.++ .++...+..++..........+.|.|+++ .+++. .++......++.+
T Consensus 208 ----~---------------~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~ 263 (392)
T PRK12382 208 ----R---------------PSLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFV 263 (392)
T ss_pred ----C---------------chHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHH
Confidence 0 01111111 11222222233344555667788888877 46553 4556666777888
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
+++++.|++.||+++++....+. .+..++ ..+.... .+.........+.+.+.....+.......+..++++
T Consensus 264 ~~~~~~g~l~~r~g~~~~~~~~~--~~~~~~-----~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 335 (392)
T PRK12382 264 LMRVLFGWMPDRFGGVKVAIVSL--LVETVG-----LLLLWLA-PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV 335 (392)
T ss_pred HHHHHHHHHHHhcCCCeehHHHH--HHHHHH-----HHHHHHc-ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH
Confidence 99999999999999987755332 111111 1111111 222222222223333222222333333456678899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+|++.|+.+....+|..++|.+.|.+.++.||+..|.+.+++.+++.++.+...+
T Consensus 336 ~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (392)
T PRK12382 336 RGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSFR 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999988888777665543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=246.80 Aligned_cols=333 Identities=14% Similarity=0.141 Sum_probs=241.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcc
Q 008070 210 LLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289 (579)
Q Consensus 210 ~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~ 289 (579)
++.....+...++.+++|+++||+|||++++.+.++.+++.+++++++ +++.+++.|+++|++.+...+...+++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~ 126 (471)
T PRK10504 49 MVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG--TLNELLLARVLQGVGGAMMVPVGRLTVMKI 126 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555566677789999999999999999999999999999988888 899999999999999999999999999999
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh-----
Q 008070 290 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR----- 364 (579)
Q Consensus 290 ~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~----- 364 (579)
+|+++|++++++.....++|..+||.+++.+.+..|||+.|++...+..+..++.....|+.+.+..+.+.....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 206 (471)
T PRK10504 127 VPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVG 206 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777666666655555443222111100000
Q ss_pred ------hhhcCC--------------------------cccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 365 ------HILGGS--------------------------ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMP 412 (579)
Q Consensus 365 ------~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p 412 (579)
...+.. +.....+..+. ++++||.++..++..++..........+.|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 285 (471)
T PRK10504 207 MATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTP 285 (471)
T ss_pred HHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00111122233 378899999888888888888777778899
Q ss_pred HHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHH
Q 008070 413 TYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAM-AVL 491 (579)
Q Consensus 413 ~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 491 (579)
.|++..+|.++.+.+++.....++.+++.++.+++.||+++|+.+..+. ....+....+.........+. ...
T Consensus 286 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (471)
T PRK10504 286 VFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT------LGLALVSLLFMLVALLGWYYLLPFV 359 (471)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH------HHHHHHHHHHHhccccccHHHHHHH
Confidence 9998878999999999998888888888899999999999987644321 111111111111111122222 222
Q ss_pred HHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 492 CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
.++.+.+.............+.++++.+|.++|+.++...+|..+|+.+.|.+.+..|+.
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222223332233333333445678899999999999999999999999999999887664
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=254.20 Aligned_cols=330 Identities=18% Similarity=0.199 Sum_probs=247.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
+.++.....++..++.++.|+++||+|||++++++.++..++.+++++++ +++.+++.|+++|++.+...+...+++.
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~G~~~~~~~~~~~~~i~ 116 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELMIIFRVIQGFGGGPLIPLSFSTLL 116 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34566667777888889999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH----
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK---- 363 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~---- 363 (579)
|++|+++|+++++++..+..+|..+||.+++++.++++||+.|++.+++.++..++.++..++++++..+..+...
T Consensus 117 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~ 196 (485)
T TIGR00711 117 NIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLL 196 (485)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888777766666665554332211100000
Q ss_pred ---------hhhhcCC--------------------------cccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 008070 364 ---------RHILGGS--------------------------ISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILL 408 (579)
Q Consensus 364 ---------~~~~~~~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 408 (579)
....... +.+.+.+..+ .++++++.++...+..++..+..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (485)
T TIGR00711 197 SVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFTIGCVYMSLLGLGLYGSF 275 (485)
T ss_pred HHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000111112 246788888888888888888888888
Q ss_pred HHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHH--hhccch-
Q 008070 409 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ--LSHVRT- 485 (579)
Q Consensus 409 ~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~- 485 (579)
.++|.|+++.+|+++.+++++.....++.+++.++.|++.||+++|+....+ ..+...+..+.. ......
T Consensus 276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~~ 348 (485)
T TIGR00711 276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG-------LILYAVGFYWRAFTFTPDTPF 348 (485)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH-------HHHHHHHHHHHhccCCCCCCH
Confidence 9999999998999999999999999999999999999999999998653322 111111111111 111222
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 486 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
........+.+.+......+......+..+++++|++.|+.++...+|+.+|+.+.|.+.++
T Consensus 349 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 349 LAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333334443333444444455667889999999999999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-26 Score=243.56 Aligned_cols=335 Identities=14% Similarity=0.174 Sum_probs=238.3
Q ss_pred hhhhhhhhhhhhc-----CCcHH-HHHHHHHHHHHHHHHHhhh-ccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcC
Q 008070 221 MDRIVGGIWADKF-----GGKPV-LGFGVIWWSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS 293 (579)
Q Consensus 221 l~~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~ll~~~a~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~ 293 (579)
+..+++|+++||+ |||+. ++++.++.+++.+++++.+ ..+++.+.+.+++.|++.+...++..+++.|++|++
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 4558999999999 99885 6688887878877777753 125778899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcc
Q 008070 294 ERSRSLAFVYSGMYLGSVTGLAVSPILIQ-KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSIS 372 (579)
Q Consensus 294 ~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (579)
+|+++.++...+..+|.++++.++.++.+ ..|||..|++.+++.++..+..++ .+|+++..++.+..
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~~~~~~~----------- 207 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTIPVPKTL----------- 207 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCccccccccch-----------
Confidence 99999999999999999999999999998 579999999998877766555444 45433211100000
Q ss_pred cccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhH-HHHHHHHHHHHHHHHHhhhh
Q 008070 373 KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCV-LPWLTMAVFANMGGWIADTL 451 (579)
Q Consensus 373 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~-~~~~~~~ig~~~~g~l~dr~ 451 (579)
++....+++++++++..|...+..++..........+.+.|+.+.+|++..+.+++.. ...++.+++.++.|++.||+
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~ 286 (491)
T PRK11010 208 -EQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL 286 (491)
T ss_pred -hhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001134666777887777766666666666677778888887778999999999874 55578999999999999999
Q ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHH
Q 008070 452 VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG 530 (579)
Q Consensus 452 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 530 (579)
++++...... ....+.. ..+...... ....+.......+ ....+...........+..+++..++.+|+.+...
T Consensus 287 g~~~~l~i~~--~l~~l~~--l~~~~l~~~-~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~ 361 (491)
T PRK11010 287 SLFRALMIFG--ILQGVSN--AGYWLLSIT-DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALS 361 (491)
T ss_pred hHHHHHHHHH--HHHHHHH--HHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9886433211 1111111 111111111 1222222211222 11111111222223344467778899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 531 VLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 531 ~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.+|..+++++.|.+.|..||...|.+.+++.+++.++....++
T Consensus 362 ~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 362 AVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888877766653
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=249.02 Aligned_cols=337 Identities=14% Similarity=0.167 Sum_probs=236.3
Q ss_pred hhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHhhhhchhhHHHHHHhcccCcCchhHH
Q 008070 220 NMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLI-MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRS 298 (579)
Q Consensus 220 ~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~-~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~ 298 (579)
.++.+++|+++||+|||++++.+.++.+++.+++++++ +++.+++ .|++.|++.+...+...+++.++++ ++|+++
T Consensus 68 ~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a 144 (455)
T TIGR00892 68 YAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS--NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLA 144 (455)
T ss_pred HHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHH
Confidence 34448899999999999999999999999999999988 7777764 5799999999877778888999995 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH-HHHhhhhcCCcc-----
Q 008070 299 LAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-EEKRHILGGSIS----- 372 (579)
Q Consensus 299 ~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----- 372 (579)
+++...+..+|..++|++++.+.+.+|||++|++.+++.++..+..++..++.+.+.....+ ++.........+
T Consensus 145 ~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (455)
T TIGR00892 145 NGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKS 224 (455)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccc
Confidence 99999999999999999999999999999999999988776655544443322211000000 000000000000
Q ss_pred --cccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh
Q 008070 373 --KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT 450 (579)
Q Consensus 373 --~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr 450 (579)
++.....++ .++++|.++...+..++...+.+....++|.|+++ .|++..+++++.++.+++.++++++.|++.||
T Consensus 225 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 225 TAEKINRFLDF-SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred hhhhhhhhcch-HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 000001112 46788999988888888888888888899999987 79999999999999999999999999999997
Q ss_pred hh--ccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHH
Q 008070 451 LV--SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNT 528 (579)
Q Consensus 451 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 528 (579)
.. +++.... ..+..+......+... ..+.+.+.+..+..+.+.............+.++++++++++|+++.
T Consensus 303 ~~~~~~~~~~~-----~~~~~~~~l~~ll~~~-~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 376 (455)
T TIGR00892 303 KWIRPHVQYLF-----SFALLFNGLTHLLCAL-AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTI 376 (455)
T ss_pred cccCHHHHHHH-----HHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHH
Confidence 42 2322111 1111111111111111 12222333333334433333333333344555788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHH
Q 008070 529 AGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 529 ~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~l~~~~ 567 (579)
...+|.++||.++|.+.+.. +|+..|++.+++.+++.+.
T Consensus 377 ~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 377 VECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999999999999999975 5999998888877766553
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=236.87 Aligned_cols=332 Identities=15% Similarity=0.057 Sum_probs=237.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...++++.+...++..+++++.|+++||+|||+++..+.++.+++.+++++++ +++.+++.|+++|++.+...+...+
T Consensus 40 ~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~ 117 (381)
T PRK03633 40 TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMV--GFWSWLAWRFVAGIGCAMIWVVVES 117 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888999999999999999999999999999999999999999998 8999999999999999998898888
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
.+.+..++++|+++++++..+.++|..+||.+++.+.+...|... +..+.+......+ ++. +.+++..++ +
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~-~----- 188 (381)
T PRK03633 118 ALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-WVTGLVLAAILPL-LFT-RILNQQAEN-H----- 188 (381)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHHHH-HHh-cccCCCCCC-C-----
Confidence 888999999999999999999999999999999998775433333 3322222221211 121 111111000 0
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
+..++++.+++|.++......+...........++|.|+++ .|.++.+.+.+.+...++.++++++.
T Consensus 189 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 189 ------------DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPI 255 (381)
T ss_pred ------------CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 00124456778887765554555555556667789999987 69999999999999899999999999
Q ss_pred HHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 445 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
|++.||+++|+.+..+. ....++ ..... . . .........++.+.....+.......+..++++++.+.+
T Consensus 256 g~l~dr~~~~~~l~~~~--~~~~~~-----~~~~~-~-~--~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 324 (381)
T PRK03633 256 GRLADRFGRLLVLRVQV--FVVILG-----SIAML-S-Q--AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQ 324 (381)
T ss_pred HHHHHHcCcHHHHHHHH--HHHHHH-----HHHHh-h-h--HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999999986544321 111111 11111 1 1 111112222222222233333333455566777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..+...++|.++||.+.|++.|+.|+...|.+.+++.++..++.+..
T Consensus 325 ~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 371 (381)
T PRK03633 325 ALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK 371 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999888887666555444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-26 Score=238.35 Aligned_cols=340 Identities=14% Similarity=0.101 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...++++.....+...+.+++.|+++||+|||++++++.++.+++.+++++.+ +++.+++.|+++|++.+...++..+
T Consensus 45 ~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~ 122 (400)
T PRK11646 45 AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--EPWLLWLSCILSGLGGTLFDPPRTA 122 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777789999999999999999999999999999999988 8999999999999999988999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
++.+++|+++|++++++......+|..+||++++++. .++||+.|++.+++.++..++..+..|+.++++ . .++
T Consensus 123 ~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~~--- 196 (400)
T PRK11646 123 LVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLST-V-RTP--- 196 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccc-c-chh---
Confidence 9999999999999999999999999999999999998 689999999988777666555444444321110 0 000
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
....++.++++|.++...+..+...........++|.|+++. +.++.+.+++.+...++..++....
T Consensus 197 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~ 263 (400)
T PRK11646 197 ------------VREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPI 263 (400)
T ss_pred ------------hHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHH
Confidence 012356678888887766655555444444566889999885 4477888888877777666555555
Q ss_pred HHHhhh-hhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 445 GWIADT-LVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 445 g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
+++.|| ++.++... .+..+......+... .+..+.. +.....+.+.....+.......+..|++++|++
T Consensus 264 ~~~~~~r~~~~~~~~-------~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~ 334 (400)
T PRK11646 264 ARWSEKRFRLEHRLM-------AGLLIMSLSMFPIGM--VSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSY 334 (400)
T ss_pred HHHHHHhcchhHHHH-------HHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhh
Confidence 555554 44443221 111111111111111 1222222 222222222222223333334455788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---C-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRG---S-WDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~---g-~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+|+.+....+|..+||.+.|.+.|.. + ....++..+++.+++.+......++
T Consensus 335 ~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (400)
T PRK11646 335 MGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFSQ 390 (400)
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999974 2 3556666666666665555443443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-26 Score=235.97 Aligned_cols=325 Identities=14% Similarity=0.121 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.++..+...++.+++|+++||+|||++++.+.++..++.+++++++ +++.+++.|+++|++.+...+...++
T Consensus 41 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~ 118 (401)
T PRK11043 41 SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--SAAQLLVLRFVQAVGVCSAAVIWQAL 118 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3567777888888889999999999999999999999999999999999988 89999999999999988888888899
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|+++++++++..+.......+|..++|.+++++.+.+|||+.|++.+++.++..++.++..++.++++ + ++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~---- 191 (401)
T PRK11043 119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKARK-Q--SQ---- 191 (401)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCccc-c--ch----
Confidence 9999999999999999999999999999999999999999999999988887776665554433322111 0 00
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
...+++++++++.++...+...+.....+.+..+.|.++++ +|+++.+.++......++.+++.++.+
T Consensus 192 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~ 259 (401)
T PRK11043 192 -----------DALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGGYGCR 259 (401)
T ss_pred -----------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01245667888888776666666666667777888988876 799999999988888888999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
++.||+++++...... ....+....+...........+.... ....+.+. +...+.......+..|+++|++.|
T Consensus 260 ~l~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g 334 (401)
T PRK11043 260 AALQKWGGEQLLPWLL----VLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAAN-GAIYPIVVAQALRPFPQATGKAAA 334 (401)
T ss_pred HHHHHcCHHHHHHHHH----HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCcccChHHHH
Confidence 9999999886543221 11111111111111111222222222 22233333 333333333332334678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 556 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~ 556 (579)
+.+.....++.+++.+.|.+.+.......+.+
T Consensus 335 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 366 (401)
T PRK11043 335 LQNTLQLGLCFLASLLVSALISTPLLTTGSVM 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 99999999999999999999886555544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=238.51 Aligned_cols=341 Identities=12% Similarity=0.024 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
+.+.++.....+...+..+++|+++||+|||++++++.++++++.+++++.. +. ++.|+++|++.+...|+..++
T Consensus 38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~--~~---~~~r~l~G~~~a~~~pa~~a~ 112 (393)
T PRK11195 38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI--HP---LLAYGLVGIGAAAYSPAKYGI 112 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888889999999999999999999999999999988887776 43 788999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|++|+++|++++++......+|.++||.+++++.+. .|+..+.+.+.+.++..+ ..+..|+.+.+.++.+.+....
T Consensus 113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ 190 (393)
T PRK11195 113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAAL-FNLFIPRLGARRPGQSWNPIAL 190 (393)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHhcCCCCcccccccCCCHHHH
Confidence 99999999999999999999999999999999999885 477777766655443333 3344454432211110000000
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
. ......++.++++|.+....+..++...........+|.|+++.+|.++.+.|++.....++.+++.++.+
T Consensus 191 ~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~ 262 (393)
T PRK11195 191 L--------RDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAA 262 (393)
T ss_pred H--------HHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00012245677888877665555555555566667778888888999999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH-HHHhhhhhhhhhhhhhhccccCCC-c-hhHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPR-Y-AGVL 522 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~ 522 (579)
++.||.++++....+. ..+. ..... ...+..+...... ..+.+..... +......++.+|+ . +|++
T Consensus 263 ~l~~~~~~~~~~~~g~-----~~~~---~~~~~--~~~~~~~~~~~~~~~~G~~~g~~~-~~~~~~~q~~~~~~~~~g~~ 331 (393)
T PRK11195 263 RLVTLETVLRVLPAGI-----LMGL---VVLLM--ALQHSLLPAYPLLILIGALGGFFV-VPMNALLQHRGHVLVGAGHS 331 (393)
T ss_pred HHhcCCcccchHHHHH-----HHHH---HHHHH--HHHhHHHHHHHHHHHHHHhhhhhh-hhHHHHHHhhCcccccchhH
Confidence 9999988776443221 1111 11111 1122233232333 3333333333 3333433445554 3 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.++.+...+++..++..+.+.+ +..|.+..+.+.+...+++..+.+.++.
T Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK11195 332 IAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRW 381 (393)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 5678888888877777777666665544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=245.65 Aligned_cols=348 Identities=14% Similarity=0.071 Sum_probs=237.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
.+...++.++.+++..++.++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+...+
T Consensus 126 ~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~G~~~~~~~~~~~~ 203 (505)
T TIGR00898 126 AWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRLLVGMGIGGIWVQAVV 203 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhccchHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC-----hhhc
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED-----PELR 359 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~-----~~~~ 359 (579)
++.|++|+++|+++.++...+..+|.+++++++..+.+ ||+.|++.+++.++..+.. ++.||+|+.. .+..
T Consensus 204 ~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a 279 (505)
T TIGR00898 204 LNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEA 279 (505)
T ss_pred HhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHH
Confidence 99999999999999999999999999999999877654 9999999988877766555 4566665311 0000
Q ss_pred HHHHhhhh--c-------------CCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 008070 360 AEEKRHIL--G-------------GSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT 424 (579)
Q Consensus 360 ~~~~~~~~--~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 424 (579)
.+...... . .....+......+++++++|.++...+...+..+........++.+..+ ++.+..
T Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 358 (505)
T TIGR00898 280 LKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGN-LGGNIY 358 (505)
T ss_pred HHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCChH
Confidence 00000000 0 0000001112467788889988877766655554444333334444433 455433
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhh
Q 008070 425 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 504 (579)
Q Consensus 425 ~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (579)
......++..+++.++.+++.||+|||+.+.... .+......+.........+.......++.+......
T Consensus 359 ---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (505)
T TIGR00898 359 ---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASL-------LLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAF 428 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3334556778888999999999999986543221 111111111111111211222222223322222233
Q ss_pred hhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 505 SGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 505 ~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..... ..+..|++.|++++|+.++...+|++++|.+.+ + +..++...+.+.+++.+++.++.+++
T Consensus 429 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 429 QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcC
Confidence 33333 445567789999999999999999999999999 4 34456667777777766666655544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-26 Score=235.14 Aligned_cols=336 Identities=15% Similarity=0.069 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHH-HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVL-GFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l-~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
.++++.+...+...+..++.|.+.||+|+|+.+ +.+.++.+++.++.++++ +++.+++.+.+.|...+...+...++
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 129 (393)
T PRK15011 52 MVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWNR--NYFVLLFVGVFLSSFGSTANPQMFAL 129 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345554444444444444544449999999875 455666667777788888 78777666655555555678888888
Q ss_pred HhcccCcCch--hHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH
Q 008070 286 LSKWIPVSER--SRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363 (579)
Q Consensus 286 i~~~~~~~~r--~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~ 363 (579)
+.++.++++| +...++...+.++|.++||++++++.+++|||+.|++.+++.++..++.++..||.+++++.... +.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 208 (393)
T PRK15011 130 AREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG-TL 208 (393)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc-cc
Confidence 8888876655 34568889999999999999999999999999999999888877777666666665433221100 00
Q ss_pred hhhhcCCcccccccchhHHHHhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHH
Q 008070 364 RHILGGSISKEAVSVIPWKLILSK-APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~ 442 (579)
+ . ..++ +..+......++.......+..+.|.|+++.+|+++.+.+.+.....++.+++.+
T Consensus 209 ~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~ 270 (393)
T PRK15011 209 E---------------A---PRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTML 270 (393)
T ss_pred c---------------c---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0111 2223333333444445555667899999888999999999888877788888999
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
+.|++.||+++|+....+. . ...+ .+..... .+..+...+...+.....+...........+..|+++|++
T Consensus 271 ~~G~l~dr~g~~~~~~~~~--~---~~~~--~~~~~~~--~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~ 341 (393)
T PRK15011 271 IAGYFAKRLGKRFLMRVAA--V---AGVC--FYAGMLM--AHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSA 341 (393)
T ss_pred HHHHHHHHhChHHHHHHHH--H---HHHH--HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchH
Confidence 9999999999987543221 1 1111 1111111 1222222222222211111111222233344556779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
.++++...++|..++|.+.|.+.+..||+..+.+.+++.+++.++.+..+
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988888888777666553
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=233.47 Aligned_cols=325 Identities=14% Similarity=0.095 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.+...+...++.++.|+++||+|||++++++.++..++.+++.+++ +++.+++.|+++|++.+...+...+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~i 116 (392)
T PRK10473 39 QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--TSSLFLAGRFLQGIGAGCCYVVAFAIL 116 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456666777778888899999999999999999999999999999999988 888999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHI 366 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~ 366 (579)
.|++|+++|++++++......+|.+++|++++.+.+..+|++.|++.+++.++..++.+...+|++++.++.+..
T Consensus 117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 191 (392)
T PRK10473 117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAASS----- 191 (392)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCccc-----
Confidence 999999999999999999999999999999999888899999999998887777666666555543321110000
Q ss_pred hcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGW 446 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~ 446 (579)
.....++.++++.++...+...+.......+..+.|.++.+.+|+++.+.+.+.+...++.+++.++.++
T Consensus 192 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (392)
T PRK10473 192 ----------KPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPF 261 (392)
T ss_pred ----------hHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345677888776666555555555566667788888888999999999999999999999999999
Q ss_pred HhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHH
Q 008070 447 IADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLS 526 (579)
Q Consensus 447 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 526 (579)
+.||+++|+....+. .+...+........... ...........+............ ..+.++++ |..
T Consensus 262 l~~r~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~---g~~ 328 (392)
T PRK10473 262 ALGIFKPRTLMLTSQ-------VLFLAAGITLALSPSHA-VSLFGITLICAGFSVGFGVAMSQA--LGPFSLRA---GVA 328 (392)
T ss_pred HHHhcCHHHHHHHHH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHH--hccCcccc---cHH
Confidence 999999987544321 11111111111111111 111111111222111111111111 11222232 333
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008070 527 NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 561 (579)
Q Consensus 527 ~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 561 (579)
.....++..+++.+.+++.+..|+.......+.+.
T Consensus 329 ~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 329 SSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 44456777778888888888777765555444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-26 Score=231.40 Aligned_cols=316 Identities=26% Similarity=0.420 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
.....+.....+...+..++.|+++||+|||+.++++.++..++.+++.+.+ +++.+++.|++.|++.+...+...++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~ 111 (352)
T cd06174 34 SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS--SLWLLLVGRFLLGLGGGALYPAAAAL 111 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHcccccccHhHHHH
Confidence 4567777888888899999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|++|+|+|++++++......+|..++|.+++.+.+..+|++.+++.+++.++..++..+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 174 (352)
T cd06174 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL----------------- 174 (352)
T ss_pred HHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999989999999998888777666554432
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
|.++...+..++..........+.|.+..+.+|.+..+.+.......++..++.++.+
T Consensus 175 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 232 (352)
T cd06174 175 ----------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232 (352)
T ss_pred ----------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888899999999997799999999999999999999999999
Q ss_pred HHhhhhhccC-cchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 446 WIADTLVSKG-LSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 446 ~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
++.||+++|+ ....+. .+.......... ..+...........+.+.............+..+++++++.+|
T Consensus 233 ~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (352)
T cd06174 233 LLSDRLGRRRLLLLIGL-------LLAALGLLLLAL-APSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG 304 (352)
T ss_pred HHHHHHHhhhHHHHHHH-------HHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHH
Confidence 9999999986 443221 111111111111 1122223333333344433333444444555567799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
+.+....++..+++.+.|.+.+..+|+..+.+.+++.+++.++...
T Consensus 305 ~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 305 LFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999999999999999999999999999998888776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=243.41 Aligned_cols=357 Identities=15% Similarity=0.140 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc----CHHHHHHHHHHHHhhhhchhhHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI----GLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~----~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
...++.+...++..++.+++|+++||+|||+++.++.+++.++.++++++++. +++.++++|+++|++.+...+..
T Consensus 57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 136 (502)
T TIGR00887 57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLS 136 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHH
Confidence 34677778888899999999999999999999999999999999998887621 16789999999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------ccCcchHHHHhhHHHHH
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-----------------------KFGWPSVFYSFGSLGSI 339 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-----------------------~~gwr~~f~i~~~~~li 339 (579)
..++.|++|+++|++++++......+|.++++.++..+.. .++||+.|.+.++..++
T Consensus 137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i 216 (502)
T TIGR00887 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL 216 (502)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988876532 24799999877666655
Q ss_pred HHHHHHhhhcCCCCC---ChhhcHHHH---hhhhc----CC-cc------cccccchhHHHHhhc---hHH----HHHHH
Q 008070 340 WFALWLKKAYSSPKE---DPELRAEEK---RHILG----GS-IS------KEAVSVIPWKLILSK---APV----WALII 395 (579)
Q Consensus 340 ~~~l~~~~~~~~~~~---~~~~~~~~~---~~~~~----~~-~~------~~~~~~~~~~~l~~~---~~~----~~~~l 395 (579)
.++ ..+..||+|+- +.+.+++.. ..... +. .+ +++....++++++++ ++. +...+
T Consensus 217 ~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (502)
T TIGR00887 217 ALY-FRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAG 295 (502)
T ss_pred HHH-HHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHH
Confidence 443 44566887752 111101000 00000 00 00 000111346666643 122 21222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhH------------HhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHH
Q 008070 396 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL------------FCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463 (579)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~------------~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~ 463 (579)
..++..+.+++...+.|.++++ .|++....+. ...+..++.+++.++.++++||+|||+.+..+.
T Consensus 296 ~~~~~~~~~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~-- 372 (502)
T TIGR00887 296 SWFLLDIAFYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGF-- 372 (502)
T ss_pred HHHHHHHHHHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH--
Confidence 3334444556667788998876 6886543221 123334566678889999999999997654332
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
.+..+++.+.++.. ............++....+..+..........+..|++.|+++.|+.+.+..++++++|.+.++
T Consensus 373 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 450 (502)
T TIGR00887 373 FILTVLFFVLGFAY--NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY 450 (502)
T ss_pred HHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 11111111111110 0001111111111111111111222222223555677999999999999999999999999999
Q ss_pred HHhc----------CChHHHHHHHHHHHHHHHHHHH
Q 008070 544 ILQR----------GSWDDVFKVAVVLYIIGTLVWN 569 (579)
Q Consensus 544 l~~~----------~g~~~~~~~~~~~~~l~~~~~~ 569 (579)
+.+. .++...|.+.+++.+++.++.+
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 486 (502)
T TIGR00887 451 LAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTL 486 (502)
T ss_pred hhccccccccccccccchHHHHHHHHHHHHHHHHhe
Confidence 9884 3455677777777777655543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=230.08 Aligned_cols=322 Identities=14% Similarity=0.132 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.....+...++.+++|+++||+|||++++++.++..++.+++.+++ +++.+++.|++.|++.+...+....+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~~~~~ 120 (394)
T PRK11652 43 GAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH--SLTVLIAASAIQGLGTGVGGVMARTL 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3556677778888889999999999999999999999999999999999888 89999999999999999888888889
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|+++++++++++++...+..+|..++|++++.+.+..|||+.|++.+++.++..++..+..||+++.+++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 195 (394)
T PRK11652 121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRTR----- 195 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchhH-----
Confidence 999999999999999999999999999999999999989999999998877776655555555554332211110
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
....++.++++|.++...+..+........+..+.+.++++.+|+++.+.+++.....++.+++.++.+
T Consensus 196 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 264 (394)
T PRK11652 196 -----------VLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 264 (394)
T ss_pred -----------HHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113466678888888777666666666666677788899888899999999988888888888999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL 525 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 525 (579)
++.||.+++.. . .......................+.......+.+.......+.......+..|+++|++.++
T Consensus 265 ~l~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 338 (394)
T PRK11652 265 RPNKRFSTLMW--Q----SVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYLAGTAGAL 338 (394)
T ss_pred HHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 99999873311 1 11111111111111111111122222222222222223334444443334456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 526 SNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 526 ~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
.+....+|..+++.+.|.+.+...+.
T Consensus 339 ~~~~~~lg~~~~~~~~~~~~~~~~~~ 364 (394)
T PRK11652 339 LGGLQNIGSGLAALLSAMLPQTGQFS 364 (394)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHH
Confidence 99999999999999999887664444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=245.30 Aligned_cols=347 Identities=15% Similarity=0.141 Sum_probs=224.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
...+....+++..++.++.|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+....++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~ 134 (496)
T PRK03893 57 AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAGEYGSSATYVI 134 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677778889999999999999999999999999999999998 8999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH-hhh
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK-RHI 366 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 366 (579)
|++|+++|++++++...+..+|.+++|.+++.+.+.++||+.|++.++..++ .++.....|+.++..++.+.... ...
T Consensus 135 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~ 213 (496)
T PRK03893 135 ESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTM 213 (496)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhH
Confidence 9999999999999999999999999999999999999999999874433322 22222223332211000000000 000
Q ss_pred hcCCcccccccchhH----------HHHh-------------------------------hchHHHHHHHHHHHHHHHHH
Q 008070 367 LGGSISKEAVSVIPW----------KLIL-------------------------------SKAPVWALIISHFCHNWGTF 405 (579)
Q Consensus 367 ~~~~~~~~~~~~~~~----------~~l~-------------------------------~~~~~~~~~l~~~~~~~~~~ 405 (579)
.+.....+. ..... ...+ +.+....+.+..+......+
T Consensus 214 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (496)
T PRK03893 214 VDILYRGEH-RIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSW 292 (496)
T ss_pred HHHHhcchh-HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccc
Confidence 000000000 00000 0000 00000001111111111112
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT 485 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (579)
....++|.|+++.+|++..+.+++.+...++.+++.++.|++.||+++|+....+. .+...............
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 365 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSL-------LISQLLIIPVFAIGGAN 365 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH-------HHHHHHHHHHhhccccH
Confidence 34568899998778999999999999999999999999999999999987543221 11111111111111122
Q ss_pred hHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 008070 486 PAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 486 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~ 564 (579)
.+..... +..+...............+..+++.+|+++|+.+....+|+.++|.+.|.+.+..|+...+.+.+++..+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~ 445 (496)
T PRK03893 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFV 445 (496)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 2222222 211112212222222233455677899999999999999999999999999999999988876655544443
Q ss_pred H
Q 008070 565 T 565 (579)
Q Consensus 565 ~ 565 (579)
.
T Consensus 446 ~ 446 (496)
T PRK03893 446 V 446 (496)
T ss_pred H
Confidence 3
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=234.69 Aligned_cols=346 Identities=16% Similarity=0.163 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh---hhccCHHHHHHHHHHHHhhhhchhhH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---AARIGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~---a~~~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
...+.++..+..+..++..+++|.++||++||++++.+.++.++..++.++ ....+.+.+++.-++.|++.++..|+
T Consensus 44 ~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA 123 (524)
T PF05977_consen 44 PLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPA 123 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777778899999999999999999999888766554433 23346788999999999999999999
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~ 361 (579)
.++++.+++|+++...++++.+...++..++||.++|.++..+|-.++|.+.++..++..+......++.+++.. .++.
T Consensus 124 ~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~-~~e~ 202 (524)
T PF05977_consen 124 WQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSL-PRER 202 (524)
T ss_pred HHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc-chhh
Confidence 999999999999999999999999999999999999999999999999999887766655444444332221111 1111
Q ss_pred HHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHH
Q 008070 362 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFA 441 (579)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~ 441 (579)
-.. .-...++.+.++|.+...++..+++++....+...+|.+.++.+|.++...|++.+..++++++|.
T Consensus 203 ~~~-----------~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga 271 (524)
T PF05977_consen 203 FFS-----------ALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA 271 (524)
T ss_pred hhh-----------hHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 000 011346677778888777776666666666677789999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchh
Q 008070 442 NMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAG 520 (579)
Q Consensus 442 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 520 (579)
++.+++.+|+++++++.. +.++.++.+.........+...+.+++.+............ ....+|++.+|
T Consensus 272 l~~~~l~~~~~~~~lv~~---------~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G 342 (524)
T PF05977_consen 272 LLLPRLRRRLSSRRLVLL---------ASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG 342 (524)
T ss_pred HHHHHhhcccCcchhhHH---------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 999999999887754332 12222222223333444444444444444444444444333 55567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 521 VLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 521 ~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
++++++.++...+..+|..+.|.+.+..|...++.+.++..+++.++....
T Consensus 343 Rv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 343 RVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988887777776666554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=232.84 Aligned_cols=338 Identities=11% Similarity=0.078 Sum_probs=239.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...++++.+...+...+.+++.|+++||+|||++++++.++.+++.++.++++ +++.+++.|++.|.+.+...+...+
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~ 119 (395)
T PRK10054 42 VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVN--NVTLVVLFFALINCAYSVFSTVLKA 119 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777778888899999999999999999999999999999999998 7888888899999888888888999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
+..|.+|+++|++++++.....++|.++||++++++.. .+|++.|++.+++.++..++..+..++.++++++.++ +
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~--~- 195 (395)
T PRK10054 120 WFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETG--S- 195 (395)
T ss_pred HHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchh--h-
Confidence 99999999999999999999999999999999999875 7999999988877776655554444433221111000 0
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChhhhhHHhHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~ig~~ 442 (579)
....++.+++|.++...+..++..+.......+.+.|.... .+.+....+.+.....+..+...+
T Consensus 196 -------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 262 (395)
T PRK10054 196 -------------VWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQY 262 (395)
T ss_pred -------------hhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehh
Confidence 01135578889988888777777776666666777776543 355566677777777777777778
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHH
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVL 522 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 522 (579)
..|++.||.++|+.+..+ ..+....+........+.+.+.+.....+.+.....+.......+..|++.++++
T Consensus 263 ~~g~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~ 335 (395)
T PRK10054 263 SVGRRLNAANIRPLMTAG-------TLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASY 335 (395)
T ss_pred HHHHHHccCCchhHHHHH-------HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceeh
Confidence 889999999888644322 1111111111111111222222233333333322222222233444677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 569 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~ 569 (579)
++..+ ...+|.++||.++|.++|+.|+...|++.+++..+..++.+
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 98765 56789999999999999999999888887766665555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=263.65 Aligned_cols=347 Identities=13% Similarity=0.084 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHH---HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGF---GVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~---~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
+.+.+..++.++...+.++++|+++||+|||+++.. ..++..+..++....+ +++.++++|+++|++.++..|+.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~~~l~gi~~a~~~p~~ 129 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLN--SVPLLFAALFLMGIHSALFGPIK 129 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhchHH
Confidence 556777777888888999999999999999997533 2222222233333345 79999999999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
.+++.+++++++|++++|+.+++.++|.++||++++++....+|++.|++.+++.++.+++. +..++.+..........
T Consensus 130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 208 (1140)
T PRK06814 130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLAS-LFIPKTGNAAPDLKIDR 208 (1140)
T ss_pred HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-hhCCCCCCCCCCCeecc
Confidence 99999999999999999999999999999999999999999999999955444444444333 33443332211111000
Q ss_pred HhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHH
Q 008070 363 KRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFAN 442 (579)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~ 442 (579)
.. .......++.+++++.++...+..++.++..+.+..++|.|+.+.+|.++...|++.+...++.++|.+
T Consensus 209 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~ 279 (1140)
T PRK06814 209 NI---------IRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSF 279 (1140)
T ss_pred ch---------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 00 000113577788999999999988888888888889999999998999999999999999999999999
Q ss_pred HHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHH-------------H-HHhhccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008070 443 MGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF-------------L-TQLSHVRTPAMAVLCMACSQGSDAFSQSGLY 508 (579)
Q Consensus 443 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.|++.++..+++....+. ++..+..+...+. + ......+.+.+.+..++++.+......+...
T Consensus 280 ~~g~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 357 (1140)
T PRK06814 280 LASKLSEGRITLLYVPIGA--LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFA 357 (1140)
T ss_pred HHHHHhCCceeeeeehHHH--HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999998877666443322 1111111111110 0 0000122233333334444444444444444
Q ss_pred hhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHH
Q 008070 509 SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-RGSWDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 509 ~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~-~~g~~~~~~~~~~~~~l~~~ 566 (579)
...+..+++.+|+++|+.+++..++..+++++.|.+.+ ..++...+++.+++.++..+
T Consensus 358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 416 (1140)
T PRK06814 358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIVAI 416 (1140)
T ss_pred HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 45666888999999999999999999999999999985 46777777666555444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-25 Score=231.13 Aligned_cols=335 Identities=10% Similarity=0.085 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHH---HhhhccCHHHHHHHHHHHHhhhhchhhHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~---~~a~~~~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
....++.+..+++..++.++.|++.||+|||++++++.++++++.+++ .+++ +++.+++.|+++|+|.+...+..
T Consensus 61 ~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~--~~~~ll~~r~l~G~g~g~~~~~~ 138 (438)
T PRK10133 61 FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHhhH
Confidence 455677777788888888999999999999999999999999999875 4566 89999999999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-c-------------------------cCcchHHHHhhHH
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-K-------------------------FGWPSVFYSFGSL 336 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-~-------------------------~gwr~~f~i~~~~ 336 (579)
+.++.++.++++|...+++.+....+|..+++.+++.+.. . .+||++|+....+
T Consensus 139 ~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v 218 (438)
T PRK10133 139 NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAI 218 (438)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877777778999999999999999999876541 0 2566666544433
Q ss_pred HH-HHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 337 GS-IWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYY 415 (579)
Q Consensus 337 ~l-i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l 415 (579)
.. +..++.....|+.+.++. .+ + +.......++.++++|.++...+..++.....+....|++.|+
T Consensus 219 ~~~~~~~~~~~~~p~~~~~~~--~~-~----------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 285 (438)
T PRK10133 219 VLLVALLIMLTKFPALQSDNH--SD-A----------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYA 285 (438)
T ss_pred HHHHHHHHHHhcCCCCCcccc--cc-c----------cccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 322222222232111100 00 0 0000112355678999988877777877788888888899885
Q ss_pred -HHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 008070 416 -NQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMA 494 (579)
Q Consensus 416 -~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (579)
++.+|+++.++++.+....++.++++++.+++.||+++++.+..+. .++... +.+.... .. ......+..
T Consensus 286 ~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~-----~~~~~~--~~~~~~~-~~-~~~~~~~~l 356 (438)
T PRK10133 286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA-----LIAMAL--CLISAFA-GG-HVGLIALTL 356 (438)
T ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-----HHHHHH--HHHHHHc-CC-hHHHHHHHH
Confidence 5668999999999999999999999999999999999987654321 111111 1111111 11 122223333
Q ss_pred HHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHH
Q 008070 495 CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~ 566 (579)
.+.+.....+.......+. .+++.+++.++.. +..+|+.++|++.|.+.|..| .+..|++..++.+....
T Consensus 357 ~glg~~~i~P~~~s~a~~~-~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 357 CSAFMSIQYPTIFSLGIKN-LGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHcc-cchhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4444444444444444444 4556778888876 455789999999999999887 77777765555444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=234.06 Aligned_cols=327 Identities=20% Similarity=0.279 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+.++.....+...++.++.|+++||+|||++++++.++..++.+++++++ +++.+++.|++.|++.+...+...+++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 53 QLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT--NVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHhcccccchhhHHHHH
Confidence 345566667777788889999999999999999999999999999999988 889999999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH----
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE---- 362 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~---- 362 (579)
.|++|+++|++++++...+..+|..+++.+++++.+..+|++.|++.+++.++..++.+...|+.++...+.++++
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRI 210 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999877766666666666665543211111100
Q ss_pred Hhhhh-c---C-----Cc--ccccccchhHHHHhh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhH
Q 008070 363 KRHIL-G---G-----SI--SKEAVSVIPWKLILS---KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 428 (579)
Q Consensus 363 ~~~~~-~---~-----~~--~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~ 428 (579)
.++.. . . .+ .+.+.....++.+++ .+..+.+.+..++.....+....++|.+..+ +|+++.+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~ 289 (398)
T TIGR00895 211 VNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-LGFSLSLAAT 289 (398)
T ss_pred HHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 00000 0 0 00 000001111222232 2334444555556666677777888855554 8999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008070 429 FCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLY 508 (579)
Q Consensus 429 ~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.....++.+++.++.+++.||++++.... .....+.. ...+.. ...+........+..+.+..........
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 361 (398)
T TIGR00895 290 GGALFNFGGVIGSIIFGWLADRLGPRVTAL-----LLLLGAVF--AVLVGS-TLFSPTLLLLLGAIAGFFVNGGQSGLYA 361 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHH-----HHHHHHHH--HHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873211 11111111 111111 1122223333333344444334344444
Q ss_pred hhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 509 SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI 544 (579)
Q Consensus 509 ~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l 544 (579)
...+..|++.+|+++|+.+.+..+|.+++|.+.|++
T Consensus 362 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 362 LMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 455667789999999999999999999999999976
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-25 Score=226.82 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=236.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHH----HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchh
Q 008070 204 KRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVL----GFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 204 ~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l----~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~ 279 (579)
....+.++.+...+...+.++++|+++||+||+... .++..+..+ +.+.+++ +++.+++.|+++|.+.+...
T Consensus 37 s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~--~~~~l~~~~~l~~~~~~~~~ 112 (382)
T TIGR00902 37 GEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAH--NAWLLFIAIGLFALFFSAGM 112 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhh--hHHHHHHHHHHHHHHHccch
Confidence 356677888888888899999999999999985433 222222222 2334566 78999999999999998888
Q ss_pred hHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc
Q 008070 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR 359 (579)
Q Consensus 280 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~ 359 (579)
|...++..++ +++|++++|....+.++|.+++|++++++.+.+|||+.|++.+++.++ .++.+...++.++++++ +
T Consensus 113 p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~-~ 188 (382)
T TIGR00902 113 PIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLIGFLIKPTIPPKDAI-P 188 (382)
T ss_pred hHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHHHHcCCCCCCCccc-c
Confidence 9988887654 478899999999999999999999999999999999999887655333 22233333321221110 0
Q ss_pred HHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHH
Q 008070 360 AEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439 (579)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~i 439 (579)
+ . +......+++++|+|+++.+.+..++.......+..+.|.|+++ .|.++.+.|++.....++.++
T Consensus 189 ~--~----------~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~ 255 (382)
T TIGR00902 189 E--D----------ESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEII 255 (382)
T ss_pred c--c----------ccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence 0 0 00111246678899999999999998888888999999999987 899999999999988899999
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 440 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
+.++.+++.||++.++.+.. +.+...+.+......++.+... ....-+......... ...+.++.|+++
T Consensus 256 ~~~~~~~l~~r~g~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~-~~~~i~~~~~~~ 325 (382)
T TIGR00902 256 IFAFSNKLFQNCSARDLLLI---------SAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLA-AMRYIAAQPGSE 325 (382)
T ss_pred HHHHhHHHHhhCCHHHHHHH---------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhh
Confidence 99999999999999865432 2222222222222233333333 333333333333333 333333447788
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008070 519 AGVLLGLSNT-AGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 519 ~g~~~g~~~~-~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
+++..++++. ...+|..+++.++|+++|+.|+ ..|.+.+++.+++.++
T Consensus 326 ~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 326 IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8999999874 5679999999999999999986 6677777777766444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-24 Score=223.99 Aligned_cols=344 Identities=13% Similarity=0.114 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhc-----CCcH-HHHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHhhhhchh
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKF-----GGKP-VLGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~-----Grr~-~l~~~~~~~~~~~ll~~~a~~-~~~~~ll~~r~l~Gig~g~~~ 279 (579)
.++++..+... .+..+++|+++||+ |||+ +++++.++.+++.+++++.+. .+++.+++..++.++..+...
T Consensus 35 ~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 112 (402)
T PRK11902 35 TIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQD 112 (402)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 44444443333 57779999999999 8765 788888888888888787732 247778888888899899999
Q ss_pred hHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 280 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~-~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
++..+++.|++|+|+|+++.++...+..+|.++++.+++.+.+. .|||..|++.+++.++..+.. +..+|+++++++.
T Consensus 113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~~~~~~ 191 (402)
T PRK11902 113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEVPARPP 191 (402)
T ss_pred HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCccccccc
Confidence 99999999999999999999999999999999999999999885 599999999888776655443 3344432221111
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHH-HHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPW-LTM 437 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~ 437 (579)
++ ..+ .....+++++++|.++.+++..++..........+.+.++.+.+|+++.+.+++....+ ++.
T Consensus 192 ~~-~~~-----------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~ 259 (402)
T PRK11902 192 RS-LGE-----------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAAT 259 (402)
T ss_pred ch-hHH-----------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence 00 000 01235677899999988777777666555444455566677778999999999876655 468
Q ss_pred HHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH----HHhhhhhhhhhhhhhhccc
Q 008070 438 AVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMA----CSQGSDAFSQSGLYSNHQD 513 (579)
Q Consensus 438 ~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 513 (579)
+++.++.+++.||+++|+...... ....+....+...... .+..+....... .++..............+
T Consensus 260 i~g~~~~g~l~~r~g~~~~l~~~~----~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 333 (402)
T PRK11902 260 IVGALAGGTLMVRLGLYRSLMLFG----VLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCN- 333 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 899999999999999886533211 0111111111111111 122222222221 122222222333333332
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 514 IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 514 ~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.+..++..++.+....++..+++.++|.+.|..||...|.+.+++.+++.++.....+
T Consensus 334 --~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 334 --RSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2223445566666777888877889999999999999999999888887766655443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=221.20 Aligned_cols=343 Identities=17% Similarity=0.109 Sum_probs=266.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...++++...-.+...+.+++.|.+.||+|+|..+++|++++..+++++++.. +++.++++|.+||+|.++..++..+
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 34578888888889999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHhcccCcC-chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH
Q 008070 285 MLSKWIPVS-ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363 (579)
Q Consensus 285 ~i~~~~~~~-~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~ 363 (579)
+++|.+|++ +|++++|+...+.++|.++||++||++++..|.+.+|++.+++.++-.++.++..++...++....
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~---- 258 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE---- 258 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc----
Confidence 999999865 579999999999999999999999999999999999999999999988887777654333221100
Q ss_pred hhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 364 RHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
...++..++++|.++.........+.........++.+..+.+..+..+.|+.+....+...++..+
T Consensus 259 -------------~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~l 325 (464)
T KOG3764|consen 259 -------------QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNL 325 (464)
T ss_pred -------------cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCch
Confidence 1134667899999998888888778787778888899998888856669999999999999999999
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHhhhh-hhhhhhhhhhccccCCC--
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP---AMAVLCMACSQGSD-AFSQSGLYSNHQDIGPR-- 517 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 517 (579)
.|.+.||++..+++. .+.+++..+.........+.+ ++......++++.. ....+.+.........+
T Consensus 326 fg~la~k~~~~~wl~-------~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~ 398 (464)
T KOG3764|consen 326 FGKLADKYPHLRWLL-------SLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGF 398 (464)
T ss_pred HHHHHHhcCchhHHH-------HHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhcccc
Confidence 999999999665432 223333333332222222222 22222222222222 22223333232221222
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 518 -YAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 518 -~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
..|.+.++......+|.++||.++|.+.+..|+.+...+.++..++-.-++.+++.
T Consensus 399 ~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 399 NVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred ceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998888887776665555543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=223.15 Aligned_cols=333 Identities=11% Similarity=0.072 Sum_probs=230.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCc----HHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchh
Q 008070 204 KRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGK----PVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 204 ~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr----~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~ 279 (579)
....++++.++..+...+.++++|++.||+||| +.+.++..+. ........+ +++.+++.|++.|++.+...
T Consensus 37 s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~i~~~l~g~~~~~~~ 112 (382)
T PRK11128 37 TPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAH--SFWLLFVAIGLFNLFFSPLV 112 (382)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcc--cHHHHHHHHHHHHHHHcccc
Confidence 356778888888999999999999999999994 3332222222 222233345 78999999999999999899
Q ss_pred hHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc
Q 008070 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR 359 (579)
Q Consensus 280 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~ 359 (579)
+...+++.++ .++|+++++....+.++|.++||++++++.+++|||..|++.++..++..+.. +..|+.+++.++
T Consensus 113 ~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 187 (382)
T PRK11128 113 PLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPTIMPQGES-- 187 (382)
T ss_pred cHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCCCCCcccc--
Confidence 9888888876 46688889999999999999999999999999999999988776554443332 333332111110
Q ss_pred HHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHH
Q 008070 360 AEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAV 439 (579)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~i 439 (579)
++. .+.....+++++++|.++.+.+..++..........+.|.|+.+ .|++..+.|.+.....++.++
T Consensus 188 --~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~ 255 (382)
T PRK11128 188 --RQQ---------ESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVL 255 (382)
T ss_pred --ccc---------cccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHH
Confidence 000 00012357789999999988888887777777788888999977 799999999999988888999
Q ss_pred HHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCch
Q 008070 440 FANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYA 519 (579)
Q Consensus 440 g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (579)
..++.+++.||+++++.+..+ .+..++........+..+..++..++.+.......+....+..+.+++++
T Consensus 256 ~~~~~g~l~~r~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 326 (382)
T PRK11128 256 IFAFSNRLFRRWSARDLLLLS---------AICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEV 326 (382)
T ss_pred HHHHHHHHHHHCCHHHHHHHH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhh
Confidence 999999999999998654322 11111111111222333433333333333333334444444444567777
Q ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008070 520 GVLLGLSN-TAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 520 g~~~g~~~-~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
++..++.+ ....+|..+||.++|.+.|..|+ ..++..+++.+++.++
T Consensus 327 ~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 327 IRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 88899887 44567779999999999999887 4666666666555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=222.69 Aligned_cols=333 Identities=14% Similarity=0.127 Sum_probs=233.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh-ccCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-RIGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~-~~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
.....++.+..+++..++.++.|++.||+|||++++++.++++++.+++..+. ..+++.+++.|++.|+|.+...+..+
T Consensus 37 ~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~ 116 (410)
T TIGR00885 37 AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAAN 116 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhh
Confidence 45578888899999999999999999999999999999999999998865432 11789999999999999999999999
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------cCcchHHHHhhHHH
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------------------------FGWPSVFYSFGSLG 337 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~--------------------------~gwr~~f~i~~~~~ 337 (579)
.++.++.|+++|++.+++.+...++|..+||.+++.+... .+||++|++.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~ 196 (410)
T TIGR00885 117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV 196 (410)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887532 36999999988877
Q ss_pred HHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 338 SIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ 417 (579)
Q Consensus 338 li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~ 417 (579)
++..++..+. + .|+.+++.. ++ .......+.++++|.++...+..+++........++++.|.++
T Consensus 197 ~~~~~~~~~~-~-~p~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~ 261 (410)
T TIGR00885 197 LAVALLIMLT-K-MPALNHSDA--KQ-----------ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVR 261 (410)
T ss_pred HHHHHHHHHh-c-CCCCCcccc--cc-----------ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7655444322 1 111111000 00 0001134567889999988888888888888888999999976
Q ss_pred hh-CCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 008070 418 VL-KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 496 (579)
Q Consensus 418 ~~-g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (579)
.. +.+....+........+..+|+++++++.||+++++.+... ...+.++ ..+... .+.......+...+
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~-----~~~~~~~--~ll~~~--~~~~~~~~~l~~~g 332 (410)
T TIGR00885 262 LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAY-----AIIGMAL--CLGSIF--AGGHVGLYCLTLCS 332 (410)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH-----HHHHHHH--HHHHHH--cCChHHHHHHHHHH
Confidence 32 44444455566666788899999999999999988653321 1111111 111111 12223334444455
Q ss_pred hhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHH
Q 008070 497 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG------SWDDVFKVAVVLYII 563 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~------g~~~~~~~~~~~~~l 563 (579)
.+.....+.......+..+++......++... .+|+++.|++.|.+.|.. +++..|++...+.+.
T Consensus 333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 55545554444445555555554434444443 399999999999999953 577777765544433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=221.37 Aligned_cols=312 Identities=13% Similarity=0.113 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+..+++..++.++.|+++||+|||+++.++.++..++.+++ ..+ +++.+++.|++.|++.+...+....+
T Consensus 35 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--~~~~l~~~~~~~g~g~~~~~~~~~~~ 111 (355)
T TIGR00896 35 SVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--GTALLFAGTALIGVGIAIINVLLPSL 111 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--cHHHHHHHHHHHHHHHHHHhccchHH
Confidence 346778888889999999999999999999999999999888888777 666 78889999999999999888888889
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc--CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~--gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~ 363 (579)
+.++++ ++|+++++++..+..+|..+++.+++.+.+.. +||+.|.+.+++.++..... .++.++++++..
T Consensus 112 ~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 183 (355)
T TIGR00896 112 IKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLAW---IPQVRRRVAANQ---- 183 (355)
T ss_pred HHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH---hhhhccccCCCC----
Confidence 999985 78999999999999999999999999888764 39999887766544432222 222111110000
Q ss_pred hhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 364 RHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
. ......++++++|.++...+..++....++....++|.|+++ .|++..+.+.+.+...++.++++++
T Consensus 184 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~ 251 (355)
T TIGR00896 184 T-----------TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALL 251 (355)
T ss_pred C-----------CCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 000123456788888887777777777788888999999987 6999999999999999999999999
Q ss_pred HHHHhhhhhccCc-chHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhcccc-CCCchhH
Q 008070 444 GGWIADTLVSKGL-SITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDI-GPRYAGV 521 (579)
Q Consensus 444 ~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~ 521 (579)
.|++.||++.++. ...+ ..+...+.............. ...+.+.+.....+.......... +++.++.
T Consensus 252 ~g~l~dr~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~ 322 (355)
T TIGR00896 252 IPALARRVKDQRGIVAVL-------AVLQLVGLCGLLFAPMHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAA 322 (355)
T ss_pred HHHHHhhhccchHHHHHH-------HHHHHHHHHHHHHhhhhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHH
Confidence 9999999965442 2211 111111111111111111111 222333333333333223233333 3467799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 522 LLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 522 ~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
..++.+....++.+++|.+.|++.|+.|
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999854
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=254.20 Aligned_cols=343 Identities=15% Similarity=0.113 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH---hhhccCHHHHHHHHHHHHhhhhchhhH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---VAARIGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~---~a~~~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
...+.++.++.++...++.+++|+++||+|||++++++.++.+++.++.. +.+ +++.+++.|+++|++.+...++
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~ 123 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG--WFWLAFAVTFLLGAQSAIYSPA 123 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHhhchH
Confidence 34566777788888889999999999999999999998877666655543 345 6899999999999999999999
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------c-CcchHHHHhhHHHHHHHHHHHhhhcCCC
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------F-GWPSVFYSFGSLGSIWFALWLKKAYSSP 352 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~--------~-gwr~~f~i~~~~~li~~~l~~~~~~~~~ 352 (579)
..+++.|++|+++|++++++...+..+|.++|+++++++... + +|++.+.+.++..++..++..+..++.+
T Consensus 124 ~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1146)
T PRK08633 124 KYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVP 203 (1146)
T ss_pred HHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999875 2 3445544444433333333334445444
Q ss_pred CCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh-hhhHHhH
Q 008070 353 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT-ESGLFCV 431 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~-~~g~~~~ 431 (579)
+......+... ..........++.+++++.++...+..++..+..+.+..++|.|+.+.+|++.. ..+++.+
T Consensus 204 ~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~ 276 (1146)
T PRK08633 204 AAAPEVFDKKK-------YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLA 276 (1146)
T ss_pred CCCcccccccc-------cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHH
Confidence 32221100000 000011123466778889888888877777777777888999999998999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhc
Q 008070 432 LPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNH 511 (579)
Q Consensus 432 ~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (579)
...++.+++.++.+++.||+++++.+..+. +...++ +.++.. ..+.+..++..++++.+......+......
T Consensus 277 ~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~--~~~~~~-----~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (1146)
T PRK08633 277 ASAIGIGIGSLLAGRLSGRHIELGLVPLGA--LGLALS-----LFLLPT-APSLASVLVLFFLFGFSAGLFIVPLNALIQ 348 (1146)
T ss_pred HHHHHHHHHHHHHHHHhCCceEccchhHHH--HHHHHH-----HHHHHH-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999886544321 111111 111111 112222233333333333333333333444
Q ss_pred cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHH
Q 008070 512 QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 512 ~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~ 564 (579)
+..+++.+|+++|+.+++..++.++++.+++.+... .++...+++.+.+.++.
T Consensus 349 ~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 402 (1146)
T PRK08633 349 FRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIG 402 (1146)
T ss_pred hcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 556789999999999999999998888877766542 34555565555544443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=223.63 Aligned_cols=316 Identities=17% Similarity=0.191 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.....++..+..+++|+++||+|||++++++.++..++.+++++++. +++.+++.|+++|++.+. .+...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~ 114 (366)
T TIGR00886 37 AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIGIAGGS-FASCMPW 114 (366)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhchh-hHhHHHH
Confidence 34567778888888999999999999999999999999999999999888763 578899999999999664 5667899
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc----------ccCcchHH-HHhhHHHHHHHHHHHhhhcCCCCC
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ----------KFGWPSVF-YSFGSLGSIWFALWLKKAYSSPKE 354 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~----------~~gwr~~f-~i~~~~~li~~~l~~~~~~~~~~~ 354 (579)
+.+++|+++|++++++.....++|..+++.+++.+.. ..+||+.| ++.+++.++..++.+...++.|++
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG 194 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 9999999999999999998888888888887776654 34899999 444555555555555555554432
Q ss_pred ChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHH
Q 008070 355 DPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPW 434 (579)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~ 434 (579)
+++..+.+.. ......+.......++.+++|.++...+..++.....+.+..+.|.|+++.+|+++.+++.+..+..
T Consensus 195 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 271 (366)
T TIGR00886 195 KPATGKLSFK---GARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGG 271 (366)
T ss_pred cccchhcccc---cccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111110000 0000000111124566788899888888888777777888899999999989999999999888999
Q ss_pred HHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHhhhhhhhhhhhhhhcc
Q 008070 435 LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TPAMAVLCMACSQGSDAFSQSGLYSNHQ 512 (579)
Q Consensus 435 ~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (579)
+..++++++.|++.||+++|+....+ .........+....... ..........+.....+...........
T Consensus 272 ~~~~~~~~~~g~l~~r~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 344 (366)
T TIGR00886 272 LLGSLARPLGGAISDRLGGARKLLMS-------FLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVP 344 (366)
T ss_pred HHHHHHhhccchHHHhhccchhHHHH-------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcch
Confidence 99999999999999999998654322 11111111111111111 2222222222222222333333444444
Q ss_pred ccCCCchhHHHHHHHHHHHHH
Q 008070 513 DIGPRYAGVLLGLSNTAGVLA 533 (579)
Q Consensus 513 ~~~~~~~g~~~g~~~~~~~lg 533 (579)
+..|+++|+++|+.+...++|
T Consensus 345 ~~~~~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 345 HIFRRATGAVSGLVGAIGNLG 365 (366)
T ss_pred hhchhhcccHHHHHHHhccCC
Confidence 556789999999999888765
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=228.06 Aligned_cols=242 Identities=19% Similarity=0.270 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
...+.++.++++.++.+++|.|.||++..+.+....+++++..++..... |++.+++.|++.|+..+..+|+...+++
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg 160 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILG 160 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 46677778888889999999999999999999999999888888887787 8999999999999999999999999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh------cccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI------QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~------~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~ 361 (579)
.|+.++||+..++++.+..++|.++|.+++..+. ...||||.|++.+++.++..++.++.+|+.|.+..-..++
T Consensus 161 ~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ 240 (495)
T KOG2533|consen 161 NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE 240 (495)
T ss_pred hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH
Confidence 9999999999999999999999999999999863 4579999999999999999999999999988755433333
Q ss_pred HHh----hhh--cCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH
Q 008070 362 EKR----HIL--GGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL 435 (579)
Q Consensus 362 ~~~----~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~ 435 (579)
++. ... ......++.+...+++.+++|.+|.+.+..++.....+++.+|+|.|+.+..|++..++..+.++..+
T Consensus 241 ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~ 320 (495)
T KOG2533|consen 241 EKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDV 320 (495)
T ss_pred HHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHh
Confidence 321 111 11111122566788999999999999999999999999999999999999667999999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q 008070 436 TMAVFANMGGWIADTL 451 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~ 451 (579)
+++++.++.|+++||+
T Consensus 321 ~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 321 GGIVGLILAGYLSDRL 336 (495)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999999995
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=230.36 Aligned_cols=354 Identities=16% Similarity=0.201 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHH-HHHHHHHHhhhhchhhHHHHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFL-LIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~l-l~~r~l~Gig~g~~~~~~~~~i 286 (579)
+.++.++...+.++..|+.+.+.||+|.|.+.++|.++..++.++.++++ ++|++ +...++.|+|.++.+.+...++
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~--~i~~l~lt~gvi~G~G~~~~~~paiviv 160 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFAT--SLWQLYLTFGVIGGLGLGLIYLPAVVIL 160 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhhccchhhhcchhhhh
Confidence 44555666666667779999999999999999999999999999999999 77665 5667999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChh---------
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE--------- 357 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~--------- 357 (579)
..|| +++|+.++|+...+.++|.++-|.+..++.+.+|||+.+++.+.+.+-.++......|..+...+.
T Consensus 161 ~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~ 239 (509)
T KOG2504|consen 161 GTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSA 239 (509)
T ss_pred hhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcccc
Confidence 9999 699999999999999999999999999999999999999999998877777777776633332111
Q ss_pred -----------hcHHHH------------hhhhcCCcccc--cccchhH---HHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 008070 358 -----------LRAEEK------------RHILGGSISKE--AVSVIPW---KLILSKAPVWALIISHFCHNWGTFILLT 409 (579)
Q Consensus 358 -----------~~~~~~------------~~~~~~~~~~~--~~~~~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (579)
....++ ....+...+.. ....... .++++++.++.+.+...+...+++....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~ 319 (509)
T KOG2504|consen 240 ASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFV 319 (509)
T ss_pred ccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000000000 1111111 4688999999999999999999999999
Q ss_pred HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 008070 410 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA 489 (579)
Q Consensus 410 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (579)
++|.|..+ .|++..+++.++++.++..++++++.|+++|+...++. .+..++++..++...........+.+
T Consensus 320 ~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~-------~~~~~~ll~~gl~~~~~p~~~~~~~l 391 (509)
T KOG2504|consen 320 YLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL-------VLFLLTLLIAGLARLFLPFATTYVGL 391 (509)
T ss_pred HHHHHHhh-cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH-------HHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999996 89999999999999999999999999999999885433 22333333333333333333444333
Q ss_pred -HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Q 008070 490 -VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 490 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~~ 567 (579)
..+.+++...+...........+.++.++...++|+...+..++..+||++.|++.|..| |...|++++++.+++.++
T Consensus 392 ~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~ 471 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVL 471 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHH
Confidence 333334433333333333345566788999999999999999999999999999999866 999999999999999877
Q ss_pred HHHhh
Q 008070 568 WNLFA 572 (579)
Q Consensus 568 ~~~~~ 572 (579)
+++..
T Consensus 472 ~~~~~ 476 (509)
T KOG2504|consen 472 LLILR 476 (509)
T ss_pred HHHhH
Confidence 76665
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=227.95 Aligned_cols=336 Identities=16% Similarity=0.184 Sum_probs=239.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhc
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 288 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~ 288 (579)
+++.....+...+..|++|+++|||+||+++.+|..++.++.++++++. .+|+++++|.+.|+|.+...++++++++|
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~--~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD 148 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN--HFWQVLLCRGFVGIGEASYSPIAPSLIAD 148 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccchhhhcccchhHhhh
Confidence 5566667777778889999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 289 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 289 ~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
.+|.++|++++++++.+..+|..+|.+.+..+.+..+ |||.|++.+++++++.++.+++.+|+++...++.+.+...
T Consensus 149 ~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-- 226 (493)
T KOG1330|consen 149 SFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-- 226 (493)
T ss_pred cCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC--
Confidence 9999999999999999999999999999999988766 9999999999999999999888887665322211111100
Q ss_pred cCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhhHHhHHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ---VLKFNLTESGLFCVLPWLTMAVFANMG 444 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~g~~~~~~~~~~~ig~~~~ 444 (579)
.........+.+.+.+++.+....+......+....+..|.|.+... ..|++..+..++..+..+++.+|.+++
T Consensus 227 ---~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~G 303 (493)
T KOG1330|consen 227 ---VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFG 303 (493)
T ss_pred ---CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheeh
Confidence 01112223455666666777766666666666666666666665543 345566666777778888999999999
Q ss_pred HHHhhhhhccCc--chHHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHHHHHHHhhhhhhhhhhhh-hhccccCCCch
Q 008070 445 GWIADTLVSKGL--SITAVRKIMQSIGFLGPAFFLTQL--SHVRTPAMAVLCMACSQGSDAFSQSGLY-SNHQDIGPRYA 519 (579)
Q Consensus 445 g~l~dr~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 519 (579)
|.++||+.++.. ............+......++... ......+..+++++++............ ...+.++|+.|
T Consensus 304 giisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~R 383 (493)
T KOG1330|consen 304 GIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRR 383 (493)
T ss_pred HHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccc
Confidence 999999644211 111111222223322222222222 2223333344444444433333333322 34556799999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHhc-CChH
Q 008070 520 GVLLGLSNTAGVL-AGVFGTAATGYILQR-GSWD 551 (579)
Q Consensus 520 g~~~g~~~~~~~l-g~~ig~~l~g~l~~~-~g~~ 551 (579)
.+++++...+..+ |.+-+|.+.|.+.|+ .||.
T Consensus 384 t~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 384 TTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred cHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 9999998888766 555556699999987 4555
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=221.19 Aligned_cols=351 Identities=13% Similarity=0.064 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH---hhhcc---CHHHHHHHHHHHHhhhhch
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP---VAARI---GLPFLLIMRAFMGIGEGVA 278 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~---~a~~~---~~~~ll~~r~l~Gig~g~~ 278 (579)
...++++.+...+...+.++++|+++||+|||++++++..+.+++..... .++.. .+...++.+++.|.+....
T Consensus 45 ~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (420)
T PRK09528 45 GTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAG 124 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45667888888888889999999999999999999887766655443221 11100 0111223333344333333
Q ss_pred hhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 279 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.+....+..+ . .+++++.+|......++|..++|++++.+.+ .+|++.|++.+++.++..++.++..++++++....
T Consensus 125 ~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
T PRK09528 125 AGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA 201 (420)
T ss_pred hhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc
Confidence 3333333322 2 3466788899999999999999999999876 58999999888777776666555544433221110
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChhhhhHHhHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL---KFNLTESGLFCVLPWL 435 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~ 435 (579)
+ ++.. ++++......+..+++|.++.+.+..++..........+.|.|+.+.+ +.+..+.+.+.++..+
T Consensus 202 ~-~~~~-------~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 273 (420)
T PRK09528 202 N-ALGA-------NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVF 273 (420)
T ss_pred c-chhc-------ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 0 0000 011112234556788888877666655555555555567787776643 4566778888888888
Q ss_pred HHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhh-hhhhhhhcccc
Q 008070 436 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS-QSGLYSNHQDI 514 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 514 (579)
+.+++.++.|++.||+++|+....+. .+......+... ...++..+....+.+...... ........+..
T Consensus 274 ~~~~~~~~~g~l~dr~g~~~~~~~~~-------~l~~~~~~l~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 344 (420)
T PRK09528 274 LEALIMFFAPFIINRIGAKNALLLAG-------TIMAVRIIGSGF--ATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF 344 (420)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHHH-------HHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999997644321 111111111111 222333333222222222222 22223334556
Q ss_pred CCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 515 GPRYAGVLLGL-SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 515 ~~~~~g~~~g~-~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
+++.+++..++ +++...+|.++++.+.|++.|..||+..|.+.+++.+++.++.....+++
T Consensus 345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 77888887765 67778899999999999999999999999998888877776666554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-23 Score=210.30 Aligned_cols=367 Identities=14% Similarity=0.097 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc-CHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~-~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
++-..+.+..+++.++++++.|+++||+|||..+.++.++..++.+++.++... ++.+++++|++.|+..|........
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pm 139 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344677788889999999999999999999999999999988888776655311 5788999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHH--hhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCCh----hh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPI--LIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP----EL 358 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~--l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~----~~ 358 (579)
++.|..|.+.||....+.+.+..+|.+++..++.. +.+...|++.+.+..+.+++..++ +.+.||+|+--- +.
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~-l~~~PESPk~Ll~~k~~~ 218 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLAL-LPFLPESPKYLLIKKGDE 218 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCCcchHHHHcCCH
Confidence 99999999999999999999999999999776643 334556999998888777665544 445677775211 11
Q ss_pred cHHHHh-hhhcC----------------CcccccccchhHHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 008070 359 RAEEKR-HILGG----------------SISKEAVSVIPWKLILSKAPVWAL-----IISHFCHNWGTFILLTWMPTYYN 416 (579)
Q Consensus 359 ~~~~~~-~~~~~----------------~~~~~~~~~~~~~~l~~~~~~~~~-----~l~~~~~~~~~~~~~~~~p~~l~ 416 (579)
++.++. +...+ ..+.++....+++++++++....- .+.......+.+....|...++.
T Consensus 219 ~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~ 298 (485)
T KOG0569|consen 219 EEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFK 298 (485)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHH
Confidence 111000 00000 011111244567888887665443 23333334445566667777777
Q ss_pred HhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc-ch-hHH--HHHH
Q 008070 417 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-RT-PAM--AVLC 492 (579)
Q Consensus 417 ~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--~~~~ 492 (579)
+ .|++..++.+.....++...+..+++.++.||+|||++++.+...+.....+ +.......... .. .+. ...+
T Consensus 299 ~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~--~~~~~~l~~~~~~~~~y~~i~~~~ 375 (485)
T KOG0569|consen 299 T-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL--MSIALFLSNSFGSWLSYLCIAAIF 375 (485)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7 6999999999999999999999999999999999998877665333322222 22222222222 11 112 2222
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 493 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
.....+..+..+.......+.++++.|..++++..++..+..++-...+..+.+..|- ..|+...+.+++..+..+...
T Consensus 376 ~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred HHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhC
Confidence 2233333344555566677778999999999999999999999999999999998876 677777777777777777776
Q ss_pred cCccc
Q 008070 573 TGERV 577 (579)
Q Consensus 573 ~~~~~ 577 (579)
++.|.
T Consensus 455 PETkg 459 (485)
T KOG0569|consen 455 PETKG 459 (485)
T ss_pred cccCC
Confidence 66553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=213.47 Aligned_cols=346 Identities=13% Similarity=0.072 Sum_probs=231.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHH---Hhhhc---cCHHHHHHHHHHHHhhhhch
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAAR---IGLPFLLIMRAFMGIGEGVA 278 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~---~~a~~---~~~~~ll~~r~l~Gig~g~~ 278 (579)
...+.++.+...+...+.++++|+++||+|||+.++.+.+..+++.... .+.+. ..+..+++.+++.|++.+..
T Consensus 37 ~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (396)
T TIGR00882 37 KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAG 116 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456788888999999999999999999999999988777665544332 12110 02334567788889988888
Q ss_pred hhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 279 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.+....++.+.. ++++..++......++|.++||++++.+.+ .+|++.|++.+++.++..++.+...++.++++..
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (396)
T TIGR00882 117 AGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATV- 192 (396)
T ss_pred hhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-
Confidence 888887777754 334567788888889999999999998865 6999999998888877766555544443221110
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChhhhhHHhHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL---KFNLTESGLFCVLPWL 435 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~ 435 (579)
+ +. .+ .++++....+.++++++|.++.+.+..++....+.....+.+.|+.+.+ +.+....|.+.++..+
T Consensus 193 -~-~~---~~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i 265 (396)
T TIGR00882 193 -A-NA---LG--ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGEL 265 (396)
T ss_pred -h-cc---cc--cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 0 00 00 0011122245778899999887777766666666666667888887754 4556677888888888
Q ss_pred HHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hcccc
Q 008070 436 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDI 514 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 514 (579)
...++.+..+++.||+++|+....+. .+......... .....+.......+.+............ ..+..
T Consensus 266 ~~~~~~~~~g~l~~r~g~~~~l~~~~-------~l~~l~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 266 LNALIMFCAPLIINRIGAKNALLIAG-------TIMSVRIIGSS--FATTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHH-------HHHHHHHHHHH--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999999999999997654321 11111111111 1222332222222222222222211222 23335
Q ss_pred CCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 515 GPRYAGVLLGL-SNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 515 ~~~~~g~~~g~-~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
+++.+++..+. .+....+|+++++.+.|++.|..||+.+|.+.+++.++..++..+
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766 678899999999999999999999999999999888877766543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.84 Aligned_cols=351 Identities=18% Similarity=0.106 Sum_probs=224.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
...-+.+.+...++.++.++.+|.++||+|||++++++.+..++..++.+++. |+..+++.|++.|+..| ......+
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F~afv~aR~l~Gi~kg-nl~v~rA 143 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NFAAFVLARFLGGIFKG-NLSVIRA 143 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccC-chHHHHH
Confidence 45567888999999999999999999999999999999999999999999999 88777777999999988 5677889
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCcchHHH---HhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ---KFGWPSVFY---SFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~---~~gwr~~f~---i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
+++|.+++|+|+++++.+....++|.++||.+|+++.+ ..|--+.++ +..++...-.....++.||+-+.+++.
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~ 223 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRN 223 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhc
Confidence 99999999999999999999999999999999999987 233211111 111122221222333445543322222
Q ss_pred cHHH-HhhhhcCCcccccccchhHHHHhhchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHh
Q 008070 359 RAEE-KRHILGGSISKEAVSVIPWKLILSKAPV-------WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFC 430 (579)
Q Consensus 359 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~ 430 (579)
++.. ..+......+..+.....-....+|++. ..+.+-.+++...+..+..+.+.+..+.+|+++.+.|.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl 303 (451)
T KOG2615|consen 224 DEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVL 303 (451)
T ss_pred ccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeee
Confidence 0000 0000000000000000111112333332 2233344444444444444555554567899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhh
Q 008070 431 VLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSN 510 (579)
Q Consensus 431 ~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (579)
+..++.+.+.........+|.... .. ......+.++...+.+ .........+.....+..+......+.+...
T Consensus 304 ~~tGl~m~~~ql~~~~~l~~~~~~-~~----a~l~~~l~~~vP~~ll--ls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~L 376 (451)
T KOG2615|consen 304 STTGLLMLVIQLALVPILPRYKGN-IK----AVLLFSLLLIVPAFLL--LSLARTPVVLYLGSTLKSFSTASVVTCLTSL 376 (451)
T ss_pred ehhhHHHHHHHHhccccccccccc-hh----hHHHHHHHHHHHHHHH--HhccccchhhhHHHHHHHHHHHHhhHHHHHH
Confidence 988888888777666666665422 10 1122222222222222 2223333444444445555555556666654
Q ss_pred ccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHH
Q 008070 511 HQD-IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGT 565 (579)
Q Consensus 511 ~~~-~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~ 565 (579)
... .++++||+++|+....+.++-++||.+.|.+..+ .+-+.++...+.+.++..
T Consensus 377 v~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~~ 433 (451)
T KOG2615|consen 377 VHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIPM 433 (451)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHHH
Confidence 444 5668999999999999999999999999999876 444555555555555553
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=206.21 Aligned_cols=292 Identities=12% Similarity=0.067 Sum_probs=204.7
Q ss_pred hhhhhhhhhhc-----CCcHH-HHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCch
Q 008070 223 RIVGGIWADKF-----GGKPV-LGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER 295 (579)
Q Consensus 223 ~~~~G~l~Dr~-----Grr~~-l~~~~~~~~~~~ll~~~a~~-~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r 295 (579)
.+++|+++||+ |||+. ++.+.++.++..++.++.+. .+.+.+.+..++.+++.+...++..+++.|++|+|+|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 78999999998 89886 56778888887777777631 2456677888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 296 SRSLAFVYSGMYLGSVTGLAVSPILIQKFG--------WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 296 ~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g--------wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
+++.++...+..+|.++++.+++.+....+ ||..|++.+++.++..+..++..+|+.+..+.. +++..
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~~~~~--- 193 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-KPLTQ--- 193 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-hhHHH---
Confidence 999999999999999999999999998888 999999988877775555554455532211111 10000
Q ss_pred cCCcccccccchhHHHHhhchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHH-HHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAP---VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPW-LTMAVFANM 443 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~-~~~~ig~~~ 443 (579)
.....++++++++. ++.+.+..++.....+....++|.|+++ +|+++.+.+.+....+ ++.+++.++
T Consensus 194 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~ 264 (356)
T TIGR00901 194 --------AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLI 264 (356)
T ss_pred --------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 01124566777765 7777777777778888888999999998 8999999998887666 577899999
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc------chhHHHHHHHHH-HhhhhhhhhhhhhhhccccCC
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV------RTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGP 516 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 516 (579)
+|++.||+|+|+.+..+. .+..+.. ........... ...+....+.++ +.+.............+..|+
T Consensus 265 ~g~l~~r~g~~~~l~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 340 (356)
T TIGR00901 265 GGIIMQPLNILYALLLFG--IVQALTN--AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP 340 (356)
T ss_pred HHHHHhhhhHHHHHHHHH--HHHHHHH--HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 999999999887543321 1111111 11111100100 122333333333 333333344444445666888
Q ss_pred CchhHHHHHHHHHHH
Q 008070 517 RYAGVLLGLSNTAGV 531 (579)
Q Consensus 517 ~~~g~~~g~~~~~~~ 531 (579)
+++|+.+|+.+...+
T Consensus 341 ~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 341 KFGATQMALLSSLSA 355 (356)
T ss_pred CccHHHHHHHHHHHh
Confidence 999999999887654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=215.47 Aligned_cols=326 Identities=16% Similarity=0.175 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhh----cCC-cHHHHHHHHHHHHHHHHHHhhhccC----HHHHHHHHHHHHhhh
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTPVAARIG----LPFLLIMRAFMGIGE 275 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr----~Gr-r~~l~~~~~~~~~~~ll~~~a~~~~----~~~ll~~r~l~Gig~ 275 (579)
...++++..+..+...+..|+.|+++|| +|| |+.++++.+..+++.+++.+.++.+ ...+++.+++.+++.
T Consensus 34 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (437)
T TIGR00792 34 AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFY 113 (437)
T ss_pred HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4556888888899999999999999998 677 4567788888888888887766321 456677888899998
Q ss_pred hchhhHHHHHHhccc-CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 276 GVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 276 g~~~~~~~~~i~~~~-~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-------~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
+...++..++..+.. ++++|++..++...+..+|.++++.+.+.+.. ..+||+.+++.+++.++..++.++.
T Consensus 114 ~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 114 SFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred HhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888889999987 46899999999999999998887776665542 4689999999998888777766666
Q ss_pred hcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhh
Q 008070 348 AYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESG 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g 427 (579)
.+|++++.++.++ ++......++.++++|.++.+++..++...+.+....+.+.|.+..++ ++...+
T Consensus 194 ~~e~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 260 (437)
T TIGR00792 194 TKERYSEIPKNIE------------KKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFS 260 (437)
T ss_pred CEecCCCCCcccc------------cCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHH
Confidence 6654422111000 000112346778899999988888888877777766666777766555 456677
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 507 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
.+.....++.+++.++.+++.||+|+|+....+. .+..++ .........+.+...+...+.+.+.... .+..
T Consensus 261 ~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 332 (437)
T TIGR00792 261 YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGI--LLMVLG-----YLIFFFAGSNLPLILVLIILAGFGQNFV-TGLV 332 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHH-----HHHHHHcchhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 7777778999999999999999999987654332 111111 1111111112222222222222222222 2222
Q ss_pred hhh-cccc-------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 508 YSN-HQDI-------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 508 ~~~-~~~~-------~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
... .+.. +++.+|.++|+.+++..+|..+++.+.|.+.+..||.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 333 WALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 222 2222 3567899999999999999999999999999887663
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-22 Score=205.24 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=230.6
Q ss_pred HHHHHH--HHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHHHH-HHHHHHHH-hhhccC-HHHHHHHHHHHHhhhhchh
Q 008070 206 WVVVLL--CFSAFLLCNMDRIVG-GIWADKFGGKPVLGFGVIWW-SVATVLTP-VAARIG-LPFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 206 ~~v~~l--~~~~~~~~~l~~~~~-G~l~Dr~Grr~~l~~~~~~~-~~~~ll~~-~a~~~~-~~~ll~~r~l~Gig~g~~~ 279 (579)
..++++ ..+.++..++..|++ ++..||+|||+.+++...+. .+.....+ +....+ ..+++...++.++..+...
T Consensus 36 ~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d 115 (390)
T TIGR02718 36 TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQD 115 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 344554 455677777777888 44789999998875555332 22222222 211102 3344555666777788888
Q ss_pred hHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc
Q 008070 280 PAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR 359 (579)
Q Consensus 280 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~ 359 (579)
+...++..|..++++++...+....+..+|.++|+...+++.+.+|||..|++.+++.++..+..++..++++++++. .
T Consensus 116 ~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-~ 194 (390)
T TIGR02718 116 IATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA-P 194 (390)
T ss_pred HHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc-c
Confidence 899999999998888899999999999999999999999999999999999999988877666655554443221110 0
Q ss_pred HHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH-HHH
Q 008070 360 AEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMA 438 (579)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~ 438 (579)
.. ...++++++|+|.++...+..++..........+.+.|+.| .|+++++.|++.....+ ..+
T Consensus 195 ~~---------------~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~ 258 (390)
T TIGR02718 195 LA---------------RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVL 258 (390)
T ss_pred hh---------------hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHH
Confidence 00 01235678889988888888888888788888899999988 69999999998887764 666
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhh-hhccccCC-
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLY-SNHQDIGP- 516 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 516 (579)
++.++.|++.||+++++....+. ....... .......................+.....+...+... ...+..++
T Consensus 259 ~g~~~~g~l~~r~g~~~~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 335 (390)
T TIGR02718 259 LGCGGGAWLVRRAGLWRTFILGV--GLAGSLA-LLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG 335 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH--HHHHHHH-HHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 77899999999999987654321 1110111 1111100000111122222222222222222222222 23344555
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008070 517 RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 517 ~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
+.+|+.+++.+...++|..++|.++|.++|..||...|.+.+++.+++.++
T Consensus 336 ~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 336 DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999888777766543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=207.67 Aligned_cols=341 Identities=10% Similarity=0.045 Sum_probs=227.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCC-cHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGG-KPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
...++++.+...+...++++++|.++||+|+ |+++.++.++..++..+..+.+ +++.+++.|++.|++.+...+...
T Consensus 37 ~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~ 114 (418)
T TIGR00889 37 GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT--TPAGMFPVLLANSLAYMPTIALTN 114 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHccHHHHHH
Confidence 4568899999999999999999999999965 7788888888888888888887 888999999999998887777766
Q ss_pred HHHhcc--------cCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC
Q 008070 284 NMLSKW--------IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED 355 (579)
Q Consensus 284 ~~i~~~--------~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~ 355 (579)
++...+ .....|.+.+| .+|.++||++++.+.....|+ .|++.+++.++..++ .+..||.|+.+
T Consensus 115 ~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~ 186 (418)
T TIGR00889 115 SISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVF-ALTLPDIPVAK 186 (418)
T ss_pred HHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence 654322 22233444444 478889999998874333354 355666655555544 33455544221
Q ss_pred hhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--------hhhh
Q 008070 356 PELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL--------TESG 427 (579)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~--------~~~g 427 (579)
++.+...++ ......+.++|+|.++.+.+..++..........+.+.|+++ .|.++ ...+
T Consensus 187 ~~~~~~~~~-----------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g 254 (418)
T TIGR00889 187 STAKMSIKV-----------MLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNAS 254 (418)
T ss_pred cccccCHHH-----------HhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHH
Confidence 111000000 001124457889998888888777766666667788888877 46543 5668
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHH-HHHHHHhhhhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TPAMAV-LCMACSQGSDAFSQ 504 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 504 (579)
...++..+..+++.++.|++.||+|+|+++..+. .+......+....... ..+..+ ..++.+.+......
T Consensus 255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~-------~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~ 327 (418)
T TIGR00889 255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL-------VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNI 327 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH-------HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999997544321 1111111111111111 122222 22223333222223
Q ss_pred hhhhhhccccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 505 SGLYSNHQDIGPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQR------GSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 505 ~~~~~~~~~~~~~~~g~~~g~~~-~~~~lg~~ig~~l~g~l~~~------~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.......+..|++.+|+++|+.+ ....+|.++||.++|++.|+ .||+.+|.+.+++.+++.++++++.++
T Consensus 328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333455678899999999997 56789999999999999998 368999998888877777666665443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=210.97 Aligned_cols=366 Identities=13% Similarity=0.063 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
....+.....+...++.+++|+++|| +|||++++++.++.+++.++.++++ +++.+++.+++.|+|.|...+...++
T Consensus 49 ~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~--~~~~~~~~~~l~g~g~g~~~~~~~~~ 126 (475)
T TIGR00924 49 QAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI--YPDLIFYGLGTIAVGSGLFKANPSSM 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc--cHhHHHHHHHHHHhccccccCCHHHH
Confidence 45666677777888889999999999 8999999999999999999999988 78888899999999999999999999
Q ss_pred HhcccCcCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhc---CCCCCChhhc
Q 008070 286 LSKWIPVSE---RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY---SSPKEDPELR 359 (579)
Q Consensus 286 i~~~~~~~~---r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~---~~~~~~~~~~ 359 (579)
+++++|+++ |+.+++++..+.++|.++||++++++.+.+||++.|++.++..++..+..+...+ +.++++.+.+
T Consensus 127 ~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (475)
T TIGR00924 127 VGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLS 206 (475)
T ss_pred HHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcc
Confidence 999998754 8889999999999999999999999999899999999877655444333333221 1111111111
Q ss_pred HHHHhhhh------------------cCCccc-------------------ccccchhHHHHhhchHHHHHHHHHHHHHH
Q 008070 360 AEEKRHIL------------------GGSISK-------------------EAVSVIPWKLILSKAPVWALIISHFCHNW 402 (579)
Q Consensus 360 ~~~~~~~~------------------~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 402 (579)
+++.+... ...... ...+.....+-.|...+..+++...+++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 286 (475)
T TIGR00924 207 GQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWV 286 (475)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHH
Confidence 11000000 000000 00000000111122234444555555566
Q ss_pred HHHHHHHHHHHHHHHhhCCChhh----hhHHhHHHHHHHHHHHHHHHHHhhhhhcc-----CcchHHHHHHHHHHHHHHH
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTE----SGLFCVLPWLTMAVFANMGGWIADTLVSK-----GLSITAVRKIMQSIGFLGP 473 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~----~g~~~~~~~~~~~ig~~~~g~l~dr~g~~-----~~~~~~~~~~~~~~~~~~~ 473 (579)
.+.-..+.++.+..+..+.+... .+++.++..+..++..++..++..|+.+| ..........+..++++..
T Consensus 287 ~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~ 366 (475)
T TIGR00924 287 LYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTF 366 (475)
T ss_pred HHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 66666667787777654433222 66777888887777777666555555543 1111111122222222222
Q ss_pred HHHHHHh---hccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 474 AFFLTQL---SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 474 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
.+..... ...+.++.+...++.+.+-....+.......+..|++.||+++|+......+|..+++.+.....+..++
T Consensus 367 ~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~ 446 (475)
T TIGR00924 367 AASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGV 446 (475)
T ss_pred HHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 2111010 1223344445555555555555555555566667889999999999999999999999999988887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 551 DDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 551 ~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
...|...+++++++.++.++..+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 447 TGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777766665554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=188.59 Aligned_cols=340 Identities=16% Similarity=0.208 Sum_probs=263.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
.-..+++..+..++..+.+++..+++.|+|.++.+..++++.+++.++-... +.+.++..-.+.|.|.+......++
T Consensus 46 ~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~gt~l~G~gIav~nVLLPs 122 (395)
T COG2807 46 FSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLGTLLAGAGIAVINVLLPS 122 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhHHHHHHhhhH
Confidence 3456788888888888889999999999999999999999999999998776 3678999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHH
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEK 363 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~ 363 (579)
++-+.|| ++-+..+|+|.+...+|..+++.+...+.++. |||..+.+.+.++++.+++++....+ ++ ... ...
T Consensus 123 lIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r-~~-~~~--~~~- 196 (395)
T COG2807 123 LIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALR-EQ-AAS--IAT- 196 (395)
T ss_pred HHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccc-cc-ccc--ccc-
Confidence 9999995 88999999999999999999999999998877 79999999999998888777765311 11 000 000
Q ss_pred hhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 364 RHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
+..+-..++++|.-|.+.+++.+..+.+|....|+|.++.| .|+++.++|.+.+...+..++..+.
T Consensus 197 -------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll 262 (395)
T COG2807 197 -------------KLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALL 262 (395)
T ss_pred -------------ccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHH
Confidence 00112337899999999999999999999999999999999 6999999999999999999999999
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhc-cccCCCchhHH
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNH-QDIGPRYAGVL 522 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~ 522 (579)
...+++|...++..... .........+.+. +.....+++.+ +.++.+.+..++..+.... ....++..+..
T Consensus 263 ~P~la~R~~n~r~~~~~-----~~~~~l~G~~G~~-~~P~~~~~lw~--~llG~G~G~~F~laL~li~~rs~~a~~Aa~L 334 (395)
T COG2807 263 IPLLARRSKNQRPLVVL-----ALLLMLVGLVGLL-LAPGQLPILWA--LLLGLGQGGAFPLALTLILLRSSDAAIAAAL 334 (395)
T ss_pred HHHHHHHhcccchHHHH-----HHHHHHHHHHHHH-HhhhhHHHHHH--HHHhCccchHHHHHHHHHHhhcCChHHHHHH
Confidence 99999987666654321 1111111111111 22233333332 3444444444444444433 33456888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 523 LGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 523 ~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
.|+.+.++++-.++||.+.|++.|. ++|...+.....+.++..++-+...|.+
T Consensus 335 SgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~r~~ 388 (395)
T COG2807 335 SGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAGRNR 388 (395)
T ss_pred HHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 9999999999999999999999998 7788888888777777766666655543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=192.52 Aligned_cols=341 Identities=13% Similarity=0.133 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH-hhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP-VAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~-~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
.-..++-+..+.++++..++.|++.+|+|+|+-+++|+.++++++.+.. .+...++..++++-++.|.|.+...++++.
T Consensus 48 ~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp 127 (422)
T COG0738 48 FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANP 127 (422)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccch
Confidence 3456777778888888999999999999999999999999999999874 222226788999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------------------cCcchHHHHhhHHHHHHHHHHH
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-------------------FGWPSVFYSFGSLGSIWFALWL 345 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~-------------------~gwr~~f~i~~~~~li~~~l~~ 345 (579)
+++.+.++++-.+.+++.+...++|.++||++++.++.. -.|+++|.+.+...+++.+...
T Consensus 128 ~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 128 YVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred HHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999998899999999999999999999999998762 1388888887777666555544
Q ss_pred hhh-cCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 008070 346 KKA-YSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLT 424 (579)
Q Consensus 346 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 424 (579)
... |+.++..++..+.. .....+++++|.++...+..|++-........|++.|+.+..|.+..
T Consensus 208 ~~k~p~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~ 272 (422)
T COG0738 208 LSKLPDLQVAAPSLGASG---------------SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQ 272 (422)
T ss_pred hccCCcCCcccccccccc---------------cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHH
Confidence 433 22222111111000 01356689999999999999999999999999999999998899999
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhh
Q 008070 425 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQ 504 (579)
Q Consensus 425 ~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (579)
++....+..+.+.++|++++.++..|+...|.+.. .++....++.. ....+..+.+.....++.+.....+
T Consensus 273 ~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf--------~a~~~ill~~~-~~l~~g~v~~~~l~~ig~F~simfP 343 (422)
T COG0738 273 QAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF--------YALIAILLLLA-VALIGGVVALYALFLIGLFNSIMFP 343 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH--------HHHHHHHHHHH-HHHhcChHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999987764321 11111111111 1112234444444455555555555
Q ss_pred hhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 505 SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 505 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+......+.++ ++ ....|....+..+|+++.|++.|++.|..|....+.....++.+-++.+.+..
T Consensus 344 TIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~~~~ 409 (422)
T COG0738 344 TIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIG 409 (422)
T ss_pred HHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555 33 33444445667889999999999999999888887755555555554444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-21 Score=204.33 Aligned_cols=352 Identities=17% Similarity=0.158 Sum_probs=218.6
Q ss_pred HHHHHhhhhhhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHHhhhccCHH-HHHHHHHHHHhhhhchhhHHHHHHhcccCc
Q 008070 215 AFLLCNMDRIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLP-FLLIMRAFMGIGEGVAMPAMNNMLSKWIPV 292 (579)
Q Consensus 215 ~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~-~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~ 292 (579)
.....++..+++|+++|| +|||++++++.+++.++.++++++. +.. .+++.|+++|+|.|...+...+++.|++|+
T Consensus 59 ~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~ 136 (489)
T PRK10207 59 FAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPP 136 (489)
T ss_pred HHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence 333444455789999999 9999999999999999999999987 433 455899999999999999999999999987
Q ss_pred C--chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCC----CChhhcHHHHhhh
Q 008070 293 S--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK----EDPELRAEEKRHI 366 (579)
Q Consensus 293 ~--~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~----~~~~~~~~~~~~~ 366 (579)
+ +|+++++++..+.++|..+||.+++++.+++|||+.|++.++. ++..++.+...++..+ +..+...+.....
T Consensus 137 ~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 215 (489)
T PRK10207 137 KDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLL 215 (489)
T ss_pred CchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcchhhcccCCCCCccchhhhhHH
Confidence 6 4578999999999999999999999999999999999986543 3323322222221110 1101000000000
Q ss_pred ---------------hcCCccccc---------------ccchhHHHHhhchHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 008070 367 ---------------LGGSISKEA---------------VSVIPWKLILSKAPVWALIIS--HFCHNWGTFILLTWMPTY 414 (579)
Q Consensus 367 ---------------~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~l~--~~~~~~~~~~~~~~~p~~ 414 (579)
......... .........+|++.+....+. ..+.+..+....+.++.|
T Consensus 216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~ 295 (489)
T PRK10207 216 LVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFF 295 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 000000000 000000124455554433322 333444445555677778
Q ss_pred HHHhhCCCh----hhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCc-------chHHHHHHHHHHHHHHHHHHHH-Hh-h
Q 008070 415 YNQVLKFNL----TESGLFCVLPWLTMAVFANMGGWIADTLVSKGL-------SITAVRKIMQSIGFLGPAFFLT-QL-S 481 (579)
Q Consensus 415 l~~~~g~s~----~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~-~ 481 (579)
.++..+.+. .....+.....+..++..++.+++.||+++|+. +..+. .+..++++....... .. .
T Consensus 296 ~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~--~l~~~~~~~~~~~~~~~~~~ 373 (489)
T PRK10207 296 AINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGM--FLCSLGFLTAAAAGMWFADA 373 (489)
T ss_pred HHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHH--HHHHHHHHHHHHHHHhhcCC
Confidence 775333211 012334444556666778888999999998863 22222 222222222111111 11 1
Q ss_pred --ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCC
Q 008070 482 --HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ----------RGS 549 (579)
Q Consensus 482 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~----------~~g 549 (579)
..+.++.+...++.+.+.....++......+..|++.+|.++|+.+....+|+.++..+...... ...
T Consensus 374 ~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~ 453 (489)
T PRK10207 374 QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPV 453 (489)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhh
Confidence 12234444455556666666666667777778899999999999999999999999888876531 113
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+...|...++..+++.+++++.
T Consensus 454 ~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 454 YTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777766666555553
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-20 Score=192.12 Aligned_cols=358 Identities=16% Similarity=0.115 Sum_probs=264.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHH-HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLG-FGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~-~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
-......++..+...+..|+.|.++|+.|+||.++ +..++..+++.++.+.+..+++..++.-++.-++.+......++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777788888888899999999998776644 44555556666666654335666667777777888888999999
Q ss_pred HHhcccCcCch--------------------------hHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cCcchHH
Q 008070 285 MLSKWIPVSER--------------------------SRSLAFVYSGMYLGSVTGLAVSPILIQK--------FGWPSVF 330 (579)
Q Consensus 285 ~i~~~~~~~~r--------------------------~~~~g~~~~~~~lG~~lgp~i~~~l~~~--------~gwr~~f 330 (579)
++.++.+++++ ++..+.-.....+|.++.-++.-.+... .+-|..+
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999998888 8999998888899998887776655422 2358888
Q ss_pred HHhhHHHHHHHHHHHhhhcCCCCCCh-hhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 008070 331 YSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT 409 (579)
Q Consensus 331 ~i~~~~~li~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 409 (579)
.+.++.-++..+..++..|++|+... +........- -++-...++++.+.|.+..+++..+++.-+..++..
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g-------~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~ 302 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFG-------FKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS 302 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHH-------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887765211 1111100000 001113467778889999999999999999999999
Q ss_pred HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhcc--CcchHHHHHHHHHHHHHHHHHHHH-----Hhhc
Q 008070 410 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSK--GLSITAVRKIMQSIGFLGPAFFLT-----QLSH 482 (579)
Q Consensus 410 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 482 (579)
....|.++++|++..+...+..+..+.+++|.++.|++.||+|.| +++.... ....++....++ ....
T Consensus 303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l-----~~~~~i~~~g~~G~~~~~~g~ 377 (477)
T PF11700_consen 303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL-----ILWIIIPLYGLFGFWPSFFGL 377 (477)
T ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH-----HHHHHHHHHHHHHhhhcccCc
Confidence 999999999999999999999999999999999999999999998 5543221 111111111111 1122
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 008070 483 VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLY 561 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~ 561 (579)
.+.+...++.+..+.+.+......-..+.+.+|+++.+..+|++.+.....+.+||++.|.+.+..| .+..+....++.
T Consensus 378 ~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf 457 (477)
T PF11700_consen 378 KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLF 457 (477)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3334444444555555555555566667777899999999999999999999999999999999865 889999999999
Q ss_pred HHHHHHHHHhhcCc
Q 008070 562 IIGTLVWNLFATGE 575 (579)
Q Consensus 562 ~l~~~~~~~~~~~~ 575 (579)
+++++++..+..++
T Consensus 458 ~~gl~ll~~v~~~~ 471 (477)
T PF11700_consen 458 LIGLILLFFVDVEK 471 (477)
T ss_pred HHHHHHHhhccchh
Confidence 99988887775544
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=199.47 Aligned_cols=314 Identities=16% Similarity=0.186 Sum_probs=211.9
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 303 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~ 303 (579)
++.|+++|.||||++++.+.++..+|.++++-++ |...++.+..+.|+|.|.... ....++|..|.|.|....++..
T Consensus 96 ~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~ 172 (599)
T PF06609_consen 96 PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--NMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIAS 172 (599)
T ss_pred HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--cHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHH
Confidence 8999999999999999999999999999999999 899999999999999876654 4566899999999988887777
Q ss_pred HHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC--hh-hcHHH-Hhhh-h-----------
Q 008070 304 SGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED--PE-LRAEE-KRHI-L----------- 367 (579)
Q Consensus 304 ~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~--~~-~~~~~-~~~~-~----------- 367 (579)
...-+....++.++..+..+.+|||.|++.+++..+.+++.+++..+++++. .+ ....+ -.+. .
T Consensus 173 ~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~ 252 (599)
T PF06609_consen 173 IPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLA 252 (599)
T ss_pred HHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666678888887777789999999998887776555444333222111 11 11111 0000 0
Q ss_pred --------cCCc--------------------------c---cccccchhHHHHhhc-hHHHHHHHHHHHHHHHHHHHHH
Q 008070 368 --------GGSI--------------------------S---KEAVSVIPWKLILSK-APVWALIISHFCHNWGTFILLT 409 (579)
Q Consensus 368 --------~~~~--------------------------~---~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~ 409 (579)
.... + ..+.+..|.+ ++++ +.+...++..++....++....
T Consensus 253 LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~-Lf~~~r~~~~~lvi~fi~G~~~~s~~~ 331 (599)
T PF06609_consen 253 LFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHR-LFKDRRGFAALLVISFISGMNFFSVNI 331 (599)
T ss_pred HHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHH-HhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0100 0 0112233444 6666 5566667777777777888888
Q ss_pred HHHHHHHHhhCCChh---hhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 008070 410 WMPTYYNQVLKFNLT---ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP 486 (579)
Q Consensus 410 ~~p~~l~~~~g~s~~---~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (579)
+.|......++-++. ..++.....+++..+|.++.|.+..++++.|...+.. .+.+......+......+..
T Consensus 332 l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~-----~~~~ta~~Gama~~~~~n~~ 406 (599)
T PF06609_consen 332 LWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFG-----SVLMTAFCGAMAAVRPDNKN 406 (599)
T ss_pred HHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHH-----HHHHHHHHHHHHHccCCCcc
Confidence 889888877776653 5677778888889999999999999888776543211 11111111111122222222
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 487 AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
......++.+.+.+....+......-..|+++.|++.|+...++.+|+.+|..+...++.
T Consensus 407 ~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 407 AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223333333444444444444444445788999999999999999999999988866654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=217.71 Aligned_cols=241 Identities=15% Similarity=0.171 Sum_probs=185.9
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh------------------------------------
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA------------------------------------ 257 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~------------------------------------ 257 (579)
...++..+..++.|++.||+|||+++.++.++++++.+++++.+
T Consensus 76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 155 (633)
T TIGR00805 76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP 155 (633)
T ss_pred hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence 33444445559999999999999999999999999999988763
Q ss_pred -------------ccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008070 258 -------------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF 324 (579)
Q Consensus 258 -------------~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~ 324 (579)
+..+..++++|+++|+|.+..++...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 1125567899999999999999999999999999999999999999999999999999999987643
Q ss_pred ----------------------CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc--HHHHhhhhc-CCcc------c
Q 008070 325 ----------------------GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR--AEEKRHILG-GSIS------K 373 (579)
Q Consensus 325 ----------------------gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~------~ 373 (579)
+|+..|++.+++.++..+++++++++.|+...+.+ ..+...... .... .
T Consensus 236 ~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (633)
T TIGR00805 236 VDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDI 315 (633)
T ss_pred cccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhh
Confidence 26777888888877766655555444343211111 000000000 0000 0
Q ss_pred ccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH-HHHHHHHHHHHHhhhhh
Q 008070 374 EAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLV 452 (579)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~ig~~~~g~l~dr~g 452 (579)
.......++.++++|.++...+..++.....+++.+|+|.|+++.+|+++.+++++..+..+ +.+++.+++|++.||++
T Consensus 316 ~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~ 395 (633)
T TIGR00805 316 TKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFK 395 (633)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeec
Confidence 01112346778999999999999999999999999999999999999999999999887776 56889999999999998
Q ss_pred cc
Q 008070 453 SK 454 (579)
Q Consensus 453 ~~ 454 (579)
.+
T Consensus 396 ~~ 397 (633)
T TIGR00805 396 LN 397 (633)
T ss_pred cc
Confidence 54
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-21 Score=204.86 Aligned_cols=365 Identities=14% Similarity=0.095 Sum_probs=243.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
....++.+...++..++.++.|+++|++|||+.++++.+++.++.+++++++ ++++++++|+++|+|.|........+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy 166 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVY 166 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhh
Confidence 3457788888889999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh-cHHHH
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL-RAEEK 363 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~-~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~-~~~~~ 363 (579)
++|..|++.||...+..+....+|..++..++....+. .+||..+.+..+.+++..+. +++.||+|+.--+. +.++.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a 245 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEA 245 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHH
Confidence 99999999999999999999999999996555554432 48999999888888887777 77777777532111 01000
Q ss_pred ----hhhhcCCcccc-----------------cccchhHHHHh----hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 364 ----RHILGGSISKE-----------------AVSVIPWKLIL----SKAPVWALIISHFCHNWGTFILLTWMPTYYNQV 418 (579)
Q Consensus 364 ----~~~~~~~~~~~-----------------~~~~~~~~~l~----~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~ 418 (579)
.........+. ......++.++ +++.++...+..+....+......|.+.+++.
T Consensus 246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~- 324 (513)
T KOG0254|consen 246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKS- 324 (513)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHh-
Confidence 00011000000 00000122222 23344556666666666667777888888877
Q ss_pred hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh---ccchhH--HHHHHH
Q 008070 419 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS---HVRTPA--MAVLCM 493 (579)
Q Consensus 419 ~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~ 493 (579)
.|.+... .....+.++..+++.++..++.||+|||+++..+...+.++..++.......... .....+ +...++
T Consensus 325 ~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
T KOG0254|consen 325 AGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCL 403 (513)
T ss_pred cCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHH
Confidence 4666443 4445566777788888889999999999888776533333333332222221111 111122 222223
Q ss_pred HHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-HHHHhh
Q 008070 494 ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTL-VWNLFA 572 (579)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~-~~~~~~ 572 (579)
....+..+..+.......+.+|.+.|+++.++...+..+...+-....-.+.+..+....|.+.+.++.+..+ ..++..
T Consensus 404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~ 483 (513)
T KOG0254|consen 404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFV 483 (513)
T ss_pred HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEc
Confidence 3333333333444434556677799999999999999988888777776666665434444444444444444 344444
Q ss_pred cCc
Q 008070 573 TGE 575 (579)
Q Consensus 573 ~~~ 575 (579)
++.
T Consensus 484 pET 486 (513)
T KOG0254|consen 484 PET 486 (513)
T ss_pred ccC
Confidence 433
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-19 Score=191.85 Aligned_cols=349 Identities=13% Similarity=0.047 Sum_probs=223.6
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHH
Q 008070 203 PKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 203 ~~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
...+...+..++.+++..++.+++|+++||+|||+++++++++..++.++.++++ |++.+++.|++.|++.+......
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--NYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHhhccchhHHh
Confidence 4678888999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc---
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR--- 359 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~--- 359 (579)
..++.|++++++|+.+..+ ......++.+++++++++.. +|||.+++..+..++.+++ +++.+|.|+......
T Consensus 193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~ 268 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRID 268 (521)
T ss_pred HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchH
Confidence 9999999999999999999 88888888888888888887 8999999999888876666 555556664211110
Q ss_pred --HHHHhhhhc----CCc---------------ccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 360 --AEEKRHILG----GSI---------------SKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV 418 (579)
Q Consensus 360 --~~~~~~~~~----~~~---------------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~ 418 (579)
.+..+...+ ... .....+...+..+++.|.+....+...+..+.......-++.....
T Consensus 269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~- 347 (521)
T KOG0255|consen 269 EAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSG- 347 (521)
T ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhh-
Confidence 000000000 000 0000111335566677655444444444443332222223333332
Q ss_pred hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhh
Q 008070 419 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQG 498 (579)
Q Consensus 419 ~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (579)
+|.+.. ......+.....+....+...|++|||.....+. .+..++++..++ .......++......++.+
T Consensus 348 lg~~~~---~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 418 (521)
T KOG0255|consen 348 LGGNIY---LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSL--FLAGIGLLLFGW----LPDDLGGWLHWILPLLGKF 418 (521)
T ss_pred cCchHH---HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHH----hhccchhHHHHHHHHHHHH
Confidence 454433 3333444466667777789999998885443221 111111111111 1111110122222222222
Q ss_pred hhhh-hhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 008070 499 SDAF-SQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~ 568 (579)
.... .........+..|...|..+.+.......++.+++|.+.-.... ......+...+.+..+..++.
T Consensus 419 ~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 488 (521)
T KOG0255|consen 419 FIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLS 488 (521)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHH
Confidence 2222 23333334555677889999999999999999999998865544 222222222344444444444
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=176.83 Aligned_cols=349 Identities=17% Similarity=0.179 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcc
Q 008070 210 LLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289 (579)
Q Consensus 210 ~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~ 289 (579)
++....+.+..+++..+|.++|++|||+.+.+..+..++..++.+.++ |+..+++.|.+.|+|.|+ .|...++-.+.
T Consensus 117 llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~sp--nf~~L~~f~~l~~~g~gg-~pv~~~~yle~ 193 (528)
T KOG0253|consen 117 LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASP--NFASLCVFRALWGFGVGG-LPVDSAIYLEF 193 (528)
T ss_pred HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCC--CeehhhHHHHHHhccCCC-ccHhHHHHHHh
Confidence 444455666777779999999999999999999999999999999999 899999999999999998 88888999999
Q ss_pred cCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH-----HHHh
Q 008070 290 IPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-----EEKR 364 (579)
Q Consensus 290 ~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~-----~~~~ 364 (579)
.|..+|...+-.. ..+.+|.+....+.-.++.++||||........ +..++...+..+|+|+-.-.... +..+
T Consensus 194 lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~p-l~~~a~f~~w~~ESpRf~~~~G~~~kAletL~ 271 (528)
T KOG0253|consen 194 LPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTP-LMFAARFLVWVYESPRFYLAKGDDYKALETLH 271 (528)
T ss_pred ccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhH-HHHHHHHHhhcccCcchhhhcCChHHHHHHHH
Confidence 9988898877766 899999999999999999999999988877744 44455566667777752211100 0000
Q ss_pred hhhc--C--------------------------CcccccccchhHHHHhh---chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 365 HILG--G--------------------------SISKEAVSVIPWKLILS---KAPVWALIISHFCHNWGTFILLTWMPT 413 (579)
Q Consensus 365 ~~~~--~--------------------------~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~ 413 (579)
++.+ + .....+........++. ++..+.+....|...+.+|+.......
T Consensus 272 kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLltte 351 (528)
T KOG0253|consen 272 KIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTE 351 (528)
T ss_pred HHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0000 0 00000111112222221 122233333444444445444333333
Q ss_pred HHHHh-----------------hC--CChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHH
Q 008070 414 YYNQV-----------------LK--FNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPA 474 (579)
Q Consensus 414 ~l~~~-----------------~g--~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 474 (579)
..+.. .+ .+...--.-..+..+....|.++.++++||+|||+.+. ..++..+
T Consensus 352 lfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMa---------l~l~~f~ 422 (528)
T KOG0253|consen 352 LFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMA---------LSLILFG 422 (528)
T ss_pred HHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHH---------HHHHHHH
Confidence 32221 00 01111112234556788899999999999999997432 2222222
Q ss_pred HHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 008070 475 FFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDV 553 (579)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~ 553 (579)
++++............+..+.+-++........+.+..++.| ..|+++.|....+..+|+++.|+++ +....+....
T Consensus 423 iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~ 500 (528)
T KOG0253|consen 423 IFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLP 500 (528)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeeh
Confidence 222222111111122222223333333444555555555555 8899999999999999999999998 4333444555
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 008070 554 FKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 554 ~~~~~~~~~l~~~~~~~~~~~ 574 (579)
..+.+++++++.++..++.-+
T Consensus 501 i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 501 IFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred HHHHHHHHHHHHHHheeeeec
Confidence 556666666666665555443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-19 Score=181.05 Aligned_cols=276 Identities=11% Similarity=0.030 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------
Q 008070 260 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK---------------- 323 (579)
Q Consensus 260 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~---------------- 323 (579)
+++.+++.-++.|.|.+...+..+.++++..++|++++.+++.+...++|.+++|++++.++..
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~ 88 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA 88 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence 6899999999999999999999999999999999999999999999999999999999988732
Q ss_pred cCcchHHHHhhHHHHHHHHHHHhhh-cCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHH
Q 008070 324 FGWPSVFYSFGSLGSIWFALWLKKA-YSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNW 402 (579)
Q Consensus 324 ~gwr~~f~i~~~~~li~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 402 (579)
..|+++|++.+.+.++..+++.+.. |+.++++ .++... ++. ...+.++++|.++...+..+++..
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~---~~~~~~--------~~~---~~~~~~~~~~~~~l~~~~~f~yvg 154 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD---VARVSS--------GDT---TQKTSAFQFTHLVLGALGIFVYVG 154 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc---cccccc--------ccc---cchhhHHhhHHHHHHHHHHHHHHH
Confidence 4699999977777655554444332 2211111 000000 000 012236778888888888888888
Q ss_pred HHHHHHHHHHHHHHHh--hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHh
Q 008070 403 GTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL 480 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (579)
...++..|++.|+.+. +|+++.+.+...+...++.++|+++.+++.||+++++.+..+. .+..+.. .+...
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~-----~l~~~~~--~l~~~ 227 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA-----FLAVLLS--IGAAL 227 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH-----HHHHHHH--HHHHH
Confidence 8999999999999864 6999999999999999999999999999999999887543221 1111111 11111
Q ss_pred hccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008070 481 SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVL 560 (579)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~ 560 (579)
.. ..........++.+.....+.......+.. +++.+++.++. .+..+|++++|++.|.+.|..|.+.+|++..++
T Consensus 228 ~~--~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~-~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 228 TH--GYVAMWFVLALGLFNSIMFPTIFSLALNAL-GRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred cC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 11 122222333444444444444444444443 44566777775 677899999999999999998988887754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=183.01 Aligned_cols=322 Identities=15% Similarity=0.121 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhh----cCC-cHHHHHHHHHHHHHHHHHHhhhccC----HHHHHHHHHHHHhhh
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTPVAARIG----LPFLLIMRAFMGIGE 275 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr----~Gr-r~~l~~~~~~~~~~~ll~~~a~~~~----~~~ll~~r~l~Gig~ 275 (579)
...++.+..+..+...+..|+.|+++|| +|| |+.++++.+..+++.++....+..+ +..+++..++.+++.
T Consensus 44 ~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~ 123 (444)
T PRK09669 44 AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVY 123 (444)
T ss_pred HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 3456777888888888999999999998 777 4567778788877776665554211 355666677778777
Q ss_pred hchhhHHHHHHhccc-CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 276 GVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 276 g~~~~~~~~~i~~~~-~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-------~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
+....+..++.+|+. ++++|.+..++...+..+|..+++.+...+.. ..+|+..+.+.+++.++..++.++.
T Consensus 124 t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 124 TAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred HhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 778888889999998 46889999999988888888887765554432 2468888888887777766655555
Q ss_pred hcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhh
Q 008070 348 AYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESG 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g 427 (579)
.+|++++.++. +......++.+++|+.++.+++..++............+.|.+...+ ++...+
T Consensus 204 ~~e~~~~~~~~---------------~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~ 267 (444)
T PRK09669 204 TKERYTPEVDN---------------SSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLAT 267 (444)
T ss_pred eEEecCCCCcC---------------CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHH
Confidence 44432211100 01112356778899999988887777666665555555555554443 333444
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHhhhhhhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA-MAVLCMACSQGSDAFSQSG 506 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 506 (579)
.+.....+..+++.++.+++.||+|+|+....+. +........+.... ....+ ..+...+.+.+.. ...+.
T Consensus 268 ~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~i~g~~~~-~~~~~ 339 (444)
T PRK09669 268 LFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTI------VAFVILSALIFFIP-PSNVWLIFALNILFNFIQN-LTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH------HHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHHH-HHHHH
Confidence 4555556778888889999999999987544321 11111111111122 22233 2222233333332 33333
Q ss_pred hhhhcccc--------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 507 LYSNHQDI--------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 507 ~~~~~~~~--------~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
......++ ..+..|..+|+.+++..+|.++|+.+.|.+.+..||
T Consensus 340 ~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33333222 234568889999999999999999999999998776
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-18 Score=181.54 Aligned_cols=343 Identities=16% Similarity=0.145 Sum_probs=199.6
Q ss_pred hhhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCc--hhHHH
Q 008070 223 RIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE--RSRSL 299 (579)
Q Consensus 223 ~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~--r~~~~ 299 (579)
.+++|+++|| +|||++++++.++.+++.++++++++ +.+.+++.++++|++.|...+...+++.+++|+++ |..++
T Consensus 74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~ 152 (500)
T PRK09584 74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF 152 (500)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence 3689999999 59999999999999999999988752 45667788999999999999999999999997543 45688
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHH---HHHhhhcCCCCCChh--hcHHHHh----------
Q 008070 300 AFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFA---LWLKKAYSSPKEDPE--LRAEEKR---------- 364 (579)
Q Consensus 300 g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~---l~~~~~~~~~~~~~~--~~~~~~~---------- 364 (579)
+++..+.++|..+||++++++.+.+|||+.|++.++..++..+ ......++..++... .+.....
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALI 232 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987754444332 222233332111110 0000000
Q ss_pred ----hhhcCCccccc-----------c---cchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhCCCh-
Q 008070 365 ----HILGGSISKEA-----------V---SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ--VLKFNL- 423 (579)
Q Consensus 365 ----~~~~~~~~~~~-----------~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~--~~g~s~- 423 (579)
........... . ......+.- +++.+..++ .++....++......+.++.. ....+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~ 310 (500)
T PRK09584 233 AIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAA-RRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHS 310 (500)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhcccc
Confidence 00000000000 0 000001111 222222222 223334444555555555443 111221
Q ss_pred -----hhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh--------ccchhHHHH
Q 008070 424 -----TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS--------HVRTPAMAV 490 (579)
Q Consensus 424 -----~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 490 (579)
...+++.++..+..++..++.+++-+|.++|.... ..+..+..+...++...... ..+.++.+.
T Consensus 311 ~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~---~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~ 387 (500)
T PRK09584 311 ILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMP---HKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIA 387 (500)
T ss_pred ccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHH
Confidence 12455666666666677666666666665542111 11222222222222221111 112335555
Q ss_pred HHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCChHHHHHHHHHH
Q 008070 491 LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ----------RGSWDDVFKVAVVL 560 (579)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~----------~~g~~~~~~~~~~~ 560 (579)
...+.+.+.....+.......+..|++.||+++|+......+|..++..+.+.... ..++...|...++.
T Consensus 388 ~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 467 (500)
T PRK09584 388 SYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIA 467 (500)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHH
Confidence 55556666666666666666677888999999998776666666666665543221 12477888888877
Q ss_pred HHHHHHHHHHh
Q 008070 561 YIIGTLVWNLF 571 (579)
Q Consensus 561 ~~l~~~~~~~~ 571 (579)
.++..++++++
T Consensus 468 ~~~~a~~~~~~ 478 (500)
T PRK09584 468 TAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHHHH
Confidence 66555444443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-18 Score=173.83 Aligned_cols=344 Identities=14% Similarity=0.156 Sum_probs=230.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhcC-CcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHH
Q 008070 204 KRWVVVLLCFSAFLLCNMDRIVGGIWADKFG-GKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 204 ~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
..+.++.+.++..+...+..+++|.++||++ +|+++.+..++.++..++....+ +++.+++..++..+......|..
T Consensus 35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~--~f~~~~~~~~l~~~~~~p~~pl~ 112 (400)
T PF03825_consen 35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSS--SFWWLFVIMLLFSFFFSPTMPLS 112 (400)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHccHHHHH
Confidence 4577899999999999999999999999986 56777777777777776677776 78888888888888888888999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHH-HHHhhcccC---cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV-SPILIQKFG---WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i-~~~l~~~~g---wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.++.-+... +++.-.|......++|.+++... ++.+....+ ..+.+++.+...++.....+ ..|+.|.++...
T Consensus 113 dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~~~~~ 189 (400)
T PF03825_consen 113 DSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPKRSAK 189 (400)
T ss_pred HHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccccccC
Confidence 998888874 45566777777788888777554 233333333 23455555555444333333 344444221111
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 438 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ 438 (579)
...++ ....+..+++|+|+++.+.+..++..........+.+.|+++..|.+....+.+.++..++.+
T Consensus 190 ~~~~~------------~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi 257 (400)
T PF03825_consen 190 ESVKK------------LLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEI 257 (400)
T ss_pred CCccc------------ccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 10000 011123458999999999999999998999999999999999534777888888888888999
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHH----HHHhhhhhhhhhhhhhhcc
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV--RTPAMAVLCM----ACSQGSDAFSQSGLYSNHQ 512 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 512 (579)
+.-.+.+++.+|+|.++++ .++.+..++-....... +.+....... .-+...............+
T Consensus 258 ~~f~~~~~~~~r~g~~~ll---------~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~ 328 (400)
T PF03825_consen 258 PFFFFSGRFLKRFGIKWLL---------LLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDR 328 (400)
T ss_pred HHHHHHHHHHHhcCHHHHH---------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988543 23333333332222222 2222222111 1233333334444444556
Q ss_pred ccCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHHHHHhhc
Q 008070 513 DIGPRYAGVLLGLSNTA-GVLAGVFGTAATGYILQRGSWDD------VFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 513 ~~~~~~~g~~~g~~~~~-~~lg~~ig~~l~g~l~~~~g~~~------~~~~~~~~~~l~~~~~~~~~~ 573 (579)
..|++.++++.|+++.. ..+|..+|..++|+++|+.|.+. .+.+.+++.++..+++.++-|
T Consensus 329 ~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 329 IAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred hCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67889999999998876 57899999999999999876553 445555555555544444433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-19 Score=179.32 Aligned_cols=348 Identities=12% Similarity=0.081 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
...+....+..+.+..+++|+++||+|.|+++.++.+.+++..+++++++ ++..+.+.|++.|++.|... +...++.
T Consensus 64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L~i~R~llGvaEA~~~-A~~syI~ 140 (511)
T TIGR00806 64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHMQLMEVFYSVTMAARI-AYSSYIF 140 (511)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 56777778888888999999999999999999999999999999999998 89999999999999999999 9999999
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhh--HHHHHHHHHHHhhhcCCCCC-----Chhhc-
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG--SLGSIWFALWLKKAYSSPKE-----DPELR- 359 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~--~~~li~~~l~~~~~~~~~~~-----~~~~~- 359 (579)
.|+|+++|+++.++...+..+|.+++++++++ +..+|||+-+.+.- +...+..+++.+++|..++. .+..+
T Consensus 141 ~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~ 219 (511)
T TIGR00806 141 SLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRG 219 (511)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhcccccccc
Confidence 99999999999999999999999999999999 55689998655432 22223333333444433221 00000
Q ss_pred --HHHHhhhhcC-C--ccc--cc-------ccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh
Q 008070 360 --AEEKRHILGG-S--ISK--EA-------VSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE 425 (579)
Q Consensus 360 --~~~~~~~~~~-~--~~~--~~-------~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~ 425 (579)
..+.+....+ . ..+ +. .-...++...+|+.++...+-..+...+++-+.+|......+..+-.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~y 299 (511)
T TIGR00806 220 ALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKY 299 (511)
T ss_pred ccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCcccc
Confidence 0000000000 0 000 00 01123455577888888888888888888888888887777653322235
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhh
Q 008070 426 SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQS 505 (579)
Q Consensus 426 ~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (579)
-|..-++..+.+.+..+..|++-.++.+... +.+.+..++-+..++.....++.++..+.+++......+..+
T Consensus 300 NG~veA~~tllga~~a~~ag~~~~~w~~~~~-------l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flit 372 (511)
T TIGR00806 300 NGAVDAASTLLGAITSFIAGFVNIRWARWSK-------LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVP 372 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCchhhHH-------HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888899999998555433211 333344344444455555666777776666665555554444
Q ss_pred hhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHH----HHHHhc----CChHHHHHHHHHHHHHHHH
Q 008070 506 GLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT----GYILQR----GSWDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 506 ~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~----g~l~~~----~g~~~~~~~~~~~~~l~~~ 566 (579)
.... +...+..+..|-.+|+++++..+-..+-..+. |.-.+. .=|..-|.+.+++.++..+
T Consensus 373 ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVvd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~ 442 (511)
T TIGR00806 373 IATFQIASSLSKELCALVFGINTFVATALKTIITAVVSDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG 442 (511)
T ss_pred HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEEcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence 4333 55556677779999998877666555544332 221111 1244455555655555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-18 Score=176.52 Aligned_cols=362 Identities=13% Similarity=0.069 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh----hcCCcHHHHHH-HHHHHHHHHHHHhhhccCH-----------------HH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWAD----KFGGKPVLGFG-VIWWSVATVLTPVAARIGL-----------------PF 263 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~D----r~Grr~~l~~~-~~~~~~~~ll~~~a~~~~~-----------------~~ 263 (579)
..+..+..+..+...+.+|+.|+++| |+|||+.++++ .+...++.+++++++ +. +.
T Consensus 39 ~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~--~~~~~~~~~~~~~~~~~~i~~ 116 (477)
T TIGR01301 39 AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAA--DIGHLFGDNLDKKTKPRAIIV 116 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCc--hhhhhccccccccchhHHHHH
Confidence 45566666777888888999999999 59999987764 666677777777766 32 22
Q ss_pred HHHHHHHHHhhhhchhhHHHHHHhcccCcCch--hHHHHHHHHHHHHHHHHHHHHHHHh--hccc-------------Cc
Q 008070 264 LLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER--SRSLAFVYSGMYLGSVTGLAVSPIL--IQKF-------------GW 326 (579)
Q Consensus 264 ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r--~~~~g~~~~~~~lG~~lgp~i~~~l--~~~~-------------gw 326 (579)
++++-.+..++.....++..++++|.+|+++| +.++++.+.+.++|.++|+.++++. ...+ +.
T Consensus 117 ~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 196 (477)
T TIGR01301 117 FVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANL 196 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchH
Confidence 23333445567788888999999999998765 6899999999999999999999875 2211 56
Q ss_pred chHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhh-----chHHHHHHHHHHHHH
Q 008070 327 PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILS-----KAPVWALIISHFCHN 401 (579)
Q Consensus 327 r~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~~~ 401 (579)
++.|++.+++.++..++..+..+|.|...++...+++. +. .++......++++++ .+.++.+++..++.+
T Consensus 197 ~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW 271 (477)
T TIGR01301 197 KSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA---AP--PSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNW 271 (477)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc---cc--ccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 88999988888888888888887765422211110000 00 000001112333332 366899999999999
Q ss_pred HHHHHHHHHHHHHHHH-hhCCChh------h----hhHHhHHHHHHHHHHHHHHHHHhhhhhc-cCcchHHHHHHHHHHH
Q 008070 402 WGTFILLTWMPTYYNQ-VLKFNLT------E----SGLFCVLPWLTMAVFANMGGWIADTLVS-KGLSITAVRKIMQSIG 469 (579)
Q Consensus 402 ~~~~~~~~~~p~~l~~-~~g~s~~------~----~g~~~~~~~~~~~ig~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~ 469 (579)
++++.+..|.+.|..+ .++-++. + ..+......+...+.+++..++.+|+|+ |+....+. .+.+++
T Consensus 272 ~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~--~~~~~~ 349 (477)
T TIGR01301 272 IAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVN--IILAIC 349 (477)
T ss_pred HHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHH
Confidence 9999999999888764 4554321 1 1233444555556777788889999985 43323221 222222
Q ss_pred HHHHHHHHHHhh---c----------c-c-hhHHHHHHHHHHhhhhhhhhhhhhhhccccCC--CchhHHHHHHHHHHHH
Q 008070 470 FLGPAFFLTQLS---H----------V-R-TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP--RYAGVLLGLSNTAGVL 532 (579)
Q Consensus 470 ~~~~~~~~~~~~---~----------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~l 532 (579)
+....+.-.... . . . ....++.+..+|...............+..++ +..|..+|+.|.+..+
T Consensus 350 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~l 429 (477)
T TIGR01301 350 LAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVI 429 (477)
T ss_pred HHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHH
Confidence 222211110000 0 0 0 13333444444444444444444445555563 5669999999999999
Q ss_pred HHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 008070 533 AGVFGTAATGYILQRG--SWDDVFKVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 533 g~~ig~~l~g~l~~~~--g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
.+.+.....|.+.+.. +...++.+.++.++++.++.++..++.+
T Consensus 430 pQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 430 PQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999866653 4667788888888888887777666544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=186.53 Aligned_cols=355 Identities=14% Similarity=0.119 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccC-----HHHHHHHHHHHHhhhhchhhH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIG-----LPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~-----~~~ll~~r~l~Gig~g~~~~~ 281 (579)
....+...++++..+++++.|++.||+|||+++...++++.++++++++....+ ++++.+.|++.|+|.|+.+|.
T Consensus 85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPl 164 (538)
T KOG0252|consen 85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPL 164 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcc
Confidence 446777888999999999999999999999999999999999999887764211 467899999999999999999
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------cCcchHHHHhhHHHHHHHHHHHh
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK---------------FGWPSVFYSFGSLGSIWFALWLK 346 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~---------------~gwr~~f~i~~~~~li~~~l~~~ 346 (579)
..+..+|...+++||...+.+.+..++|.+.|.+++-.+..- .=||..|.+.++.+++++.. -.
T Consensus 165 SAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~-Rl 243 (538)
T KOG0252|consen 165 SATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYF-RL 243 (538)
T ss_pred hHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHh-hh
Confidence 999999999999999999998888888888877776655421 12998888776666554433 33
Q ss_pred hhcCCCCCChhh--cHH-HHhhhhcC----------Ccccccccc---hhHHHHhh-c--hHHHHHHHHHHHHHHHHHHH
Q 008070 347 KAYSSPKEDPEL--RAE-EKRHILGG----------SISKEAVSV---IPWKLILS-K--APVWALIISHFCHNWGTFIL 407 (579)
Q Consensus 347 ~~~~~~~~~~~~--~~~-~~~~~~~~----------~~~~~~~~~---~~~~~l~~-~--~~~~~~~l~~~~~~~~~~~~ 407 (579)
..||+++-.... +.+ ...+..+. .....+.+. ..+...+. . +.+...+...|+.-.++|..
T Consensus 244 ~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~ 323 (538)
T KOG0252|consen 244 KMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQ 323 (538)
T ss_pred cCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 344443322000 000 00000000 000000011 11222222 2 45666677788888888888
Q ss_pred HHHHHHHHHHhhCCChhhhhH--------HhHHHH-HHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHH
Q 008070 408 LTWMPTYYNQVLKFNLTESGL--------FCVLPW-LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT 478 (579)
Q Consensus 408 ~~~~p~~l~~~~g~s~~~~g~--------~~~~~~-~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (579)
..+...++.. .|+.+..... ...+.. .+.+.|..+..+++|++||+.+...+ +++..++.+
T Consensus 324 nL~~s~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G---------F~~~~i~~~ 393 (538)
T KOG0252|consen 324 NLFQSVIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG---------FFIMTIFFF 393 (538)
T ss_pred ccHHHHHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh---------HHHHHHHHH
Confidence 8888888876 5665544333 111112 22333555666789999999654433 222222222
Q ss_pred Hhhccc----hhHHHHHHHHHHhhhhhhhhhh-hhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh-----c
Q 008070 479 QLSHVR----TPAMAVLCMACSQGSDAFSQSG-LYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-----R 547 (579)
Q Consensus 479 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~-----~ 547 (579)
...... ......++..+..++..+.+.. ... ..+.+|.+.||+..|+..+.+.+|++++...++++.+ .
T Consensus 394 ~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~ 473 (538)
T KOG0252|consen 394 VIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPN 473 (538)
T ss_pred HHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcc
Confidence 221111 1122222333333333333322 222 3445666999999999999999999999999999999 7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 548 GSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 548 ~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
.|.+.++++.+++++++.++.+++.
T Consensus 474 ~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 474 IGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred ccchHHHHHHHHHHHHhHheeEEee
Confidence 8999999999999999998877765
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=181.59 Aligned_cols=325 Identities=18% Similarity=0.263 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh----hcCCcH-HHHHHHHHHHHHHHHHHhh-h-cc----CHHHHHHHHHHHHhh
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWAD----KFGGKP-VLGFGVIWWSVATVLTPVA-A-RI----GLPFLLIMRAFMGIG 274 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~D----r~Grr~-~l~~~~~~~~~~~ll~~~a-~-~~----~~~~ll~~r~l~Gig 274 (579)
..++++....-+...+..|+.|.++| |+|||+ .++++.+..+++.+++... + +. ...++++..++..++
T Consensus 37 ~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~ 116 (428)
T PF13347_consen 37 ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIA 116 (428)
T ss_pred HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 56677777778888888999999999 799765 4667888888888887766 3 11 123457777777999
Q ss_pred hhchhhHHHHHHhcccC-cCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CcchHHHHhhHHHHHHHHHHHh
Q 008070 275 EGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-------GWPSVFYSFGSLGSIWFALWLK 346 (579)
Q Consensus 275 ~g~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-------gwr~~f~i~~~~~li~~~l~~~ 346 (579)
......+..++..|+.+ +++|.+..+....+..+|.++...+.+.+.+.+ +|++..++.+++.++..++..+
T Consensus 117 ~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~ 196 (428)
T PF13347_consen 117 YTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFF 196 (428)
T ss_pred hhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999997 578999999999999999977777666665422 5999999999888888888777
Q ss_pred hhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhh
Q 008070 347 KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTES 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~ 426 (579)
..+|++++.++.. ++......++.+++||.++.+.+..++...+........+.|.++..|.+ ...
T Consensus 197 ~~ke~~~~~~~~~-------------~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~ 262 (428)
T PF13347_consen 197 FVKERSVEVTEQE-------------KKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLI 262 (428)
T ss_pred eeeeccccccccc-------------cccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhh
Confidence 7776211111110 01111234777899999999999999998888888888999999988866 566
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhh
Q 008070 427 GLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG 506 (579)
Q Consensus 427 g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (579)
+.+.....++.+++.++.++++||+|+|+....+. .+..++.+ .+......+.+...+.....+.+..... ..
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~i~~~l~gi~~~~~~-~~ 335 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGL--LLAALGFL----LLFFLGPGSPWLVLILFILAGIGYGAFF-VI 335 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhH--HHHHHHHH----HHHHHHhhhHHHHHHHHHHhHhhhcccc-cc
Confidence 77777888999999999999999999998765432 11111111 1111111233333333333333333333 33
Q ss_pred hhhhccc-c-------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 507 LYSNHQD-I-------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 507 ~~~~~~~-~-------~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
......+ + ..+..|..+|+.++...++..+++.+.|.+.+..||.
T Consensus 336 ~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 336 PWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred cccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 3332222 2 2356799999999999999999999999998876553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=170.08 Aligned_cols=363 Identities=17% Similarity=0.147 Sum_probs=261.4
Q ss_pred cccccchhHHHHHHHHHHHHHH-----------------------------------hhhhhhhhhhhhhcCCcHHHHHH
Q 008070 198 WWEQFPKRWVVVLLCFSAFLLC-----------------------------------NMDRIVGGIWADKFGGKPVLGFG 242 (579)
Q Consensus 198 ~~~~~~~~~~v~~l~~~~~~~~-----------------------------------~l~~~~~G~l~Dr~Grr~~l~~~ 242 (579)
..+.+++||++++++++..+.. ....+++-|+.|++|-|..++++
T Consensus 36 ~~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llg 115 (480)
T KOG2563|consen 36 GHRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLG 115 (480)
T ss_pred ccccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHH
Confidence 4567889999988777644433 22226778899999999999999
Q ss_pred HHHHHHHHHHHHhhhcc----CHH--HHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 243 VIWWSVATVLTPVAARI----GLP--FLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAV 316 (579)
Q Consensus 243 ~~~~~~~~ll~~~a~~~----~~~--~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i 316 (579)
..+.+++..+-..+... .++ ....+..+.+.+.-..+.....+..-||++++|..+..+-.++..+|..+|.++
T Consensus 116 t~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 116 TVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 99999999986655321 234 667888899998888888878889999999999999999999999999999999
Q ss_pred HHHhhccc------Ccch--HHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhch
Q 008070 317 SPILIQKF------GWPS--VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKA 388 (579)
Q Consensus 317 ~~~l~~~~------gwr~--~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (579)
...+..+- .|.. .|+..++++.+.+++..+..+++|+.++........ +.......+..++++
T Consensus 196 ppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n~ 266 (480)
T KOG2563|consen 196 PPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKNR 266 (480)
T ss_pred cceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcCc
Confidence 88887643 3544 355455555555566666666655554443322221 111335678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+..+++.+.+....++...+.+-.-+.. -|++...+|+......+++++++++.|.+.||.+..+.... .....
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~----v~~~~ 341 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTL----VLYLF 341 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH----HHHHH
Confidence 99999888888877777777766655555 47777889999999999999999999999999977654322 11111
Q ss_pred HHHH-HHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 469 GFLG-PAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 469 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
.+.. +.+..........+++...+..++.+..+..+.......+...|..-++..|+.++.+++-+.+-..+.+...+.
T Consensus 342 ~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~ 421 (480)
T KOG2563|consen 342 ALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAED 421 (480)
T ss_pred HHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhc
Confidence 1111 111122222334455566666777777777776666778888998889999999999999999999999999888
Q ss_pred CC----hHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 548 GS----WDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 548 ~g----~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.+ +...-+.....+++++++..+++++
T Consensus 422 ~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 422 LGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred cCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 66 5555666666666666666665543
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-24 Score=228.68 Aligned_cols=367 Identities=16% Similarity=0.147 Sum_probs=236.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc-CHHHHHHHHHHHHhhhhchhhHH
Q 008070 204 KRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI-GLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 204 ~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~-~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
..+...++.+..+++..++.+++|.++||+|||+.++++.++..++.++.++++.. +++.++++|++.|++.|...+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45677888899999999999999999999999999999999999999999999743 57889999999999999999999
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhc
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF---GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELR 359 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~---gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~ 359 (579)
..++.|..|+++|++..++.+.+..+|.+++..++..+.... +||+.+++.+++.++..+.. .+.||+|+--..+.
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~wL~~~~ 202 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRWLLSKG 202 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccceecccc
Confidence 999999999999999999999999999999988876654433 49999998888876655444 56677765211111
Q ss_pred HH-HHhhhh--------------cCCc--ccccccchhHHHHhhchH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 008070 360 AE-EKRHIL--------------GGSI--SKEAVSVIPWKLILSKAP----VWALIISHFCH-NWGTFILLTWMPTYYNQ 417 (579)
Q Consensus 360 ~~-~~~~~~--------------~~~~--~~~~~~~~~~~~l~~~~~----~~~~~l~~~~~-~~~~~~~~~~~p~~l~~ 417 (579)
+. +.++.. +... ++.......++++++++. +...+....+. ..+.+....+.+.++.+
T Consensus 203 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~ 282 (451)
T PF00083_consen 203 RDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN 282 (451)
T ss_pred cccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 00 000000 0000 000001123555665533 22222222222 22333444555655555
Q ss_pred hhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHH
Q 008070 418 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR---TPAMAVLCMA 494 (579)
Q Consensus 418 ~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 494 (579)
.+.+.. -.......+...++.++..++.||+|||+....+. ...+++.+..+.......... ..........
T Consensus 283 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 357 (451)
T PF00083_consen 283 -AGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL--LLMAICSLILGIIFFLGVSSSSWWSILSIVFLAL 357 (451)
T ss_pred -cccccc--ccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccceeeee
Confidence 566665 22233444566667777789999999998766543 111111111110011111111 1112222221
Q ss_pred HHhhhh-hhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 495 CSQGSD-AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 495 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
...+.. +..+.......|.+|.+.|+++.|+...++.+++++++.+...+.+..+....+.+.+++++++.++..++.+
T Consensus 358 ~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 358 FFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 212222 2222222334566777999999999999999999999999999888877555666666666666666656555
Q ss_pred Ccc
Q 008070 574 GER 576 (579)
Q Consensus 574 ~~~ 576 (579)
+.|
T Consensus 438 ET~ 440 (451)
T PF00083_consen 438 ETK 440 (451)
T ss_pred eCC
Confidence 444
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-19 Score=163.28 Aligned_cols=329 Identities=16% Similarity=0.149 Sum_probs=212.5
Q ss_pred hhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHH---hhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHH
Q 008070 224 IVGGIWADK-FGGKPVLGFGVIWWSVATVLTP---VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSL 299 (579)
Q Consensus 224 ~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~---~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~ 299 (579)
.++|++.|| +|-|+.-++-+....++.++++ ..+ .+|.++.+|++.|+|.-....+-+.++.-||..||.+.++
T Consensus 97 ffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~--aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vf 174 (459)
T KOG4686|consen 97 FFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISH--AFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVF 174 (459)
T ss_pred eecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHH--HHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchh
Confidence 789999997 6888776666666777777655 445 6899999999999998888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCc------chHHHH---hhHHHHHHHH---HHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 300 AFVYSGMYLGSVTGLAVSPILIQKFGW------PSVFYS---FGSLGSIWFA---LWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 300 g~~~~~~~lG~~lgp~i~~~l~~~~gw------r~~f~i---~~~~~li~~~---l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
|+......+|..+--.+.+++.+..+- +....+ .+......-+ +..-...++. + +.-.++
T Consensus 175 GlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rA---e--rilh~e--- 246 (459)
T KOG4686|consen 175 GLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRA---E--RILHLE--- 246 (459)
T ss_pred hHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---H--HHHhhh---
Confidence 999999999998887777777764321 111111 1111111111 1111111000 0 000000
Q ss_pred cCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l 447 (579)
++.. .+..+....+ -..|.+|.+.++.++++.+.+-+...-|.++++.+|+++..++.+.+.....+.+.+.+.|.+
T Consensus 247 ~g~~-Ge~pkLtdv~--~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i 323 (459)
T KOG4686|consen 247 EGFL-GEEPKLTDVN--TFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAI 323 (459)
T ss_pred cCcc-cCCccccccc--ccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHh
Confidence 0000 0000001111 126889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHH
Q 008070 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN 527 (579)
Q Consensus 448 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 527 (579)
+||+|++-+.+.. +....+.+=..+.+.. .+++.....+.+....... ..+......+|.++.|+++|.++
T Consensus 324 ~Dk~G~n~~wv~~------a~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsysllAc--slWP~va~~vpE~qLGTaygf~q 394 (459)
T KOG4686|consen 324 SDKYGFNLWWVAS------ACILTLLGHSGLFFTF-LSPYTSMTFLGLSYSLLAC--SLWPCVASLVPEEQLGTAYGFIQ 394 (459)
T ss_pred HhhhcceehhHHH------HHHHHHHHhhhHHhhh-ccHHHHHHHHhhhHHHHHH--HHhhhhhhhCCHHHhcchHHHHH
Confidence 9999998543321 1111111111122222 2333333333333222222 11222333357788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-hHH---HHHHHHHHHHHHHHHHHHhhcC
Q 008070 528 TAGVLAGVFGTAATGYILQRGS-WDD---VFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 528 ~~~~lg~~ig~~l~g~l~~~~g-~~~---~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.+.++|-++.|.++|.+.|.-| |.+ .|+..+.+.++...+++.+.++
T Consensus 395 sIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 395 SIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 9999999999999999999843 543 3444555555555555555443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=177.86 Aligned_cols=331 Identities=14% Similarity=0.098 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhh----hcCC-cHHHHHHHHHHHHHHHHHHhhhcc--C--HHHHHHHHHHHHhhh
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWAD----KFGG-KPVLGFGVIWWSVATVLTPVAARI--G--LPFLLIMRAFMGIGE 275 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~D----r~Gr-r~~l~~~~~~~~~~~ll~~~a~~~--~--~~~ll~~r~l~Gig~ 275 (579)
...++.+..+.-+...+..|+.|.++| |+|| |+.++++.+..+++.+++...+.. + +..+++..++.+++.
T Consensus 41 ~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~ 120 (473)
T PRK10429 41 VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTY 120 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 456777788888888899999999999 5698 667778888888887666543311 1 334566677778888
Q ss_pred hchhhHHHHHHhccc-CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 276 GVAMPAMNNMLSKWI-PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 276 g~~~~~~~~~i~~~~-~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-------~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
....++..+++.|+. +++||.+..++...+.++|.++.+.+...+.. ..+|++...+.+++.++..++.++.
T Consensus 121 t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 200 (473)
T PRK10429 121 TIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRN 200 (473)
T ss_pred HHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 888999999999998 58999999999788788876666655544322 1356777677776666655555554
Q ss_pred hcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhh
Q 008070 348 AYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESG 427 (579)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g 427 (579)
.+|++.+.....++ +++......++.+++|+.++.+++..++..........+.+.|.+...+ +....+
T Consensus 201 ~~e~~~~~~~~~~~----------~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~ 269 (473)
T PRK10429 201 VHEVYSSDNQVSAE----------GSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFP 269 (473)
T ss_pred ceecCCcccccccc----------ccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHH
Confidence 55543211100000 0001112345667789999988888888887777777777766665434 556667
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSG 506 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 506 (579)
.+.....++.+++.++.+++.||+|+|+.+..+. .+..++.+. +...........+..++. .+.+.+........
T Consensus 270 ~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~ 345 (473)
T PRK10429 270 YYLSYAGAANLVTLILFPRLVKSLSRRILWAGAS--IFPVLSCGV--LLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ 345 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH--HHHHHHHHH--HHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888999999999999999997654332 111111111 111101112222222222 22222222222222
Q ss_pred hhhhccc-------cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 507 LYSNHQD-------IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 507 ~~~~~~~-------~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
.....+. ...+..|..+|+..++..++..+++.+.|++.+..||
T Consensus 346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2222222 2235568899999999999999999999999987666
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=168.15 Aligned_cols=353 Identities=12% Similarity=0.095 Sum_probs=227.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHH--HHH-HHHHhhh--ccCH-HHHHHHHHHHHhhhhch
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWS--VAT-VLTPVAA--RIGL-PFLLIMRAFMGIGEGVA 278 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~--~~~-ll~~~a~--~~~~-~~ll~~r~l~Gig~g~~ 278 (579)
.-.++.+.+...+...+.+|+.|.++||+|.||-++....+.. .+. ....+.+ ..|+ ...+++.+..|+.....
T Consensus 42 ~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~ 121 (412)
T PF01306_consen 42 GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAG 121 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456778888888888999999999999997765544333222 222 2212221 0132 23344445556666666
Q ss_pred hhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 279 MPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 279 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.+...+++.++. ++.+.-.|-..+..++|.+++..++|.+.+ .+-...||+..+.+++..++.+...++.+++....
T Consensus 122 ~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~ 198 (412)
T PF01306_consen 122 VPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA 198 (412)
T ss_dssp HHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS
T ss_pred chHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh
Confidence 777777777665 455667888889999999999999999987 45677888776666665555555554433322111
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChhhhhHHhHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL---KFNLTESGLFCVLPWL 435 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~---g~s~~~~g~~~~~~~~ 435 (579)
+... .++++.......+++|+|++|.+.+........+..+....+.|....+ +.+....|++.+...+
T Consensus 199 ~~~~--------~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~ 270 (412)
T PF01306_consen 199 DALG--------AKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVF 270 (412)
T ss_dssp TTSS--------S------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred cccc--------cCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHH
Confidence 1000 0011112234567899999999998888877778888777888887633 2344567888888888
Q ss_pred HHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhh-hhhhhhhcccc
Q 008070 436 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS-QSGLYSNHQDI 514 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 514 (579)
..++...+.+++.+|+|.|+.++ ++.+++.+-+......+.++.+.+.=.+-+...... ....-...+..
T Consensus 271 ~E~~~m~~~p~li~rig~k~~Ll---------lag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f 341 (412)
T PF01306_consen 271 LEALMMFFSPWLINRIGAKNLLL---------LAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF 341 (412)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH---------HHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcChHhHHH---------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999996433 222223333333344445555544444444443333 33344455567
Q ss_pred CCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 008070 515 GPRYAGVLLGLS-NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV 577 (579)
Q Consensus 515 ~~~~~g~~~g~~-~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 577 (579)
+++..++...+. +...+++.++.+.++|.++|+.|++..|++.+++.++..++..+..+++|+
T Consensus 342 d~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 342 DKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp -GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 778888988885 677899999999999999999999999999998888777777666655543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-17 Score=172.21 Aligned_cols=339 Identities=15% Similarity=0.098 Sum_probs=225.7
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc----cCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR----IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSL 299 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~----~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~ 299 (579)
++.|++.||+|+|++++++.++++++.++++++.+ .+++.+++.|++.|+|.+...+.....+.+|+| ++||++.
T Consensus 79 lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~ 157 (591)
T PTZ00207 79 LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVV 157 (591)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHH
Confidence 68899999999999999999999999999999711 178999999999999999999999999999996 8899999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCCh---h--hcHHHHh--h------
Q 008070 300 AFVYSGMYLGSVT-GLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP---E--LRAEEKR--H------ 365 (579)
Q Consensus 300 g~~~~~~~lG~~l-gp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~---~--~~~~~~~--~------ 365 (579)
|+...+.++|.++ +++..+++. .+|++.|++.+++.++..++.+.+.+++|.... + .+++++. .
T Consensus 158 Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y 235 (591)
T PTZ00207 158 AIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVY 235 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhh
Confidence 9999999999976 555555544 468899999998888887777776665542211 0 0011110 0
Q ss_pred ---------h--------------------------------------h------c-----------C-Cc-c-------
Q 008070 366 ---------I--------------------------------------L------G-----------G-SI-S------- 372 (579)
Q Consensus 366 ---------~--------------------------------------~------~-----------~-~~-~------- 372 (579)
. . . . .. +
T Consensus 236 ~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~ 315 (591)
T PTZ00207 236 LKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKE 315 (591)
T ss_pred hhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccc
Confidence 0 0 0 0 00 0
Q ss_pred ----------------------cccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh--hhH
Q 008070 373 ----------------------KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE--SGL 428 (579)
Q Consensus 373 ----------------------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~--~g~ 428 (579)
..++...++.+.+++..+|++++..++.......+...+..+.+..-|.+... ...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~ 395 (591)
T PTZ00207 316 HVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTL 395 (591)
T ss_pred cccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceee
Confidence 00111125677788899999999999988888877778887777732663322 233
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhccC----cchHHHHHHHHHHHHH-HHHHHHHHhhccchhHHHHHHHHHHhhhhhhh
Q 008070 429 FCVLPWLTMAVFANMGGWIADTLVSKG----LSITAVRKIMQSIGFL-GPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS 503 (579)
Q Consensus 429 ~~~~~~~~~~ig~~~~g~l~dr~g~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (579)
+.++.++++.+|++..|++.....+|+ +.+. +.+.+..+ ..+..++..... ...+.+..++.+.+. +..
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt----~~l~~~~~~~~~~lll~~~~p-~~~L~~~~~lvg~~~-G~~ 469 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT----IALFIPSVCIITMLTLFLTLP-KAALPLPYFIAAFAN-GFM 469 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh----HHHHHHHHHHHHHHHHHHHCC-ccHhHHHHHHHHHHh-hHh
Confidence 678889999999999998873333332 3222 11122222 111222222222 112222222333333 333
Q ss_pred hhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHhcC----------C---hHHHHHHHHHHHHHHHHHH
Q 008070 504 QSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFG-TAATGYILQRG----------S---WDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 504 ~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig-~~l~g~l~~~~----------g---~~~~~~~~~~~~~l~~~~~ 568 (579)
.+.... ..+.+. ++.|+-+-+.....-+|..+- -.++|.++|+. | ++..|++.+++++++.++.
T Consensus 470 ~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 470 AATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITS 548 (591)
T ss_pred HHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence 333333 344455 888888888888777877776 67889998751 1 6788999998888888876
Q ss_pred HHhh
Q 008070 569 NLFA 572 (579)
Q Consensus 569 ~~~~ 572 (579)
..+.
T Consensus 549 ~~l~ 552 (591)
T PTZ00207 549 TYVH 552 (591)
T ss_pred hhee
Confidence 6553
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-17 Score=161.36 Aligned_cols=350 Identities=17% Similarity=0.067 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHH-HHHHHHHHHHHHHHHHhhhc-cCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPV-LGFGVIWWSVATVLTPVAAR-IGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~ll~~~a~~-~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.-..++..+...+-.|+.|.++|+.|+||. +-....+..++..++.+.++ ..++..++...+..++........++++
T Consensus 61 gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L 140 (438)
T COG2270 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSML 140 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHh
Confidence 444555566666777999999999997655 55556666667777777774 2356667788888999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHh---h---------------cccCcchHHHHhhHHHHHHHHHHHhhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL---I---------------QKFGWPSVFYSFGSLGSIWFALWLKKA 348 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l---~---------------~~~gwr~~f~i~~~~~li~~~l~~~~~ 348 (579)
.+..++++-++..++-.....+|.++.-++.-.. . +...-|.++.+.++..++..+..+...
T Consensus 141 ~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v 220 (438)
T COG2270 141 PRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNV 220 (438)
T ss_pred hhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcc
Confidence 9999998888888887777777776655543211 1 122357788888888888877777777
Q ss_pred cCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhH
Q 008070 349 YSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGL 428 (579)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~ 428 (579)
++.++........-... -++-..+++++.+++.+..++++.+++.-+..+...+...|....+|++..+..+
T Consensus 221 ~~~~~~~~~~~~~l~~g--------~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll 292 (438)
T COG2270 221 HDAEKISSPPPTALRNG--------FKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLL 292 (438)
T ss_pred cccccccccchHHHHHH--------HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 76654321110000000 0001235778888899999999999999999999999999999889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhh
Q 008070 429 FCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLY 508 (579)
Q Consensus 429 ~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (579)
+.....+.+++|.++.|++.+|+|.|+++..+. .+.......... ........+..+.++.+.+......-.
T Consensus 293 ~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~l-------vi~~~~~~~~~~-~~~~~~f~i~gll~g~s~G~~qA~SRS 364 (438)
T COG2270 293 IGIALSVVAALGAIIAGFLDERFGSKPVLMIGL-------VILSIAALYLIF-LEGELDFWILGLLVGTSLGGAQASSRS 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHH-------HHHHHHHHHHHH-ccccHHHHHHHHHHHHhcchHHHHHHH
Confidence 999999999999999999999999997765432 111111111111 122333334444555555555555666
Q ss_pred hhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 509 SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 509 ~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
...+.+||++.++.+|+++..+..+..+||.+.+.+.+. .+.+..+....++.+++.++++..+.+
T Consensus 365 y~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 365 YLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 677778999999999999999999999999999999987 556777788888888887777666544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-17 Score=171.63 Aligned_cols=323 Identities=13% Similarity=0.087 Sum_probs=193.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhc----CCcHH-HHHHHHHHHHHHHHHHhhh-----ccCHHHHHHHHHHHHhh
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKF----GGKPV-LGFGVIWWSVATVLTPVAA-----RIGLPFLLIMRAFMGIG 274 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~----Grr~~-l~~~~~~~~~~~ll~~~a~-----~~~~~~ll~~r~l~Gig 274 (579)
...++.+.....+...+..++.|+++||. |||+. ++++.+...+..++....+ ......+++..++.+++
T Consensus 43 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (448)
T PRK09848 43 AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLC 122 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHH
Confidence 44667778888888888999999999996 66664 4566555554444432111 11223345556777888
Q ss_pred hhchhhHHHHHHhcccC-cCchhHHHHHHHHHHH-----HHHHHHHHHHHHhhccc--CcchHHHHhhHHHHHHHHHHHh
Q 008070 275 EGVAMPAMNNMLSKWIP-VSERSRSLAFVYSGMY-----LGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFALWLK 346 (579)
Q Consensus 275 ~g~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~-----lG~~lgp~i~~~l~~~~--gwr~~f~i~~~~~li~~~l~~~ 346 (579)
.+...++..++..+..+ +++|.+..++...+.+ ++..++|++++...... +|.....+.++++++..++...
T Consensus 123 ~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~ 202 (448)
T PRK09848 123 YSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFK 202 (448)
T ss_pred HHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888777764 4678887776655433 45555666655432111 1211112223333333333333
Q ss_pred hhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhh
Q 008070 347 KAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTES 426 (579)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~ 426 (579)
..+|+++++.+. ......++.+++||.++...+..++...+......+.|.|+++.+|.++...
T Consensus 203 ~~~e~~~~~~~~----------------~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 266 (448)
T PRK09848 203 STRENVVRIVAQ----------------PSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFT 266 (448)
T ss_pred CcEeccCCCccC----------------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHH
Confidence 333332211100 0112346778999999999888888888888888888888888888777666
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHhhhhhhhhh
Q 008070 427 GLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL-CMACSQGSDAFSQS 505 (579)
Q Consensus 427 g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 505 (579)
++......++.+++.++.+++.||+++|+.+..+. .+..++. ...........+...+ ..+.+.+.......
T Consensus 267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~--~~~~i~~-----~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGA--LLGTCGY-----LLFFWVSVWSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHH-----HHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555546677888999999999999987655432 1111111 1111111122222222 22233333222222
Q ss_pred hhhhhccccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 506 GLYSNHQDIG-------PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 506 ~~~~~~~~~~-------~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
......+..+ .+..|..+|+.++...+|..+++.+.|.+.+..||
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2222222222 24569999999999999999999999999887665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-16 Score=161.82 Aligned_cols=326 Identities=15% Similarity=0.164 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh----cCC-cHHHHHHHHHHHHHHHHHHhhhc----cCHHHHHHHHHHHHhhhhc
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADK----FGG-KPVLGFGVIWWSVATVLTPVAAR----IGLPFLLIMRAFMGIGEGV 277 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr----~Gr-r~~l~~~~~~~~~~~ll~~~a~~----~~~~~ll~~r~l~Gig~g~ 277 (579)
.++.+..+.-+...+..|+.|.++|| +|| |+.++++.+..++...++..+++ .++...++..++.+++...
T Consensus 49 ~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~ 128 (467)
T COG2211 49 LAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTL 128 (467)
T ss_pred HHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHh
Confidence 34455555556667777999999996 676 56688888999999998888873 2456678888999999999
Q ss_pred hhhHHHHHHhcccC-cCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCcchHHHHhhHHHHHHHHHHHhhhc
Q 008070 278 AMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWPSVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 278 ~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-------~~gwr~~f~i~~~~~li~~~l~~~~~~ 349 (579)
...+..++.+++.+ ++||.+..++...+..+|.++...+.+.+.. ..||+...++.++++.+..+.+++..+
T Consensus 129 vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ 208 (467)
T COG2211 129 VNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVK 208 (467)
T ss_pred eeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999985 7899999999999999998776666655543 347888889999998888888888887
Q ss_pred CCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHH
Q 008070 350 SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~ 429 (579)
|++.+....+...+ ......+..+++|+.+...++..++...+..........|.+..+|.+.....+.
T Consensus 209 ER~~~~~~~~~~~~-----------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~ 277 (467)
T COG2211 209 ERVVETQPTKTGVK-----------LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLL 277 (467)
T ss_pred cccCccccCccccc-----------ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHH
Confidence 77653332221011 0111235568899999999998888888888888888999998888888888888
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008070 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509 (579)
Q Consensus 430 ~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (579)
......+.+++.++..++.+|+|+|+....+. .+...+.....+...+...+.++..++.........+...+
T Consensus 278 ~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~-------~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 278 LLASGAGLLIGLILWPRLVKKFGKKKLFLIGL-------LLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH-------HHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHH
Confidence 88888888888999999999999998765432 11111111111222334444444434433333444444444
Q ss_pred hcccc--------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 510 NHQDI--------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 510 ~~~~~--------~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
...+. ..+..|..+|.+.++..+|.+++..+.|++.+..||
T Consensus 351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33332 335679999999999999999999999999998665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=176.69 Aligned_cols=328 Identities=10% Similarity=-0.044 Sum_probs=203.3
Q ss_pred hhhhhhhhhhcC-----CcHHHHHHHHHHH-HHHHHHHhhhccCH-HHHHHHHHHHHhhhhchhhHHHHHHhcccCcCch
Q 008070 223 RIVGGIWADKFG-----GKPVLGFGVIWWS-VATVLTPVAARIGL-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER 295 (579)
Q Consensus 223 ~~~~G~l~Dr~G-----rr~~l~~~~~~~~-~~~ll~~~a~~~~~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r 295 (579)
.+++|+++||++ ||+.++++.++.. +.....+..+ +. ....+..++.+++.+...++..+++.|..+ +++
T Consensus 77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~ 153 (468)
T TIGR00788 77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKV--SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP 153 (468)
T ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC
Confidence 367999999997 7777888877763 4434444434 43 344458899999999999999999999998 555
Q ss_pred hHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCC-CChhhcHHHH---hhhhc
Q 008070 296 SRSL---AFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK-EDPELRAEEK---RHILG 368 (579)
Q Consensus 296 ~~~~---g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~-~~~~~~~~~~---~~~~~ 368 (579)
.... ++.....++|.++|+.++|.+.+.++|+..|++.+++.++..+.. .+.+|++. ..++..+.+. .....
T Consensus 154 ~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~-~~~~E~~~~~~~~~~~~~~~~~~~~~~ 232 (468)
T TIGR00788 154 SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVS-NLSKERRAFVRPRIGTYLEMNMALLTL 232 (468)
T ss_pred CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-Hhcccccccccccccccchhhhhhhhh
Confidence 4433 333344558999999999999999999999999888877764433 34444321 1111000000 00000
Q ss_pred CCcccccccchhHHHHhhchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHH
Q 008070 369 GSISKEAVSVIPWKLILSKAPVWALIISHFC-HNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWI 447 (579)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l 447 (579)
.............+..+++|.++...+..++ +.........+. .+..+.+|+++.+.|++....+++.+++..+.+++
T Consensus 233 ~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~ 311 (468)
T TIGR00788 233 GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF 311 (468)
T ss_pred hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 0000000111234456778888776665555 222211111110 12234589999999999999999999999999999
Q ss_pred hhhhhccCcchHHHHHHHHHHHHHHHHHHHHH----h-------hccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCC
Q 008070 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ----L-------SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP 516 (579)
Q Consensus 448 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (579)
.+|++.|+.+..+ .++.++.... . .............+...+......+......+..|+
T Consensus 312 ~~~~~~r~~l~~~---------~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~ 382 (468)
T TIGR00788 312 LKTFPYRLLFGVT---------TLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS 382 (468)
T ss_pred HhhCCHHHHHHHH---------HHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC
Confidence 8888877543322 1111111100 0 001111122222223333333344445556667888
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHH
Q 008070 517 RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-----WDDVFKVAVVLYIIG 564 (579)
Q Consensus 517 ~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-----~~~~~~~~~~~~~l~ 564 (579)
+.+|+.+|+.+.+.++|..+++.++|.+.+..| |+..+.+..+..+..
T Consensus 383 ~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~ 435 (468)
T TIGR00788 383 GCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAP 435 (468)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887 666665554444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-16 Score=162.88 Aligned_cols=320 Identities=12% Similarity=0.063 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhh----cCCc-HHHHHHHHHHHHHHHHHHhhhccC----HHHHHHHHHHHHhhhhc
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADK----FGGK-PVLGFGVIWWSVATVLTPVAARIG----LPFLLIMRAFMGIGEGV 277 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr----~Grr-~~l~~~~~~~~~~~ll~~~a~~~~----~~~ll~~r~l~Gig~g~ 277 (579)
.++.+..+.-+...+..|+.|.++|| +||| +.++++.+.++++.+++...+..+ +..+++..++..++..+
T Consensus 46 ~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~ 125 (460)
T PRK11462 46 FVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTV 125 (460)
T ss_pred HHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 44566666667777778999999996 6875 556678788888877766555222 34566777778889998
Q ss_pred hhhHHHHHHhcccC-cCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CcchHHHHhhHHHHHHHHHHHhhhc
Q 008070 278 AMPAMNNMLSKWIP-VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-------GWPSVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 278 ~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-------gwr~~f~i~~~~~li~~~l~~~~~~ 349 (579)
...+..++.+++.+ ++||++..++...+..+|..+++.+...+.... +|+....+.+++.+++.++.+...+
T Consensus 126 ~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 126 VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 99999999999986 789999999999999999888887766555433 5777777777776666655555444
Q ss_pred CCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHH
Q 008070 350 SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~ 429 (579)
|+++++.++. .....++.+++|+.++.++...++..............|.+..+|. +...+.+
T Consensus 206 E~~~~~~~~~----------------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~ 268 (460)
T PRK11462 206 ERVEAPPTTT----------------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAF 268 (460)
T ss_pred eccCCCccCC----------------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHH
Confidence 4432211100 0112456678899888777776666666665555556666655553 3444566
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008070 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509 (579)
Q Consensus 430 ~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (579)
.....++.+++.+++++++||+++|+...... .......+.+............+..++.+.+. .........
T Consensus 269 l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~l~~~ 341 (460)
T PRK11462 269 LTTYCVGNLIGSALAKPLTDWKCKVTIFWWTN------ALLAVISLAMFFVPMQASITMFVFIFVIGVLH-QLVTPIQWV 341 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH------HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 66777888899999999999999886533211 11111111111111111112222222222222 222222222
Q ss_pred hcccc--------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 510 NHQDI--------GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 510 ~~~~~--------~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
...+. ..+..|..++...+...+|.++++.+.|.+.+..||
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 134457777888899999999999999999987665
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-15 Score=150.76 Aligned_cols=352 Identities=15% Similarity=0.154 Sum_probs=240.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcC-----CcHH-HHHHHHHHHHHHHHHHhhh----c-------cCH-H--HH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFG-----GKPV-LGFGVIWWSVATVLTPVAA----R-------IGL-P--FL 264 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~G-----rr~~-l~~~~~~~~~~~ll~~~a~----~-------~~~-~--~l 264 (579)
.|++..+..+-++... .++.+|..+|+.+ ||.. +..|.+++..+..+.+++. . ..+ + ..
T Consensus 14 A~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a 92 (403)
T PF03209_consen 14 AWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALA 92 (403)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHH
Confidence 5677777777777765 5799999999998 7755 5566666666555544331 1 112 2 23
Q ss_pred HHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHH---H
Q 008070 265 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIW---F 341 (579)
Q Consensus 265 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~---~ 341 (579)
.+.-.+.|+|.+...++..++++|..|+|+|+++.++...+.-+|.+++.++.+.+.+.++-.-..-+.....++. .
T Consensus 93 ~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~ 172 (403)
T PF03209_consen 93 ALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLN 172 (403)
T ss_pred HHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999988776433333322222222 2
Q ss_pred HHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 008070 342 ALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKF 421 (579)
Q Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~ 421 (579)
++..+-. |++..... ....+++......++++..+|....+.+..++...+++.=...+-+|-.+++|+
T Consensus 173 ~ia~wg~-E~r~~~~~----------~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgm 241 (403)
T PF03209_consen 173 LIALWGQ-EPRRSRRA----------AAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGM 241 (403)
T ss_pred HHHHHhc-ccCCcccc----------cCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCC
Confidence 2222222 11111111 001111222234577788899999888888888888888888899999999999
Q ss_pred ChhhhhHHhHHHHHHHHHHHHHHHHHhh-hhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhh
Q 008070 422 NLTESGLFCVLPWLTMAVFANMGGWIAD-TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSD 500 (579)
Q Consensus 422 s~~~~g~~~~~~~~~~~ig~~~~g~l~d-r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (579)
+..+...+......+..+|..+.|++.. |.++++....+. ..+..............+.+.+....+.++.+.+
T Consensus 242 sv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~-----~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 242 SVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGC-----LLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH-----HHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 9999999999999999999999998776 455554333221 1111111111111222233344444455555555
Q ss_pred hhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHHHHHHHHH
Q 008070 501 AFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR----------GSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~----------~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
.+........+....++..|..+|.....+.++..++..++|.+.|. .+|..+|.+-+++.++++++...
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666667788999999999999999999999999999884 24777777777777777666655
Q ss_pred hhc
Q 008070 571 FAT 573 (579)
Q Consensus 571 ~~~ 573 (579)
+.+
T Consensus 397 l~~ 399 (403)
T PF03209_consen 397 LDR 399 (403)
T ss_pred hhh
Confidence 543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-15 Score=159.80 Aligned_cols=352 Identities=14% Similarity=0.127 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhc-CCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhc
Q 008070 210 LLCFSAFLLCNMDRIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 288 (579)
Q Consensus 210 ~l~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~ 288 (579)
.+........++..+++|+++||+ |||++++++.++..++.+++++... +...+++...+.++|.|...+...++++|
T Consensus 49 ~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~-~~~~~~l~l~li~iG~G~~~~~~~alv~e 127 (493)
T PRK15462 49 ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI-HPSFLYLSLAIIVCGYGLFKSNVSCLLGE 127 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHhcccccccHHHHHHH
Confidence 334444456667779999999999 9999999999999999887765431 22334444455556777777878899999
Q ss_pred ccCcC--chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhh---cCCCC-CChhhcHHH
Q 008070 289 WIPVS--ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA---YSSPK-EDPELRAEE 362 (579)
Q Consensus 289 ~~~~~--~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~---~~~~~-~~~~~~~~~ 362 (579)
++|++ +|..++++...+.++|..++|.+.+++.+.+||++.|.+.++..++..+..+... ++... +++..++++
T Consensus 128 lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~ 207 (493)
T PRK15462 128 LYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATN 207 (493)
T ss_pred HCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhh
Confidence 99875 6999999999999999999999999999999999999986654433333332221 11100 000000000
Q ss_pred Hhh---------------hhcCCccccccc------------------chhHHHHhhchHH---HHHHHHHHHHHHHHHH
Q 008070 363 KRH---------------ILGGSISKEAVS------------------VIPWKLILSKAPV---WALIISHFCHNWGTFI 406 (579)
Q Consensus 363 ~~~---------------~~~~~~~~~~~~------------------~~~~~~l~~~~~~---~~~~l~~~~~~~~~~~ 406 (579)
... ........+... ..+.... .++++ ..+.+...+++..+.-
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-er~r~~~~~~l~~~~~~Fw~~~~Q 286 (493)
T PRK15462 208 FLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQK-QRKELGLIVTLTFFSMLFWAFAQQ 286 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 000000000000 0000000 11122 2223333333333333
Q ss_pred HHHHHHHHHHHhh-----CCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhc--cCc---chHHHHHHHHHHHHHHHHHH
Q 008070 407 LLTWMPTYYNQVL-----KFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS--KGL---SITAVRKIMQSIGFLGPAFF 476 (579)
Q Consensus 407 ~~~~~p~~l~~~~-----g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~--~~~---~~~~~~~~~~~~~~~~~~~~ 476 (579)
..+-+..|..+.. |++ ....++.++..+..++..++.+++-.|..+ |.. ...+....+.+++++.+.+.
T Consensus 287 ~~~sl~lfa~~~vd~~~~g~~-ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~ 365 (493)
T PRK15462 287 GGSSISLYIDRFVNRDMFGYT-VPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLS 365 (493)
T ss_pred hhHHHHHHHHHhccchhccee-eCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555665532 222 235566777777777777777776566532 221 11222223333333333222
Q ss_pred HHHhh---ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHhc-----
Q 008070 477 LTQLS---HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAG-VLAGVFGTAATGYILQR----- 547 (579)
Q Consensus 477 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~lg~~ig~~l~g~l~~~----- 547 (579)
..... ..+.+|++...++...+-....+.......+..|++.+|..+|+..... .+|..++..+.+.....
T Consensus 366 ~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~ 445 (493)
T PRK15462 366 ARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAS 445 (493)
T ss_pred HhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcc
Confidence 21111 1233455555555555665666666666667677799999999986533 56666666665554311
Q ss_pred -------CChHHHHHHHHHHHHHH
Q 008070 548 -------GSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 548 -------~g~~~~~~~~~~~~~l~ 564 (579)
..|...|...+...+++
T Consensus 446 ~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 446 GAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred ccccchhhhHHHHHHHHHHHHHHH
Confidence 13566777777666555
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=145.53 Aligned_cols=359 Identities=16% Similarity=0.165 Sum_probs=220.3
Q ss_pred HHHHHhhhhhhhhhhhhhc-CCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcC
Q 008070 215 AFLLCNMDRIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS 293 (579)
Q Consensus 215 ~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~ 293 (579)
.....++..+++|+++||+ |+|+.+++|.+++.+|.++.+.....+...++++-++.++|.|..-+...++++|.+|++
T Consensus 70 y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 70 YGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 3344556669999999996 999999999999999999998883115778999999999999999999999999999854
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC---C--CCChhhcHHHHhhh
Q 008070 294 --ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS---P--KEDPELRAEEKRHI 366 (579)
Q Consensus 294 --~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~---~--~~~~~~~~~~~~~~ 366 (579)
+|-..++++.++.++|.+++|++.+++.+++||...|.+.++-..+.++..+...+.. + ++............
T Consensus 150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~ 229 (498)
T COG3104 150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPV 229 (498)
T ss_pred CcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhh
Confidence 4778899999999999999999999999999999999987766666555544433211 1 00000000000000
Q ss_pred h--------cCC----cccccc-----------cchhHHHHh------h-chHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 008070 367 L--------GGS----ISKEAV-----------SVIPWKLIL------S-KAPVW---ALIISHFCHNWGTFILLTWMPT 413 (579)
Q Consensus 367 ~--------~~~----~~~~~~-----------~~~~~~~l~------~-~~~~~---~~~l~~~~~~~~~~~~~~~~p~ 413 (579)
. ... ...+.. ...-+.+.+ . +++++ .+.+...+++..+.-..+.+..
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~ 309 (498)
T COG3104 230 LGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNL 309 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 0 000 000000 000000000 1 11222 2222222223222222333444
Q ss_pred HHHHhhCCC----hhhhhHHhHHHHHHHHHHHHHHHHHhhhhhcc--C---cchHHHHHHHHHHHHHHHHHHHHHhh---
Q 008070 414 YYNQVLKFN----LTESGLFCVLPWLTMAVFANMGGWIADTLVSK--G---LSITAVRKIMQSIGFLGPAFFLTQLS--- 481 (579)
Q Consensus 414 ~l~~~~g~s----~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~--- 481 (579)
|..+..+.+ ....++..+...+.-++..++..++..+.+++ . ....++...+...++++.........
T Consensus 310 ~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~ 389 (498)
T COG3104 310 YADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPS 389 (498)
T ss_pred HHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 443321111 13345667777777777887777777775443 2 22223333333333333333311222
Q ss_pred -ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH------HHhcCChHHHH
Q 008070 482 -HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY------ILQRGSWDDVF 554 (579)
Q Consensus 482 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~------l~~~~g~~~~~ 554 (579)
..+.++.+...++...+-....+..+....+..|+...+.++|+.......+..++..+.+. ..+.......|
T Consensus 390 ~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F 469 (498)
T COG3104 390 GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVF 469 (498)
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhH
Confidence 23445556666666677767777777777777888888999998888777777777777663 33445677778
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 008070 555 KVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 555 ~~~~~~~~l~~~~~~~~~~ 573 (579)
..++...++..++.+...+
T Consensus 470 ~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 470 GTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 8888777766665555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=148.25 Aligned_cols=317 Identities=17% Similarity=0.132 Sum_probs=216.8
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhh--hchhhHHHHHHhcccC
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGE--GVAMPAMNNMLSKWIP 291 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~--g~~~~~~~~~i~~~~~ 291 (579)
...+..++..+..|.++||+|||..+.+..+...+..+...+.. +|.++ +.|+.. +.......++++|...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---~~~~~----~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---YWFFL----LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---HHHhh----hcccccchhhhhhhhhhheeeccc
Confidence 44556667779999999999999999999999999888887775 44444 444332 3456778899999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCc
Q 008070 292 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSI 371 (579)
Q Consensus 292 ~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (579)
.++|...+|+.......+..++|.+++.+....|.-.+|.+..+..++..+..++..||+..++.... ........+..
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~~~~~~~~~~ 221 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-ATLRELTPGSL 221 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-ccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999888888888888765544331 00000000000
Q ss_pred --ccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH-HH
Q 008070 372 --SKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG-WI 447 (579)
Q Consensus 372 --~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g-~l 447 (579)
.............-.+|..+.+++..++.......-.. .++.|+...+++++.+.+.+.+.......++.++.. .+
T Consensus 222 ~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l 301 (463)
T KOG2816|consen 222 DSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLL 301 (463)
T ss_pred cchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001111111222345555555555544444432222 446778888999999999999999988888887766 77
Q ss_pred hhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHH
Q 008070 448 ADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSN 527 (579)
Q Consensus 448 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 527 (579)
...++.++... +++..-.+...........|..........+.....+.........+.++++|+++++..
T Consensus 302 ~~~l~~~~~i~---------lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is 372 (463)
T KOG2816|consen 302 SSILGEKRLIS---------LGLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIIS 372 (463)
T ss_pred HHHHhhhhHhh---------HHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHH
Confidence 77788775322 233322222222333333344333333333333344444444555578899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 008070 528 TAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 528 ~~~~lg~~ig~~l~g~l~~~ 547 (579)
.+..+...++|.+.+.++..
T Consensus 373 ~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 373 GIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999988754
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=140.66 Aligned_cols=355 Identities=16% Similarity=0.188 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCC-cHHHHHHHHHHHHHHHHH-Hhh--hccCHHHHHHHHHHHHhhhhchhhHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGG-KPVLGFGVIWWSVATVLT-PVA--ARIGLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~ll~-~~a--~~~~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
..+++.+...++..+..+..|++..|.+. |+.++.+.++..++.++. ++. ++..-+.++++|++.|+|.+ .....
T Consensus 72 ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~l 150 (488)
T KOG2325|consen 72 FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVL 150 (488)
T ss_pred hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHH
Confidence 44666677888888899999999999997 888999999999999987 333 32235789999999999987 45677
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--cC-----------cchHHHHhhHHHHHHHHHHHhhhc
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--FG-----------WPSVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~--~g-----------wr~~f~i~~~~~li~~~l~~~~~~ 349 (579)
-+++++-...++|.++++....+..+|.++||.++..+..- -| +-.+-|+.+++.++.+++..+..+
T Consensus 151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 88999988889999999999999999999999888776531 12 234557777777777777777777
Q ss_pred CCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHH
Q 008070 350 SSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF 429 (579)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~ 429 (579)
|...+..+.+.+..++ .....++.+.++ +.....+.+.+..+...+......+..+.+....++++..++-..
T Consensus 231 E~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~ 303 (488)
T KOG2325|consen 231 EVYRGIIDKKKRSVEE-EKSDIEKVKKPK------LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLY 303 (488)
T ss_pred ecccCccccccccchh-hccchhhhccCC------hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHh
Confidence 6655433221111100 000000001111 111223344444555555555556666666666678776665443
Q ss_pred hH----HHHHHHHHHHHHHHHHh-hhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc--------------------
Q 008070 430 CV----LPWLTMAVFANMGGWIA-DTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR-------------------- 484 (579)
Q Consensus 430 ~~----~~~~~~~ig~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 484 (579)
.. +.++..++-.+...+.. .++.+|+.+..+. ...+....+.+.......
T Consensus 304 ~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~-----l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~w 378 (488)
T KOG2325|consen 304 NGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGF-----LIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSW 378 (488)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehH-----HHHHHhhheeeeeccccccccccccccccCcCcccchh
Confidence 33 33332222222222222 2223343332211 111111111111110000
Q ss_pred -------hhHHHHHHHH--HHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 008070 485 -------TPAMAVLCMA--CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFK 555 (579)
Q Consensus 485 -------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~ 555 (579)
..+....... ++...-.........+.+.+.|++++++.|++.....++..++|.+...++...|+++.+.
T Consensus 379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~ 458 (488)
T KOG2325|consen 379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWI 458 (488)
T ss_pred hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHH
Confidence 0111111111 1111111122234446677899999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 008070 556 VAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 556 ~~~~~~~l~~~~~~~~~~~ 574 (579)
+.++..++...++.+..++
T Consensus 459 ~~~~~~l~~~~l~~~~~~r 477 (488)
T KOG2325|consen 459 ILLCLLLVVAALWIVFLKR 477 (488)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888777777666655443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-12 Score=134.46 Aligned_cols=231 Identities=14% Similarity=0.178 Sum_probs=178.4
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh----------------------------------------------
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA---------------------------------------------- 257 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~---------------------------------------------- 257 (579)
.+..+..-|..|-+++-+|.++++++.+++++-+
T Consensus 150 ~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 229 (735)
T KOG3626|consen 150 IFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKRE 229 (735)
T ss_pred HhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCccccc
Confidence 6777888888888999999999999999876521
Q ss_pred -ccC--H-HHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc---------
Q 008070 258 -RIG--L-PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--------- 324 (579)
Q Consensus 258 -~~~--~-~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~--------- 324 (579)
..+ + ..++++.++.|+|....++...+++-|...+++-+..+|++.....+|.++|-++++++...+
T Consensus 230 ~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 230 KESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 001 2 256788999999999999999999999999999999999999999999999999999986522
Q ss_pred ----------CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCc--ccc-------cccchhHHHHh
Q 008070 325 ----------GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSI--SKE-------AVSVIPWKLIL 385 (579)
Q Consensus 325 ----------gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~l~ 385 (579)
-|..-|++.+.+.++..+..++++++.|+..++....+.+....+.. ... +......+.++
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll 389 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLL 389 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHh
Confidence 16667888888888888888877766665433211111111111100 000 11234567788
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH-HHHHHHHHHHHHhhhhhcc
Q 008070 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSK 454 (579)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~ig~~~~g~l~dr~g~~ 454 (579)
+||.+...++...+....+.++.+|+|-|+++++|.++..+..+.....+ +..+|.+++|++.+|+.-+
T Consensus 390 ~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~ 459 (735)
T KOG3626|consen 390 SNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLS 459 (735)
T ss_pred cCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeeccc
Confidence 99999999999999999999999999999999999999999998876665 5667888999999988544
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-13 Score=116.95 Aligned_cols=132 Identities=26% Similarity=0.420 Sum_probs=118.7
Q ss_pred HHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCch
Q 008070 216 FLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER 295 (579)
Q Consensus 216 ~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r 295 (579)
.++..+..++.|++.||+|||+.+..+..+..++.++..+.+ +++.+++.+++.|++.+...+...+++.|.+|+++|
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 455667779999999999999999999999999998888887 888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhc
Q 008070 296 SRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 296 ~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~ 349 (579)
++.+++......+|..+++.+++.+.+..+|++.|++.+++.++..+..++..|
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999899999999988887777666665544
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=134.51 Aligned_cols=346 Identities=12% Similarity=0.056 Sum_probs=207.0
Q ss_pred hhhhhhhhhhhc-----CCcHHHHHHHHHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhhhhchhhHHHHHHhcccC--c
Q 008070 222 DRIVGGIWADKF-----GGKPVLGFGVIWWSVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP--V 292 (579)
Q Consensus 222 ~~~~~G~l~Dr~-----Grr~~l~~~~~~~~~~~ll~~~a~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~--~ 292 (579)
..++.|.++|-+ .||+.++++.++..++.+.++..+. .+.....++-++..+|.+....++.+++.|... +
T Consensus 40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p 119 (433)
T PF03092_consen 40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREP 119 (433)
T ss_pred HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Confidence 348999999986 3566677788777666666665542 135566677788899999999999999999984 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcCCcc
Q 008070 293 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSIS 372 (579)
Q Consensus 293 ~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (579)
++++...+.......+|.+++..++|.+.+..++++.|.+.+++.++..+..++..+|+++..........++.......
T Consensus 120 ~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
T PF03092_consen 120 ESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFG 199 (433)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhH
Confidence 44788888889999999999999999999999999999999888887777667766652221111000000000000000
Q ss_pred cccccchhHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC---CChhhhhHHhHHHHHHHHHHHHHHHHHh
Q 008070 373 KEAVSVIPWKLILSKAPVWALII-SHFCHNWGTFILLTWMPTYYNQVLK---FNLTESGLFCVLPWLTMAVFANMGGWIA 448 (579)
Q Consensus 373 ~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~~~~~p~~l~~~~g---~s~~~~g~~~~~~~~~~~ig~~~~g~l~ 448 (579)
..++.....+..++.+.+|...+ ..++............-.+..+..+ +++...+.+..+..++.++|..+..+..
T Consensus 200 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~ 279 (433)
T PF03092_consen 200 SFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYF 279 (433)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112234555677777776666 2222221111110100112233355 8888888887777777777777666655
Q ss_pred hhhhccCcchHHHHHHHHHHHHHHHHHHHH---Hhhc-------cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc
Q 008070 449 DTLVSKGLSITAVRKIMQSIGFLGPAFFLT---QLSH-------VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY 518 (579)
Q Consensus 449 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (579)
.+..-|+++. ...++.....+. .... .+.+....-..+..........+......+..|+..
T Consensus 280 ~~~~~R~~~~--------~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~ 351 (433)
T PF03092_consen 280 SNWSWRRIFV--------VTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGS 351 (433)
T ss_pred hCCCHHHHHH--------HHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 5544443221 111111111111 0000 111111111122222222333445555667789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRGS--------WDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g--------~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
.|+.+|+...+.++|..++..++..+.+..+ .....++..++.++.+.+..++.+++
T Consensus 352 Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 352 EGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999988754 33445555555555555554555433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-14 Score=155.26 Aligned_cols=340 Identities=12% Similarity=0.117 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh----------------------------
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA---------------------------- 257 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~---------------------------- 257 (579)
...+++.+..-+...+..++..++.+|..|-+++-+|.++++++.+++++-+
T Consensus 38 ~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~ 117 (539)
T PF03137_consen 38 SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSS 117 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccc
Confidence 3446666666677777778888888888887888888888888888765311
Q ss_pred --------------------ccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHH
Q 008070 258 --------------------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVS 317 (579)
Q Consensus 258 --------------------~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~ 317 (579)
..-+..++++.++.|+|.+..++...+++-|.+++++-+..+|++.....+|.++|-+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg 197 (539)
T PF03137_consen 118 SSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLG 197 (539)
T ss_dssp ----------------------------------SSS-------------------------------------------
T ss_pred ccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHH
Confidence 001356788999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc---------------------C-cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH---HHHh---hhhcC
Q 008070 318 PILIQKF---------------------G-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA---EEKR---HILGG 369 (579)
Q Consensus 318 ~~l~~~~---------------------g-wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~~ 369 (579)
+.+...+ | |..-|++.+++.++..+..+.++++-|...+.... ++.+ ...+.
T Consensus 198 ~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~ 277 (539)
T PF03137_consen 198 SFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDS 277 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhc
Confidence 8876421 2 66677777877777777777776655554111000 0000 00000
Q ss_pred Ccc---------cccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH-HHHH
Q 008070 370 SIS---------KEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAV 439 (579)
Q Consensus 370 ~~~---------~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~i 439 (579)
..+ ..+......+.+++||.+....+...+......++.+++|-|++.+++.++.++.++.....+ ++++
T Consensus 278 ~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~ 357 (539)
T PF03137_consen 278 FKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAAL 357 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhhe
Confidence 000 112223456778999999999999999999999999999999999999999999988766665 6778
Q ss_pred HHHHHHHHhhhhhcc--CcchHHHHHHHHHHHHHH-HHHHHHH----------hhc------------------------
Q 008070 440 FANMGGWIADTLVSK--GLSITAVRKIMQSIGFLG-PAFFLTQ----------LSH------------------------ 482 (579)
Q Consensus 440 g~~~~g~l~dr~g~~--~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~------------------------ 482 (579)
|.+++|++.+|++-+ +...... +...+.++. ...+++. ...
T Consensus 358 G~llGG~ivkk~kl~~~~~~~~~~--v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~ 435 (539)
T PF03137_consen 358 GILLGGYIVKKFKLSARGAAKFCI--VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGN 435 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ehheEEEEEEEecCcHHHHHHHHH--HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCc
Confidence 889999999998543 2222111 111111111 0000000 000
Q ss_pred ------------cchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 008070 483 ------------VRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGV-LAGVFGTAATGYILQR 547 (579)
Q Consensus 483 ------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~-lg~~ig~~l~g~l~~~ 547 (579)
.......++. ++..+.......+........+++++|+.+.|+..++.. +|.+-||.++|++.|.
T Consensus 436 ~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 436 GSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 0001111111 222223333344555556677899999999999887755 5778899999999996
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3e-11 Score=126.07 Aligned_cols=174 Identities=16% Similarity=0.149 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
++.++.+.+..++...+.+....++|.|+++++|++..+.|++.+...++.+++.++.|+++||+|+|+.+..+. ..
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~--~~- 82 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI--TA- 82 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH--HH-
Confidence 345677778888888888999999999999889999999999999999999999999999999999997654322 11
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
......+.. ..++.+..+++..+.+.......+.... ..+..++++|++++|+.+...++|.+++|.+.+.+.
T Consensus 83 ----~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 83 ----FASGFIAIP--LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred ----HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1222333332222222222222232333 345567888999999999999999999999999988
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 546 QRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 546 ~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
+ .+|+..|.+.+++.+++.++..+
T Consensus 157 ~-~g~~~~f~~~~~~~~i~~i~~~~ 180 (395)
T PRK10054 157 M-QSINLPFWLAAICSAFPLVFIQI 180 (395)
T ss_pred H-hccCcHHHHHHHHHHHHHHHHHH
Confidence 6 68999999888877776554433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-10 Score=113.55 Aligned_cols=227 Identities=17% Similarity=0.185 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
.+..+...++....+..++.|.++||+|||+..++..++.+++++..- .+ +++.++++|++.|++.+....+..+++
T Consensus 70 qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~--~~~~L~~GRvlgGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 70 QIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-SS--NYPVLLLGRVLGGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-cc--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888888889999999999999999999999999887544 45 799999999999999999999888876
Q ss_pred hccc-----CcCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcccCc--chHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 287 SKWI-----PVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 287 ~~~~-----~~~~r~~~~g~~~-~~~~lG~~lgp~i~~~l~~~~gw--r~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
..-. |++..+..++... ...++-.++..+++-++.+..+. ..+|....++.++..++.....+|...+..+.
T Consensus 147 V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~ 226 (354)
T PF05631_consen 147 VHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS 226 (354)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc
Confidence 5433 2233344444444 33445556666677777766554 78888877777776666665555544332211
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhhhhHHhHHHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTM 437 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~ 437 (579)
.+..+. ....++.++++|+++.+.++..++-..++.+.. |.|..- . +-...-.|++++.+.+..
T Consensus 227 ~~~~~~------------~~~a~~~i~~d~ril~LG~~qslFE~smy~FVflWtPaL~-~--~~~~~P~GlIFssFM~a~ 291 (354)
T PF05631_consen 227 SSLSGS------------FREAWRAILSDPRILLLGLIQSLFEGSMYLFVFLWTPALD-P--DDEELPLGLIFSSFMVAM 291 (354)
T ss_pred cchHHH------------HHHHHHHHHcCchhHHHHHHHHHHHHHHHHheeeeeceec-C--CCCCCCchHHHHHHHHHH
Confidence 111110 012356688899999999999999999888776 455443 2 112345799999999999
Q ss_pred HHHHHHHHHHhhhh
Q 008070 438 AVFANMGGWIADTL 451 (579)
Q Consensus 438 ~ig~~~~g~l~dr~ 451 (579)
++|+.+..++..+.
T Consensus 292 MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 292 MLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHhCC
Confidence 99998887665543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-11 Score=124.52 Aligned_cols=188 Identities=18% Similarity=0.097 Sum_probs=132.8
Q ss_pred hhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcch
Q 008070 379 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI 458 (579)
Q Consensus 379 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~ 458 (579)
.+++.+++++.++.+.+..++..++.......+|.+.++ ++.++.+.|++.+...++.+++.++.|+++||+++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~ 86 (417)
T PRK10489 8 LDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQM-MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLIL 86 (417)
T ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEE
Confidence 345656678888888888888888888888889988877 6779999999999999999999999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHH
Q 008070 459 TAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFG 537 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig 537 (579)
.+. .+.+++.+...... ....+..+...+. +..+.+.............+.+++++++++.++.+....+|..+|
T Consensus 87 ~~~--~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 162 (417)
T PRK10489 87 LAR--GTCGLGFIGLALNA--FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVIS 162 (417)
T ss_pred ehH--HHHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhH
Confidence 532 22222222211111 1112222333222 222322222222333334455677889999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 538 TAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 538 ~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
|.++|.+.+..+|++.|.+.++..+++.++.+.+
T Consensus 163 ~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (417)
T PRK10489 163 PALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL 196 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998899999988887777666655544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=133.73 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.+..++..+...++.++.|+++||+|||++++++.++.+++.++.++.+ +...+++.+++.|++.+..++...++
T Consensus 595 ~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~--s~~~ll~~~~l~g~~~~~~~~~~~a~ 672 (742)
T TIGR01299 595 YMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN--SESAMIALLCLFGGLSIAAWNALDVL 672 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777788888999999999999999999999999999999999988 77778888899999888889999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
++|++|.++|++++|+..++..+|.++||++++.+... +...+|++.+++.++.+++.++ +||+
T Consensus 673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~-LPET 736 (742)
T TIGR01299 673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK-LPDT 736 (742)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 99999999999999999999999999999999988764 4566777777766665555554 3543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=121.90 Aligned_cols=171 Identities=14% Similarity=0.042 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~ 467 (579)
..++..++..++.++....+..++|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|+.+..+. .+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~--~~~~ 99 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL--IATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH--HHHH
Confidence 344455555565555556677788888877 8999999999999999999999999999999999997654322 1111
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHH-HHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 468 IGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
++ .......+..+...+.. +.+.+.+...........+.+++++|++++|+.+....+|..+++.+.+.+.+
T Consensus 100 ~~-------~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 100 II-------NILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HH-------HHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111122333333222 22222222223333334455677899999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHH
Q 008070 547 RGSWDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 547 ~~g~~~~~~~~~~~~~l~~~~~ 568 (579)
..||+..|.+.+++.++..++.
T Consensus 173 ~~gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 173 HYGWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 9999999998887765554433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-11 Score=118.57 Aligned_cols=179 Identities=12% Similarity=0.105 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~ 467 (579)
..+....+.+..+++.--.+..-.|...++ .++|.++.|.+.+.+.+...++-++.|.++||.+.|..+ .
T Consensus 29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~-~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm---------~ 98 (448)
T COG2271 29 QIFLSIFIGYAAFYLTRKNFNLAMPALIED-GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM---------A 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee---------h
Confidence 334444555555555555555566666666 789999999999999999999999999999999999544 3
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhh-hhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH--HHH
Q 008070 468 IGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG-LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT--GYI 544 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~--g~l 544 (579)
.++++.++..+.+...+...++.++..+.+.+.+...+. .-.+..-.++++||+..++-|+..++|+++.|++. +++
T Consensus 99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~ 178 (448)
T COG2271 99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence 444444555445555556666666666655555555444 44455667889999999999999999999999999 999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 008070 545 LQRGSWDDVFKVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 545 ~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
..+++|+.+|++-+++.++..++.+...|+++
T Consensus 179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998888777777766554
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-10 Score=120.15 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHH
Q 008070 391 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF 470 (579)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 470 (579)
+.+....++...+.+....+++.|+++++|++..+.|+..+...+...+..++.|+++||+++|+.+..+. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~-------~~ 85 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGM-------LM 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHH-------HH
Confidence 45567777788888888999999998889999999999999999999999999999999999997654322 11
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhh-hhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 471 LGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG-LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
.......... .+..+...+...+.+...+...+. .....+..+++++++++|+.+....+|..+||.++|++. ..|
T Consensus 86 ~~~~~~~~~~--~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g 162 (400)
T PRK11646 86 RAAGFATMAI--AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD 162 (400)
T ss_pred HHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 1111111111 223333333333322222333333 333455567899999999999999999999999999999 679
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
|+..|++.+++.++..++....
T Consensus 163 ~~~~f~~~~~~~~~~~i~~~~~ 184 (400)
T PRK11646 163 FRLVCATGAVLFVLAAAFNAWL 184 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887776665544333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=120.66 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=122.4
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHH
Q 008070 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIM 465 (579)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~ 465 (579)
.++++..+.+..++...+.......+|.++.+.+|.++.+.|++.+...++..++.++.|+++||+|||+++..+. ..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~--~~ 90 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL--CG 90 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH--HH
Confidence 3566777888888888888888889999988889999999999999999999999999999999999998765432 11
Q ss_pred HHHHHHHHHHHHHHhhc--cchhHHHHH-HHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSH--VRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
..++.+...... .... .......++ -++.+.+.....+.......+..++++|++++++......+|..+++.+++
T Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~ 169 (399)
T PRK05122 91 CALSGLLYLLAG-LLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGV 169 (399)
T ss_pred HHHHHHHHHHhh-hhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHH
Confidence 111111111110 0000 011222222 233333333333333333445577899999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHH
Q 008070 543 YILQRGSWDDVFKVAVVLYIIGT 565 (579)
Q Consensus 543 ~l~~~~g~~~~~~~~~~~~~l~~ 565 (579)
.+.+..||+..+.+..++.++..
T Consensus 170 ~l~~~~g~~~~~~~~~~~~~~~~ 192 (399)
T PRK05122 170 LLYHWGGLAGLGLLIMLLALLGL 192 (399)
T ss_pred HHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999988877666554433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-10 Score=120.11 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=121.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-hccCcchHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIM 465 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~~~~~~~~~ 465 (579)
.+.++.++...+...+.++++..++|.|+.+.+|+++.+++.+.....+...++.+++|+++||+ |+|+.+..+. .+
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~--il 85 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGA--LL 85 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHH--HH
Confidence 44566677777778888999999999999988999999999999999999999999999999999 9997654432 11
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCC--chhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPR--YAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
..++.+ ++...........+....+..+. +...+.... ..+..+++ .|.+++++.....++|+.++|.+.|
T Consensus 86 ~~lg~l-----ll~~~~~~~~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g 159 (493)
T PRK15462 86 MAIGHV-----VLGASEIHPSFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACG 159 (493)
T ss_pred HHHHHH-----HHHHhhcchhHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHH
Confidence 111111 11111111111111111111222 222222222 33444543 6899999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 543 YILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 543 ~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
++.+..||+..|.+.++.++++.+.++..
T Consensus 160 ~L~~~~Gw~~~F~iaaigm~l~li~~~~~ 188 (493)
T PRK15462 160 YAQEEYSWAMGFGLAAVGMIAGLVIFLCG 188 (493)
T ss_pred HHHhhhChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877766666655443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-11 Score=124.07 Aligned_cols=144 Identities=16% Similarity=0.215 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
..+.++..+...++.++.|++.||+|+|++++++.++.+++..+...... .+++.+++.+++.|++.+...+....++
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i 333 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFV 333 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566667789999999999999999999999888777766421 0245677889999999998889999999
Q ss_pred hcccCcCchhHHHHHHH-HHHHHHHHHHHHHHHHhhcc------cCcchHHHHhhHHHHHHHHHHHhhhcCCC
Q 008070 287 SKWIPVSERSRSLAFVY-SGMYLGSVTGLAVSPILIQK------FGWPSVFYSFGSLGSIWFALWLKKAYSSP 352 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~-~~~~lG~~lgp~i~~~l~~~------~gwr~~f~i~~~~~li~~~l~~~~~~~~~ 352 (579)
.+++|+++|++++|+.+ ...++|.++||+++|++.+. +||++.|++.+++.++..++.+++.+++.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999997 67889999999999999987 46999999998888888887777777553
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=121.77 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh-hhccCcchHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKI 464 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr-~g~~~~~~~~~~~~ 464 (579)
+.++.+.+..++..++++++..++|.|+++. +|++..+++.+.....++..++.+++|+++|| +|+|+.+..+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~--- 86 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGG--- 86 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHH---
Confidence 3456666777777889999999999999987 89999999999999999999999999999999 89997654332
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCC---chhHHHHHHHHHHHHHHHHHHHH
Q 008070 465 MQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPR---YAGVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~g~~~g~~~~~~~lg~~ig~~l 540 (579)
.+...+..+.... .+.....+...+.+.+. +...+.... ..+..+++ .|++++++.+...++|.++||.+
T Consensus 87 ----~~~~~g~~~~~~~-~~~~~~~~~~~l~g~g~-g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l 160 (475)
T TIGR00924 87 ----IVLMLGHFMLAMS-IYPDLIFYGLGTIAVGS-GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL 160 (475)
T ss_pred ----HHHHHHHHHHHhc-ccHhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence 1111111111111 11222222222333332 222233332 33334443 48889999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 541 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 541 ~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
.|++.+..||+..|.+.++..+++.+.+...+
T Consensus 161 ~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999998877766655554443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=120.58 Aligned_cols=176 Identities=18% Similarity=0.298 Sum_probs=126.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
.+.+|.+.+..++.....+.+..++|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|+|+....+. .+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~ 85 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI--VLF 85 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH--HHH
Confidence 3456777788888888888888899999987 8999999999998888999999999999999999997654321 111
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
.++. ..... ..+...+.+...+.+.+.....+.......+..+++++++++|+.+....+|..++|.+.|.+.+
T Consensus 86 ~~~~-----~~~~~-~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~ 159 (471)
T PRK10504 86 TLGS-----LFCAL-SGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE 159 (471)
T ss_pred HHHH-----HHHHH-hCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 1111 11111 12222333333333443333333333334555677889999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 547 RGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 547 ~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..||++.|.+...+.+++.++....
T Consensus 160 ~~gw~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 160 YASWHWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999877776666555544
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=118.72 Aligned_cols=174 Identities=15% Similarity=0.145 Sum_probs=116.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHH
Q 008070 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIM 465 (579)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~ 465 (579)
.++.++.+.+..++...+.......+|.++.+++|.+..+.|++.+...++..+++++.|+++||+|||+.+..+. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~--~~ 90 (392)
T PRK12382 13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM--LA 90 (392)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH--HH
Confidence 3555666666777777777777788898888779999999999999999999999999999999999998655432 11
Q ss_pred HHHHHHHHHHHHHH-hhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQ-LSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 466 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
..++.+...+.... .......+..++. .+.+.+.....+.......+..++++|++++|+......++..++|++++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~ 170 (392)
T PRK12382 91 CGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLL 170 (392)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111010000 0011122222222 233333332233333334455788999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHH
Q 008070 544 ILQRGSWDDVFKVAVVLY 561 (579)
Q Consensus 544 l~~~~g~~~~~~~~~~~~ 561 (579)
+.+..||+..+.+..++.
T Consensus 171 l~~~~g~~~~~~~~~~~~ 188 (392)
T PRK12382 171 LHSHFGFAALALTTMVLP 188 (392)
T ss_pred HHhccChHHHHHHHHHHH
Confidence 999899987766554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=117.35 Aligned_cols=175 Identities=16% Similarity=0.065 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHH
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL 471 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 471 (579)
.+.+..++..++.......+|.|..+ .+.++.+.+++.+...++.+++.++.|+++||+|||+.+..+. .+..++.+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~--~~~~~~~~ 79 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLA-GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGAD--LIRAVLVA 79 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHH--HHHHHHHH
Confidence 35566667777777778888998887 7899999999999999999999999999999999998654322 11111111
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 472 GPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
.... .........+...+...+.+.......+.... ..+..++++|++++|+.+....+|..++|.+.+.+.+..||
T Consensus 80 ~~~~--~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 80 VLPF--VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHH--HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1111 11111113333333333333333333333333 44556778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008070 551 DDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 551 ~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+..|++.++..+++.++...+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 158 KWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999988877776665555444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-10 Score=119.59 Aligned_cols=180 Identities=15% Similarity=0.203 Sum_probs=117.9
Q ss_pred Hhhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh-hhccCcchHHH
Q 008070 384 ILSKA-PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAV 461 (579)
Q Consensus 384 l~~~~-~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr-~g~~~~~~~~~ 461 (579)
.+++| .++..++..++..++++.+..+++.|+++.+|++..+++.+............+++|+++|| +|+|+.+..+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34565 48888888888999999999999999988899999988887777665555556789999999 59997654332
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCC--chhHHHHHHHHHHHHHHHHHHH
Q 008070 462 RKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR--YAGVLLGLSNTAGVLAGVFGTA 539 (579)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~ig~~ 539 (579)
.+..++ ..+..........+.+.....+.+.+...+.......+..+++ .++.++++.+...++|.+++|.
T Consensus 96 --~~~~ig-----~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~ 168 (500)
T PRK09584 96 --IVLAIG-----YALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSML 168 (500)
T ss_pred --HHHHHH-----HHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHH
Confidence 111111 1111111111112222222223322222222222333334433 3456788889999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 540 ATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 540 l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
+.|++.+..||+..|.+.++..+++.+.+++
T Consensus 169 i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~ 199 (500)
T PRK09584 169 ATPWLAAKYGWSVAFALSVVGMLITVVNFAF 199 (500)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766666544433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=120.05 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=120.5
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHH
Q 008070 384 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463 (579)
Q Consensus 384 l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~ 463 (579)
.+++|.+|.+.+..++...+...+..++|.|+.+++|+++.+.|++.+...++..+++++.|+++||+|+|+.+..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~ 85 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISG 85 (420)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 46789999999999999988888899999999998999999999999999999999999999999999999765432111
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhh----hhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDA----FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTA 539 (579)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~ 539 (579)
.. ++.. ............... ......+..... ...+......++ .+++++..+|.......+|..++|+
T Consensus 86 ~~--~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~ 159 (420)
T PRK09528 86 LL--VLFG--PFFIYVFAPLLQYNI-LLGAIVGGIYLGFGFLAGAGAIEAYIER-VSRRSGFEYGRARMWGSLGWALCAF 159 (420)
T ss_pred HH--HHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhccchhhhhhHHHH-HHhhccccchhhHHhhhHHHHHHHH
Confidence 11 0000 000000000000000 011111111111 111111112222 1345677888888999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 540 ATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 540 l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+.|.+.+. +|+..|++.+++.++..++.+...
T Consensus 160 ~~g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 160 IAGILFNI-NPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHHHHhc-CchHhHHHHHHHHHHHHHHHhccc
Confidence 99999874 788899888877777666655544
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=115.89 Aligned_cols=171 Identities=13% Similarity=0.030 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHH
Q 008070 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG 472 (579)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 472 (579)
.....++...........+|.+.++ +|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+. .+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~-------~~~~ 81 (385)
T TIGR00710 10 LGCLSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL-------FIFA 81 (385)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH-------HHHH
Confidence 3333344444555555566766665 8999999999999999999999999999999999997654321 1111
Q ss_pred HHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 473 PAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
....... ..+..+...+. ++.+.+.............+..++++|++++|+.+....+|..+++.+.+.+.+..+|+
T Consensus 82 ~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 159 (385)
T TIGR00710 82 LSSLGLA--LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWH 159 (385)
T ss_pred HHHHHHH--HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 1111111 12233333333 33333333333333333445567789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 008070 552 DVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 552 ~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
..+.+.+++.++..++.....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
T TIGR00710 160 AIFAFLSLAGILLSALIFFILP 181 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 9999888877776665554433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-10 Score=115.91 Aligned_cols=167 Identities=17% Similarity=0.317 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHH
Q 008070 394 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP 473 (579)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 473 (579)
++..++...........+|.++.+.+|.+..+.+++.+...++..++.++.|+++||+|+|+.+..+. .+...
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~-------~~~~~ 74 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGL-------LLFAL 74 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH-------HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehh-------hhhhh
Confidence 34556666667777777886666769999999999999999999999999999999999997544322 11111
Q ss_pred HHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 008070 474 AFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDV 553 (579)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~ 553 (579)
........ .+.+.+.+..++.+.+.....+.......+..++++|++++|+.+....+|..++|.+++.+.+..+|+..
T Consensus 75 ~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 75 GSLLLAFA-SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred HHHHhhhh-hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 11111111 33333333333444443344444444455556778999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008070 554 FKVAVVLYIIGTLVW 568 (579)
Q Consensus 554 ~~~~~~~~~l~~~~~ 568 (579)
|++.+++.++..++.
T Consensus 154 ~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 154 FLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhH
Confidence 999999988887753
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.9e-10 Score=116.15 Aligned_cols=172 Identities=15% Similarity=0.097 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
++.+.+..++.....+.....+|.+.++ +|.++.+.++..+...++..++.++.|++.||+|+|+++..+. ....++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~ 87 (390)
T PRK03545 11 VVTLALAAFIFNTTEFVPVGLLSDIAQS-FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF--VLFIAS 87 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHcchHHHHhH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHH
Confidence 3444444444333333344456766665 8999999999999999999999999999999999997654332 111111
Q ss_pred HHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008070 470 FLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG 548 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~ 548 (579)
. .. ....++.+...+. ++.+.+.....+.......+..++++|++++|+......+|..++|++.+.+.+..
T Consensus 88 ~-----~~--~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~ 160 (390)
T PRK03545 88 H-----VL--SALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL 160 (390)
T ss_pred H-----HH--HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 1 11 1112233333333 33333332222333333445567899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHh
Q 008070 549 SWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 549 g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
||+..|++.+++.++..++....
T Consensus 161 gw~~~f~~~~~~~~l~~~~~~~~ 183 (390)
T PRK03545 161 GWRTTFLAIGGGALITLLLLIKL 183 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888877766554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-10 Score=115.05 Aligned_cols=162 Identities=12% Similarity=0.055 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 008070 402 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS 481 (579)
Q Consensus 402 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
.....+...+|.+.++ +|+++.+.|++.+...++..++.+..|++.||+|||++... .+.......... ..
T Consensus 5 ~~~~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~-------~~~~~~~~~~~~-~~ 75 (368)
T TIGR00903 5 AIWVTFSPVLSLVAED-IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFG-------SLATFAAAAGRL-LD 75 (368)
T ss_pred HHHHHHHhhHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH-------HHHHHHHHHHHH-HH
Confidence 3445556677777776 89999999999999999999999999999999998854321 111111111111 11
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008070 482 HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 561 (579)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 561 (579)
..+...+.+.-++.+.+. +...+......+..|+++|++++++.+....+|..+++.+.+++.+..||+..|.+.+++.
T Consensus 76 ~~~~~~l~~~R~l~G~g~-~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 76 PFNYEWLLACQLLAALGQ-PFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred hccHHHHHHHHHHHHhHh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 112222222233333333 2333444445666888999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHhhc
Q 008070 562 IIGTLVWNLFAT 573 (579)
Q Consensus 562 ~l~~~~~~~~~~ 573 (579)
++..+++.+..+
T Consensus 155 ~~~~~~~~~~lp 166 (368)
T TIGR00903 155 AAGIILVLAALP 166 (368)
T ss_pred HHHHHHHHHHcC
Confidence 776665555444
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.9e-10 Score=117.37 Aligned_cols=178 Identities=12% Similarity=0.179 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh-hhccCcchHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAVRKIM 465 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr-~g~~~~~~~~~~~~~ 465 (579)
.+.++.++...+.-.+++|++..+++.|+++.+|++..+++++.....+...+..+++|+++|| +|+|+.+..+. .+
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~--~~ 90 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA--IV 90 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH--HH
Confidence 3456777778888889999999999999999899999999988888887788888899999999 99998766543 12
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCC--chhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPR--YAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
..++.+... ........+.+.....+.+.+...+.......+.+|++ +++.++++.....++|.++||.++|+
T Consensus 91 ~~~g~~~~~-----~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~ 165 (489)
T PRK10207 91 LAIGYFMTG-----MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV 165 (489)
T ss_pred HHHHHHHHH-----HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 222221111 11111111212222233333333333333344445555 45778999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 544 ILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 544 l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+.++.||++.|++.++..+++.+.+...
T Consensus 166 l~~~~gw~~~F~i~~i~~~~~~~~~~~~ 193 (489)
T PRK10207 166 IADKFGYSVTYNLCGAGLIIALLVYFAC 193 (489)
T ss_pred HHHhhChHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999998766555555444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.6e-10 Score=114.26 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~ 467 (579)
+.++.+.+..++...........+|.+.++ +|.+..+.+++.+...++..++.++.|++.||+|+|+.+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~------ 75 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLV------ 75 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH------
Confidence 456667777777777777888888887766 8999999999999999999999999999999999997654322
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 468 IGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
.+......+ ....++.+...+. ++.+.+.............+..+++++++++++......++..+++++.+++.+
T Consensus 76 -~~~~~~~~l--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 76 -ALCVIGNAM--FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred -HHHHHHHHH--HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 111111111 1122233333333 333333332222222223344566789999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHH
Q 008070 547 RGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 547 ~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
..+|+..|.+.+++.++..+....
T Consensus 153 ~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 153 EFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988877666554433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=114.24 Aligned_cols=173 Identities=18% Similarity=0.177 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh-----hhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTE-----SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~-----~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~ 463 (579)
.+..+.+..++...+......++|.|.++ +|.+..+ .+++.++..++..++.++.|+++||+|+|+.+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-- 91 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSA-- 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH-hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHH--
Confidence 44455666677777777788899999987 7888654 478888888999999999999999999997654321
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
....+ ...+.. .....+...+...+.+......+.......+..++++|++++|+.+....+|..++|.+.+.
T Consensus 92 ~~~~~-----~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 164 (408)
T PRK09874 92 LGMGI-----VMVLMG--LAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGL 164 (408)
T ss_pred HHHHH-----HHHHHH--HHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 111111 11223323222222222223333333334455677899999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 544 ILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 544 l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+.+..+|+..|.+.+++.+++.++..+.
T Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 165 LADSYGLRPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877766655444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-09 Score=112.74 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH 482 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
..+.....+|.+.++ +|+++.+.++..+...++..++.++.|++.||+|||+.+..+. .+..+ ...... .
T Consensus 35 ~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~--~~~~~-----~~~~~~--~ 104 (394)
T PRK10213 35 VEFLPVSLLTPMAQD-LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFA--VLLTL-----SCLLVS--F 104 (394)
T ss_pred HHHHHHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH--HHHHH-----HHHHHH--H
Confidence 334444567777666 8999999999999999999999999999999999997654332 11111 111111 1
Q ss_pred cchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008070 483 VRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 561 (579)
Q Consensus 483 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 561 (579)
.++.+..++. ...+.+.....+.......+.+++++|++++++......++..++|++++.+.+..||+..|++.+++.
T Consensus 105 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~ 184 (394)
T PRK10213 105 ANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMG 184 (394)
T ss_pred HChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2333333333 333433333333333334555778999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHH
Q 008070 562 IIGTLVWN 569 (579)
Q Consensus 562 ~l~~~~~~ 569 (579)
+++.++..
T Consensus 185 ~~~~l~~~ 192 (394)
T PRK10213 185 VLCIFWII 192 (394)
T ss_pred HHHHHHHH
Confidence 66554433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=116.49 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+..+++..++...-...+...+|.+..+ +|.+..+.+++...+.++..++.++.|+++||+|||+.+..+. .+..+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~--~~~~~ 83 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG--TLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHH
Confidence 34556666666666677777888988877 8999999999999999999999999999999999997654332 11111
Q ss_pred HHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhcccc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 469 GFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDI-GPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
+.+. ....++.+..++. .+.+.+.....+.......... ++++|++++|+......+|..+||.++|++.+
T Consensus 84 ~~~~-------~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 84 ASLA-------AAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred HHHH-------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1111 1112333333333 3334443333333333344444 56899999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 547 RGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 547 ~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+.||++.|++...+.++..++..+..+
T Consensus 157 ~~gwr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 157 HFYWGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988777766655555433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-08 Score=101.99 Aligned_cols=302 Identities=10% Similarity=0.073 Sum_probs=196.6
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 303 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~ 303 (579)
++...+.|..+.|++++++.+...+..++.-+.+ +...+-+..++.|++.+. ..+..+++-...|+++-.++.+...
T Consensus 59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~r 135 (412)
T PF01770_consen 59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTR 135 (412)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHH
Confidence 5677899999999999999999999999999998 899999999999999884 6888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc--cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC---hhh-c-----HHHHhhhhc---C
Q 008070 304 SGMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGSIWFALWLKKAYSSPKED---PEL-R-----AEEKRHILG---G 369 (579)
Q Consensus 304 ~~~~lG~~lgp~i~~~l~~~--~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~---~~~-~-----~~~~~~~~~---~ 369 (579)
...-+|..++.++|..++.. .+++...++......+.+++.+++ |..++.. +.. . +.+.+...+ .
T Consensus 136 aa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL-P~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~ 214 (412)
T PF01770_consen 136 AATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL-PMPKRSLFFHRKPPAEQDANESESDKMNESPES 214 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCcccceeccCcccccccccccccccccccc
Confidence 99999999999999988763 334445444444334444444444 3322210 000 0 000000000 0
Q ss_pred ---Cccccc----c-------cchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChhhhhHHhHHH
Q 008070 370 ---SISKEA----V-------SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNLTESGLFCVLP 433 (579)
Q Consensus 370 ---~~~~~~----~-------~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~~~~g~~~~~~ 433 (579)
..+... . -...++...++|.++...+-..+...+++-+..|......+. -+-....-|.+-+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~ 294 (412)
T PF01770_consen 215 SSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAAS 294 (412)
T ss_pred ccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHH
Confidence 000000 0 123455666788888888888888888888888888777764 233445568888888
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhh-hhhhcc
Q 008070 434 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG-LYSNHQ 512 (579)
Q Consensus 434 ~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 512 (579)
.+.+.++.+..|++..++.+... ..++...++.+..++........+...+..++......+..+. ...+..
T Consensus 295 tllgA~~al~~g~v~~~w~~~~~-------l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~ 367 (412)
T PF01770_consen 295 TLLGAIAALLAGYVKVNWDRWGE-------LALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAK 367 (412)
T ss_pred HHHHHHHHHHHhHhhcchHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999988555544322 2222333333333344445555666555555544444433333 333555
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHH
Q 008070 513 DIGPRYAGVLLGLSNTAGVLAGVF 536 (579)
Q Consensus 513 ~~~~~~~g~~~g~~~~~~~lg~~i 536 (579)
....+.-|-++|+++++..+-..+
T Consensus 368 ~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 368 NLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred hccccceeeeeeeHHHHHHHHHHh
Confidence 566677788888877765554433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=112.20 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.++..++..++.+...+.+..++|.++++.+|+++.+.+++.+...++.+++.++.|++.||+|+|+.+..+. .+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~i 79 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL--LLLAI 79 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHH
Confidence 3456667777777777888888898777779999999999999999999999999999999999997654332 11111
Q ss_pred HHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 469 GFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
+. .+.... ....+.. +..++.+.+ .....+......+..++++|+++.++......+|..+++.+.+.+...
T Consensus 80 ~~-----~~~~~~-~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 80 PC-----LWAGLA-VQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HH-----HHHHHH-hhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11 111111 1022222 222223322 223333333445556778999999999988888888888887776652
Q ss_pred ----------CChHHHH-HHHHHHHHHHHHH
Q 008070 548 ----------GSWDDVF-KVAVVLYIIGTLV 567 (579)
Q Consensus 548 ----------~g~~~~~-~~~~~~~~l~~~~ 567 (579)
.+|++.| ...+++.++..++
T Consensus 153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 183 (366)
T TIGR00886 153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALL 183 (366)
T ss_pred HHhcccccccccccchhHHHHHHHHHHHHHH
Confidence 3788888 4334444333333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-09 Score=112.23 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHH--HHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHH
Q 008070 399 CHNWGTFILLTWMPTY--YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF 476 (579)
Q Consensus 399 ~~~~~~~~~~~~~p~~--l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (579)
+...+......+.|.+ +.+.+|.++.+.+++.++..++..++.++.|+++||+|+|+.+..+. .+......
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-------~~~~~~~~ 86 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL-------SLFALGSL 86 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH-------HHHHHHHH
Confidence 3344444445555544 44558999999999999999999999999999999999997654321 11111111
Q ss_pred HHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 008070 477 LTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKV 556 (579)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~ 556 (579)
.... ..+.+.+.+..++.+.+.............+..++++++...+..+....++..++|.+.+++.+..||+..|++
T Consensus 87 ~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~ 165 (401)
T PRK11043 87 GMLW-VESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFAT 165 (401)
T ss_pred HHHH-hcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 1111 122222222223333332222222222344556677788889998888999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhc
Q 008070 557 AVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 557 ~~~~~~l~~~~~~~~~~ 573 (579)
.+++.++..++.+.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 166 LFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 88877776666555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-09 Score=113.98 Aligned_cols=173 Identities=13% Similarity=0.048 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
++...+.+++.+.....+....| .+++++|++..+.+++.+...++..++.++.|++.||+|+|+.+..+. .
T Consensus 10 ~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~-------~ 81 (412)
T TIGR02332 10 IIFLFILFIFSFLDRINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM-------V 81 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH-------H
Confidence 33344444444444455555556 566669999999999999999999999999999999999997543221 1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 008070 470 FLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ--- 546 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~--- 546 (579)
+......+... ..+...+.+.-++.+.+.....+.......+..++++|++++|+.+....+|..+++.+.+++.+
T Consensus 82 ~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 82 LWGIASTATMF-ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111111111 12222333333333444433333333334555677899999999999999999999999999875
Q ss_pred ---cCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 547 ---RGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 547 ---~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..||+..|.+.++..++..++..++
T Consensus 161 ~~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 161 LMALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 3699999999887776655544444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-09 Score=108.38 Aligned_cols=177 Identities=17% Similarity=0.147 Sum_probs=136.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
...++.+.+..|......+.....+|...+| +|.+...+|.+.+.+.++..++.++...+.+|+.||+++....
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l----- 85 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLL----- 85 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH-----
Confidence 3456778888888999999999999999999 8999999999999999999999999999999999997654321
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
.+....- ......+++...++. ++.+...+.+.........+.+||++|+++++++.+...++..+|.+++.++-
T Consensus 86 --~lFi~~n--~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig 161 (394)
T COG2814 86 --ALFIVSN--LLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG 161 (394)
T ss_pred --HHHHHHH--HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 1111111 111122334443333 33344443444444445666689999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 546 QRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 546 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
|..||+..|+..+++.+++.+..+...+
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999888877766655
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-09 Score=111.40 Aligned_cols=173 Identities=15% Similarity=0.106 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
+....+..+....+.......+|.+.++ +|.+..+.++..+...++..++.++.|+++||+|||+.+..+. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~-------~ 76 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGA-------A 76 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHH-------H
Confidence 3444455555555656666778887777 8999999999999999999999999999999999997554321 1
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 470 FLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
........... ..+.....+..++.+.+.............+..++++|+++.++.+....++..++|.+.+.+.+..+
T Consensus 77 ~~~i~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 77 LFIIASLLCSL-AETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHHHHHHHHHH-hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 11111111111 11222222222333333322233333344555678999999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
|+..+++.+++.++..++.+..
T Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~ 177 (392)
T PRK10473 156 WQSLFYTMAAMGILVLLLSLFI 177 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888777666654444
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.1e-10 Score=118.19 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHH
Q 008070 391 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF 470 (579)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 470 (579)
..+++..++...........+|.+.++ +|.+..+.+++.+...++.+++.++.|++.||+|||+.+..+. .+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-------~~ 76 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST-------FA 76 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH-------HH
Confidence 344555566666666677778887777 8999999999999999999999999999999999997654322 11
Q ss_pred HHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 471 LGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
...... .....++....++. .+.+.+.....+.......+..++++|++++++......+|..++|.++|++.++.+
T Consensus 77 ~~~~~~--~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 77 FTLGSL--LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHH--HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 111111 11122233333333 333333333333444445556778999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
|++.|++.+.+.++..++..+..
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHc
Confidence 99999988877766665554443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=111.83 Aligned_cols=169 Identities=11% Similarity=0.074 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHH
Q 008070 394 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGP 473 (579)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 473 (579)
.+..++...+.......+|.|+++++|.+..+.|++.+...+...+..++.|+++||+|+|+.+... +......
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~------~~~~~~~ 76 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILF------CCLLAAL 76 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH------HHHHHHH
Confidence 4556777777888888999999888999999999999999999999999999999999998753321 1111111
Q ss_pred HHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccc-cCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 474 AFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQD-IGPRYAGVL--LGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~--~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
...+. ...++++...+. .+.+.+.. ...+.......+ .+++.|+.+ .+.......+|..++|.+.+.+.+..|
T Consensus 77 ~~~~~--~~~~~~~~l~~~~~~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~ 153 (375)
T TIGR00899 77 ACLLF--AWNRNYFLLLVLGVLLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG 153 (375)
T ss_pred HHHHH--HhcchHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence 11111 112233322222 22222222 223333333333 344445433 677788889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
|+..|++.+++.++..++..+.
T Consensus 154 ~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 154 FTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888777666655443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=112.96 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=113.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
.+.+....+..++...+.+....+++.++++ +|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+. .+.
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~--~~~ 88 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGL--LLW 88 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH--HHH
Confidence 3455666677777777777777788988876 7999999999999999999999999999999999998654332 111
Q ss_pred HHHHHHHHHHHHHhhccchhHHHH-HHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAG-VFGTAATGYI 544 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~-~ig~~l~g~l 544 (579)
.++.+ ...........++... ...+.+.+.............+..++++|++++|+.+....+|. .++|.+.+.+
T Consensus 89 ~~~~~---~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l 165 (402)
T TIGR00897 89 CVGHA---AFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYA 165 (402)
T ss_pred HHHHH---HHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11111 1101011112232222 22223333322223333334455688999999999999999986 5899999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHH
Q 008070 545 LQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 545 ~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
.+..|+...++....+.+++.++
T Consensus 166 ~~~~g~~~~~~~~~~~~~~~~~~ 188 (402)
T TIGR00897 166 IPAFGEMNTLWSALAFVLTGGVI 188 (402)
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 98888766555444433333333
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=114.14 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
+|.+|.+....++.+.+...+..++|.|+.+++|+++.+.+++.+...++..+++++.|+++||+|||+.+..... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~--~- 77 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS--G- 77 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH--H-
Confidence 5778889999999999999999999999998899999999999999999999999999999999999986543211 1
Q ss_pred HHHHHHHHHHHHHhhc---cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSH---VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
..+............ ........+...+.+.......+.......+.. +.++..+|.......+|.+++|.++|.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~ 155 (396)
T TIGR00882 78 -LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGI 155 (396)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhh
Confidence 111111111111110 001111111111111111222222222222222 334567788888889999999999998
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 544 ILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 544 l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+.+ .+|+..|++.+++.++..++.+..
T Consensus 156 l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 156 LFS-IDPQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred hhc-cCchHHHHHHHHHHHHHHHHHHHh
Confidence 876 489999988888777766555443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-09 Score=113.87 Aligned_cols=161 Identities=15% Similarity=0.050 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHh
Q 008070 401 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQL 480 (579)
Q Consensus 401 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (579)
....+....++|.+.+ .+|++..+.+++.+...++..++.++.|+++||+|+|+.+..+. +..++.....
T Consensus 49 ~~~~~~~~~~~~~l~~-~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~---------~~~~~~~~~~ 118 (476)
T PLN00028 49 FVSTFAAAPLLPIIRD-NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL---------MLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH---------HHHHHHHHHH
Confidence 3333444445555554 48999999999988888999999999999999999996543221 1111111111
Q ss_pred hccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh----c-----CCh
Q 008070 481 SHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ----R-----GSW 550 (579)
Q Consensus 481 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~----~-----~g~ 550 (579)
......... +..++.+.+... ..+......+..++++||.++|+.+....+|..+++.+.+.+.. . .||
T Consensus 119 ~~~~s~~~l~~~r~l~G~~~~~-~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 119 SLVSSATGFIAVRFFIGFSLAT-FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 112222222 222333333322 22233334455677899999999988888888888776665532 2 489
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 008070 551 DDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 551 ~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+..|++.+++.++..++.+++.
T Consensus 198 r~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 198 RIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998888877666655543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-08 Score=102.45 Aligned_cols=323 Identities=10% Similarity=0.025 Sum_probs=181.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH------hhhcc-----C--HHHHHHHHHHHHhhhhc-h
Q 008070 213 FSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP------VAARI-----G--LPFLLIMRAFMGIGEGV-A 278 (579)
Q Consensus 213 ~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~------~a~~~-----~--~~~ll~~r~l~Gig~g~-~ 278 (579)
+...+...+..+..|.+.||..|.+++..+.++.-++..+.+ +.... + ...+++.-.+.|.-.-. .
T Consensus 45 l~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las 124 (432)
T PF06963_consen 45 LVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS 124 (432)
T ss_pred HHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 334445556668999999999999987777655443333211 11100 1 11122222222221111 1
Q ss_pred hhHHHHHHhccc------CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhh----
Q 008070 279 MPAMNNMLSKWI------PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKA---- 348 (579)
Q Consensus 279 ~~~~~~~i~~~~------~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~---- 348 (579)
.....++--||. +++.+.+.++.+.-.--+.-+++|++.|.+.+..+.+...++.++..++..++=.++.
T Consensus 125 ~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY 204 (432)
T PF06963_consen 125 IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVY 204 (432)
T ss_pred hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222334443 2455677788888888889999999999999988988888888777776655433222
Q ss_pred cCCCC---CChhhcHHHHhhhh-cCCc-----------ccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 349 YSSPK---EDPELRAEEKRHIL-GGSI-----------SKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPT 413 (579)
Q Consensus 349 ~~~~~---~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~ 413 (579)
...|. ++.....+...... .... +.-......|+..+++|.+.......+ .++...++......
T Consensus 205 ~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal-LY~TVLsf~~lmt~ 283 (432)
T PF06963_consen 205 NSVPALAVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL-LYFTVLSFGGLMTA 283 (432)
T ss_pred HhChHhcCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH-HHHHHhcCcHHHHH
Confidence 11111 11100000000000 0000 000111234666677776655444444 44445667778888
Q ss_pred HHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc--hhHH--H
Q 008070 414 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR--TPAM--A 489 (579)
Q Consensus 414 ~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~ 489 (579)
|+... |+++...|.+-....+.++.|.++..++.+|+|..+.-.++. ..- ..++..+.........+ .... +
T Consensus 284 yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l--~~q-~~~L~~~v~~~~~~~~~~~~~s~~~l 359 (432)
T PF06963_consen 284 YLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSL--WWQ-WVCLALCVVSFWAPGSPFSSISAYLL 359 (432)
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH--HHH-HHHHHHHHHHHhcCCCCchhhHHHHH
Confidence 99985 999999999999999999999999999999999776544432 211 22222222222222211 1111 1
Q ss_pred HHHHHH-HhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 490 VLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 490 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l 540 (579)
+....+ =.|..++=........+.+|+++||+..|+-+...++...+.-.+
T Consensus 360 ~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 360 LGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122223333444456667888999999999999998887765544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.6e-09 Score=109.59 Aligned_cols=177 Identities=13% Similarity=0.067 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHH-HHHHHHHHHHHHhhhhhccCcchHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWL-TMAVFANMGGWIADTLVSKGLSITAVRKIM 465 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~-~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~ 465 (579)
|.+.+.+.+..++...+...+...+|.|+.+.+|.++.+.|++.+...+ +.+++.+++++ .||+|+|+.+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~---- 88 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFC---- 88 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHH----
Confidence 6667777788888888888888999999988899999999998766555 55555555555 99999997533211
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhcccc-CCCch--hHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDI-GPRYA--GVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~--g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
.........+ ....+..+..++. ...++. .....+.......+. +++.| +...++.+....+|.+++|+++
T Consensus 89 --~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~ 163 (393)
T PRK15011 89 --CLLGVLACTL--FAWNRNYFVLLFVGVFLSSF-GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLA 163 (393)
T ss_pred --HHHHHHHHHH--HHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 1111111111 1112223322222 222222 223333333333332 33333 4455788888999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 542 GYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 542 g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+.+.++.||+..|++.+++.++..++.....+
T Consensus 164 ~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 164 YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999988877766665554433
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=110.35 Aligned_cols=170 Identities=9% Similarity=0.056 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+....+..+...+..+......|.+.++ +|++..+.+++.+...++..++.++.|+++||+|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~------- 84 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGE-FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI------- 84 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-------
Confidence 34455556666666666666677766555 8999999999999999999999999999999999997544321
Q ss_pred HHHHHHHHHHHhhccchhHHHH-HHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 469 GFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
.+...+..+. ......+... ..++.+.+.............+..++++|++++++.+....+|..+++.+.+.+.+.
T Consensus 85 ~~~~~~~~~~--~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 85 VLFSAGTLAC--GFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHH--HHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111111 1122233333 333333333333334444455667789999999999999999999999999999887
Q ss_pred CC--hHHHHHHHHHHHHHHHHHH
Q 008070 548 GS--WDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 548 ~g--~~~~~~~~~~~~~l~~~~~ 568 (579)
.+ |+..|.+.++..++..+..
T Consensus 163 ~~~~w~~~f~~~~~~~~~~~~~~ 185 (405)
T TIGR00891 163 WGDGWRALFFISILPIIFALWLR 185 (405)
T ss_pred cCccHHHHHHHHHHHHHHHHHHH
Confidence 65 9999887666555544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=111.92 Aligned_cols=159 Identities=11% Similarity=0.133 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH 482 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
..+.+..+.|.+.++ +|++..+.+++.+...++..++.++.|+++||+|||+.+..+. .+..++.+.. ..
T Consensus 18 ~~~~~~~~~~~~~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~--~~~~~~~~~~-------~~ 87 (377)
T TIGR00890 18 YVYTWTLLAPPLGRY-FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGG--ILYGLGFTFY-------AI 87 (377)
T ss_pred HHhhhhhHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhH--HHHHHHHHHH-------HH
Confidence 344555566665555 8999999999999999999999999999999999998765432 1111211111 11
Q ss_pred cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008070 483 VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562 (579)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~ 562 (579)
.++.+...+...+.+...+...........+..+++|+++.++......+|..+++++.+.+.+..||+..|.+.+++.+
T Consensus 88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 167 (377)
T TIGR00890 88 ADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFL 167 (377)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22333333333233222222222333333444567899999999999999998888888888888899999999888877
Q ss_pred HHHHHHHHh
Q 008070 563 IGTLVWNLF 571 (579)
Q Consensus 563 l~~~~~~~~ 571 (579)
+..++.+.+
T Consensus 168 ~~~~~~~~~ 176 (377)
T TIGR00890 168 LVIVLGAFL 176 (377)
T ss_pred HHHHHHHHh
Confidence 766555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-09 Score=109.80 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHH
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL 471 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 471 (579)
...+..++............|.+.++ +|.++.+.+++.+...++.+++.++.|++.||+|+|+.+..+. .+..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~-- 93 (406)
T PRK11551 19 LCFLVALLEGLDLQSAGVAAPRMAQE-FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV--ALFGLF-- 93 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH--HHHHHH--
Confidence 33444444455555566667777666 8999999999999999999999999999999999998755432 111111
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 472 GPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
...... ..+...+.+..++.+.+.....+.......+..++++|++++++.+....+|..+++.+.+.+.+..+|+
T Consensus 94 ---~~~~~~-~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 169 (406)
T PRK11551 94 ---SLATAQ-AWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWR 169 (406)
T ss_pred ---HHHHHH-hccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 111111 1222233333333333333333333334555567799999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008070 552 DVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 552 ~~~~~~~~~~~l~~~~~~~ 570 (579)
..|++.+++.++..++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 170 HIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877766555544433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.5e-09 Score=108.50 Aligned_cols=173 Identities=12% Similarity=0.075 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~ 467 (579)
+.++...+..++.......+...+|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|+.+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~------ 79 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEY-FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF------ 79 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------
Confidence 344555555555555556666778887765 8999999999999999999999999999999999997544321
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHH-HHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 468 IGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
.+......+.. ..+..+...+.. +.+.+.............+..++++|+.+.+..+....+++.++|.+.+.+.+
T Consensus 80 -~~~~i~~~l~~--~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 80 -ALMILAVAGLM--FSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred -HHHHHHHHHHH--HcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111111 122333333332 33332222222233334445566889999999888889999999999998875
Q ss_pred -cCChHHHHHHHHHHHHHHHHHHHH
Q 008070 547 -RGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 547 -~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
..||+..|.+.+++.++..++.+.
T Consensus 157 ~~~gw~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK03699 157 RSIEWYWVYACIGLVYVAIFILTLF 181 (394)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999888777665554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=111.45 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHH
Q 008070 397 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF 476 (579)
Q Consensus 397 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (579)
.+...........+.|.+.++ +|++..+.+++.+...++.+++.++.|++.||+|+|+.+..+. .+..+ ...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~~-----~~~ 97 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAE-WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI--LLFSV-----FTL 97 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH--HHHHH-----HHH
Confidence 333333444455566666655 8999999999999999999999999999999999997554322 11111 111
Q ss_pred HHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 008070 477 LTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFK 555 (579)
Q Consensus 477 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~ 555 (579)
+.. .....+...+. ++.+.+.....+.......+..++++|++++|+......+|..+++.+.+.+.+..||+..++
T Consensus 98 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~ 175 (398)
T TIGR00895 98 LCA--LATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY 175 (398)
T ss_pred HHH--HccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence 111 12233333333 333333333333333334455667889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q 008070 556 VAVVLYIIGTLVWNL 570 (579)
Q Consensus 556 ~~~~~~~l~~~~~~~ 570 (579)
+.+++.++..++...
T Consensus 176 ~~~~~~~~~~~~~~~ 190 (398)
T TIGR00895 176 VGGIAPLLLLLLLMR 190 (398)
T ss_pred hhhhHHHHHHHHHHH
Confidence 886555555444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5e-09 Score=109.25 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=116.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
+|.++.+++..++..++........+.+..+ ++.++.+.+++.+...+...+..++.|+++||+|||+++..+.. +.
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~--~~ 78 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKE-LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANG--IK 78 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHH--HH
Confidence 3456677777777777666666666666555 78889999999999999999999999999999999987765431 11
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
.++.+.... . ... .+.-++.+.+.....+.......+.++++++++++|+.+....++..+||.++|.+.+
T Consensus 79 ~~~~~~~~~-----~--~~~--~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~ 149 (393)
T PRK11195 79 LLGCLLMLF-----G--IHP--LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD 149 (393)
T ss_pred HHHHHHHHH-----H--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1 111 2222233444434444444445566788999999999999999999999999999998
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 547 RGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 547 ~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.. +...+.+.+.+.+++.+....+
T Consensus 150 ~~-~~~~~~i~~~~~~~~~~~~~~l 173 (393)
T PRK11195 150 PH-AEAALAVCALIYLLAALFNLFI 173 (393)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 64 6666666655555444444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-09 Score=111.99 Aligned_cols=178 Identities=11% Similarity=-0.004 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
++.++...+..+..+.....+....| ++++ .|+++.+.+++.+...++..++.++.|++.||+|+|+.+..+. .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~--~~~ 101 (438)
T TIGR00712 26 WQVFLGIFFGYAAYYLVRKNFALAMP-YLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhhH-HHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHH--HHH
Confidence 34444444444444444444455555 4555 5999999999999999999999999999999999998655332 111
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
+++.+.... . ...........+. ++.+.+.............+..++++||+++|+.+....+++.+++.+.+.+.
T Consensus 102 ~~~~~~~~~--~-~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 102 AAVMLLMGF--V-PWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHHHHHHhc--c-ccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 111111111 0 0001222222222 22232222222333333455577889999999999999999999998887655
Q ss_pred h-cCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 546 Q-RGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 546 ~-~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+ ..+|+..|++.+++.++..++.+++
T Consensus 179 ~~~~~w~~~f~~~~~~~~i~~~~~~~~ 205 (438)
T TIGR00712 179 AWFNDWHAALYFPAICAIIVALFAFAM 205 (438)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4789999999888877765544443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-09 Score=108.95 Aligned_cols=179 Identities=12% Similarity=0.055 Sum_probs=111.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
++.++...+..++.+...+.+....+.+-++.+|++..+.+++.++..++..+.++..|++.||+|.|++...+.
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~----- 107 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFST----- 107 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH-----
Confidence 456666666666666666666666666666469999999999999999999999999999999999997654332
Q ss_pred HHHHHHHHHHHHHhh---ccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLS---HVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
.+........... ..+++... ++.++.+.+ .............-.|++++|+++|+....+++|..+++++..
T Consensus 108 --ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 108 --AILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred --HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1111111111111 11233333 333333333 3344444444555577789999999997777777766665554
Q ss_pred HHH-----h-------------cCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 543 YIL-----Q-------------RGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 543 ~l~-----~-------------~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.+. + ..+++.+.++..++.++..++.++..+
T Consensus 185 ~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~ 233 (462)
T PRK15034 185 LVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMN 233 (462)
T ss_pred HHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 433 2 123666666777666666655555433
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=111.10 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008070 404 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV 483 (579)
Q Consensus 404 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (579)
...+....|. +.+.+|++..+.+++.+...++..++.++.|++.||+|+|+.+..+. .+..++..... . ..
T Consensus 10 ~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~--~~~~~~~~~~~-----~-~~ 80 (399)
T TIGR00893 10 RANLSFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFI--VIWGVFTGLQA-----F-AG 80 (399)
T ss_pred HHhhhHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHH--HHHHHHHHHHH-----H-Hc
Confidence 3444445555 45558999999999999999999999999999999999998765432 11111111111 1 11
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 008070 484 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII 563 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l 563 (579)
+.+.+.+...+.+.+.....+.......+..++++|++++++.+....+|..+++.+.+.+.+..+|+..|.+.+++.++
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 22233333333344433333333334455567789999999999999999999999999999999999999988887776
Q ss_pred HHHHHHHh
Q 008070 564 GTLVWNLF 571 (579)
Q Consensus 564 ~~~~~~~~ 571 (579)
..++..+.
T Consensus 161 ~~~~~~~~ 168 (399)
T TIGR00893 161 WGVLWLKF 168 (399)
T ss_pred HHHHhhhe
Confidence 66655444
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.7e-09 Score=107.99 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008070 404 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV 483 (579)
Q Consensus 404 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (579)
...+...+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|+|+.+..+. ............ .
T Consensus 29 ~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~-------~~~~~~~~~~~~--~ 98 (406)
T PRK15402 29 NDMIQPGMLAVVED-FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV-------AFFILTCLAILL--A 98 (406)
T ss_pred hhhHhcchHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH-------HHHHHHHHHHHH--H
Confidence 33344455655555 8999999999999999999999999999999999997654321 111111111111 1
Q ss_pred chhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008070 484 RTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYI 562 (579)
Q Consensus 484 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~ 562 (579)
...+...+. ++.+.+.............+..++++++++.++......++..++|.+.+.+.+..+|+..|++.+++.+
T Consensus 99 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~ 178 (406)
T PRK15402 99 QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAA 178 (406)
T ss_pred ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 223323222 2223222222223333344556778888999998888889999999999999999999999998888877
Q ss_pred HHHHHHHHh
Q 008070 563 IGTLVWNLF 571 (579)
Q Consensus 563 l~~~~~~~~ 571 (579)
++.+.....
T Consensus 179 ~~~~~~~~~ 187 (406)
T PRK15402 179 LSFFGLWRA 187 (406)
T ss_pred HHHHHHHHh
Confidence 766654443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-09 Score=111.58 Aligned_cols=185 Identities=13% Similarity=0.110 Sum_probs=136.6
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHH
Q 008070 384 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463 (579)
Q Consensus 384 l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~ 463 (579)
.+++|.|..+.+..++.+++......-++.++.+ ..-++...+++.+...+..++..+++|.++||+.||++++..-
T Consensus 6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~-- 82 (524)
T PF05977_consen 6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ-- 82 (524)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH--
Confidence 4788999999999999999888888888877776 4668999999999999999999999999999999998776432
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhh-ccccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSN-HQDIGPRYAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
.+..+.. ..+.++.......++.++++.++.+....+..+...+. .+.+++++...++++.++..++...+||.++|
T Consensus 83 ~~~~~~~--~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG 160 (524)
T PF05977_consen 83 LLRALVA--LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG 160 (524)
T ss_pred HHHHHHH--HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence 1111111 11111112222334444444444444455555555554 45577888999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 543 YILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 543 ~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.++...|...+|.+.++..++.++++..+++
T Consensus 161 ~Lva~~G~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 161 ILVAFFGAAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999988887777666555544
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-09 Score=107.35 Aligned_cols=169 Identities=8% Similarity=0.018 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHH
Q 008070 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG 472 (579)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 472 (579)
..+..++...........+|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+. ....
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~-------~~~~ 84 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM-------SIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH-------HHHH
Confidence 3333334344444444556777666 8999999999999999999999999999999999997654322 1111
Q ss_pred HHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 008070 473 PAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWD 551 (579)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~ 551 (579)
........ .+..+...+. ++.+.+.............+..++++++.++++.+....++..++|.+.+.+.+..||+
T Consensus 85 ~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 162 (394)
T PRK11652 85 LGTLVALF--AHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR 162 (394)
T ss_pred HHHHHHHH--HccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence 11111111 1222222222 22232222222222222233345678899999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008070 552 DVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 552 ~~~~~~~~~~~l~~~~~~~~ 571 (579)
..|.+.+++.++..++..+.
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~ 182 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARW 182 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99998877666554444333
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-08 Score=98.95 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhc
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 288 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~ 288 (579)
..+...-.+..++..+++.++.+|+..+.=+.+..+++.++.++.++++ +.+.-+++-++.+++.|.......++..
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~--~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP--SVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc--chhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3444444555666667788889998877667777788889999999998 8888889999999999988888888644
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCc--chHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcH-----H
Q 008070 289 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW--PSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRA-----E 361 (579)
Q Consensus 289 ~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gw--r~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~-----~ 361 (579)
.+++ ...+-+..+.+.++++|+..-..+.. .++ |.++++...+.++..+..++.++.++.+.+.... .
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~~~~ 213 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESEDEA 213 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCCCcc
Confidence 5543 35788888999999999988776666 554 7778777777666555555555543322111100 0
Q ss_pred HHhhhhcCC--cccccccchhHHHHh-hchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCC-hhhhhHHhHHHHHH
Q 008070 362 EKRHILGGS--ISKEAVSVIPWKLIL-SKAPVWALIISHFCHNWGTFILLT-WMPTYYNQVLKFN-LTESGLFCVLPWLT 436 (579)
Q Consensus 362 ~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~~~g~s-~~~~g~~~~~~~~~ 436 (579)
+......+. .+.+......+++-+ +-+.++..++-.+..++..|.++. ..|...-..-..+ ..+..++...+.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~G 293 (402)
T PF02487_consen 214 EDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPRDQYRWYQLLYQLG 293 (402)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHHHHHHHHHHHHHHH
Confidence 000000000 000111112222211 223333355555556666665544 3444332211222 34455566666666
Q ss_pred HHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhhhhhhhhhhccccC
Q 008070 437 MAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR-TPAMAVLCMACSQGSDAFSQSGLYSNHQDIG 515 (579)
Q Consensus 437 ~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (579)
..+++--...+ |+ |++.+... +..+-++... .-......+ .+..+++++..|...+.........+.++.+
T Consensus 294 VFISRSS~~~~--ri--r~lwils~---LQ~~nl~~~~-l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~ 365 (402)
T PF02487_consen 294 VFISRSSLPFF--RI--RRLWILSL---LQVINLVFLL-LQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVP 365 (402)
T ss_pred Hhhhhcceeee--eh--hhHHHHHH---HHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence 66665432221 22 33222211 1111111111 111111222 3333445555555555666666667788889
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 516 PRYAGVLLGLSNTAGVLAGVFGTAATGYI 544 (579)
Q Consensus 516 ~~~~g~~~g~~~~~~~lg~~ig~~l~g~l 544 (579)
+++|-.++|.....-.+|..++..++-.+
T Consensus 366 ~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 366 PEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999888888887777665443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.3e-09 Score=106.02 Aligned_cols=169 Identities=15% Similarity=0.191 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHH
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFL 471 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 471 (579)
.+.+..+.............|.+.++ +|.++.+.++..+...++..++.++.|+++||+|||+.+..+. ....++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~--~~~~~~~~ 79 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGL--LLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHH--HHHHHHHH
Confidence 34556666777777788888988877 6999999999999999999999999999999999998654322 11111111
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 472 GPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
. ... .+..+...+...+.+.......+.... ..+..++++|++++++.+....+|..++|.+.+.+.+..+|
T Consensus 80 ~-----~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 152 (352)
T cd06174 80 L-----LAF--ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGW 152 (352)
T ss_pred H-----HHH--hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1 111 123333333333333333333333333 44556678999999999999999999999999999999899
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 008070 551 DDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 551 ~~~~~~~~~~~~l~~~~~~~ 570 (579)
+..+.+.+++.+++.++..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~ 172 (352)
T cd06174 153 RWLFLILAILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888877776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-09 Score=107.23 Aligned_cols=152 Identities=13% Similarity=-0.014 Sum_probs=108.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
++.++.+++..++..........++|.|..+ +|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~----- 78 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ-EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLAS----- 78 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----
Confidence 4557778888888888888889999999987 7999999999999999999999999999999999997554321
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHH-HhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
.+...+..... ..++.+...+..++ +.+.....+.......+..++++|++++|.......+|..+|+.+.+.+.
T Consensus 79 --~~~~~~~~~~~--~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 79 --LIFAAGCAGLG--LMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred --HHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11111111111 12233333333333 33332332333333445567788999999999999999999999999987
Q ss_pred hcC
Q 008070 546 QRG 548 (579)
Q Consensus 546 ~~~ 548 (579)
+..
T Consensus 155 ~~~ 157 (381)
T PRK03633 155 TEL 157 (381)
T ss_pred ccc
Confidence 763
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-09 Score=108.84 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 008070 404 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV 483 (579)
Q Consensus 404 ~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (579)
...+...+|.+.++ +|+++.+.+++.+...++..++.++.|+++||+|||+.+..+. ....++ ...... ..
T Consensus 7 ~~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~--~~~~i~-----~~~~~~-~~ 77 (377)
T PRK11102 7 IDMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGT--LVFALA-----AVACAL-AQ 77 (377)
T ss_pred HHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHH--HHHHHH-----HHHHHH-Hc
Confidence 34455677888877 8999999999999999999999999999999999987544321 111111 111111 11
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 008070 484 RTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYII 563 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l 563 (579)
+.....+..++.+.+.............+..++++|++++++.+....+|..++|.+.+.+.+..+|+..|++.+++.++
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 157 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL 157 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 22222222333333333333333333445567788999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHh
Q 008070 564 GTLVWNLF 571 (579)
Q Consensus 564 ~~~~~~~~ 571 (579)
..++....
T Consensus 158 ~~~~~~~~ 165 (377)
T PRK11102 158 AAALVFFF 165 (377)
T ss_pred HHHHHHHh
Confidence 66555443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.6e-09 Score=107.50 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008070 405 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR 484 (579)
Q Consensus 405 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (579)
......+|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|+.+..+. .+.. +........+
T Consensus 26 ~~~~~~lp~i~~~-~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~-------~l~~--~~~~~~~~a~ 95 (393)
T PRK09705 26 TSVGPLLPQLRQA-SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISL-------LLIA--VGALMRELYP 95 (393)
T ss_pred hccchhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHH-------HHHH--HHHHHHHHCc
Confidence 4455677777766 8999999999999999999999999999999999997654332 1111 1111122223
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHH
Q 008070 485 TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYII 563 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~l 563 (579)
+++..++.-++.+...+...+.......+..+++|+.++|+......+|..+++.+.+++.++. +|+..+.+.++..++
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3333333333333333333333334444445688999999999999999999999999999884 899888776655554
Q ss_pred HHHHHHH
Q 008070 564 GTLVWNL 570 (579)
Q Consensus 564 ~~~~~~~ 570 (579)
..+.++.
T Consensus 176 ~~~~~~~ 182 (393)
T PRK09705 176 ALFAWWW 182 (393)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=108.13 Aligned_cols=157 Identities=12% Similarity=0.021 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 008070 408 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA 487 (579)
Q Consensus 408 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (579)
....| ++.+. |++..+.++..+...++..++.++.|+++||+|+|+++..+. .+..++.+...+ . .......+
T Consensus 49 ~~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~--~~~~i~~~~~~~--~-~~~~~~~~ 121 (452)
T PRK11273 49 ALAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGF--V-PWATSSIA 121 (452)
T ss_pred HHhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHH--HHHHHHHHHHHh--h-hcccccHH
Confidence 34455 55665 999999999999999999999999999999999998655432 111111111111 0 00111222
Q ss_pred HHHH-HHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 008070 488 MAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVF-GTAATGYILQRGSWDDVFKVAVVLYIIGT 565 (579)
Q Consensus 488 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i-g~~l~g~l~~~~g~~~~~~~~~~~~~l~~ 565 (579)
...+ .++.+.+.....+.......+..++++|++++|+.+....+|+.+ +|.+...+....+|+..|++.+++.++..
T Consensus 122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~ 201 (452)
T PRK11273 122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA 201 (452)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 2222 233333332222333334455567899999999999999988754 45443334344589999998887766655
Q ss_pred HHHHHh
Q 008070 566 LVWNLF 571 (579)
Q Consensus 566 ~~~~~~ 571 (579)
++.+++
T Consensus 202 ~l~~~~ 207 (452)
T PRK11273 202 LFAFAM 207 (452)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=106.41 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 008070 407 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP 486 (579)
Q Consensus 407 ~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (579)
...-+|...+ .++.+..+.++..+++.++..++.++.|+++||+|||+.+..+. .+..+ +..... ..++.
T Consensus 35 ~~p~l~~i~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~--~~~~~-----~~~~~~--~a~~~ 104 (413)
T PRK15403 35 IQPGIINVVR-DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGA--LIFTL-----ACAATL--FTTSM 104 (413)
T ss_pred hccCHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHH--HHHHH-----HHHHHH--HcCCH
Confidence 3334455444 48999999999999999999999999999999999997654332 11111 111111 12233
Q ss_pred HHHHHH-HHHHhhhhhhhhhhhhhhc-cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 008070 487 AMAVLC-MACSQGSDAFSQSGLYSNH-QDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 487 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~ 564 (579)
+..++. ++.+.+.. ...+...... +..+++++++++++.+....++..+||.+++.+.+..||+..|++.+++.+++
T Consensus 105 ~~l~~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~ 183 (413)
T PRK15403 105 TQFLIARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 333322 33333322 2222223333 34566788999999999999999999999999999899999999988887777
Q ss_pred HHHHHH
Q 008070 565 TLVWNL 570 (579)
Q Consensus 565 ~~~~~~ 570 (579)
.++.++
T Consensus 184 ~~~~~~ 189 (413)
T PRK15403 184 FVGLLL 189 (413)
T ss_pred HHHHHH
Confidence 665444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-08 Score=106.97 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
+....+..+.............|.+.+ .+|.++.+.++..+...++..++.++.|+++||+|+|+.+..+. ....++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~--~~~~~~ 96 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKA-DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSI--VAYSVG 96 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH--HHHHHH
Confidence 444445555555555555555565544 48999999999999999999999999999999999997654332 111111
Q ss_pred HHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008070 470 FLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG 548 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~ 548 (579)
.++ .......+...+. ++.+.+.............+..++++|+++.++......+|.++++.+.+.+.+..
T Consensus 97 ~~~-------~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~ 169 (426)
T PRK12307 97 TGL-------SGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169 (426)
T ss_pred HHH-------HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence 111 1111223333332 33333333333334444556677889999999999999999999999999999989
Q ss_pred ChHHHHHHHHHHH
Q 008070 549 SWDDVFKVAVVLY 561 (579)
Q Consensus 549 g~~~~~~~~~~~~ 561 (579)
+|+..|++..+..
T Consensus 170 ~w~~~f~i~~~~~ 182 (426)
T PRK12307 170 GWRAAFFVGLLPV 182 (426)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998755433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=106.23 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHH
Q 008070 391 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF 470 (579)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 470 (579)
+.+.+.+++.+.+......++|.|+++ +|++..++|++.+...+...++.++.+.++||++|+.... .....+.
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~-~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~ 80 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKG-IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIAL-----RLLALAS 80 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH-----HHHHHHH
Confidence 345566777777777888899999988 7999999999999999999999999999999998753211 1111111
Q ss_pred HHHHHHHHHhhccchhHHHHHHHH-HHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 471 LGPAFFLTQLSHVRTPAMAVLCMA-CSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
.+....+ ....+..+..++... .+.+... ..+.......+ .++++++.+|.......+|.+++|++.|.+.+..|
T Consensus 81 ~l~~~~~--~~~~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g 156 (382)
T TIGR00902 81 AIFAAAF--SAGAHNAWLLFIAIGLFALFFSA-GMPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD 156 (382)
T ss_pred HHHHHHH--HHhhhhHHHHHHHHHHHHHHHcc-chhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111111 112233343333333 3333322 33333333333 35778999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 008070 550 WDDVFKVAVVLYIIG 564 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~ 564 (579)
|+..|.+..++.++.
T Consensus 157 ~~~~f~~~~~~~~~~ 171 (382)
T TIGR00902 157 EQNILAILTAGLAFM 171 (382)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999988876554333
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-08 Score=108.98 Aligned_cols=165 Identities=8% Similarity=0.077 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+..+.+..++..+........+|.+..+ +|.++.+.+++.+...++.+++.++.|++.||+|+|+.+..+. .+..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~ 97 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGE-FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI--VLFSV 97 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHH
Confidence 34455555555556666666666766555 8999999999999999999999999999999999997544321 11111
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008070 469 GFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG 548 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~ 548 (579)
+.+. ... ..+...+.+..++.+.+.............+..++++|+.++++......+|..+++.+.+.+.+..
T Consensus 98 ~~~~-----~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 98 GTLA-----CGF-APGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred HHHH-----HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 1111 111 1122223333333333333333334444556677789999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 008070 549 SWDDVFKVAVVLYI 562 (579)
Q Consensus 549 g~~~~~~~~~~~~~ 562 (579)
+|+..|.+..+..+
T Consensus 172 ~w~~~f~~~~~~~~ 185 (496)
T PRK03893 172 GWRALFFIGILPII 185 (496)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999887544433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-09 Score=109.51 Aligned_cols=155 Identities=10% Similarity=0.094 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 008070 407 LLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP 486 (579)
Q Consensus 407 ~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (579)
+..++|.+..+ +|.+..+.+++.+...++..++.++.|+++||+++|+.+..+. .+..++ ..+... ....
T Consensus 38 ~~~~~~~i~~~-~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~--~~~~~~-----~~~~~~--~~~~ 107 (455)
T TIGR00892 38 VTVFFKELQQI-FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG--LLASLG-----MILASF--SSNV 107 (455)
T ss_pred hhhhHHHHHHH-hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH--HHHHHH-----HHHHHH--hhhH
Confidence 44566766665 8999999999999988888999999999999999997654322 111111 111111 1222
Q ss_pred HHHH-HH-HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 008070 487 AMAV-LC-MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 487 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~ 564 (579)
+... .. ++.+.+.....++.. ....+..+++|+++.|+.+....+|..++|++.+.+.+..||+..|++.+++.+++
T Consensus 108 ~~l~~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~ 186 (455)
T TIGR00892 108 IELYLTAGFITGLGLAFNFQPSL-TMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHC 186 (455)
T ss_pred HHHHHHHHHHHHhcchhhhhHHH-HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 2222 11 222323222223333 23333346889999999999999999999999999999999999999999887766
Q ss_pred HHHHHHhh
Q 008070 565 TLVWNLFA 572 (579)
Q Consensus 565 ~~~~~~~~ 572 (579)
.++.+++.
T Consensus 187 ~v~~~~~~ 194 (455)
T TIGR00892 187 CVCGALMR 194 (455)
T ss_pred HHHHHHhC
Confidence 65554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=109.88 Aligned_cols=138 Identities=13% Similarity=0.104 Sum_probs=98.2
Q ss_pred HHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHH-HHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCc
Q 008070 216 FLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVL-TPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE 294 (579)
Q Consensus 216 ~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll-~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~ 294 (579)
.++..++.++.|+++||+|||++++++.++..++.+. .......+...+++.+++.|++.+........++.+++|++.
T Consensus 296 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~ 375 (490)
T PRK10642 296 MIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI 375 (490)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 3444455578999999999999988887654433332 222221156777888999998877777778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchHHHHhhHHHHHHHHHHHhhhcCCCCC
Q 008070 295 RSRSLAFVYSGMYLGSVTGLAVSPILIQKF-GWPSVFYSFGSLGSIWFALWLKKAYSSPKE 354 (579)
Q Consensus 295 r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-gwr~~f~i~~~~~li~~~l~~~~~~~~~~~ 354 (579)
|+.++++......++..++|.+.+++.+.. +|+.++++..+.+++.++..+ +.||+|+.
T Consensus 376 Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~ 435 (490)
T PRK10642 376 RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR 435 (490)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence 999999855556666788999999888754 477777766666555555444 44666653
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-08 Score=103.68 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
++.+++..+...+........+|.+. +.+|.+..+.|++.+...++..++.++.|++.||+|+|+.+..+. .+..++
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~-~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~--~l~~~g 81 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQ-QAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL--FLYALG 81 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH--HHHHHH
Confidence 45556666666666666667777764 458999999999999999999999999999999999997654432 111111
Q ss_pred HHHHHHHHHHhhccchhHHHHH-HHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 008070 470 FLGPAFFLTQLSHVRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR- 547 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~- 547 (579)
.+. ........+++..++ .++.+.+.............+..+++++++..++.+....+|..++|.+.+.+...
T Consensus 82 ~~l----~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~ 157 (410)
T TIGR00885 82 AFL----FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN 157 (410)
T ss_pred HHH----HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 111 111111223333333 33333333333333333333445678899999999999999999999999988533
Q ss_pred -------------------------CChHHHHHHHHHHHHHHHHHHH
Q 008070 548 -------------------------GSWDDVFKVAVVLYIIGTLVWN 569 (579)
Q Consensus 548 -------------------------~g~~~~~~~~~~~~~l~~~~~~ 569 (579)
.+|+..|.+.+++.++..++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588889888877666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=101.95 Aligned_cols=178 Identities=15% Similarity=0.135 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~ 467 (579)
+.++.-.++....+...+. ..-+...+.+.+|+++.|.+++.++..+.+.+.+++.|.+.||+|.|++.....
T Consensus 14 ~~L~~S~~af~v~F~VW~l-~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~------ 86 (417)
T COG2223 14 RNLWLSTLAFDVGFMVWTL-FSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM------ 86 (417)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH------
Confidence 3444444444443333333 333344444669999999999999999999999999999999999997654321
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 468 IGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
+.+++..+.+......+..+..+++-.+.+..+......+.....-.||+++|.++|++. .+++|..+...+...+...
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 222222233222222332233333333333333334445555566688899999999988 9999999999999999999
Q ss_pred CC---hHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 548 GS---WDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 548 ~g---~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.| |+.+..+..+..++..++.++..+
T Consensus 166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 166 FGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88 888888888887777666666543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=105.40 Aligned_cols=163 Identities=10% Similarity=-0.053 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHH
Q 008070 396 SHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAF 475 (579)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 475 (579)
.+++++.+...+..++|.|+++ +|.+..++|++.+...+...++.++.|.+.||++|+.... + .+..... ....
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~-~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~---~-~~~~~~~-~~~~ 85 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKG-QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPAL---R-LLALLTL-LFAV 85 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh-cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHH---H-HHHHHHH-HHHH
Confidence 3555666777888899999988 7999999999999999999999999999999999853211 0 1111111 1111
Q ss_pred HHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 008070 476 FLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFK 555 (579)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~ 555 (579)
. .....+..+...+...+.+.......+.......+. .++++++.|.......+|.++||+++|++.++.||+..|+
T Consensus 86 ~--~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 86 A--FWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred H--HHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 1 111223334333333322222233333333333333 4557788888888899999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 008070 556 VAVVLYIIGTLV 567 (579)
Q Consensus 556 ~~~~~~~l~~~~ 567 (579)
+.++..++..++
T Consensus 163 ~~~~~~~~~~~~ 174 (382)
T PRK11128 163 ILTAGVASMLLG 174 (382)
T ss_pred HHHHHHHHHHHH
Confidence 877655554443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=109.42 Aligned_cols=164 Identities=15% Similarity=0.014 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHH
Q 008070 398 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFL 477 (579)
Q Consensus 398 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (579)
++.+.....+....|.+. +.+|++..+.+++.+...++..++.++.|+++||+|+|+.+..+. .+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~~~~---- 77 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLV-EEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGL--ILCAIVNLFF---- 77 (379)
T ss_pred hHHHHhHHhhhhhhHHHH-HHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHH--HHHHHHHHHH----
Confidence 344455555666667554 448999999999999999999999999999999999998665432 1111111111
Q ss_pred HHhhccchhHHHHHHHHHHhhhhhhhhhhhh-hhccccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhcCChHHHHH
Q 008070 478 TQLSHVRTPAMAVLCMACSQGSDAFSQSGLY-SNHQDIGPRYAGVLLGLSNTAGVLAGVFGT-AATGYILQRGSWDDVFK 555 (579)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~-~l~g~l~~~~g~~~~~~ 555 (579)
. .....+...+...+.+...+...+... ...+..++++|+++.|+.+....+|..+++ .+.+.+.+..+|+..|+
T Consensus 78 -~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T TIGR00881 78 -G--FSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI 154 (379)
T ss_pred -H--HhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence 1 112333333333333333333333333 445556778899999999999999999999 46667777789999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 008070 556 VAVVLYIIGTLVWNLF 571 (579)
Q Consensus 556 ~~~~~~~l~~~~~~~~ 571 (579)
+.+++.++..++.++.
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (379)
T TIGR00881 155 VPGIIAIIVSLICFLL 170 (379)
T ss_pred HHHHHHHHHHHHHhee
Confidence 8887776655554444
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.2e-09 Score=109.91 Aligned_cols=161 Identities=16% Similarity=0.034 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT 485 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (579)
.+....|.+.++ +|++..+.|++.+...++..++.++.|+++||+|+|+++..+. .+.++.....+.. ......+
T Consensus 47 ~~~~~~~~i~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~--~~~~~~~~~~~~~--~~~~~~~ 121 (467)
T PRK09556 47 NFKAAQNDMIST-YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLL--ILSAICMLGFGAS--LGSGSVS 121 (467)
T ss_pred ChhhhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHH--HHHHHHHHHHHHH--Hhcccch
Confidence 344556766655 8999999999999999999999999999999999998765432 1112222221211 1112233
Q ss_pred hHHHHHHHHHHhhh-hhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHH
Q 008070 486 PAMAVLCMACSQGS-DAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG---SWDDVFKVAVVLY 561 (579)
Q Consensus 486 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~---g~~~~~~~~~~~~ 561 (579)
.+..+++-++.+.. ....+.......+.+++++||+++|+......+|.++++.+..++.+.. +|+..|.+.+++.
T Consensus 122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~ 201 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIA 201 (467)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHH
Confidence 33333333333333 3333333344555577889999999999999999999999988777652 5888888877766
Q ss_pred HHHHHHHHHh
Q 008070 562 IIGTLVWNLF 571 (579)
Q Consensus 562 ~l~~~~~~~~ 571 (579)
++..++.+++
T Consensus 202 ~~~~i~~~~~ 211 (467)
T PRK09556 202 LIIGFIGLRY 211 (467)
T ss_pred HHHHHHHHHh
Confidence 6555544444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-08 Score=119.87 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=112.8
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCC-ChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcch
Q 008070 384 ILSKAPVWALIISHFCHNWGTFILLTWMPTY----YNQVLKF-NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSI 458 (579)
Q Consensus 384 l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~----l~~~~g~-s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~ 458 (579)
+++++.++.+++..++..++.+.....++.+ +.+..+. +....++..++..+..++..++.|+++||+++|+++.
T Consensus 7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~ 86 (1140)
T PRK06814 7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK 86 (1140)
T ss_pred hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence 5677777776666666665544332222222 2221111 1245677777888899999999999999999997543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHH
Q 008070 459 TAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGT 538 (579)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~ 538 (579)
... ...++.....+......+.+.+++..++.+.+.....+.....+.+.+++++++.++|+.++...+|.++||
T Consensus 87 ~~~-----~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp 161 (1140)
T PRK06814 87 ILK-----FAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGT 161 (1140)
T ss_pred HHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHH
Confidence 211 111111111111111123333333334444444444444455556667889999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 539 AATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 539 ~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.++|++.+..+|...|.+.+++.+++.++.+.+
T Consensus 162 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1140)
T PRK06814 162 IIGGLATISGNFVILVALLMGIAVLGWLASLFI 194 (1140)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999988855555555555544444
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-07 Score=94.29 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=188.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccC
Q 008070 212 CFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP 291 (579)
Q Consensus 212 ~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~ 291 (579)
.++.+....+..++.+.+.|+.|.|+.++++...+.+..+..-+. |-+.+++...+.|+|.+..+..-..++++..+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~---N~y~~yfssallG~Gaallw~GqG~ylt~~st 132 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP---NSYYLYFSSALLGFGAALLWTGQGGYLTSNST 132 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc---chHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence 455566666677899999999999999999999999888877665 46778999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc--------Ccc-hH-------H---HHhhHHHHHHHHHHHhhhcCCC
Q 008070 292 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF--------GWP-SV-------F---YSFGSLGSIWFALWLKKAYSSP 352 (579)
Q Consensus 292 ~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~--------gwr-~~-------f---~i~~~~~li~~~l~~~~~~~~~ 352 (579)
++.+.+..++.......+.++|.++...+...- +-+ +. + .+.+++..+..+....... .|
T Consensus 133 ~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~-~p 211 (461)
T KOG3098|consen 133 RETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDF-LP 211 (461)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheee-cC
Confidence 999999999999999988888877665443211 111 11 1 1111111111111111111 11
Q ss_pred CCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCh-hhhhHH
Q 008070 353 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQV--LKFNL-TESGLF 429 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~--~g~s~-~~~g~~ 429 (579)
.+......+..+ ...........++++++++..+....+..++....+....|..+.-. .+.+. ...++.
T Consensus 212 ~~~~~~~~~~~~-------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~ 284 (461)
T KOG3098|consen 212 SKDVVNCKSSSE-------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIY 284 (461)
T ss_pred ccchhhhhhhcc-------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHH
Confidence 111000000000 00000112233456788887777777766665555555666554332 23332 334555
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh---hccCcchHHHHHHHHHHHHHHHHHHHHHhhcc--------------chhHHHHHH
Q 008070 430 CVLPWLTMAVFANMGGWIADTL---VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV--------------RTPAMAVLC 492 (579)
Q Consensus 430 ~~~~~~~~~ig~~~~g~l~dr~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 492 (579)
....+++.+++.+..+.+.+|. |++.....+. ++...+.+ +..+..+.. +......++
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~--~~~~~~~~---li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii 359 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGI--IIHLIGFL---LIHLSFPNDAPLRPTDSPPLLFTPSYYLALII 359 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHH--HHHHHHHH---HHhccccccCCCCCCcccccccccchhHHHHH
Confidence 5566677777777777777665 4444333221 11111111 111111100 123455566
Q ss_pred HHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 493 MACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYI 544 (579)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l 544 (579)
.++.+..........+.....+.|+++.++.++.-+-..++..++-......
T Consensus 360 ~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 360 GFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6666666777777777777777799999999888888877777666555443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-09 Score=110.93 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=104.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh---hhcc------CHHHHHHHHHHHHhhhhchhhHH
Q 008070 212 CFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV---AARI------GLPFLLIMRAFMGIGEGVAMPAM 282 (579)
Q Consensus 212 ~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~---a~~~------~~~~ll~~r~l~Gig~g~~~~~~ 282 (579)
.....++..++.+++|+++||+|||+.+.++.++.+++.++.++ .... +...+....++.+.......+..
T Consensus 325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (481)
T TIGR00879 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVP 404 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCee
Confidence 33444555667789999999999999999998888888777662 1110 12222223333332222334666
Q ss_pred HHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCC
Q 008070 283 NNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSP 352 (579)
Q Consensus 283 ~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~ 352 (579)
..++.|.+|+++|++++++......+|.+++|.+.+.+.+..+|++.|++.++++++.+++.+++.++.+
T Consensus 405 ~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 405 WVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred hhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 6778999999999999999999999999999999999999899999999998888887777766655443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-08 Score=99.57 Aligned_cols=158 Identities=11% Similarity=0.001 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhCCChhh-hhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 008070 408 LTWMPTYYNQVLKFNLTE-SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTP 486 (579)
Q Consensus 408 ~~~~p~~l~~~~g~s~~~-~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (579)
..+...++.+.+|++..+ .|.+...+..+..+..+++|+++||+|.|+++..+. +...+...........
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~---------l~Wsl~t~L~~fa~Sl 115 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQA---------LSFVCVWLLLLLGTSV 115 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH---------HHHHHHHHHHHHHHHH
Confidence 344555666679999999 999999999999999999999999999997544322 1111111111122223
Q ss_pred HHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH---HHHHHHHHH
Q 008070 487 AMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDV---FKVAVVLYI 562 (579)
Q Consensus 487 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~---~~~~~~~~~ 562 (579)
..+ +.=+++|.+-+... .....+..-+|+++|+++.|+.+....+|.++++++++++ ...||+.. .++..+...
T Consensus 116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~ 193 (511)
T TIGR00806 116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMT 193 (511)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Confidence 333 33334444443333 4444556668899999999999999999999999999994 45566544 445555556
Q ss_pred HHHHHHHHhhcCcc
Q 008070 563 IGTLVWNLFATGER 576 (579)
Q Consensus 563 l~~~~~~~~~~~~~ 576 (579)
+++++.+++.+.+|
T Consensus 194 ~a~~~a~~LP~~~~ 207 (511)
T TIGR00806 194 FSVFLALFLKRPKR 207 (511)
T ss_pred HHHHHHHhCCCCch
Confidence 66666666654433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-08 Score=99.98 Aligned_cols=169 Identities=9% Similarity=0.021 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-----hccCcchHHHHHHHHHH
Q 008070 394 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-----VSKGLSITAVRKIMQSI 468 (579)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~ 468 (579)
...++...........-+|.|+++ .|++.+++|++...... .+..+++|+++||+ |+||... ..+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l------~~~~ 75 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWL------LLTQ 75 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHH------HHHH
Confidence 344555666667777889999999 59999999998665554 57889999999999 7775322 1111
Q ss_pred HHHHHHHHH-HHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 469 GFLGPAFFL-TQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 469 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
......... .........+.+..+..+.........+.... ..+..++++|+++.++......+|..+++.+.+.+.+
T Consensus 76 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 76 VGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 111111111 11112222333333322222333333333333 4455677889999999999999999999999999998
Q ss_pred c-CChHHHHHHHHHHHHHHHHHHHHh
Q 008070 547 R-GSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 547 ~-~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
. .||+..|++.+++.++..+.....
T Consensus 156 ~~~gw~~~f~i~a~~~l~~~l~~~~~ 181 (402)
T PRK11902 156 RVLGWGNTYLLMAGLMLAGALTTLWA 181 (402)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 599999999888777665544433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-07 Score=101.50 Aligned_cols=179 Identities=12% Similarity=0.019 Sum_probs=117.5
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-----hccCcchH
Q 008070 385 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-----VSKGLSIT 459 (579)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-----g~~~~~~~ 459 (579)
.++++.+.+++..+............+|.++++ .|.+..+++.+.. .... .++.+++|.++||+ |||+..+.
T Consensus 9 ~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~-~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll 85 (491)
T PRK11010 9 FQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSL-VGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLL 85 (491)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH-HHHH-HHHHHHHHHHHHcccccCCCCchHHHH
Confidence 456667777777777777888888889999988 5999999998632 2332 26789999999999 88874321
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHH
Q 008070 460 AVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGT 538 (579)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~ 538 (579)
...+........+.........+... .....+.+.............+.+++++|+++.++......+|..+++
T Consensus 86 -----~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~ 160 (491)
T PRK11010 86 -----ATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSG 160 (491)
T ss_pred -----HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111222333333 333333333322233333344556779999999999999999999999
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 539 AATGYILQ-RGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 539 ~l~g~l~~-~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.+.+++.+ ..||+..|++.+++.++..+..+..
T Consensus 161 ~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~ 194 (491)
T PRK11010 161 GLALWLADRYLGWQGMYWLMAALLIPCIIATLLA 194 (491)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 4799999999888877776655443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=107.32 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=100.6
Q ss_pred HHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCH--HHHHHHHHHHHhhhhc-hhhHHHHHHhcccCcC
Q 008070 217 LLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL--PFLLIMRAFMGIGEGV-AMPAMNNMLSKWIPVS 293 (579)
Q Consensus 217 ~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~--~~ll~~r~l~Gig~g~-~~~~~~~~i~~~~~~~ 293 (579)
+...++.++.|+++||+|||++++.+.++.+++.++++.....+. ...+...++.+++.+. ..+....+++|.+|++
T Consensus 317 ~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 317 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 344556689999999999999999999999988877665421111 1233334444444443 2367789999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHh------hcccCcchHHHHhhHHHHHHHHHHHhhhcCCCC
Q 008070 294 ERSRSLAFVYSGMYLGSVTGLAVSPIL------IQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK 353 (579)
Q Consensus 294 ~r~~~~g~~~~~~~lG~~lgp~i~~~l------~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~ 353 (579)
+|+.++|+......+|.++++.+.+.+ .+.++|++.|++.++++++.+++.+++.||+++
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999999999999999998886665543 457899999999888877777766666665543
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-05 Score=82.77 Aligned_cols=228 Identities=8% Similarity=0.025 Sum_probs=142.1
Q ss_pred hhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhh----hcc-------------------------CHHHHHHHHHHHHh
Q 008070 223 RIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA----ARI-------------------------GLPFLLIMRAFMGI 273 (579)
Q Consensus 223 ~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a----~~~-------------------------~~~~ll~~r~l~Gi 273 (579)
.++.+++++|++|++++-+....+.+..+++++. .+. +.|...+..+...+
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999999888777777776666554 100 12333344455555
Q ss_pred hhhchhh-HHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cCcc----hHHHHhhHHHHHH
Q 008070 274 GEGVAMP-AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------FGWP----SVFYSFGSLGSIW 340 (579)
Q Consensus 274 g~g~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~--------~gwr----~~f~i~~~~~li~ 340 (579)
-...... ...+++.|.++.+|-.|..++...+.++|.++++.+..++.+. -.|. +.+.+.++.+++.
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~ 220 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI 220 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH
Confidence 5555555 7788999999999999999999999999999999998887631 1232 2333333333333
Q ss_pred HHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008070 341 FALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK 420 (579)
Q Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g 420 (579)
..+...+.+.. ..++.....++ ..+..+++......++.++++|.++.+++...++......+....-..+.+.+-
T Consensus 221 ~~~~~~l~~~~-~~~~~~~~~~~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p 296 (472)
T TIGR00769 221 ILLYWWVNRNV-LTDPRSYNPAL---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP 296 (472)
T ss_pred HHHHHHHHhcc-cCCccccchhh---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33333332222 11111001110 001111122234578889999999999888888888777777655566666443
Q ss_pred CChhh----hhHHhHHHHHHHHHHHHHHHHHhhhhhccC
Q 008070 421 FNLTE----SGLFCVLPWLTMAVFANMGGWIADTLVSKG 455 (579)
Q Consensus 421 ~s~~~----~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~ 455 (579)
++.+ .|.+....++..++..++.+++.+|+|-+.
T Consensus 297 -~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~ 334 (472)
T TIGR00769 297 -SPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLT 334 (472)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3322 334444455555566667788989888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=86.34 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh
Q 008070 430 CVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509 (579)
Q Consensus 430 ~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (579)
.....++.+++.++.|++.||+++|+....+. ............ ..+.+.........+.+...........
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGL-------FIFVLSTAMFAL-SSNITVLIIARFLQGFGAAFALVAGAAL 75 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHH-------HHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556788889999999999999997544321 111111111111 1222222222233333333333333333
Q ss_pred hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 510 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 510 ~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
..+..++++++++.++.+....++..+++.+.+.+.+..+|+..+.+.+++.+++.+....+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4555677899999999999999999999999999999999999998888877777666655543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=97.94 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+..+.+.++...+........+|.+ ++.+|.++.+.+++.....++..++.++.|++.||+|+|+.+..+. .+..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~--~~~~~ 103 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYAL 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHH
Confidence 44556666677777777777788887 5569999999999999999999999999999999999997655432 11111
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 469 GFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
+.++ .......++....++..++.+...+...+.......+.++ ++++..+++.+....+|..+++.+++.+.
T Consensus 104 ~~~l----~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 104 GAAL----FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHH----HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1001122333333333333333333333333333334455 44455789999999999999999887654
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-08 Score=106.12 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=103.5
Q ss_pred hhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 008070 418 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 497 (579)
Q Consensus 418 ~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (579)
+++++..+.|++.+...++.+++.++.|++.||+|+|+.+..+. .+..++.++ ............++.-++.+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~--~~~~~~~~~----~~~~~~~~~~~l~~~r~~~G~ 143 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGM--FLSSVISIV----IPWAAGGGIALVVFCRVIQGL 143 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHH--HHHHHHHHH----HHHHHHcCchHHHHHHHHHHH
Confidence 47899999999999999999999999999999999998654332 111111111 100111112223333333444
Q ss_pred hhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 498 GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+.....+.......+..++++|++++|+.+....+|.++++++.+.+.+. .||+..|++.+++.++..++++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 144 AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence 43333344444455567779999999999999999999999999999998 5999999998888777666555543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-08 Score=99.85 Aligned_cols=149 Identities=19% Similarity=0.231 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT 485 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (579)
.+...+|.+.++ +|++..+.+++.+...++..++.++.|++.||+|+|+.+..+. .....+.... ...+.
T Consensus 18 ~~~~~lp~l~~~-~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-------~~~~~~~~~~--~~~~~ 87 (355)
T TIGR00896 18 SVGPLLPQIRSA-LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGL-------LLIAAGILIR--SAPGT 87 (355)
T ss_pred cCcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHH-------HHHHHHHHHH--HhccH
Confidence 345567777666 8999999999999999999999999999999999997654332 1111111111 11222
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHH
Q 008070 486 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG--SWDDVFKVAVVLYII 563 (579)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~--g~~~~~~~~~~~~~l 563 (579)
..+.+..+..+.+. +...........+..++++++++|+.+....+|..+++.+.+.+.+.. +|+..|.+.+++.++
T Consensus 88 ~~l~~~~~~~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 88 ALLFAGTALIGVGI-AIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHHHHHHHHHHH-HHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 22222222223222 222222333344455678999999999999999999999999998764 388888776665544
Q ss_pred HH
Q 008070 564 GT 565 (579)
Q Consensus 564 ~~ 565 (579)
..
T Consensus 167 ~~ 168 (355)
T TIGR00896 167 AL 168 (355)
T ss_pred HH
Confidence 43
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=113.34 Aligned_cols=159 Identities=11% Similarity=0.068 Sum_probs=100.8
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--hhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHH
Q 008070 384 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNL--TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAV 461 (579)
Q Consensus 384 l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~--~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~ 461 (579)
.++++.++.+++..++..+........+..++...++.+. ...+++.++..++.+++.++.|+++||+|||+++..+.
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 4667777777777777666665555555555544455543 34677788888999999999999999999997655332
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008070 462 RKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
. +..+...+........+.+.+++..++.+.+.....+.......+.+++++|++++|+......+|.++|+.++
T Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~ 159 (1146)
T PRK08633 85 L-----FEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALF 159 (1146)
T ss_pred H-----HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1 11111111111111122222333333333333333333333455557789999999999999999999999999
Q ss_pred HHHHhc
Q 008070 542 GYILQR 547 (579)
Q Consensus 542 g~l~~~ 547 (579)
+++.+.
T Consensus 160 ~~l~~~ 165 (1146)
T PRK08633 160 SFLFES 165 (1146)
T ss_pred HHHHHh
Confidence 999876
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-08 Score=99.87 Aligned_cols=181 Identities=19% Similarity=0.119 Sum_probs=112.2
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHH
Q 008070 385 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKI 464 (579)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~ 464 (579)
+|++.+|.+....+++++.+.....++|.++++..|++.+++|.++++..+..++.+++.|.+.||++.||-++...
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i--- 80 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI--- 80 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH---
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH---
Confidence 47888999999999999999999999999999888999999999999999999999999999999999887544211
Q ss_pred HHHHHHHH-HHHHHHH---hhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 465 MQSIGFLG-PAFFLTQ---LSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 465 ~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l 540 (579)
.+..+. ..+.... ....+.+...++.............+..-++.+. -.+..+.-+|=....+++|.+++..+
T Consensus 81 --~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er-~sr~~~feYG~~R~wGSig~ai~s~~ 157 (412)
T PF01306_consen 81 --AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAER-VSRRNGFEYGRARMWGSIGFAIASLL 157 (412)
T ss_dssp --HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHH-HHHHHSS-HHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH-HHHHhcCCcchHHHHhhHHHHHHHHH
Confidence 111111 1111111 1111111111111111111111122222223322 22445666777788899999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 541 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 541 ~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+|.+.+. +....|++..+..++..++.++.+
T Consensus 158 ~G~L~~i-~p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 158 AGILFNI-NPNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred hheeeee-CccHHHHHHHHHHHHHHHHHHHcC
Confidence 9999985 456667765555554444444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=98.10 Aligned_cols=179 Identities=13% Similarity=0.109 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhh----hhhccCcchHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD----TLVSKGLSITAVRKIM 465 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~d----r~g~~~~~~~~~~~~~ 465 (579)
+..+....+...+++.....+++.|+++ +|.++...+++..+..+.+++..++.|+++| |+|||+.++...
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g---- 80 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG---- 80 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH----
Confidence 4445555566667777777888888876 8999999999999999999999999999999 599998654321
Q ss_pred HHHHHHHHHHHHHHhhcc------------chh---HHHHHHHHHHhhhhhhhhhhhhh-hccccCCCch--hHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSHV------------RTP---AMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYA--GVLLGLSN 527 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--g~~~g~~~ 527 (579)
.......+.++..... ... +..++.+.+..+..........+ ..+.+++++| +.++++.+
T Consensus 81 --~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~ 158 (477)
T TIGR01301 81 --AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFS 158 (477)
T ss_pred --HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH
Confidence 1111111111111000 001 12222222222233333333334 4445666544 68999999
Q ss_pred HHHHHHHHHHHHHHHHH--Hhc-------------CChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 528 TAGVLAGVFGTAATGYI--LQR-------------GSWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 528 ~~~~lg~~ig~~l~g~l--~~~-------------~g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
.+..+|+.+|+.+++.. .+. .+++..|++.+++.+++.++..+..+++
T Consensus 159 ~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 159 FFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 99999999999999875 221 1678889998888888877776665543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=97.07 Aligned_cols=157 Identities=12% Similarity=0.057 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-----hccCcchHHHHHHHHHHHHHHHH-HHHHH
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-----VSKGLSITAVRKIMQSIGFLGPA-FFLTQ 479 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 479 (579)
.....+|.++++ .|++..+.+++... .+...+ .++.|.++||+ ||||.+.. ......... ..+..
T Consensus 6 ~~~~~~~~~~~~-~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~------~~~~~~~~~~~~l~~ 76 (356)
T TIGR00901 6 LVGNTLPYWLRS-KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLV------LTQVLLLSLLLILSF 76 (356)
T ss_pred hHHhHHHHHHHH-cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHH------HHHHHHHHHHHHHHc
Confidence 345567888887 79999999998644 444444 88999999998 77764321 111111111 11111
Q ss_pred hhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------h
Q 008070 480 LSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS--------W 550 (579)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g--------~ 550 (579)
.......+.+.....+.........+.... ..+..++++|+.+.|+......+|..+++.+.+.+.+..| |
T Consensus 77 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w 156 (356)
T TIGR00901 77 LVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW 156 (356)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 111122222222222222222323333333 4555778999999999999999999999999999998877 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 008070 551 DDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 551 ~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+..|++.+++.++..++.++.
T Consensus 157 r~~f~i~ai~~l~~~~~~~~~ 177 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTLFL 177 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999888777766554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-08 Score=105.32 Aligned_cols=127 Identities=13% Similarity=0.056 Sum_probs=102.2
Q ss_pred hhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHH
Q 008070 222 DRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF 301 (579)
Q Consensus 222 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~ 301 (579)
+.++.+++.||+|||+++.++.++.+++.++..+.++...+..++..++.+++.+...+....+..|.+|++.|+.++|+
T Consensus 371 ~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 450 (505)
T TIGR00898 371 AKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGV 450 (505)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhH
Confidence 44778899999999999999999999998888877632235556666777777777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 302 VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 302 ~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
......+|.+++|.+.+ + ...++..++++.+++.++..++.++ .||+
T Consensus 451 ~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-lpet 497 (505)
T TIGR00898 451 CSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF-LPET 497 (505)
T ss_pred HHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc-CcCC
Confidence 99999999999999998 4 3456777888888777776665554 3443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-08 Score=101.17 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=107.9
Q ss_pred HHHhhhhhhhhhhhhhcCCc--HHHHHHHHHHHHHHHHHHh--------hhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 217 LLCNMDRIVGGIWADKFGGK--PVLGFGVIWWSVATVLTPV--------AARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 217 ~~~~l~~~~~G~l~Dr~Grr--~~l~~~~~~~~~~~ll~~~--------a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
+...++.+++|++.||+|.| ++++++++++.+..+...+ .. +-+.+.+..++.|+..|..++..-++.
T Consensus 328 i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~--~~~~f~~~a~~~G~~~G~~qs~sRs~~ 405 (477)
T PF11700_consen 328 IVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLK--SPWEFWVLAVLIGLFMGGIQSASRSLF 405 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcc--cHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34455568999999999999 8888888877555554443 34 678899999999999999999999999
Q ss_pred hcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHHHHHHHHHhh
Q 008070 287 SKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~li~~~l~~~~ 347 (579)
+++.|+++.+..+|++....-....+||++.+.+.+..| -|+.+....++.++.+++.++.
T Consensus 406 ~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 406 SRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998876 8888887777766666555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-07 Score=92.72 Aligned_cols=319 Identities=17% Similarity=0.144 Sum_probs=164.7
Q ss_pred hhhhhhhhh----cCCcHH-HHHHHHHHHHHHHHHHhhhccCH---------------HHHHHHHHHHHhhhhchhhHHH
Q 008070 224 IVGGIWADK----FGGKPV-LGFGVIWWSVATVLTPVAARIGL---------------PFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 224 ~~~G~l~Dr----~Grr~~-l~~~~~~~~~~~ll~~~a~~~~~---------------~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
|+.|..+|| |||||. +..+.+...++.++.+++.++.. ..+++.--+.=++.-....++-
T Consensus 85 P~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r 164 (498)
T KOG0637|consen 85 PLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR 164 (498)
T ss_pred ccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH
Confidence 888999995 788766 55556666777777777652211 1223333344455557778889
Q ss_pred HHHhcccCcCchhH-HHHHHHHHHHHHHHHHHHHHHHhhcccCcchH--HHHhhHHHHHHHHH------HH-hhhcCC--
Q 008070 284 NMLSKWIPVSERSR-SLAFVYSGMYLGSVTGLAVSPILIQKFGWPSV--FYSFGSLGSIWFAL------WL-KKAYSS-- 351 (579)
Q Consensus 284 ~~i~~~~~~~~r~~-~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~--f~i~~~~~li~~~l------~~-~~~~~~-- 351 (579)
+++.|...++++.+ +++.+..+.++|.++|..+++++ +|+-. |.....+.+.+..+ .. +...++
T Consensus 165 a~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~----~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~ 240 (498)
T KOG0637|consen 165 ALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL----GLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSE 240 (498)
T ss_pred HHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc----CceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheeccc
Confidence 99999998776666 99999999999999999888743 33322 22111111111111 00 000000
Q ss_pred ----CCCChhhcHHHHhhhhcCCcccccccchhHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChhh
Q 008070 352 ----PKEDPELRAEEKRHILGGSISKEAVSVIPWKLI-LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLTE 425 (579)
Q Consensus 352 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~ 425 (579)
+++++...+.... +....+.+.....+..+ ...+.++.+++...+.+.+.+.+..|...++.+ +++-++..
T Consensus 241 ~l~~~~~~~~s~~~~~~---~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a 317 (498)
T KOG0637|consen 241 SLWYPQEKPLSPKGTTA---RSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKA 317 (498)
T ss_pred ccccccccCCCCCcccc---cccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCC
Confidence 0011000000000 00000000000011112 235678889999999999988888888777644 34433321
Q ss_pred ----------------hhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-c------
Q 008070 426 ----------------SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-H------ 482 (579)
Q Consensus 426 ----------------~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 482 (579)
-.+-+.+..+...+.+....++.+|+|.|+.+..+.....+..++.+......... +
T Consensus 318 ~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~ 397 (498)
T KOG0637|consen 318 DENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGI 397 (498)
T ss_pred CcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcce
Confidence 12334566677777888899999999966655544322222222222111110000 0
Q ss_pred -----cchhHHHHHHHHHHhhhhhhhhhhhhhhcc-ccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 483 -----VRTPAMAVLCMACSQGSDAFSQSGLYSNHQ-DIGP--RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 483 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
...++.++..+.....-....+...+.... +..+ ..+|...|+.+....+..++.....|.+.+..|
T Consensus 398 ~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G 472 (498)
T KOG0637|consen 398 LSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG 472 (498)
T ss_pred eecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence 000111111111111111111111111111 1112 334778888888888888888888888888744
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-07 Score=94.88 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHH--hHHHHHHHHHHHHHH-HHHhhhhhccCcchHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLF--CVLPWLTMAVFANMG-GWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~--~~~~~~~~~ig~~~~-g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
+..+...++.....+.....++|.|+++ .|.+..+.|++ .+...+...+..++. ++..||+|+|+..+... ..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~---~~ 78 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM---QC 78 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH---HH
Confidence 3445566677777778888899999998 59999999997 355677777777766 55788999887643221 00
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
........+..... ......+.........+......+.... ..+..+++.++...+.......+|..+++...+++.
T Consensus 79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 79 LVSACLASLALVGP-DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred HHHHHHHHHHcCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111111 1111112222222222222222222222 344455566677777777777889999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 546 QRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 546 ~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+..||+..|++.+++.++..+..+...+
T Consensus 158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 158 GKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999888776666555533
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.6e-09 Score=104.82 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
.+..+++...+...--+.+...++-.-. .++.++...|++.....+..++++++.|+++||+.|++++..+..... +
T Consensus 34 ~l~il~~vnlmny~Dr~~iagv~~~v~~-~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~--~ 110 (493)
T KOG1330|consen 34 TLVILCLVNLMNYADRYTIAGVLKEVQT-YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT--L 110 (493)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHH-hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH--H
Confidence 3444555555555555555554444433 489999999999999999999999999999999999988766542222 2
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 469 GFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
+.++. ......|.++++=.+.+..-....+.... +...++.++|+++++++++...+|..+|-..++.+.+.
T Consensus 111 Av~~~-------~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~ 183 (493)
T KOG1330|consen 111 AVFAS-------GFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL 183 (493)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence 22222 22245555555544444444444444444 45556668999999999999999999999999998888
Q ss_pred CC-hHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 548 GS-WDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 548 ~g-~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.+ |+++|...+++.++..++.+++.++
T Consensus 184 ~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 184 TFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred ccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 55 9999999999999888877776544
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-06 Score=84.56 Aligned_cols=313 Identities=13% Similarity=0.011 Sum_probs=176.0
Q ss_pred hhhhhhhh-----hcCCcHH-HHHHHHHHHHHHHHHHhhh---------ccCHHHHHHHHHHHHhhhhchhhHHHHHHhc
Q 008070 224 IVGGIWAD-----KFGGKPV-LGFGVIWWSVATVLTPVAA---------RIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 288 (579)
Q Consensus 224 ~~~G~l~D-----r~Grr~~-l~~~~~~~~~~~ll~~~a~---------~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~ 288 (579)
++|.++.| |+||||. ++-+..+.+..+++.+... ..+...+...-++.-+..+....+...+.-.
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt 160 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT 160 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 78999999 9999875 3333444444444333221 1133344455677778888889999999999
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccCcc---------hHHHHhhHHHHHHHHHHHhhhcCCC
Q 008070 289 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-------KFGWP---------SVFYSFGSLGSIWFALWLKKAYSSP 352 (579)
Q Consensus 289 ~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-------~~gwr---------~~f~i~~~~~li~~~l~~~~~~~~~ 352 (579)
+..+++.|.+......+...|..++..+--.+-. ..+|. ..++..+.+.++.-.+..+..+|.+
T Consensus 161 mLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~ 240 (510)
T KOG3574|consen 161 MLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEND 240 (510)
T ss_pred hcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999988888888777777777654433322 11232 2234445555555555555544433
Q ss_pred CCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHH
Q 008070 353 KEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVL 432 (579)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~ 432 (579)
.+..++.+.... ..-.-++++++-|.+..++......-.++.+-....+.-+.| .|++.++.+++...
T Consensus 241 ~~~~~e~~~~i~-----------~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle-~Gv~ke~Lal~~v~ 308 (510)
T KOG3574|consen 241 ESVDEELELGIH-----------ESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE-HGVPKEELALIAVP 308 (510)
T ss_pred hhhhhhhhcCHH-----------HHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH-cCCChhHheeeeee
Confidence 321110000000 011235667777888888888787888888888888888888 69999998876544
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCcchH--HHH-HHHHHHHHHHHHHHHHHhhc----cc--hhHHHHHHHHHHhhhhhhh
Q 008070 433 PWLTMAVFANMGGWIADTLVSKGLSIT--AVR-KIMQSIGFLGPAFFLTQLSH----VR--TPAMAVLCMACSQGSDAFS 503 (579)
Q Consensus 433 ~~~~~~ig~~~~g~l~dr~g~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~ 503 (579)
..-..++.....|++... .+++... +.. .+.......+.....-.... .. .+.+.+....+..++....
T Consensus 309 ~~plqI~l~~~~gk~ta~--~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~ 386 (510)
T KOG3574|consen 309 LVPLQIALPLYIGKWTAG--PRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSM 386 (510)
T ss_pred hhhHHHhhhhhheeecCC--CCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeechHHHHHHHHHHhhhHHHHH
Confidence 333444444444433321 2222111 110 01111111111111111111 00 1111121222333332222
Q ss_pred hh-hhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 008070 504 QS-GLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSW 550 (579)
Q Consensus 504 ~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~ 550 (579)
.. .+.-..+..+|..-|+.+.+.|+..++|+-.-..+..++.|..++
T Consensus 387 fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 387 FVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 22 333344556788999999999999999999999999999986543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=101.55 Aligned_cols=125 Identities=14% Similarity=0.224 Sum_probs=94.1
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHH--HHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccC
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVAT--VLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIP 291 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~--ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~ 291 (579)
...+...++.++.|+++||+|||+.+..+..+..+.. ++..+....+.+.+++..++.|++.+...+...+++.|.+|
T Consensus 263 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 342 (394)
T TIGR00883 263 LSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFP 342 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC
Confidence 3444555666899999999999998775555444333 22223221156667778888999988889999999999999
Q ss_pred cCchhHHHHHH-HHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHH
Q 008070 292 VSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGS 338 (579)
Q Consensus 292 ~~~r~~~~g~~-~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~l 338 (579)
+++|++++++. ..+..+|..++|.+++++.+..| |++.++..++..+
T Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 343 TEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred ccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99999999984 56667899999999999999888 8887776654443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=98.59 Aligned_cols=147 Identities=16% Similarity=0.098 Sum_probs=108.1
Q ss_pred hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHh
Q 008070 419 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQ 497 (579)
Q Consensus 419 ~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 497 (579)
.+-+..++|++++...+..++.+++.|.+.||+|+|-.+. +++..+......+...+.+...++. ..-+.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~---------~Gl~vmf~sTilFafg~sy~~l~vAR~LQgv 171 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMV---------AGLFVMFLSTILFAFGNSYPMLFVARSLQGV 171 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHH---------HHHHHHHHHHHHHHHcchhHHHHHHHHHhhh
Confidence 3456788999999999999999999999999999995544 3333333333333444444444443 33344
Q ss_pred hhhhhhhhhhhhhccccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 498 GSDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+........+....+.++. ++|++++|+...+..+|-.+||+++|.+++..|+...|+++++++++-..+.+++.+.
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence 4444444444445555555 4579999999999999999999999999999999999999999999888777666443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-07 Score=95.91 Aligned_cols=163 Identities=9% Similarity=0.045 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSH 482 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (579)
..+.+..+.+.. ++.+|++..+.+++..+... ..+..++.|++.||+|+|+++..+. .+..++.++.++..... .
T Consensus 42 ~~y~fsv~s~~L-~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~--ll~~iG~ll~ala~~~~-i 116 (591)
T PTZ00207 42 FMYAFNLISGAM-QARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSM--TVFCLGTLLFALTFQEV-I 116 (591)
T ss_pred HHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHHHhccc-c
Confidence 344555556654 55599999999988766333 3356667899999999997665443 22222222222110000 0
Q ss_pred cchhHHHHH-HHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008070 483 VRTPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 561 (579)
Q Consensus 483 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~ 561 (579)
....+.+.+ ..+.+.+.............+ ..|++||.+.|+......+|+++.+.+...+.. .++...|++.+++.
T Consensus 117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~-~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~ 194 (591)
T PTZ00207 117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLS-VFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA 194 (591)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 122333333 333333332233333333333 457899999999999999999875555555544 35778888888777
Q ss_pred HHHHHHHHHhh
Q 008070 562 IIGTLVWNLFA 572 (579)
Q Consensus 562 ~l~~~~~~~~~ 572 (579)
++..++++.+.
T Consensus 195 ~vv~ll~~~~v 205 (591)
T PTZ00207 195 LVVGILAIVFM 205 (591)
T ss_pred HHHHHHHHhhe
Confidence 76666555543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=99.26 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcc
Q 008070 210 LLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289 (579)
Q Consensus 210 ~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~ 289 (579)
.+.....+...++.+++++++||+|+|+++.++.++.+++.++..+.++ +.+.+++..++.|++.+...+...++++|.
T Consensus 261 ~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 261 YMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS-NLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344456677777899999999999999999999888888877766542 566777888889999998899999999988
Q ss_pred cC-------cCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 008070 290 IP-------VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWP 327 (579)
Q Consensus 290 ~~-------~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr 327 (579)
.+ ++++|.++|+.+....+|..+++.+.+++.+..||.
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 75 456799999999999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=102.43 Aligned_cols=160 Identities=12% Similarity=0.094 Sum_probs=107.8
Q ss_pred HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh--------
Q 008070 410 WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-------- 481 (579)
Q Consensus 410 ~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 481 (579)
.++.+ ++.++++..+.|++.+...++.+++.++.+++.||.+|++++..+. ++..++.++.++.-....
T Consensus 55 ~l~~i-ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~--ll~~lg~ll~alphf~~~~y~~~~~~ 131 (633)
T TIGR00805 55 SLTTI-ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC--AIMGLGSFLLSLPHFLSGRYSYSTTV 131 (633)
T ss_pred hchhh-hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH--HHHHHHHHHHhChHHhcCCccccccc
Confidence 34444 4559999999999999999999999999999999999999877654 333344333332211000
Q ss_pred ----------------c-----------------c--c-hhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHH
Q 008070 482 ----------------H-----------------V--R-TPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLG 524 (579)
Q Consensus 482 ----------------~-----------------~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 524 (579)
. . . .+..+ +.-++.+.+.....+.....+.+.+++++++.+.|
T Consensus 132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~ 211 (633)
T TIGR00805 132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG 211 (633)
T ss_pred cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence 0 0 0 12222 23334444444444444444555578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 525 LSNTAGVLAGVFGTAATGYILQRG----------------------SWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 525 ~~~~~~~lg~~ig~~l~g~l~~~~----------------------g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+.+....+|.++|+.++|++.+.+ +|+..|++.+++.++..+.++++.
T Consensus 212 i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p 281 (633)
T TIGR00805 212 ILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP 281 (633)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999988642 266678887777776665555543
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-06 Score=91.13 Aligned_cols=135 Identities=21% Similarity=0.288 Sum_probs=106.1
Q ss_pred HHHHHHHhhhhhhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHHhhhcc------CHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 213 FSAFLLCNMDRIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARI------GLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 213 ~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~~a~~~------~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
........+..+++|+++|+ +|+++.++++.++..++.++.++.... .....+++-.+.++|.|+.-+...+.
T Consensus 30 ~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf 109 (654)
T TIGR00926 30 HTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAF 109 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhh
Confidence 33444455666899999997 599999999999999999888775310 12335677788889999999999999
Q ss_pred HhcccCcC---chhHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CcchHHHHhhHHHHHHHHHHHhh
Q 008070 286 LSKWIPVS---ERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-------GWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 286 i~~~~~~~---~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-------gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
..|.++++ +|-..+.++..+.++|.++++++.+++.+.+ +|...|.+.+++.++.+++....
T Consensus 110 ~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g 181 (654)
T TIGR00926 110 GGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAG 181 (654)
T ss_pred hHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999754 3677889999999999999999999887443 69999999888887776665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=94.58 Aligned_cols=168 Identities=10% Similarity=0.029 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHH
Q 008070 395 ISHFCHNWGTFILLTWMPTYYNQV----LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF 470 (579)
Q Consensus 395 l~~~~~~~~~~~~~~~~p~~l~~~----~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 470 (579)
+..+....-...+....|.+-.+. ...+..+.+++.+...++.+++.++.|++.||+|||+.+..+. .+..++.
T Consensus 23 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~--~~~~v~~ 100 (502)
T TIGR00887 23 VGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL--IIMIIAT 100 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH--HHHHHHH
Confidence 333333333334444455443321 2345567788899999999999999999999999997654322 1111111
Q ss_pred HHHHHHHHHhhcc-c---hhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 471 LGPAFFLTQLSHV-R---TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 471 ~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
+........ . ...+.+.-++.+.+.+...+.......+..|++.||++.++.+....+|..+++.+...+..
T Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 101 ----VASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred ----HHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110 0 12233333344444444445555556677888999999999999999999999988776542
Q ss_pred -----------------------cCChHHHHHHHHHHHHHHHHHH
Q 008070 547 -----------------------RGSWDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 547 -----------------------~~g~~~~~~~~~~~~~l~~~~~ 568 (579)
..+|+..+.+.++..++..++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~ 221 (502)
T TIGR00887 177 GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFR 221 (502)
T ss_pred HhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHH
Confidence 1379999977766666554443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-06 Score=91.90 Aligned_cols=163 Identities=12% Similarity=0.086 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CChhh---hhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 396 SHFCHNWGTFILLTWMPTYYNQVLK---FNLTE---SGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~l~~~~g---~s~~~---~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
..++...-...+....| ++.++++ .+..+ .+..+....++..++.++.|+++||+|||+.+..+. ....++
T Consensus 30 ~~~~~~~d~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~--~~~~~~ 106 (432)
T PRK10406 30 GNLVEWFDFYVYSFCSL-YFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISV--CMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH--HHHHHH
Confidence 34444444444433444 4555453 44443 334445555666699999999999999997654322 111111
Q ss_pred HHHHHHHHHHhhcc-----chh-HHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 470 FLGPAFFLTQLSHV-----RTP-AMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGY 543 (579)
Q Consensus 470 ~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~ 543 (579)
.+..++ .... ..+ .+.+.-++.+.+.+...+.......+..|+++||.+.++.......|.++++.+...
T Consensus 107 ~~~~~~----~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 182 (432)
T PRK10406 107 SLVIAC----LPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV 182 (432)
T ss_pred HHHHhh----cCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 0100 011 122222334444444444444455666788999999998888777787777776555
Q ss_pred HH--------hcCChHHHHHHHHHHHHHHH
Q 008070 544 IL--------QRGSWDDVFKVAVVLYIIGT 565 (579)
Q Consensus 544 l~--------~~~g~~~~~~~~~~~~~l~~ 565 (579)
+. +..||+..|.+.++..++..
T Consensus 183 ~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~ 212 (432)
T PRK10406 183 LQQTLEDAELREWGWRIPFALGAVLAVVAL 212 (432)
T ss_pred HHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence 43 25799999998777665543
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-08 Score=94.96 Aligned_cols=122 Identities=13% Similarity=0.198 Sum_probs=96.0
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCH--HHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGL--PFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF 301 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~--~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~ 301 (579)
++.+++.||+|||+.+....+++++..++...+.+.|. .++.++|++. ++.+.+.+.|..|.+|..-|+...|.
T Consensus 399 LIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVyPTavRatgvGt 474 (528)
T KOG0253|consen 399 LITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVYPTAVRATGVGT 474 (528)
T ss_pred hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCcccchhhhhcchhh
Confidence 88999999999999999999999999998877764333 2234455544 44566777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 302 VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 302 ~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
...+..+|+++.|+++ +....+-..+..+.+.+.++..+...+++-|+
T Consensus 475 cSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 475 CSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999 43344555666777777777777777765544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-06 Score=90.48 Aligned_cols=165 Identities=10% Similarity=0.030 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChhhhhHHh-----HHHHHHHHHHHHHHHHHhhhhhccCcchHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVL--KFNLTESGLFC-----VLPWLTMAVFANMGGWIADTLVSKGLSITAVR 462 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~--g~s~~~~g~~~-----~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~ 462 (579)
++...+..++-+.-...+....|.+..+.+ +.++.. +.+. .+..++..++.++.|+++||+|||+.+..+.
T Consensus 24 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~- 101 (438)
T PRK09952 24 ALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTV- 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHH-
Confidence 334444444444444444445555555544 566653 4432 2334556788889999999999997554321
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhH---------HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHH
Q 008070 463 KIMQSIGFLGPAFFLTQLSHVRTPA---------MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLA 533 (579)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 533 (579)
++.++........+... +.+.-++.+.+.+...+.......+..|+++||...+..+....+|
T Consensus 102 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 102 --------WMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred --------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 11111111111112211 2222223344443444444444556678899999999998888888
Q ss_pred HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHH
Q 008070 534 GVFGTAATGYILQ--------RGSWDDVFKVAVVLYIIG 564 (579)
Q Consensus 534 ~~ig~~l~g~l~~--------~~g~~~~~~~~~~~~~l~ 564 (579)
..+++.+.+.+.. ..||+..|++.++..++.
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~ 212 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA 212 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH
Confidence 8888877776653 479999998877665443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=93.26 Aligned_cols=184 Identities=13% Similarity=0.119 Sum_probs=125.6
Q ss_pred Hhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-hccCcc
Q 008070 384 ILS-KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK----FNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLS 457 (579)
Q Consensus 384 l~~-~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g----~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~ 457 (579)
.++ .+.++.+...-+.--+++|++...+..|+...++ ++.+++.-++..+....-+..+++||++||+ |+|+.+
T Consensus 16 ~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI 95 (498)
T COG3104 16 FFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI 95 (498)
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 344 3457777888888889999999999999988888 9999888888777777777888999999996 777654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhhhhhhhhhhccccCC--CchhHHHHHHHHHHHHHH
Q 008070 458 ITAVRKIMQSIGFLGPAFFLTQLSH-VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP--RYAGVLLGLSNTAGVLAG 534 (579)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~ 534 (579)
..+. .+...+...+.... .....+.+....+..+.+.+=+.......+..++ .+|-..+++..+..++|+
T Consensus 96 ~lGa-------il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 96 VLGA-------ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHH-------HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 4332 22222222222221 1122222222223333222222222222222333 236778888889999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 535 VFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 535 ~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.++|.+.+++.+.+||...|...++-+.++.+.+++.++.
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999988877653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-06 Score=91.28 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=105.3
Q ss_pred hhchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHH
Q 008070 385 LSKAPVWALIISHFCHNWGTF----ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITA 460 (579)
Q Consensus 385 ~~~~~~~~~~l~~~~~~~~~~----~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~ 460 (579)
+++++++..+....+.....+ .....++....+ +|-+ ....++.....++..+..++.|+++|.+|||...+.+
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~d-iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g 114 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINAD-IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIG 114 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHh-cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHH
Confidence 455666555444443333222 223345555555 6744 5667777788889999999999999999999655433
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 461 VRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l 540 (579)
. .+..++.++ ....++...++....+.+...+..........+.+|.+.|+...++.....-....+++.+
T Consensus 115 ~--~l~vvG~Iv-------~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~i 185 (599)
T PF06609_consen 115 S--LLGVVGSIV-------CATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLI 185 (599)
T ss_pred H--HHHHhHHHH-------hhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHH
Confidence 2 222222221 2222333333333222222223333333345666777889888777766555556677888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 541 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 541 ~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
...+....+|++.|++.+++..+++++.+++
T Consensus 186 a~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 186 AQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 7777777899999999988877776655444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-06 Score=89.91 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHh-HHH-----HHHHHHHHHHHHHHhhhhhccCcchHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFC-VLP-----WLTMAVFANMGGWIADTLVSKGLSITAVRK 463 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~-~~~-----~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~ 463 (579)
....++..++.+.-...+....|.+.++ ++.++.+.+.+. +.. .+...++.++.|++.||+|||+.+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~-- 93 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKT-FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL-- 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH--
Confidence 4455666666666677777777876666 787776654332 221 2223467889999999999998655432
Q ss_pred HHHHHHHHHHHHHHHHhhccchhH---------HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFFLTQLSHVRTPA---------MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAG 534 (579)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 534 (579)
....++.+. ... .+... +.+.-++.+.+.....+.......+..|+++|++++++.....++|.
T Consensus 94 ~~~~~~~~l-----~~~--~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~ 166 (434)
T PRK15075 94 SIMASGTLL-----IAF--VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV 166 (434)
T ss_pred HHHHHHHHH-----HHh--CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence 111111111 111 11111 12222223333322233333345566788999999999999888888
Q ss_pred HHHHHHHHHHH--------hcCChHHHHHHHHH
Q 008070 535 VFGTAATGYIL--------QRGSWDDVFKVAVV 559 (579)
Q Consensus 535 ~ig~~l~g~l~--------~~~g~~~~~~~~~~ 559 (579)
.+++.+++.+. +..||+..|++..+
T Consensus 167 ~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 167 VFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88888777663 46799999987543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.3e-07 Score=85.85 Aligned_cols=333 Identities=12% Similarity=0.098 Sum_probs=201.8
Q ss_pred hhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHH
Q 008070 228 IWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMY 307 (579)
Q Consensus 228 ~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~ 307 (579)
.+.|..-.|+++++-.+...+..++.-+.+ +.+.+=+.-++.|...+ ...+.++++-..++++++.++.+......-
T Consensus 64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g~--sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L 140 (433)
T KOG3810|consen 64 LLTDYLRYKPVVVLQALSGVPVWIMLVFGP--SVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFL 140 (433)
T ss_pred HHhhhhhcceeeeeeccchhHHHHHHHhcC--CchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHH
Confidence 368888899998888777777777778888 88888888899898876 567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCcc--hHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhhcC-Ccccccc--------
Q 008070 308 LGSVTGLAVSPILIQKFGWP--SVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGG-SISKEAV-------- 376 (579)
Q Consensus 308 lG~~lgp~i~~~l~~~~gwr--~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------- 376 (579)
.|..+|..++..++..-.+. ..=.+.-....+..++.+++ |..++..-....+++....+. +...+..
T Consensus 141 ~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fL-P~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~ 219 (433)
T KOG3810|consen 141 VGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFL-PRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGA 219 (433)
T ss_pred HHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhC-CCCchhhhhhcccccceeccchhcCccchhhHHHHHH
Confidence 99999999999888643332 22222222223333334443 333321111111110000000 0000000
Q ss_pred ---cchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhh
Q 008070 377 ---SVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVL-KFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 452 (579)
Q Consensus 377 ---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g 452 (579)
-...+.+..++|.+....+-..+...+++-+..|......+.- .-....-|..-++..+.++++.+..|++.-.+.
T Consensus 220 ~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~ 299 (433)
T KOG3810|consen 220 FVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWN 299 (433)
T ss_pred HHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccc
Confidence 0123455667888888788888888888888877777766642 111223455666777778888888888866665
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhh-hhhhhhhccccCCCchhHHHHHHHHHHH
Q 008070 453 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS-QSGLYSNHQDIGPRYAGVLLGLSNTAGV 531 (579)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 531 (579)
|.+- .++.++.+.-+..+.........|+..+...+.-....+. ..+..........+.-|-.+|+.+++.-
T Consensus 300 r~g~-------~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl 372 (433)
T KOG3810|consen 300 RWGD-------LLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVAL 372 (433)
T ss_pred hhhH-------HHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHH
Confidence 5532 3333334443444444445555665555554443333333 3333335556677888999998777655
Q ss_pred HHHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 532 LAGVFGTAATGYILQRGS-----------WDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 532 lg~~ig~~l~g~l~~~~g-----------~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+-..+-.. ...|.-| |..-|++.+++.+++..+.....++
T Consensus 373 ~lQsilT~---iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 373 ILQSILTL---IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred HHHHhheE---EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 54443332 2334211 4456778888888886665555443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.3e-07 Score=93.89 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=109.8
Q ss_pred hhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Q 008070 418 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-HVRTPAMAVLCMACS 496 (579)
Q Consensus 418 ~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 496 (579)
.+.++..+-+++++....+.+++.+..|+++||+|.|+++..+. .+.....++.... ....+.++++=++.|
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~-------~~sa~~t~l~P~aa~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISG-------LISALLTLLTPLAASIGFYLLLVLRFLQG 139 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHH-------HHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence 57889999999999999999999999999999999997654322 1111111111111 122222233333444
Q ss_pred hhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 497 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
.+.+...+.......+-.|+++|++..++.....++|.+++-+++|++.+. .||+..|++.+++.++..++++.+.++
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444444455668889999999999999999999999999999999 999999999999999888888777654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-07 Score=90.86 Aligned_cols=132 Identities=20% Similarity=0.264 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhccc
Q 008070 211 LCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI 290 (579)
Q Consensus 211 l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~ 290 (579)
+.....+...++.+++|+|.||+|.|+++.+++++..+.++..-+.. .-..+.++..+.|+..|..+...-++.++.+
T Consensus 293 ~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv 370 (438)
T COG2270 293 IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--GELDFWILGLLVGTSLGGAQASSRSYLARLV 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHhcchHHHHHHHHHHHhC
Confidence 33344456667779999999999999999999999998888777766 5667888889999999999999999999999
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHHHHHHHH
Q 008070 291 PVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALW 344 (579)
Q Consensus 291 ~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~li~~~l~ 344 (579)
|+++-++.+|+++.....+..+||.+.+.+.+..| -|..+....++.++.+++.
T Consensus 371 p~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 371 PKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred CCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence 99999999999999999999999999999887654 5666655554444433333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=91.90 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=93.4
Q ss_pred HHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcC--
Q 008070 216 FLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS-- 293 (579)
Q Consensus 216 ~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~-- 293 (579)
.+...++.++++++.||+|+|+++.++.++..++.++..+.+..+++.+++..++.|+|.+...+...++++|..+.+
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~ 353 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY 353 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 445666778999999999999999999999888888777755335677777788999999999999999999988754
Q ss_pred -----chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 008070 294 -----ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGW 326 (579)
Q Consensus 294 -----~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gw 326 (579)
++|..+++.+....+|..+|+.+.+.+.+..|+
T Consensus 354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999988776665
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-07 Score=88.56 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=84.4
Q ss_pred ChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Q 008070 422 NLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDA 501 (579)
Q Consensus 422 s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (579)
+....|++.+.+.+...+.++.+|.++||+|||..+ .++++..++..+......+...+++.=++++..-+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvl---------l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg 136 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVL---------LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG 136 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Confidence 446688999999999999999999999999999543 33334444444444444444333333344454444
Q ss_pred hhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 502 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
..........+..++++|+.+++.+.+...+|.++||.++|++..
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 445555555666777999999999999999999999999999988
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-05 Score=76.06 Aligned_cols=134 Identities=29% Similarity=0.561 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
+...+......+...+..++.|.+.||+|||+.++.+.....++.+++++....+.+.+++.|+++|++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566666667777777799999999999998888888776666677777762137889999999999999999999999
Q ss_pred HhcccCc-CchhHHHHHHHH-HHHHHHHHHHHHHHHhhcc--cCcchHHHHhhHHHHH
Q 008070 286 LSKWIPV-SERSRSLAFVYS-GMYLGSVTGLAVSPILIQK--FGWPSVFYSFGSLGSI 339 (579)
Q Consensus 286 i~~~~~~-~~r~~~~g~~~~-~~~lG~~lgp~i~~~l~~~--~gwr~~f~i~~~~~li 339 (579)
+.+++|+ ++|+...+.... ...+|.++++.+++.+... .+|++.|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999987 678999999888 5888999999888777654 6799876666555443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-06 Score=77.46 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=162.9
Q ss_pred HHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCc
Q 008070 215 AFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSE 294 (579)
Q Consensus 215 ~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~ 294 (579)
++....+...+.|.++|+-|||+..+.-.+.+.++++ .-.++ .+-.++++|++.|++.+..+.+..++...-- .++
T Consensus 81 GfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSp--qYkVLmVGR~LGGiaTsLLFSaFEsWliaEH-nek 156 (454)
T KOG4332|consen 81 GFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSP--QYKVLMVGRVLGGIATSLLFSAFESWLIAEH-NEK 156 (454)
T ss_pred ccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCC--ceEEEeehhhhhhHHHHHHHHHHHHHHHHHh-hhc
Confidence 3334445557889999999999976655555544443 34455 6778999999999999999888887654433 134
Q ss_pred hhHHHHHHH--------HHHHHHHHHHHHHHHHhhccc--CcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh
Q 008070 295 RSRSLAFVY--------SGMYLGSVTGLAVSPILIQKF--GWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR 364 (579)
Q Consensus 295 r~~~~g~~~--------~~~~lG~~lgp~i~~~l~~~~--gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~ 364 (579)
|+.-.-+.. .+..+-.+++.+.+-.+.+.+ |--.+|-..+.+..+...+.+.-..|.-.++.+.++-...
T Consensus 157 r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~kdlltq 236 (454)
T KOG4332|consen 157 RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSENKDLLTQ 236 (454)
T ss_pred cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhhHHHHHH
Confidence 432222211 333444555566666666654 4555665555444444443333222221111111110000
Q ss_pred hhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHH
Q 008070 365 HILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLT-WMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443 (579)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~ 443 (579)
.....+.+..+.++.++-....++-..++.+.. |-|..--+..+ .--|++++.+.++.++|+-+
T Consensus 237 ------------f~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSl 301 (454)
T KOG4332|consen 237 ------------FKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSL 301 (454)
T ss_pred ------------hhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHH
Confidence 001234456677776666665555555555443 33432211112 22477888888888888887
Q ss_pred HHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-----ccchhHHHHHHHHHH-hhhhhhhhhhhhhhccccCCC
Q 008070 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS-----HVRTPAMAVLCMACS-QGSDAFSQSGLYSNHQDIGPR 517 (579)
Q Consensus 444 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 517 (579)
..++..|-..+--.. ..+...+....+.+.... ....+...++.++.. ...+.+.+.....-.+.+|.+
T Consensus 302 a~Rl~s~s~~~ve~y-----mqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEe 376 (454)
T KOG4332|consen 302 ASRLLSRSSPKVESY-----MQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEE 376 (454)
T ss_pred HHHHHhcCCcccchH-----HHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHH
Confidence 777766554432111 111111111111111111 111222223333333 333333444444555667778
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHH
Q 008070 518 YAGVLLGLSNTAGVLAGVFGTAATGYILQR--GSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 518 ~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~--~g~~~~~~~~~~~~~l~~~~ 567 (579)
.|++.+-++..--++-.-++-.. .-.+. .+-+..|-++.+...++.+.
T Consensus 377 arstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 377 ARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHhhhhhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHH
Confidence 88877665544333322221110 00111 34456677766666655443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-06 Score=87.03 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=99.3
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHH----HHHHHHHhhhhchhhHHHHHHhcccCcCchhHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL----IMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSL 299 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll----~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~ 299 (579)
.+.+++..|+|.|++++++.+.+++=..+.+...+ +.+..+ +...+.|+..+..+.+...++.+.+|++.|+++.
T Consensus 261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q 339 (400)
T PF03825_consen 261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQ 339 (400)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 57789999999999999999999999999888731 444333 3345799999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhcccCcc------hHHHHhhHHHHHHHHHHHhhhc
Q 008070 300 AFVYSG-MYLGSVTGLAVSPILIQKFGWP------SVFYSFGSLGSIWFALWLKKAY 349 (579)
Q Consensus 300 g~~~~~-~~lG~~lgp~i~~~l~~~~gwr------~~f~i~~~~~li~~~l~~~~~~ 349 (579)
+++... .++|..+|..++|++.+++|-+ ..+.+.+++.++..++.+++.+
T Consensus 340 ~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk 396 (400)
T PF03825_consen 340 GLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFK 396 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 998764 6899999999999999987744 3445555555555555554444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-06 Score=89.55 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh----hhccCcchHHHHHHHHHH
Q 008070 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT----LVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr----~g~~~~~~~~~~~~~~~~ 468 (579)
..+..+........+..+++.|+.+.+|+++..+|.++.+.-+...+..++.|+++|| +||||..+.. ..+
T Consensus 14 yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~-----~~~ 88 (444)
T PRK09669 14 YGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLW-----FAI 88 (444)
T ss_pred hcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHH-----HHH
Confidence 3344444455566667889999999999999999999999999999999999999999 5665543311 111
Q ss_pred HHHHHHHHHHHhhc---cch-hHHHHHHHHHHhhhhhhhhhhhhhhccc-c-CCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 469 GFLGPAFFLTQLSH---VRT-PAMAVLCMACSQGSDAFSQSGLYSNHQD-I-GPRYAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 469 ~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
...+....+...+. ... .+..+...+...+... ......+...+ . ++++|++..+.......+|+.+++.+..
T Consensus 89 ~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 89 PFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111 111 2222222222222222 22222233222 2 4478888888888888888888876655
Q ss_pred HHHhc-------CChHHHHHHHHHHHHHHHHHHHH
Q 008070 543 YILQR-------GSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 543 ~l~~~-------~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
.+... .+|...+.+.+++.++..++.++
T Consensus 168 pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~ 202 (444)
T PRK09669 168 PLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF 202 (444)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 54432 35666666666666555544433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=79.52 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHH-Hhhcc
Q 008070 405 FILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLT-QLSHV 483 (579)
Q Consensus 405 ~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 483 (579)
...+-.+-..+++.++++..+++++...+..+..+..+..+++.+|+|.|+-+..+ +.+...+..+. .....
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg-------L~l~avg~~lF~pAa~~ 101 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG-------LLLYAVGAALFWPAASS 101 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHhhhhhh
Confidence 33344445566777999999999999999999999999999999999999654332 22222222222 12223
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhhhcc-ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------
Q 008070 484 RTPAMAVLCMACSQGSDAFSQSGLYSNHQ-DIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR--------------- 547 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~--------------- 547 (579)
..+...+..+++.....+...+....+.. .-+++.....+.+.+.+..+|++++|++++.+..+
T Consensus 102 ~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~ 181 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIK 181 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHH
Confidence 33444443333333333444444444333 34556788899999999999999999999999883
Q ss_pred ----CChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 548 ----GSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 548 ----~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
..++..|...+...++..+.....+
T Consensus 182 ~~~~~~v~~pYl~~~~~lvll~v~~~~~k 210 (422)
T COG0738 182 GADASSVQFPYLILAGLLVLLAVLILLSK 210 (422)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 2366677777766666655555544
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=92.75 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=115.1
Q ss_pred HHHHHhhhhhhhhhhhhhcC--CcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCc
Q 008070 215 AFLLCNMDRIVGGIWADKFG--GKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV 292 (579)
Q Consensus 215 ~~~~~~l~~~~~G~l~Dr~G--rr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~ 292 (579)
..+...+++++.|+++|+.. ++.+..+++++.+++.+.+++++ +++.+++.-++.|+..|........++.|+...
T Consensus 342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~--~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~ 419 (509)
T KOG2504|consen 342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT--TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL 419 (509)
T ss_pred HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 33455566699999999988 45667888888888888999999 899999999999999998888888899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHHHHHHHHHhhh
Q 008070 293 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWLKKA 348 (579)
Q Consensus 293 ~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~li~~~l~~~~~ 348 (579)
++...+.|+.....+++.++||++++++.+..+ |...|+..++..++..+.+++..
T Consensus 420 ~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 420 EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999999999999999999999999998877 99999999988887776655544
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.9e-06 Score=87.44 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhh----hhhccCcchHHHHHHHHH
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD----TLVSKGLSITAVRKIMQS 467 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~d----r~g~~~~~~~~~~~~~~~ 467 (579)
...+..+........+..|++.|+.+.+|+++..+|.++.+.-+..++..++.|+++| |+||||..+.. +
T Consensus 10 ~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~------g 83 (473)
T PRK10429 10 SYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILI------G 83 (473)
T ss_pred hhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhh------h
Confidence 3445555566677777889999999999999999999999999999999999999999 55887654321 1
Q ss_pred HHHHHHHHHHHHhhc--cc--hhHHHHHHHHHHhhhhhhhhhhhhhhccc-c-CCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008070 468 IGFLGPAFFLTQLSH--VR--TPAMAVLCMACSQGSDAFSQSGLYSNHQD-I-GPRYAGVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
.......+.++.... .. ..++..+...+.............+...+ . ++++|.+..+.......+|+.+.+.+.
T Consensus 84 ~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 84 TLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111 11 11222222222222222233333333333 3 468899988887777777777766655
Q ss_pred HHHHhc-------CChHHHHHHHHHHHHHHHHHHHH
Q 008070 542 GYILQR-------GSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 542 g~l~~~-------~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
..+.+. .+|.....+.+++.+++.++.++
T Consensus 164 ~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 199 (473)
T PRK10429 164 LPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLR 199 (473)
T ss_pred HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 544322 23555555555555554444433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.3e-06 Score=85.27 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=107.2
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc--CH---H--HHHHHHHHHHhhhhc-hhhHHHHH
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI--GL---P--FLLIMRAFMGIGEGV-AMPAMNNM 285 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~--~~---~--~ll~~r~l~Gig~g~-~~~~~~~~ 285 (579)
...+...+..+++..+.||+|||++++++..++.+..+++...... .. . ..+++.++..++.+. ..|...-+
T Consensus 313 ~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi 392 (485)
T KOG0569|consen 313 GIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFI 392 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHH
Confidence 3444555566899999999999999999999999888876644211 11 1 123344443333332 35778889
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPE 357 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~ 357 (579)
.+|++|++.|+.++++......++..+-...-..+.+.+|- +.|++..+.+++..+..++.+||++.+...
T Consensus 393 ~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 393 GAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred HHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 99999999999999999999988888887777777777776 788888888888888999999988765543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-05 Score=85.09 Aligned_cols=174 Identities=9% Similarity=-0.025 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh----hhccCcchHHHHHHHHH
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT----LVSKGLSITAVRKIMQS 467 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr----~g~~~~~~~~~~~~~~~ 467 (579)
...+..+..+.....+..|+..|+.+..|+++..+|.++.+.-+...+.-++.|+++|| +||||..+.. ..
T Consensus 13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~-----g~ 87 (460)
T PRK11462 13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLF-----GA 87 (460)
T ss_pred hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhH-----HH
Confidence 34444445566666777899999999999999999999999999999999999999996 5776654321 11
Q ss_pred HHHHHHHHHHHHhhccc---hhHHHHHHHHHHhhhhhhhhhhhhhhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008070 468 IGFLGPAFFLTQLSHVR---TPAMAVLCMACSQGSDAFSQSGLYSNHQDI--GPRYAGVLLGLSNTAGVLAGVFGTAATG 542 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~lg~~ig~~l~g 542 (579)
+.+.+...++...+..+ ...+..+...+.............+...+. ++++|++..++......+|..+++.+..
T Consensus 88 i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 88 LPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111 122222222222222223333333333222 3589999999999999998888887766
Q ss_pred HHHhcC-------ChHHHHHHHHHHHHHHHHHHHH
Q 008070 543 YILQRG-------SWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 543 ~l~~~~-------g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
.+.... +|.....+.+++.+++.++.+.
T Consensus 168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 655442 4566666666665555544443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.5e-06 Score=82.73 Aligned_cols=123 Identities=10% Similarity=0.071 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhc
Q 008070 209 VLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSK 288 (579)
Q Consensus 209 ~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~ 288 (579)
.........+..+++++.+++.||+|+|+++.++.++..++.++....+ +... ...-++.|++.+..+|...+...+
T Consensus 181 ~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~--~~~~-~~~~~l~g~~~s~i~P~~~s~a~~ 257 (310)
T TIGR01272 181 AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTH--GYVA-MWFVLALGLFNSIMFPTIFSLALN 257 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC--CHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445566667778889999999999999999888888887776665554 3332 345558899999999999999999
Q ss_pred ccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHH
Q 008070 289 WIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL 336 (579)
Q Consensus 289 ~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~ 336 (579)
.+|+ +.+.+.++. ....+|..++|++.|.+.+..|.+..|++..+.
T Consensus 258 ~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 258 ALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred hhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 8864 456666775 566799999999999999999999888754433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-05 Score=71.70 Aligned_cols=142 Identities=13% Similarity=0.021 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh-----ccCHHHHHHHHHHHHhhhhchhhH
Q 008070 207 VVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA-----RIGLPFLLIMRAFMGIGEGVAMPA 281 (579)
Q Consensus 207 ~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~-----~~~~~~ll~~r~l~Gig~g~~~~~ 281 (579)
.+-.+.....++..++ ++.|.+.|++|++.++++|.+...++..+..++- ..++|.+.+..++.|.+.+....+
T Consensus 38 ~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta 116 (250)
T PF06813_consen 38 QLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTA 116 (250)
T ss_pred HHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhH
Confidence 3455666666666664 8899999999999999999999999988866542 125678888888888888877778
Q ss_pred HHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 282 MNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 282 ~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
+.....+.|| ++||.+.|+.-...++++.+-..+...+.+.-.-.. +...+....+..++..++.+..
T Consensus 117 ~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f-ll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 117 SLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF-LLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred HHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHHHHHhhheecc
Confidence 7777788896 689999999999999999887777766665422333 3334443333333333334433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.8e-06 Score=84.26 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=131.9
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHH
Q 008070 383 LILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVR 462 (579)
Q Consensus 383 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~ 462 (579)
+++.++....+++..++..++...+.+++--++++ ++..+...|...+..-.+-++.-++.+++.+|+|+.+++..
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l--- 441 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL--- 441 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee---
Confidence 46778887778888888888888888888777887 67677777877777778888888999999999999987653
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhc-cccCCCchhHHHHHHHHH-HHHHHHHHHHH
Q 008070 463 KIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNH-QDIGPRYAGVLLGLSNTA-GVLAGVFGTAA 540 (579)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~g~~~~~-~~lg~~ig~~l 540 (579)
++.+...-++......++|.++.+=++-+......+....++. ...||+.+.++.|+.... ..+|-.+|.++
T Consensus 442 ------gLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslI 515 (618)
T KOG3762|consen 442 ------GLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLI 515 (618)
T ss_pred ------hhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhh
Confidence 2223333333333345556655555555544455555544444 446889999999988766 46799999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 541 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 541 ~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+|.+.+.+|-+..|..+++.+++.+++...+.
T Consensus 516 GG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 516 GGFVVERFGARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred hhhhheeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998888877777665553
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=89.50 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=111.5
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVY 303 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~ 303 (579)
++.+++..++|+-+++.+++.+.++=.+.....+ |.|..+..-+++|+..+..+.+..+++++..||+-+..+.++++
T Consensus 424 ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~ 501 (618)
T KOG3762|consen 424 FFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQ 501 (618)
T ss_pred HHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHH
Confidence 7789999999999999999999999999999999 99999999999999999999999999999999999999999876
Q ss_pred HH-HHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 304 SG-MYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 304 ~~-~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
.. .++|--+|.+|||.+.+.++-|..|++.++.+++.+++....
T Consensus 502 g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 502 GIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 54 578999999999999999999999999998888776665544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-05 Score=83.73 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhh---c-cCcchHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV---S-KGLSITAVRKIM 465 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g---~-~~~~~~~~~~~~ 465 (579)
+..+...++..+.. +.....++.++++.+|++..+.+.+.++..+...+-. ++|.++||++ + |+... +
T Consensus 28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l------~ 99 (468)
T TIGR00788 28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYL------V 99 (468)
T ss_pred HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHH------H
Confidence 34445456666666 6667778888888799999999988888888887755 4999999996 2 33221 1
Q ss_pred HHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhhhhhhhhh-hccccCCCch---hHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSH-VRTPAMAVLCMACSQGSDAFSQSGLYS-NHQDIGPRYA---GVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---g~~~g~~~~~~~lg~~ig~~l 540 (579)
... ++.....+..... .+......+++.+..+.....-...-. +.+..+ +.+ +...++......+|..+++.+
T Consensus 100 ~~~-~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l 177 (468)
T TIGR00788 100 LSG-LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL 177 (468)
T ss_pred HHH-HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence 111 1110111111111 222222222222222222322222222 333333 333 334444445566899999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 541 TGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 541 ~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
+|.+.+..+|+..|++.+++.++..+...++..
T Consensus 178 ~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E 210 (468)
T TIGR00788 178 GGPLLDKTLTRILFLITAALLLLQLFVSNLSKE 210 (468)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988888777554444433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.2e-05 Score=74.34 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=77.6
Q ss_pred hhhhhhhhhcCCcHHHHHHHHH-HHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIW-WSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFV 302 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~-~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~ 302 (579)
++.|.++|++|++.+.+.+..+ ..++-....|+. +.=.+...+.|+..+.........++...|+++.|.+.|..
T Consensus 318 pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~----lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~ 393 (459)
T KOG4686|consen 318 PVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF----LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFI 393 (459)
T ss_pred hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh----ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHH
Confidence 8999999999999876665544 444444444432 22346677888888877777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC
Q 008070 303 YSGMYLGSVTGLAVSPILIQKFG 325 (579)
Q Consensus 303 ~~~~~lG~~lgp~i~~~l~~~~g 325 (579)
+...++|..+.|++++.+.+.-|
T Consensus 394 qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 394 QSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHhhhhhHHhhhhheeecCCC
Confidence 99999999999999999998644
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=72.83 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccch
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRT 485 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (579)
.+...++.+-++ +|++...+|++.++..++..+.+++..++.+|+|..+.+. .++.++..+..+-.. . .
T Consensus 30 svgPLL~~Ir~~-~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~-------~~Llli~~G~~iR~~--~-~ 98 (395)
T COG2807 30 SVGPLLDEIRQD-LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLF-------LALLLIAAGILIRSL--G-G 98 (395)
T ss_pred hhhhhHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHH-------HHHHHHHHHHHHHhc--c-c
Confidence 333444544444 8999999999999999999999999999999999986432 222233222222211 1 2
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Q 008070 486 PAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-SWDDVFKVAVVLYIIG 564 (579)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-g~~~~~~~~~~~~~l~ 564 (579)
....+....+.+.........+....++-.|++.+..+|++.+..++++++++.+.-.+.++. ||+....+.+...+++
T Consensus 99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA 178 (395)
T COG2807 99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA 178 (395)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence 233333333444444455555556666668889999999999999999999999999999886 8999999999999999
Q ss_pred HHHHHHh
Q 008070 565 TLVWNLF 571 (579)
Q Consensus 565 ~~~~~~~ 571 (579)
.++++..
T Consensus 179 l~~WlPq 185 (395)
T COG2807 179 LLIWLPQ 185 (395)
T ss_pred HHHHhhh
Confidence 8888776
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-05 Score=84.44 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=103.9
Q ss_pred HhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHH
Q 008070 417 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL-CMAC 495 (579)
Q Consensus 417 ~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 495 (579)
+..++...+.+.+.+++.++.+++.+..+.+.||+...+ .+...+++...+..+... ..+.+..++ -+++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~--------~l~~~~~~w~~~~~~~~~-~~s~~~~ialr~ll 144 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK--------GLSVSGILWGLFGFLTAA-VHSFPGLIALRFLL 144 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH--------HHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence 446777888999999999999999999999999998432 222222222222212222 233344444 4444
Q ss_pred HhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHHHH
Q 008070 496 SQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ------RGSWDDVFKVAVVLYIIGTLVWN 569 (579)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~------~~g~~~~~~~~~~~~~l~~~~~~ 569 (579)
|.+-....+........-..++++|..+|+.++...+|+++|++++..+.. ..||++.|++-+++.++..++.+
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 444444444444445555777999999999999999999999999988753 37999999999999888777666
Q ss_pred HhhcC
Q 008070 570 LFATG 574 (579)
Q Consensus 570 ~~~~~ 574 (579)
++.+.
T Consensus 225 ~~lp~ 229 (495)
T KOG2533|consen 225 FFLPD 229 (495)
T ss_pred EEecC
Confidence 55443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0055 Score=64.93 Aligned_cols=229 Identities=10% Similarity=0.035 Sum_probs=135.1
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhh--hc---c------------------------CHHHHHHHHHHHHhh
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--AR---I------------------------GLPFLLIMRAFMGIG 274 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a--~~---~------------------------~~~~ll~~r~l~Gig 274 (579)
.+..++++++++.+++-+....+.....++++. |. . +.|.+.+..++.-+-
T Consensus 77 ~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElw 156 (491)
T PF03219_consen 77 ILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELW 156 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999998777666666655555442 10 0 012222333333333
Q ss_pred hhchhh-HHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---------ccCcchHHHHh----hHHHHHH
Q 008070 275 EGVAMP-AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ---------KFGWPSVFYSF----GSLGSIW 340 (579)
Q Consensus 275 ~g~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~---------~~gwr~~f~i~----~~~~li~ 340 (579)
...... ....+..|.++.+|-.|..+++..+.++|.+++..+..++.+ ...|...+... .+.+++.
T Consensus 157 gsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i 236 (491)
T PF03219_consen 157 GSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVI 236 (491)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHH
Confidence 333333 457888999999999999999999999999999998888877 12354433222 1222222
Q ss_pred HHHHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 008070 341 FALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK 420 (579)
Q Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g 420 (579)
..+.....+...+++... +... .+.....+..-...++.++++|.+..+++...+++.....+....-..+++.+-
T Consensus 237 ~~~~~~~~~~vl~~~~~~-~~~~---~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~ 312 (491)
T PF03219_consen 237 ILLYRYMNKNVLTDPRFY-PSAK---KKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP 312 (491)
T ss_pred HHHHHHHHHHccCccccc-hhhh---cccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222222221111111110 0000 001111122223567888899999999999888888888887777667776554
Q ss_pred CChhh---hhHHhHHHHHHHHHHHHHHHHHhhhhhccCc
Q 008070 421 FNLTE---SGLFCVLPWLTMAVFANMGGWIADTLVSKGL 456 (579)
Q Consensus 421 ~s~~~---~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~ 456 (579)
-+.+. .|-.....++..++..++++.+.+|+|-+..
T Consensus 313 ~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~ 351 (491)
T PF03219_consen 313 DPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTA 351 (491)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33222 2344455566666666778888888886643
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.6e-05 Score=72.48 Aligned_cols=161 Identities=12% Similarity=0.167 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh-
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS- 481 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 481 (579)
..|.+..|.|.. ++.+|++..+...+.....++..+| ++.|.+.|++|.+..+.++. .. .+++.........
T Consensus 17 t~Y~Fs~yS~~L-k~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~--~~---~~~GY~~~~l~~~~ 89 (250)
T PF06813_consen 17 TTYTFSAYSPQL-KSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGA--VL---GFVGYGLLWLAVSG 89 (250)
T ss_pred cccchhhhhHHH-HHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHH--HH---HHHHHHHHHHHHhC
Confidence 445555566655 4559999999999999989988775 88999999999885544332 11 1111111111111
Q ss_pred cc--chhHHHHHHHHHHhhhhhhhh-hhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 008070 482 HV--RTPAMAVLCMACSQGSDAFSQ-SGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAV 558 (579)
Q Consensus 482 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~ 558 (579)
.. ...+...+...+++....... .........+ |++||++.|+.-....+++++-..+...+.+. +....+.+.+
T Consensus 90 ~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la 167 (250)
T PF06813_consen 90 RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLA 167 (250)
T ss_pred ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHH
Confidence 11 233333333334433333332 3333344444 67899999999999999999988888877776 3333333433
Q ss_pred HH-HHHHHHHHHHhh
Q 008070 559 VL-YIIGTLVWNLFA 572 (579)
Q Consensus 559 ~~-~~l~~~~~~~~~ 572 (579)
.. .+++.+...+++
T Consensus 168 ~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 168 VLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHhhhee
Confidence 33 344444444443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=84.33 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhh----hhhccCcchHHHHHHHHHHHHHHH
Q 008070 398 FCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD----TLVSKGLSITAVRKIMQSIGFLGP 473 (579)
Q Consensus 398 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~ 473 (579)
+...........+++.|+.+..|+++...|++..+.-+..++..++.|.++| |+||||..... +......
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~------g~i~~~~ 84 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILI------GAILLAL 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeeh------hhHHHHH
Confidence 4445555566678889999989999999999999999999999999999999 78988865421 1111111
Q ss_pred HHHHHHhh-c-----cchhHHHHHHHHHHhhhhhhhhhhhhhhcccc-C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 474 AFFLTQLS-H-----VRTPAMAVLCMACSQGSDAFSQSGLYSNHQDI-G-PRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 474 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
.+.++... . .....+..+...+.............+...+. + +++|.+..+.......+|..+...+.+.+.
T Consensus 85 ~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 85 SFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11111111 1 01112222222222333333344434433333 3 478999999998888888887777777777
Q ss_pred hcC-------ChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 546 QRG-------SWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 546 ~~~-------g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
+.. +|.....+.+++.+++.++..+..|+
T Consensus 165 ~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 165 SWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred hhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 542 57777777777777776666655444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=84.36 Aligned_cols=141 Identities=18% Similarity=0.119 Sum_probs=102.2
Q ss_pred hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHh
Q 008070 419 LKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQ 497 (579)
Q Consensus 419 ~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 497 (579)
...+.....+..++..++..+|.++.|.++||+|||+++..+ +++..+.-.......+.....++ ++.+.
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~---------~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVS---------LLLFIIFGILTAFAPNYWMFLIFRFLSGF 183 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHH---------HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 456777788888999999999999999999999999755432 22222222222233444444444 44555
Q ss_pred hhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 498 GSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+..+..........+.++|++|+.+..+ ......++.+++...+++.. +|++.+++..+..++.++++++.
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHcc
Confidence 5555555555556777899999999999 88888899999999999988 89999999888888776664443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=68.02 Aligned_cols=278 Identities=13% Similarity=0.013 Sum_probs=144.8
Q ss_pred HHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-----c--------cC---cch
Q 008070 265 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQ-----K--------FG---WPS 328 (579)
Q Consensus 265 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~-----~--------~g---wr~ 328 (579)
.+.-++.-+-.+....+...+.-.+..+++++.|..-...+.++|..++..+--.+-+ . .| -..
T Consensus 122 t~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~ 201 (544)
T PF13000_consen 122 TWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSG 201 (544)
T ss_pred HHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHH
Confidence 3444445555566777888888888888888888887777777777776655433322 0 01 111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCCCCCChhh--c---HHH--HhhhhcCCcccc---ccc----c---hhHHHHhhchHHH
Q 008070 329 VFYSFGSLGSIWFALWLKKAYSSPKEDPEL--R---AEE--KRHILGGSISKE---AVS----V---IPWKLILSKAPVW 391 (579)
Q Consensus 329 ~f~i~~~~~li~~~l~~~~~~~~~~~~~~~--~---~~~--~~~~~~~~~~~~---~~~----~---~~~~~l~~~~~~~ 391 (579)
-..+.|.+.++..++..++.+|.|..+... + ..+ .++......+.+ ... . ..+..+++-|.+.
T Consensus 202 yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~ 281 (544)
T PF13000_consen 202 YLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQ 281 (544)
T ss_pred HHHHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHH
Confidence 123344455555555566666654322100 0 000 000000000000 001 1 1233456778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhh--ccCc-------------
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV--SKGL------------- 456 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g--~~~~------------- 456 (579)
.+++.....-.++.........=+.+ .|++.++.+++..+. +...++.|+++.|+. ++.+
T Consensus 282 ~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~----~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~ 356 (544)
T PF13000_consen 282 TLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLID----FPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRA 356 (544)
T ss_pred HHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHh----hhHHHHHHHHhhhhhcCCCccccccccccccccc
Confidence 88888888888877777777777777 799999988765443 344444444444442 2211
Q ss_pred ---ch--HH----HHHHHHHHH-HHHHHHH-HH---Hhhc---cc--hhHHHHHHHHHHhhhhhhhhhhhhhh-ccccCC
Q 008070 457 ---SI--TA----VRKIMQSIG-FLGPAFF-LT---QLSH---VR--TPAMAVLCMACSQGSDAFSQSGLYSN-HQDIGP 516 (579)
Q Consensus 457 ---~~--~~----~~~~~~~~~-~~~~~~~-~~---~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 516 (579)
.. .+ ....+.+.. =++.++. .. .++. .+ .+.++++...+..+..........+. ....+|
T Consensus 357 ~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP 436 (544)
T PF13000_consen 357 NKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDP 436 (544)
T ss_pred cchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 00 00 011111110 0111111 00 1110 01 11222233334444444444444443 344678
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008070 517 RYAGVLLGLSNTAGVLAGVFGTAATGYILQR 547 (579)
Q Consensus 517 ~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~ 547 (579)
..-|+.+.+.|++.++|+-.-..+.=++.|.
T Consensus 437 ~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 437 AIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred ccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 8999999999999999998888887777774
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.001 Score=66.29 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=91.1
Q ss_pred hhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHh
Q 008070 418 VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQ 497 (579)
Q Consensus 418 ~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (579)
.+|++..+++.++....+.+++...+.|.++||+|||+.- ++.++.-.+.. +.. ..+....+++.=++++
T Consensus 63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~sc---l~k-~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSC---LTK-HSSNYPVLLLGRVLGG 132 (354)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHH---HHH-hccccHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999632 11122211111 111 2334444444444555
Q ss_pred hhhhhhhhhhhhh------ccccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHH
Q 008070 498 GSDAFSQSGLYSN------HQDIGPRYAGVLLGLSNT-AGVLAGVFGTAATGYILQRGS--WDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 498 ~~~~~~~~~~~~~------~~~~~~~~~g~~~g~~~~-~~~lg~~ig~~l~g~l~~~~g--~~~~~~~~~~~~~l~~~~~ 568 (579)
............. ....|++..+..++...+ .+.+-.+++..++-.+.+..+ ....|....++.+++.++.
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I 212 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLI 212 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHH
Confidence 5545444443331 123455556676766653 344455556666666666644 4778888888888877766
Q ss_pred HHhhcC
Q 008070 569 NLFATG 574 (579)
Q Consensus 569 ~~~~~~ 574 (579)
....++
T Consensus 213 ~~~W~E 218 (354)
T PF05631_consen 213 LKTWPE 218 (354)
T ss_pred Hhcccc
Confidence 554443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=74.43 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh----hccCcchHHHHHHHH
Q 008070 391 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL----VSKGLSITAVRKIMQ 466 (579)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~----g~~~~~~~~~~~~~~ 466 (579)
.......+...+.......|+..|+.++.|+++..+|.++.+.=+.-++.-++.|.++||. ||+|..+ ...
T Consensus 15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~l-----L~g 89 (467)
T COG2211 15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWL-----LWG 89 (467)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHH-----HHH
Confidence 3445556666777778888999999999999999999999999999999999999999974 5555432 111
Q ss_pred HHHHHHHHHHHHHhhc----cchhHHHHHHHHHHhhhhhhhhhhhhhhccc--cCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQLSH----VRTPAMAVLCMACSQGSDAFSQSGLYSNHQD--IGPRYAGVLLGLSNTAGVLAGVFGTAA 540 (579)
Q Consensus 467 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~~~lg~~ig~~l 540 (579)
.+.+.+...+...... ....+..+..++++.+...... +..+...+ -.|++|.+..+.-..+..+|..+...+
T Consensus 90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~ 168 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL 168 (467)
T ss_pred hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222221 2223333333333333333222 22222222 246899999999999999998888877
Q ss_pred HHHHHhc-------CChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 541 TGYILQR-------GSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 541 ~g~l~~~-------~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
.+.+... .||+....+.+++.++..++.++--+
T Consensus 169 ~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ 208 (467)
T COG2211 169 FPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVK 208 (467)
T ss_pred HHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777654 35666666666666555555444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.1e-05 Score=65.57 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCc
Q 008070 213 FSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPV 292 (579)
Q Consensus 213 ~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~ 292 (579)
++.+....+..++.+.+.+++|.|+.+++|.+.+.+-.+.. +-+ +.+.++...++.|++.+..+++...++.+..++
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 33444455556778889999999999999999988666554 445 688899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008070 293 SERSRSLAFVYSGMYLGSVTGLAVSPILI 321 (579)
Q Consensus 293 ~~r~~~~g~~~~~~~lG~~lgp~i~~~l~ 321 (579)
+++++..+++......+.++|.++.-.+.
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888766553
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=79.20 Aligned_cols=169 Identities=14% Similarity=0.047 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-hccCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 008070 403 GTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFLTQLS 481 (579)
Q Consensus 403 ~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
.+|++...+..|+.+.+|++...+..++..+....-+..+++|+++|++ |+++.+..+. ++..++.++..+......
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~--ii~~lG~~llai~a~~~~ 79 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLS--IVYVVGHALLSFGAIPSS 79 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHhccCccc
Confidence 3566677788888888999999888888888877888888999999975 6665443322 111122211111000000
Q ss_pred c-cchhHHHHHHHHHHhhhhhhhhhhhhhhc-cccCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C
Q 008070 482 H-VRTPAMAVLCMACSQGSDAFSQSGLYSNH-QDIGP---RYAGVLLGLSNTAGVLAGVFGTAATGYILQRG-------S 549 (579)
Q Consensus 482 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-------g 549 (579)
. .......++.+.+..++.+..-+...... +...+ +.+-..+.++....++|+.+++.+.+++.+.. +
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~ 159 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC 159 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 0 01111122222222223333333333322 22333 24677888888999999999999999987542 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 550 WDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
|..+|.+.+++++++.+++....+
T Consensus 160 ~~~aF~i~~i~m~ia~lvf~~g~k 183 (654)
T TIGR00926 160 YPLAFGVPAILMILALIVFMAGSK 183 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999998888877765543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=76.25 Aligned_cols=111 Identities=20% Similarity=0.290 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc-------CHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcC---chhHHHHHHHHHH
Q 008070 237 PVLGFGVIWWSVATVLTPVAARI-------GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVS---ERSRSLAFVYSGM 306 (579)
Q Consensus 237 ~~l~~~~~~~~~~~ll~~~a~~~-------~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~---~r~~~~g~~~~~~ 306 (579)
++++++.+++.+|.++..++... +.+.++++-++.++|.|+.-+...++++|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788899999998885444211 1256888899999999999999999999999765 4677888999999
Q ss_pred HHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 307 YLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 307 ~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
++|..++..+.+++-+++||.+.|.+.++..++..+..+..
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999888777766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00028 Score=76.35 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=86.6
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhh
Q 008070 425 ESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFS 503 (579)
Q Consensus 425 ~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 503 (579)
+.+++.+...++..++.++.|+++|++|||+.+..+. .+...+..+... ..+...+.+. ++.+.+.+...
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~-------~~~~iG~ii~~~--a~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV-------VLFLIGAIIIAL--APSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHH--hhhHHHHHHHHHHhccchhhhh
Confidence 3489999999999999999999999999997544322 111111111111 1233333333 33444443333
Q ss_pred hhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHH
Q 008070 504 QSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG--SWDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 504 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~--g~~~~~~~~~~~~~l~~~~~ 568 (579)
........+..|++.||...+..+....+|..++ .+.+...+.. +|+..+.+..+.+++..+..
T Consensus 161 ~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~ 226 (513)
T KOG0254|consen 161 VLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGM 226 (513)
T ss_pred hcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 3333334444566899999999999999888887 6666666553 89988888777777666663
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=56.73 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcc
Q 008070 392 ALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLS 457 (579)
Q Consensus 392 ~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~ 457 (579)
.+-...++.+.+...+..++|.|+++ .|+++.++|.+.++..+..+++.+++|.++||+++++..
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 34456677788888899999999998 799999999999999999999999999999999998643
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0058 Score=66.15 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=94.2
Q ss_pred hhhhhhhhhc-CCcHHHHHHHHHHHHHHHHHHhhhcc--------------------C---HHHHHHHHHHHHhhhhchh
Q 008070 224 IVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARI--------------------G---LPFLLIMRAFMGIGEGVAM 279 (579)
Q Consensus 224 ~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ll~~~a~~~--------------------~---~~~ll~~r~l~Gig~g~~~ 279 (579)
++++.++|-| ||-+++.++.++..++..+..++... + ...+....-+..+|.|+.-
T Consensus 91 l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r 170 (571)
T KOG1237|consen 91 LLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR 170 (571)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC
Confidence 7889999976 88889999998888886554332100 0 1345666677788999999
Q ss_pred hHHHHHHhcccC---cC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHh
Q 008070 280 PAMNNMLSKWIP---VS---ERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLK 346 (579)
Q Consensus 280 ~~~~~~i~~~~~---~~---~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~ 346 (579)
+...++-+|-++ ++ .+...+.++....++|.+++..+..++-++.+|.+.|.+..+..++.+++++.
T Consensus 171 ~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~ 243 (571)
T KOG1237|consen 171 PCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP 243 (571)
T ss_pred CcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence 999999999997 22 23367889999999999999999888888899999999888777666555443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00093 Score=70.33 Aligned_cols=130 Identities=21% Similarity=0.132 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 008070 434 WLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQD 513 (579)
Q Consensus 434 ~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (579)
++..++.+.+.|.++||+|||..+.... .+.++....+.... +| .++...+.++...............
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~------~~~~l~~~~~~~~~----~~-~~~~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPL------FGTILPALCLLFQG----YW-FFLLLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHH------HHHHHhHHHHHHHH----HH-Hhhhcccccchhhhhhhhhhheeec
Confidence 5677888889999999999996543221 22222222221111 22 2223333444444444444444444
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 514 IGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 514 ~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
...+.|...+|+.+.....+..++|.+++.+.+..|+..+|.+..+..++..+...+..++
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 5668999999999999999999999999999999999999999999988888877666544
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.016 Score=60.88 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=53.6
Q ss_pred HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHH-Hh----hh-ccCHHHHHHHHHHHHhhhhchhhHHHHHHh
Q 008070 214 SAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLT-PV----AA-RIGLPFLLIMRAFMGIGEGVAMPAMNNMLS 287 (579)
Q Consensus 214 ~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~-~~----a~-~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~ 287 (579)
...+...+..+..-.+..|+..|.=+..++++..+..++. .+ .+ ...++..++.-++.|++.+.......++.+
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~ 132 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINSGMALLQGSLFGLAG 132 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHhhhhhhcccchhhcc
Confidence 3344444444555566666665333333433222222221 11 11 013556677778889999888888887766
Q ss_pred cccCcCchhHHHHHHHHHHHHHHHHHHHH
Q 008070 288 KWIPVSERSRSLAFVYSGMYLGSVTGLAV 316 (579)
Q Consensus 288 ~~~~~~~r~~~~g~~~~~~~lG~~lgp~i 316 (579)
.+|+ +.++.+..+.+++++++.++
T Consensus 133 -~fp~----~~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 133 -VFPS----TYSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred -cCCH----HHHHHHHhcchhHHHHHHHH
Confidence 4553 34566666677776665554
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=65.08 Aligned_cols=150 Identities=16% Similarity=0.032 Sum_probs=97.3
Q ss_pred HHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhh-----ccCcchHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 008070 415 YNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV-----SKGLSITAVRKIMQSIGFLGPAFFLTQLSH------- 482 (579)
Q Consensus 415 l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 482 (579)
+..+++++....+.+.++..+.. ..++..|+.+|+.+ ||..+++... ...+.+..+..........
T Consensus 6 MIvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~-~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGT-LLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHH-HHHHHHHHHHHHHHHHHccccccccc
Confidence 34458888888888888877766 46899999999998 7766555432 3333333333333333333
Q ss_pred cchhH---HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008070 483 VRTPA---MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV 559 (579)
Q Consensus 483 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~ 559 (579)
....+ ..+.+...+.+......+......+..++++|+++.++...+.-+|.+++..+.|.+.+.++.....-+...
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~ 163 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG 163 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence 12222 122223333333333444444456667889999999999999999999999999999998887666655554
Q ss_pred HHHHHHH
Q 008070 560 LYIIGTL 566 (579)
Q Consensus 560 ~~~l~~~ 566 (579)
..++..+
T Consensus 164 ~a~i~~~ 170 (403)
T PF03209_consen 164 VALIALL 170 (403)
T ss_pred HHHHHHH
Confidence 4444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.8e-06 Score=91.76 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=94.4
Q ss_pred hhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHH----hhhccC---HHHHHHHHHHHHhhhh-chhhHHHHHHhcccCc
Q 008070 221 MDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTP----VAARIG---LPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPV 292 (579)
Q Consensus 221 l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~----~a~~~~---~~~ll~~r~l~Gig~g-~~~~~~~~~i~~~~~~ 292 (579)
++.++...+.||+|||++++.+.++.+++.+.++ ...+.+ -...++.-.+..++.+ ...+....+.+|.+|.
T Consensus 301 ~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt 380 (451)
T PF00083_consen 301 LGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT 380 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccc
Confidence 3446777999999999999999999888877764 111100 0111222222222222 2345666888999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC
Q 008070 293 SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED 355 (579)
Q Consensus 293 ~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~ 355 (579)
+.|+.+.++......++.++++.+...+.+..+-...+++.+.+.++..+..+++.||+..+.
T Consensus 381 ~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 381 KVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 999999999999999999999988888877666455666677777777777778888776544
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0029 Score=60.06 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=56.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHh---h--cccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhhhh
Q 008070 293 SERSRSLAFVYSGMYLGSVTGLAVSPIL---I--QKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHIL 367 (579)
Q Consensus 293 ~~r~~~~g~~~~~~~lG~~lgp~i~~~l---~--~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (579)
++|+....+...+.++|.++..+.--.- . -.-.|++++.+.+++.++.+++...+-.+-....+. +++++.
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~-~k~~k~--- 77 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPK-EKQEKE--- 77 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcc-cccccc---
Confidence 4566666677777888887654432111 1 123599999999888877766666553221111111 011000
Q ss_pred cCCcccccccchhHHHHhhchHHHHHHHHHHHHH
Q 008070 368 GGSISKEAVSVIPWKLILSKAPVWALIISHFCHN 401 (579)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 401 (579)
+...........++|++..|...+.+....
T Consensus 78 ----~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wL 107 (267)
T PF07672_consen 78 ----NSTLSKKPSYKSILKEKETWKWILIYGIWL 107 (267)
T ss_pred ----cccccccchHHHHHccchHHHHHHHHHHHh
Confidence 001112245778899999888776665543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.012 Score=63.19 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHH-
Q 008070 394 IISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLG- 472 (579)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~- 472 (579)
.+..++..++...+.....-.+...+|.+....+.+.+++.++..+|+.+++++.++..++.. . .-+.++++.
T Consensus 20 ~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~-----~e~~i~l~~~ 93 (521)
T PRK03612 20 LAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-A-----VELLLALLGG 93 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-H-----HHHHHHHHHH
Confidence 344445555555666666666666688888888999999999999999888877643322211 1 111111111
Q ss_pred --HHHHHHHhhccchh-H-HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Q 008070 473 --PAFFLTQLSHVRTP-A-MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ-R 547 (579)
Q Consensus 473 --~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~-~ 547 (579)
..+........... . ...+.+..+ +..+...+...........+..|...|-......+|+++|+++.+++.- .
T Consensus 94 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~-~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~ 172 (521)
T PRK03612 94 LSALILYAAFAFQGLSRLLLYVLVLLIG-LLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPR 172 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHh
Confidence 11111111110011 1 111111222 2222223333333333223345777888888999999999999998876 5
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 008070 548 GSWDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 548 ~g~~~~~~~~~~~~~l~~~ 566 (579)
.|.....++.+.+.++..+
T Consensus 173 lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 173 LGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 7776665555555544443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=73.49 Aligned_cols=129 Identities=11% Similarity=0.015 Sum_probs=96.4
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhcc--CHHHHHHHHHHHHhhhh-chhhHHHHHHhcccCcCchhHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARI--GLPFLLIMRAFMGIGEG-VAMPAMNNMLSKWIPVSERSRSLA 300 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~--~~~~ll~~r~l~Gig~g-~~~~~~~~~i~~~~~~~~r~~~~g 300 (579)
.+...++|+.|||++.+.|.+++.+..+..+...+. +-..+++...+..+... +-......+-+|.+|.+-|+..-|
T Consensus 366 w~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hG 445 (538)
T KOG0252|consen 366 WFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHG 445 (538)
T ss_pred eEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhh
Confidence 566778999999999999999999999998887620 11222333333332221 122344456789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-----ccCcchHHHHhhHHHHHHHHHHHhhhcCCCC
Q 008070 301 FVYSGMYLGSVTGLAVSPILIQ-----KFGWPSVFYSFGSLGSIWFALWLKKAYSSPK 353 (579)
Q Consensus 301 ~~~~~~~lG~~lgp~i~~~l~~-----~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~ 353 (579)
+.....-.|+++|...-.++.+ ..+.++++++.+.+.++..+..++++ |+..
T Consensus 446 IsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~ 502 (538)
T KOG0252|consen 446 ISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP-ETKG 502 (538)
T ss_pred HHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee-cccc
Confidence 9999999999999999999988 78999999999988877666665554 4443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.25 Score=51.38 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=133.1
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc-------------------c-----------CHHHHHHHHHHHHh
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR-------------------I-----------GLPFLLIMRAFMGI 273 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~-------------------~-----------~~~~ll~~r~l~Gi 273 (579)
++.+++.+++.+.+++-+-...+....+++++.-- . +.|...+..++.-+
T Consensus 80 ~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aEL 159 (509)
T COG3202 80 IIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAEL 159 (509)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHH
Confidence 67788999999999987777777777777665310 0 01333333334334
Q ss_pred hhhchhh-HHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhccc-C---------cchHHHHhhHHHHHHHH
Q 008070 274 GEGVAMP-AMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKF-G---------WPSVFYSFGSLGSIWFA 342 (579)
Q Consensus 274 g~g~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~-g---------wr~~f~i~~~~~li~~~ 342 (579)
-.+.... .......|.+..+|-.|..+++..+.+++.+++..+..++..+. . .+..+.+.++.++++.+
T Consensus 160 WgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~ 239 (509)
T COG3202 160 WGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAIL 239 (509)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333 55677888888889999999999999999999998888887622 1 33344445555455555
Q ss_pred HHHhhhcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 008070 343 LWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFN 422 (579)
Q Consensus 343 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s 422 (579)
+..+.-+...+.+.-.....++ ++....+-.-...++.+.+.|-++.+++...+++.+...+....-.-.++.+-..
T Consensus 240 l~~~~~r~il~~~~f~~~~~~k---k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~ 316 (509)
T COG3202 240 LYRYINRNVLTDPLFYLRAKKK---KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTT 316 (509)
T ss_pred HHHHHHhhcccCcchhHHHhcc---cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCh
Confidence 4444433332222211000000 0001111122345777888999998888888888888777665444444433333
Q ss_pred hhhh---hHHhHHHHHH-HHHHHHHHHHHhhhhhcc
Q 008070 423 LTES---GLFCVLPWLT-MAVFANMGGWIADTLVSK 454 (579)
Q Consensus 423 ~~~~---g~~~~~~~~~-~~ig~~~~g~l~dr~g~~ 454 (579)
.+.. |.+....++. .++...+++-+.+|.|-.
T Consensus 317 ~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~ 352 (509)
T COG3202 317 NEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWF 352 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 3333 3333344444 334445667777777654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.004 Score=65.62 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhh----ccCcchHHHHHHHHHHHHHHHHHHHHHhhc-c
Q 008070 409 TWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV----SKGLSITAVRKIMQSIGFLGPAFFLTQLSH-V 483 (579)
Q Consensus 409 ~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 483 (579)
.-...|+++.+|+++.+...+..+..+... ..++.|.++|-+. ||+..... ...++. +..+.+..... .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i----~~~~~~-~~~~~~~~~~~~~ 83 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMII----GWLLGA-VSALVLALLPASE 83 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHH----HHHHHH-HHHHHHHhccccc
Confidence 344557777799999998887777666554 4568899999873 44432211 111111 11111111111 1
Q ss_pred chhHHHHHHHHHHhhhhhhhhhhhhh----hccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008070 484 RTPAMAVLCMACSQGSDAFSQSGLYS----NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV 559 (579)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~ 559 (579)
.......+++.+........-...-. ..+. .|+.+|...+.......+|+.++..+.|.+.+..+++..|.+.++
T Consensus 84 ~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~-~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~ 162 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFADVAADALVVELARR-EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAA 162 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHH
Confidence 22222222222222222222222221 2222 333488999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHhhc
Q 008070 560 LYIIGTLVWNLFAT 573 (579)
Q Consensus 560 ~~~l~~~~~~~~~~ 573 (579)
+.++..+..+++.+
T Consensus 163 ~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 163 LPLLMLIVALFLLE 176 (433)
T ss_pred HHHHHHHHHHHhhh
Confidence 77766555555444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=61.85 Aligned_cols=311 Identities=11% Similarity=0.071 Sum_probs=156.1
Q ss_pred HHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCch
Q 008070 216 FLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSER 295 (579)
Q Consensus 216 ~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r 295 (579)
.+...+..+.+..+.||+.--.=+.+..++.+.+.++.+++. +.++-+.+-.+..++.|.......++-+.+-
T Consensus 72 ilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~--s~~~sL~GV~~aSissGlGEiTFL~lss~Y~----- 144 (409)
T KOG3880|consen 72 ILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSN--SVPMSLLGVVFASISSGLGEITFLALSSRYP----- 144 (409)
T ss_pred hhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEecc--chhHHHhhhhhhhhcCCcceeehhhhhccCC-----
Confidence 334444456666778887554444556667788888899998 7888888888888888877666666544432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCCh-hhcHHHH---hhhhc-
Q 008070 296 SRSLAFVYSGMYLGSVTGLAVSPILIQ--KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDP-ELRAEEK---RHILG- 368 (579)
Q Consensus 296 ~~~~g~~~~~~~lG~~lgp~i~~~l~~--~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~-~~~~~~~---~~~~~- 368 (579)
....+.+..+.+.++++|..--..+.+ .++-|.+.++...+.++.+...++.+++++.... ...+... +....
T Consensus 145 ~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~~~ptl~~~~~~~~~~~~~~ 224 (409)
T KOG3880|consen 145 SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESVYSPTLQPSTEIIPSQYLPF 224 (409)
T ss_pred CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccccCCCcCccceeccCCCCcc
Confidence 234555666677777777766555655 3567888888877777766666666655433221 1110000 00000
Q ss_pred CCcccc--cccchhHHH-HhhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-hhCCCh---hhhhHHhHHHHHHHHHH
Q 008070 369 GSISKE--AVSVIPWKL-ILSKAPVWALIISHFCHNWGTFILLT-WMPTYYNQ-VLKFNL---TESGLFCVLPWLTMAVF 440 (579)
Q Consensus 369 ~~~~~~--~~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~~~~~~-~~p~~l~~-~~g~s~---~~~g~~~~~~~~~~~ig 440 (579)
...+.+ .......++ +.+-+++...++-.+..+++.|.++. ..+..+-+ ..|++. .+.-++.....++..+.
T Consensus 225 ~a~e~~sv~s~~~~~~e~~~~i~pll~~MvPL~~VY~~EY~INQGl~ell~F~c~~g~sls~~sqYRwyqvlYQlGVFiS 304 (409)
T KOG3880|consen 225 EAAEEKSVPSRRLGLKETLKRIKPLLKYMVPLALVYFAEYFINQGLAELLLFPCSHGFSLSKDSQYRWYQVLYQLGVFIS 304 (409)
T ss_pred cccccccCchhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhEEeccccCCccchhhcchhhheeeeeeEEEE
Confidence 000011 111112222 22223333355555555556555544 23332221 123322 22334444444433322
Q ss_pred HHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HhhhhhhhhhhhhhhccccCCCch
Q 008070 441 ANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMAC-SQGSDAFSQSGLYSNHQDIGPRYA 519 (579)
Q Consensus 441 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 519 (579)
+- +-++-+-+.+. .. .++-++-+ +..+.-......+..+.+.++.+. |..++.........+.++.+|+.|
T Consensus 305 RS-----S~~~~~~p~l~-~L-ailQ~vNl-~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~r 376 (409)
T KOG3880|consen 305 RS-----SINLFTMPYLW-LL-AILQFVNL-LFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVR 376 (409)
T ss_pred ec-----cceEEechHHH-HH-HHHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHH
Confidence 21 11111111110 00 01111111 111111122233444444444433 334444445555567778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 008070 520 GVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 520 g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
--+++.....-.+|..++..++
T Consensus 377 Efamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 377 EFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHhHhhheecchhhHHHHHHHh
Confidence 9999988777777766665554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.096 Score=54.66 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
..+.+.+..++..++.-.+.+..+.++.+.+.-+-.-.+.+...-.+..++.....|...||..|.+........=-..+
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 44667788888888888889999999999766565666666667777788888889999999998886655432111122
Q ss_pred HHHHHHHHHHHhhccc----hh-H-HHHHHHHHHhhhhhhhhhhhhhhc-c-------ccCCCchhHHHHHHHHHHHHHH
Q 008070 469 GFLGPAFFLTQLSHVR----TP-A-MAVLCMACSQGSDAFSQSGLYSNH-Q-------DIGPRYAGVLLGLSNTAGVLAG 534 (579)
Q Consensus 469 ~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~g~~~g~~~~~~~lg~ 534 (579)
+.....+......... .. . ...+...+.+...-.......... . +-.++.....++.+.-+-.+..
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 2222222221211111 11 1 111111111111111111111111 1 1134556677777777777899
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 535 VFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 535 ~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
.++|.+.|.+.+..++.....+.++..+++..+=++
T Consensus 163 llaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 163 LLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888888765433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=61.84 Aligned_cols=178 Identities=15% Similarity=0.064 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhc-cCcchHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQ-VLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVS-KGLSITAVRKIMQS 467 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~-~~~~~~~~~~~~~~ 467 (579)
++...+..++....+..+..-.-.|+++ ..+-+....|++.+...++.++++++.|+...|.+. |+.++.+. ++..
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~--ii~~ 113 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSF--LIAI 113 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHH--HHHH
Confidence 4445555555555444444444456655 246677889999999999999999999999999885 44443322 2222
Q ss_pred HHHHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 468 IGFLGPAFFLTQLSHVR-TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 468 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
++-+ +.+......+ ..++++++-++.+.+.+.....-........+++|.++++.......+|.++||.+...+..
T Consensus 114 ~g~l---lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~ 190 (488)
T KOG2325|consen 114 IGNL---LYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP 190 (488)
T ss_pred HHHH---HHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence 2222 2211111222 33444444333333322222222223333456778888888777777777777766544432
Q ss_pred c-------------CChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 547 R-------------GSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 547 ~-------------~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
. .-|...-++.+++.++.+++..+.-
T Consensus 191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f 229 (488)
T KOG2325|consen 191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFF 229 (488)
T ss_pred hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence 1 1255666777777777666655543
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.01 Score=60.67 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=76.3
Q ss_pred HHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Q 008070 412 PTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVL 491 (579)
Q Consensus 412 p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (579)
..|.++.|| +...+-++..++.+..+...+.+-|+.||+|-|.....+. ...+++..+=.+..... ..+..+. -
T Consensus 68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt--~ln~iGa~Ir~iss~p~-v~~~f~~--~ 141 (480)
T KOG2563|consen 68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT--VLNGIGAWIRLISSLPF-VPPLFRR--P 141 (480)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH--HHHHHHHHHhhhccCcc-ccccchh--h
Confidence 345666677 6667778888888999999999999999999985433221 11122211111111000 0022221 1
Q ss_pred HHHHHhhhhhhhhhhhh-----hhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008070 492 CMACSQGSDAFSQSGLY-----SNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG 548 (579)
Q Consensus 492 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~ 548 (579)
+...+....+...+... ....-+++++|+.+..+..+...+|.+++.++...+..+.
T Consensus 142 l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 142 LTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred hhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 12222222222222111 1223368899999999998988999999988888777653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.092 Score=46.53 Aligned_cols=110 Identities=14% Similarity=0.026 Sum_probs=65.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGL 507 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (579)
.-.++......+..++.+.+.+++|.|+.+ .++.+...+..........+.+.....+.+.+.........
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm---------~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSM---------ILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 344556667778888889999999998433 33333333333222233333333444444444433333333
Q ss_pred hhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 508 YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 508 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
..+.+...++.+++..|+...+...+.++|..+.-.+..
T Consensus 112 ~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444556788999999888888888888776655543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.12 Score=53.13 Aligned_cols=161 Identities=9% Similarity=0.012 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHh-hCCChhhhhHHhHHHH-HHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccc
Q 008070 407 LLTWMPTYYNQV-LKFNLTESGLFCVLPW-LTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVR 484 (579)
Q Consensus 407 ~~~~~p~~l~~~-~g~s~~~~g~~~~~~~-~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (579)
...++..|+.+. .|++..+..--..+.+ =..++.-+....+.|.++.|.+++.+ +++.+..-. ++.. ..
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~------~~~~i~t~~-lll~--~~ 92 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQ------ALSYIITWL-LLLF--GT 92 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHH-HHHH--HC
Confidence 345778888876 7999888764433333 34445556777889999988644322 122121111 1111 22
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Q 008070 485 TPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR--GSWDDVFKVAVVLYI 562 (579)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~--~g~~~~~~~~~~~~~ 562 (579)
.....-+.-++.+.....-..-...+-..+++++--++.+.......+|..++..++-.+... .+|.....+..+...
T Consensus 93 sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~ 172 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS 172 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 233332222222222222222222334456788878888888888888888888888777763 677778777777777
Q ss_pred HHHHHHHHhhcCcc
Q 008070 563 IGTLVWNLFATGER 576 (579)
Q Consensus 563 l~~~~~~~~~~~~~ 576 (579)
++.++.+++.+.+|
T Consensus 173 ~a~~~~~fLP~~~~ 186 (412)
T PF01770_consen 173 LALLIALFLPMPKR 186 (412)
T ss_pred HHHHHHHHcCCCCc
Confidence 77777777665443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.2 Score=52.97 Aligned_cols=152 Identities=15% Similarity=0.087 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----ChhhhhHHhHHHHHHHHHH-HHHHHHHhhhhhccCcchHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKF-----NLTESGLFCVLPWLTMAVF-ANMGGWIADTLVSKGLSITAV 461 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~-----s~~~~g~~~~~~~~~~~ig-~~~~g~l~dr~g~~~~~~~~~ 461 (579)
++++...+..|+..+.++.. --++|.++. +.+...++.....+...+. .++.+++++|+++++++....
T Consensus 7 ~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 34455555555554444332 234555544 3356677766665655555 788999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc------------------------hhHHHHHHHHHHhhhhhhhhh-hhhhhccc-cC
Q 008070 462 RKIMQSIGFLGPAFFLTQLSHVR------------------------TPAMAVLCMACSQGSDAFSQS-GLYSNHQD-IG 515 (579)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ 515 (579)
....... ++.++.+......- ..|...+++...-..+..... ..+....+ ..
T Consensus 82 ~~F~~~f--~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t 159 (472)
T TIGR00769 82 SPFLGFF--ALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT 159 (472)
T ss_pred HHHHHHH--HHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111111 11111111111000 011222222222222233332 34444444 55
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 516 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQ 546 (579)
Q Consensus 516 ~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~ 546 (579)
+++..+.+++.....++|..+++.+..++.+
T Consensus 160 ~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 160 IDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999999999999988873
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.2 Score=51.23 Aligned_cols=29 Identities=10% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhhchhhHHHHHHhcc
Q 008070 261 LPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289 (579)
Q Consensus 261 ~~~ll~~r~l~Gig~g~~~~~~~~~i~~~ 289 (579)
+...++.-.+.+++.+..........++.
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~ 145 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLF 145 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcC
Confidence 45566777788888887777777766654
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.45 Score=46.39 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCh--hhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHH
Q 008070 402 WGTFILLTWMPTYYNQVLKFNL--TESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQ 479 (579)
Q Consensus 402 ~~~~~~~~~~p~~l~~~~g~s~--~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (579)
..........+.+..+ .+.+. ...++......+...++.++.|.+.||+|+|+....+... .....+....
T Consensus 16 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~------~~~~~~~~~~ 88 (338)
T COG0477 16 LDLGLLSPALPLLLST-LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL------FLLGTLLLAL 88 (338)
T ss_pred HhcchHHHHHHHHHHH-cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH------HHHHHHHHHh
Confidence 3334444556666666 44444 4678888888888888889999999999888443322110 1111111111
Q ss_pred hhccchhHHHHHHHH-HHhhhhhhhhhhhhhhc-cccCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHHHhc--CChHHH
Q 008070 480 LSHVRTPAMAVLCMA-CSQGSDAFSQSGLYSNH-QDIGP-RYAGVLLGLSNT-AGVLAGVFGTAATGYILQR--GSWDDV 553 (579)
Q Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~g~~~g~~~~-~~~lg~~ig~~l~g~l~~~--~g~~~~ 553 (579)
.. ....+....... .+.+.. ...+...... +..++ +.++...+.... ...++..+++.+.+.+... .+|+..
T Consensus 89 ~~-~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 89 AP-NVGLALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred Cc-cchHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11 112222222222 222222 2333333333 33333 478888888888 5778888888777777664 567775
Q ss_pred HHHHHHHH
Q 008070 554 FKVAVVLY 561 (579)
Q Consensus 554 ~~~~~~~~ 561 (579)
+.......
T Consensus 167 ~~~~~~~~ 174 (338)
T COG0477 167 FLLAALLG 174 (338)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.46 Score=46.83 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=49.1
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhccc
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWI 290 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~ 290 (579)
++.+.+..++|-|++++++...+......--. + .+..++-...+.|++.+..+..--+++++.-
T Consensus 76 m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~-p--r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g 139 (390)
T KOG3097|consen 76 MFMPLLIRFLGTKWTMVLAVFPYALYIAANLE-P--RYETLVPAGLVLGMAAGPIWASKGTYLTPMG 139 (390)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-h--hHHhhccHHHhhccccccccccCcceecHHH
Confidence 67778999999999999988877665443222 2 4678889999999999988877766666554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.17 Score=39.51 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCc
Q 008070 401 NWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGL 456 (579)
Q Consensus 401 ~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~ 456 (579)
..+-+.+...+|...++ .+++..+.+++.+...++..+|.+...++.++..+++.
T Consensus 5 GigRFayTplLP~M~~~-~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~ 59 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQAD-GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL 59 (85)
T ss_pred hhHHHHHHhHhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 44556677788887777 79999999999999999999999999998887655543
|
Note that many members are hypothetical proteins. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.38 Score=49.52 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=57.6
Q ss_pred hhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 255 VAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 320 (579)
Q Consensus 255 ~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l 320 (579)
+.+ +.|.+++.-+..|+..|..+......+.+-.++++|..++|....+-++|.+++.+++-.+
T Consensus 331 fip--si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 331 FIP--SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred Hhh--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445 6788888999999999999999999999999999999999999999999999999887665
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0044 Score=66.91 Aligned_cols=171 Identities=11% Similarity=0.076 Sum_probs=1.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 008070 402 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS 481 (579)
Q Consensus 402 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
....++....-.-+++.++++..++|++.+..-++.++..++..++.+|..|.+++-.+. ++.+++.++.++--....
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~--~~~~~g~~l~~lPhf~~~ 93 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGA--LLMGLGSLLFALPHFLSG 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecH--HHHHHHHHHHhccHhhcC
Confidence 333444333333455669999999999999999999999999999998877666654443 444444433322111110
Q ss_pred c---------------------------------------cc----hhHHHHH-HHHHHhhhhhhhhhhhhhhccccCCC
Q 008070 482 H---------------------------------------VR----TPAMAVL-CMACSQGSDAFSQSGLYSNHQDIGPR 517 (579)
Q Consensus 482 ~---------------------------------------~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (579)
. .. ..+++++ -++.|.+...........+-+.++++
T Consensus 94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~ 173 (539)
T PF03137_consen 94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK 173 (539)
T ss_dssp ----------------------------------------------------------SSS-------------------
T ss_pred CCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc
Confidence 0 00 0111111 12223333333333333344457788
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHhhcC
Q 008070 518 YAGVLLGLSNTAGVLAGVFGTAATGYILQRG----------------------SWDDVFKVAVVLYIIGTLVWNLFATG 574 (579)
Q Consensus 518 ~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~----------------------g~~~~~~~~~~~~~l~~~~~~~~~~~ 574 (579)
..+...|+..++..+|-++|-.++|.+...+ .|...|++.+++.++..+.++.+.|+
T Consensus 174 ~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 174 NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 8999999999999999988888888766421 25555666777777777766666543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.35 Score=53.31 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh----
Q 008070 406 ILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS---- 481 (579)
Q Consensus 406 ~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 481 (579)
++....-.-+++.++++..+.|++...+-++..+..++..+...|..|.+++-.+. ++.+++.++.++--....
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~--~~m~lgsll~alPHf~~~~y~~ 191 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGL--VLMGLGSLLFALPHFFSGPYEY 191 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeech--hHHHHHHHHHhChHHhcCcchh
Confidence 44444444556679999999999999999999999999999999988887766554 444444333322100000
Q ss_pred -----------c---------------------------c-ch-hH-HHHHH-HHHHhhhhhhhhhhhhhhccc-cCCCc
Q 008070 482 -----------H---------------------------V-RT-PA-MAVLC-MACSQGSDAFSQSGLYSNHQD-IGPRY 518 (579)
Q Consensus 482 -----------~---------------------------~-~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 518 (579)
. . +. ++ ++++. ++.|.+.. ...+.-..+.++ +.+++
T Consensus 192 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T-pi~tlGisYiDDnvk~~~ 270 (735)
T KOG3626|consen 192 ELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT-PIFTLGISYIDDNVKKKN 270 (735)
T ss_pred hhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC-CCccCCCccccccccccC
Confidence 0 0 00 12 11122 22233332 233333344444 55678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHHHHHHHHHHHHHHHhhcCc
Q 008070 519 AGVLLGLSNTAGVLAGVFGTAATGYILQRG-------------------SWDDVFKVAVVLYIIGTLVWNLFATGE 575 (579)
Q Consensus 519 ~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~-------------------g~~~~~~~~~~~~~l~~~~~~~~~~~~ 575 (579)
....+|+..++..+|-++|-++++++...+ -|...|++++++.++..+.++.+.++.
T Consensus 271 SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l 346 (735)
T KOG3626|consen 271 SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKEL 346 (735)
T ss_pred CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 899999999999999999998888887531 256667888888888888887776543
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.085 Score=54.25 Aligned_cols=154 Identities=11% Similarity=0.024 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh----hhccCcchHHHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT----LVSKGLSITAVRK 463 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr----~g~~~~~~~~~~~ 463 (579)
..+..+....+...+++..=..+++.|+++ .|.+....+.+..+.-+.+.+.+++.|..+|| +||||.++.....
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 344555555666666666667899999999 79999999999888889999999999999995 7888876543221
Q ss_pred HHHHHHHHHHHHH--H--HHhhccch--hHHHHHHHHHHh----hhhhhhhhhhhh-hccccCCCchhH-HHHHHHHHHH
Q 008070 464 IMQSIGFLGPAFF--L--TQLSHVRT--PAMAVLCMACSQ----GSDAFSQSGLYS-NHQDIGPRYAGV-LLGLSNTAGV 531 (579)
Q Consensus 464 ~~~~~~~~~~~~~--~--~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~g~-~~g~~~~~~~ 531 (579)
. ..+++.+.... + .+...... ....+....+++ ..........-+ ......++++-+ +++++.++..
T Consensus 111 ~-i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 L-IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred H-HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHH
Confidence 1 11111111111 0 00001111 112222222222 222222222223 333344444555 8999999999
Q ss_pred HHHHHHHHHHHH
Q 008070 532 LAGVFGTAATGY 543 (579)
Q Consensus 532 lg~~ig~~l~g~ 543 (579)
+|+.+|-.+.++
T Consensus 190 vGnvLGY~~g~y 201 (498)
T KOG0637|consen 190 VGNVLGYALGSY 201 (498)
T ss_pred hcceeeeecccc
Confidence 999888777663
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.88 Score=49.11 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cccCcchHHHHhhHHHHHHHH
Q 008070 265 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QKFGWPSVFYSFGSLGSIWFA 342 (579)
Q Consensus 265 l~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~-~~~gwr~~f~i~~~~~li~~~ 342 (579)
+..-++.++..|+..|....+..+.. .++-++..|.......+|.++|.++.+++. ..+|-..+.++.+.+.+++.+
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445667777777777766665433 234567788889999999999999888765 467765555555555544443
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.8 Score=47.19 Aligned_cols=177 Identities=12% Similarity=0.063 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-hccCcchHHHHHHHHHHHHH
Q 008070 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFL 471 (579)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 471 (579)
.+....+-..+++++..-+-.|+...++.+...+.-.............+++++++|-+ ||.+.+.++. .+..+++.
T Consensus 42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s--~i~~~G~~ 119 (571)
T KOG1237|consen 42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS--LISLLGLF 119 (571)
T ss_pred HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHH
Confidence 34444455556666667778888888898887777777777777777788999999976 5554444332 22222222
Q ss_pred HHHHHHHHhhc---------c-------chh---HHHHHHHHHHhhhhhhhhhhhhhhccccC---C-C--chhHHHHHH
Q 008070 472 GPAFFLTQLSH---------V-------RTP---AMAVLCMACSQGSDAFSQSGLYSNHQDIG---P-R--YAGVLLGLS 526 (579)
Q Consensus 472 ~~~~~~~~~~~---------~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~--~~g~~~g~~ 526 (579)
+..+....... . ... .+...+..+..+.++.-+.....-.+.++ + + ....-+..+
T Consensus 120 ~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~ 199 (571)
T KOG1237|consen 120 GLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWF 199 (571)
T ss_pred HHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHH
Confidence 21111111100 0 111 11111112222222222222222222233 2 2 334777888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 527 NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 527 ~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.+..++|..++..+.-++-+..||...|.+..++.+++.++++..
T Consensus 200 yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g 244 (571)
T KOG1237|consen 200 YFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPG 244 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcC
Confidence 888999999999999998889999999999988888887776654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.15 Score=39.19 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHH
Q 008070 203 PKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWW 246 (579)
Q Consensus 203 ~~~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~ 246 (579)
-....++++..+..+...++.+++|.++||+++++.++....++
T Consensus 32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34678899999999999999999999999999998877766544
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.1 Score=46.99 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=77.5
Q ss_pred HHHhhhhhhhhhhh---hhcCCcHHHHHHHHHHHHHHHHHHhhhcc----------------CHHHHHHHHHHHHhhhhc
Q 008070 217 LLCNMDRIVGGIWA---DKFGGKPVLGFGVIWWSVATVLTPVAARI----------------GLPFLLIMRAFMGIGEGV 277 (579)
Q Consensus 217 ~~~~l~~~~~G~l~---Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~----------------~~~~ll~~r~l~Gig~g~ 277 (579)
.+..++..+.+.+. +++|+++++.++.++..++.++.-+.... ++...++..+++|++.+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 33444445555555 45799999999999888888775543210 245678889999999999
Q ss_pred hhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 278 AMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 320 (579)
Q Consensus 278 ~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l 320 (579)
.....+.++.+.. +++|..+.++...-..++..++-......
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999 68899999998888888877766555443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.9 Score=42.99 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQ 466 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~ 466 (579)
+-.++.+++..+.....+..+.+-.+.|..+..+.+. .-.+.....+.+.+..++...+--+...|.....+. .+.
T Consensus 17 ~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~--~l~ 92 (406)
T KOG1479|consen 17 NLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGY--LLS 92 (406)
T ss_pred ccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3344555555555556666777777777666444443 333333444444444444444433333331111111 111
Q ss_pred HHHHHHHHHHHHHh-----hccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008070 467 SIGFLGPAFFLTQL-----SHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 467 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
...++......+.. ......+...+......++.+.....+.......|+++....++=.+..+.+.+..- .+.
T Consensus 93 ~~~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G~a~aG~l~Sl~~-i~t 171 (406)
T KOG1479|consen 93 LIAILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSGQALAGTLTSLLR-ILT 171 (406)
T ss_pred HHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhcchhHhHHHHHHH-HHH
Confidence 11111111111111 111223444555566666677777888888888888876555544333333332222 222
Q ss_pred HHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Q 008070 542 GYILQR--GSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 542 g~l~~~--~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
-+..+. .+-..-|.+..++.+++.+++..
T Consensus 172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 172 KAAFSDSRTSALIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred HHhcCCCCceeehhHHHHHHHHHHHHHHHHH
Confidence 222222 34444566666677777777663
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.9 Score=45.48 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 260 GLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPIL 320 (579)
Q Consensus 260 ~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l 320 (579)
+-+..++..++.|+..|.....++.+..+..+++||..+-.+...+..+|..+|..++-.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778899999999999999999999999999999999999999999999888776443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.029 Score=56.30 Aligned_cols=113 Identities=9% Similarity=0.011 Sum_probs=1.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhhh-hccCcchHHHHHHHHHHHHHHHHHHH-----HHhhccchhHHHHHHHHHHhhhhh
Q 008070 428 LFCVLPWLTMAVFANMGGWIADTL-VSKGLSITAVRKIMQSIGFLGPAFFL-----TQLSHVRTPAMAVLCMACSQGSDA 501 (579)
Q Consensus 428 ~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 501 (579)
.++..++++-.+|+.+.++..-+. .+|.+........+. +-+....-.- ......+.++.++..++++..-+.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~f-iPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy 264 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLF-IPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHH-HHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence 346678899999999887643221 233222211111111 1111111000 000111223333333333333333
Q ss_pred hhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008070 502 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAAT 541 (579)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~ 541 (579)
.....+....+.++++++..+-.+..+.-.+|-.+|..+.
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp --HHHH----------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556677776666666666666766666544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.57 Score=48.31 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=49.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 516 PRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 516 ~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
++.+...+..+....++|..++..+.+++.++.||...|.+.++..+++.+.++.-++
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 3567788889999999999999999999999999999999999999988887766543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.09 E-value=1.1 Score=42.98 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 008070 414 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM 493 (579)
Q Consensus 414 ~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (579)
|+-+.+|+...++|.++.......++...+.|-++||.|||+.-+ ..++..++..+. -+.+.+-+..+.=
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracv------tycitYiLsCiT----KhSpqYkVLmVGR 131 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACV------TYCITYILSCIT----KHSPQYKVLMVGR 131 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhcccccee------eehHHHHHHHHh----hcCCceEEEeehh
Confidence 445568999999999888777777777788899999999997432 222222222221 1222233333333
Q ss_pred HHHhhhhhhhhhhhhh--hccccCC-----CchhHHHHHHH-HHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHH
Q 008070 494 ACSQGSDAFSQSGLYS--NHQDIGP-----RYAGVLLGLSN-TAGVLAGVFGTAATGYILQR--GSWDDVFKVAVVLYII 563 (579)
Q Consensus 494 ~~~~~~~~~~~~~~~~--~~~~~~~-----~~~g~~~g~~~-~~~~lg~~ig~~l~g~l~~~--~g~~~~~~~~~~~~~l 563 (579)
.+++..........-. +.+...+ +-....++=.. +...+-++++...+-.+.|. .|....|-..+.+..+
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai 211 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI 211 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 3444444443333332 2222212 22223333222 33344555666666667776 4556667666666666
Q ss_pred HHHHHHH
Q 008070 564 GTLVWNL 570 (579)
Q Consensus 564 ~~~~~~~ 570 (579)
+..+.+-
T Consensus 212 gmAvil~ 218 (454)
T KOG4332|consen 212 GMAVILS 218 (454)
T ss_pred HHHHHHh
Confidence 6555443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.2 Score=34.74 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF 263 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ 263 (579)
.....++.+..++++.++.+...++.++..+++.+..+.+...+..+.+++.+ +.+.
T Consensus 26 ~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~--~~~~ 82 (85)
T PF06779_consen 26 LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH--SFWL 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh--chHH
Confidence 45668899999999999999999999998889999999999999999999998 5543
|
Note that many members are hypothetical proteins. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.37 E-value=7.1 Score=39.51 Aligned_cols=172 Identities=12% Similarity=0.117 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHH
Q 008070 389 PVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSI 468 (579)
Q Consensus 389 ~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 468 (579)
..+.+.+.+++..++--...+-...|+.+..|-+....+....+-....++...+.|...|+..|.|.+.... .+--+
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L--~lqNl 105 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWL--LLQNL 105 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHH--hhccH
Confidence 3344556666666666667777778888765644555555555555556666667788889999988765432 22222
Q ss_pred HHHHHHHHHH-Hhhcc-----chhHHHHHHHHHHhhhhhhhhhhhhh--h----------ccccCCCchhHHHHHHHHHH
Q 008070 469 GFLGPAFFLT-QLSHV-----RTPAMAVLCMACSQGSDAFSQSGLYS--N----------HQDIGPRYAGVLLGLSNTAG 530 (579)
Q Consensus 469 ~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~g~~~g~~~~~~ 530 (579)
..++.+..+. .+.+. ..+ +...++.+.............+ . .+.-++......++.....-
T Consensus 106 Sv~vagglvi~~l~~~~~~~~t~p-v~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iD 184 (503)
T KOG2601|consen 106 SVIVAGGLVITLLVHKDLKSATSP-VFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGID 184 (503)
T ss_pred HHHHHHHHHhhheeecchhccccc-HHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhh
Confidence 2222222221 11121 222 2222222222222221111111 1 11112333344446666667
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 008070 531 VLAGVFGTAATGYILQRGSWDDVFKVAVVLYII 563 (579)
Q Consensus 531 ~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l 563 (579)
.....+.|.+.|.+....+.+..-.+.++-.++
T Consensus 185 q~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 185 QSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred hhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 778899999999999988777655444444444
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.01 E-value=23 Score=35.56 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=22.7
Q ss_pred HHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh
Q 008070 414 YYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADT 450 (579)
Q Consensus 414 ~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr 450 (579)
......|-+..+.+.+.+.+...+.+|+.+.-++.|.
T Consensus 33 LatyLlG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd 69 (508)
T COG4262 33 LATYLLGGGILQTSLIIAGYLAAMGLGSLLSRYVLDD 69 (508)
T ss_pred HHHHhcCCceeehHHHHHHHHHHhchhhhhhccccCc
Confidence 3333355566677777777666677777666655543
|
|
| >PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length | Back alignment and domain information |
|---|
Probab=87.70 E-value=18 Score=33.76 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=26.1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHH
Q 008070 292 VSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSL 336 (579)
Q Consensus 292 ~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~ 336 (579)
.+++.+.-.......-++.++|.++++++.+..+. +..++.+++
T Consensus 157 ~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~~-~al~~~~~~ 200 (209)
T PF06912_consen 157 GKDRALRRALRYLLIILSFFIGAILGALLYRRLGF-WALLLPALL 200 (209)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 34433444555566666777777788887777774 344444333
|
The function of this family is unknown although a few members are thought to be membrane proteins. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.87 E-value=19 Score=36.83 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhh-----hhhccCcch
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD-----TLVSKGLSI 458 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~d-----r~g~~~~~~ 458 (579)
+.+..+...+.+...-..... .+|.+++. .|.+-+..+......+=. ---+++..++| |+||||..+
T Consensus 31 ~~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhcccccee
Confidence 445555555665555554444 88988885 577777666543332211 12345666777 999998544
|
|
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=81.76 E-value=13 Score=43.93 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 008070 531 VLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 531 ~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~ 567 (579)
..|+++|..+...+...+|.....+++.++.++++++
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIGLiL 177 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTL 177 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3477777777777777767666666555555555444
|
|
| >PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.62 E-value=37 Score=32.70 Aligned_cols=25 Identities=8% Similarity=-0.302 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008070 394 IISHFCHNWGTFILLTWMPTYYNQV 418 (579)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~p~~l~~~ 418 (579)
.+...+.....++....=..|+++.
T Consensus 184 G~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 184 GIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred hHHHHHHHHHHHhcccchHHHHHhC
Confidence 3344444555666665556677764
|
The region concerned is approximately 280 residues long. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.96 E-value=14 Score=37.41 Aligned_cols=118 Identities=10% Similarity=0.132 Sum_probs=65.3
Q ss_pred hhhhhhhhhhhcCCcHHHHHHHHHHHHHHHH------HHhhhc----cCHHHHHHHHHHHHhhhhch----hhHHHHHHh
Q 008070 222 DRIVGGIWADKFGGKPVLGFGVIWWSVATVL------TPVAAR----IGLPFLLIMRAFMGIGEGVA----MPAMNNMLS 287 (579)
Q Consensus 222 ~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll------~~~a~~----~~~~~ll~~r~l~Gig~g~~----~~~~~~~i~ 287 (579)
..++.|.+.|+..|+|++...+.+.=++.++ .-+... .+++++..+-++.-...+.. ......+-.
T Consensus 79 lg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~R 158 (503)
T KOG2601|consen 79 LGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIER 158 (503)
T ss_pred hHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecc
Confidence 3377888999999999887776654333332 222221 13344444433332222211 111111223
Q ss_pred ccc----CcCchhHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHH
Q 008070 288 KWI----PVSERSRSL---AFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSI 339 (579)
Q Consensus 288 ~~~----~~~~r~~~~---g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li 339 (579)
||. ..+.+.... +.....-..-.++.|++.|.+++..+-|..-.+.++..++
T Consensus 159 DWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 159 DWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred cEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 343 233344433 5555555666789999999999988888766666666555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 8e-61
Identities = 62/375 (16%), Positives = 128/375 (34%), Gaps = 15/375 (4%)
Query: 213 FSAFLLC-NMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVA--ARIGLPFLLIMRA 269
S + + + G +D+ + L G+I + + A + + ++
Sbjct: 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 127
Query: 270 FMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQKFGWPS 328
G +G+ P + W ER ++ +G + L + W +
Sbjct: 128 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHA 187
Query: 329 VFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEA-----VSVIPWKL 383
Y + +P+ EE ++ +++A I +
Sbjct: 188 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQY 247
Query: 384 ILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANM 443
+L +W + I++ + +L W PTY +V F L +S L +
Sbjct: 248 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 307
Query: 444 GGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFS 503
GW++D + T V + + A + ++ P + ++CM
Sbjct: 308 CGWMSDKVFRGNRGATGVFF----MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGP 363
Query: 504 QSGLYSNHQDIGPRYA-GVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKVAVVLY 561
+ + ++ P+ A G G + G L G V +A GY + WD F V +
Sbjct: 364 VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423
Query: 562 IIGTLVWNLFATGER 576
I+ ++ + GE+
Sbjct: 424 ILAVILLIVVMIGEK 438
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 53/362 (14%), Positives = 116/362 (32%), Gaps = 56/362 (15%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
+ G +D+ G +PV+ G+ + +AT++ + + + L+ A G+G GV
Sbjct: 53 LFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTV--LIAASAMQGMGTGVGG---- 106
Query: 284 NMLSKWIP--VSERSRSLAFVYSGMYLGSVTGLA--VSPI----LIQKFGWPSVFYS--- 332
++++ +P + ER++ L S L ++ ++P+ L + W + +
Sbjct: 107 -VMARTLPRDLYERTQ-LRHANS--LLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162
Query: 333 FGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWA 392
+ + A W+ PE R + + +K + +
Sbjct: 163 LCAGVTFSMARWM----------PETRPVDAPR---------TRLLTSYKTLFGNSGFNC 203
Query: 393 LIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLV 452
++ G VL + + +LP G W A
Sbjct: 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF----GAWFAGRPN 259
Query: 453 SKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQ 512
+ ++ I + G ++ V ++ A S
Sbjct: 260 KRFSTLMWQSVICCLLA--GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAM 317
Query: 513 DIGPRYAGVLLGLSNTAGVLAGVF---GTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 569
+ P AG TAG L G G+ + + +++ ++G L+
Sbjct: 318 EPFPFLAG-------TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVL 370
Query: 570 LF 571
+
Sbjct: 371 CW 372
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 29/153 (18%), Positives = 56/153 (36%), Gaps = 10/153 (6%)
Query: 224 IVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAM 282
+GG AD+ G +P + +G + + ++ +A G L + IG G P +
Sbjct: 72 TIGGFVADRIIGARPAVFWGGVLIMLGHIV--LALPFGASALFGSIILIIIGTGFLKPNV 129
Query: 283 NNMLSKWIPVSERSRSLAFV--YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFG---SLG 337
+ ++ +R R F G+ LG+ + + G+ F +G
Sbjct: 130 STLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIG 189
Query: 338 SIWFALWLKK--AYSSPKEDPELRAEEKRHILG 368
+ + KK + L EE + +L
Sbjct: 190 LLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 5e-04
Identities = 70/485 (14%), Positives = 131/485 (27%), Gaps = 175/485 (36%)
Query: 64 EHANRSMLHVWGNSDEKALKHIANCHTGKEHPLFLQCNEKFNRIY----PWKRTNNKCEC 119
++ + +L V+ E A +C ++ P + E+ + I T
Sbjct: 15 QYQYKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 120 YFSSRHS-----LGGWFQPKAE---DRIGTRKGKSPQSLDVKE-----DRIC----AFYK 162
S + + + + I T + + P S+ + DR+ F K
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQP-SMMTRMYIEQRDRLYNDNQVFAK 128
Query: 163 SDEYDIT-EAKVDSLQS--TEI-PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLL 218
Y+++ L+ E+ P++ VL DG L K WV + +C S +
Sbjct: 129 ---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--------SGKTWVALDVCLSYKVQ 177
Query: 219 CNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLL--IMRAFMGIGEG 276
C MD F + W ++ +P L LL I + +
Sbjct: 178 CKMD------------------FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 277 VAMPAMN------------------NML-------SKW----------IPVSERSRSLAF 301
+ + N L + I ++ R + +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 302 VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361
++ + I + +L P++ P
Sbjct: 280 F--------LSAATTTHISLDHHSMT--LTPDEVKS--LLLKYLD---CRPQDLPR---- 320
Query: 362 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKF 421
E ++ P LS II+ + L TW + V
Sbjct: 321 ------------EVLTTNP--RRLS-------IIAESIRDG----LATW--DNWKHVNCD 353
Query: 422 NLT---ESGL--------------FCVLP---WLTMAVFANMGGW----------IADTL 451
LT ES L V P + + + + W + + L
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKL 411
Query: 452 VSKGL 456
L
Sbjct: 412 HKYSL 416
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 20/187 (10%), Positives = 57/187 (30%), Gaps = 8/187 (4%)
Query: 385 LSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMG 444
L W + F + + + P + + + + +++G+ L +F +
Sbjct: 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63
Query: 445 GWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAV---LCMACSQGSDA 501
G ++D L + + + ++ F L + V C
Sbjct: 64 GLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAP 123
Query: 502 FSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLY 561
++ + + + G + G + G + G + + + +
Sbjct: 124 AVEAFIEKVSRRSNFEF-----GRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178
Query: 562 IIGTLVW 568
I+ L++
Sbjct: 179 ILAVLLF 185
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.9 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.37 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.27 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.27 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.26 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.19 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.11 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.76 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=297.09 Aligned_cols=357 Identities=14% Similarity=0.176 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh----hhccCHHHHHHHHHHHHhhhhchhhHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV----AARIGLPFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~----a~~~~~~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
+.++.+...++..++.+++|+++||+|||++++++.++.+++.+++++ ++ +++.++++|+++|++.+...+...
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~ 141 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCG 141 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHH
Confidence 466677778888888999999999999999999999999999999999 88 889999999999999999999999
Q ss_pred HHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccC-cchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHH
Q 008070 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFG-WPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEE 362 (579)
Q Consensus 284 ~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~g-wr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~ 362 (579)
+++.|++|+++|++++++...+..+|.+++|++++++.+..| ||+.|++.+++.++..++.++..+++++.....+.++
T Consensus 142 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (451)
T 1pw4_A 142 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE 221 (451)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT
T ss_pred HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh
Confidence 999999999999999999999999999999999999888898 9999999998888877777777776654322111000
Q ss_pred Hhh-----hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHH
Q 008070 363 KRH-----ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTM 437 (579)
Q Consensus 363 ~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~ 437 (579)
... ......++........+.+++++.++.+.+..++..+..+.+..++|.|+++.+|+++.+.+++.+...++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 222 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp TCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000 000000011111122467788999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHhhhh--hccCcchHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHhhhhhhhhhhhhhhcccc
Q 008070 438 AVFANMGGWIADTL--VSKGLSITAVRKIMQSIGFLGPAFFLTQLSHV-RTPAMAVLCMACSQGSDAFSQSGLYSNHQDI 514 (579)
Q Consensus 438 ~ig~~~~g~l~dr~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (579)
+++.++.|++.||+ ++|+.+..+ ........+.+...... +.+......+..+.+.............+..
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 375 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVF------FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA 375 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHH------HHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHH------HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh
Confidence 99999999999999 887543211 11111122222222221 2233333333344333333333334455667
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhh
Q 008070 515 GPRYAGVLLGLSNTAGVL-AGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 515 ~~~~~g~~~g~~~~~~~l-g~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
|++.+|+++|+.+.+..+ |..++|.+.|.+.+..||...|++.+++.+++.++.++..
T Consensus 376 ~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 376 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999 9999999999999999999999999988888877766653
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-31 Score=278.31 Aligned_cols=334 Identities=10% Similarity=0.080 Sum_probs=252.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHH---HhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLT---PVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~---~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
+.++.+...++..++.+++|+++||+|||++++++.++.+++.+++ ++++ +++.+++.|++.|++.+...+...+
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~ 140 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANP 140 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 3455555666666777999999999999999999999999999999 7888 8999999999999999999999999
Q ss_pred HHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cccC-------------------------cchHHHHhhHHHH
Q 008070 285 MLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILI-QKFG-------------------------WPSVFYSFGSLGS 338 (579)
Q Consensus 285 ~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~-~~~g-------------------------wr~~f~i~~~~~l 338 (579)
++.|++|+++|++++++.+.+..+|.+++|++++++. +..+ ||+.|++.+++.+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 220 (438)
T 3o7q_A 141 FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVL 220 (438)
T ss_dssp HHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 5554 9999988887776
Q ss_pred HHHHHHHhh-hcCCCCCChhhcHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 008070 339 IWFALWLKK-AYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTY-YN 416 (579)
Q Consensus 339 i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~-l~ 416 (579)
+..++.++. .|+.+++.++ .+++.....++++++++|.++...+..++.......+..++|.| ++
T Consensus 221 ~~~~~~~~~~~p~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (438)
T 3o7q_A 221 LVALLIMLTKFPALQSDNHS-------------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVE 287 (438)
T ss_dssp HHHHHHHHCCCCCCTTTCCC-------------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccccc-------------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 665554443 2222211100 00111223457788999999999999999988899999999999 88
Q ss_pred HhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 008070 417 QVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACS 496 (579)
Q Consensus 417 ~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (579)
+.+|++..+++++.....++.+++.++.|++.||+++|+.+..+. .+......+. .........+.....+
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~g 358 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYA-------LIAMALCLIS--AFAGGHVGLIALTLCS 358 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------HHHHHHHHHH--HHCCHHHHHHHHHHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH-------HHHHHHHHHH--HHcCCcHHHHHHHHHH
Confidence 878999999999999999999999999999999999996543221 1111111111 1122333333334444
Q ss_pred hhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHH
Q 008070 497 QGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS-WDDVFKVAVVLYIIGTLV 567 (579)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g-~~~~~~~~~~~~~l~~~~ 567 (579)
.+.....+.......+..+++ ++++.++.. ...+++.++|.+.|.+.+..| +...|.+.+++.++..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 444333333333335555544 888888877 678999999999999999987 998888776665554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-30 Score=264.35 Aligned_cols=326 Identities=13% Similarity=0.107 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNM 285 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~ 285 (579)
..+.++.+...+...++.+++|+++||+|||++++++.++.+++.+++++++ +++.+++.|++.|++.+...+...++
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~ 112 (375)
T 2gfp_A 35 GAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGMGTGVGGVMARTL 112 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3467788888888999999999999999999999999999999999999998 89999999999999999999999999
Q ss_pred HhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHhh
Q 008070 286 LSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRH 365 (579)
Q Consensus 286 i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~~ 365 (579)
+.|++|+++|++++++...+..+|.+++|.+++++.+..+||+.|++.+++.++..++..+..||++++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 185 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR------- 185 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-------
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-------
Confidence 9999999999999999999999999999999999999889999999988887776665555555544322111
Q ss_pred hhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHH
Q 008070 366 ILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGG 445 (579)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g 445 (579)
+....++++++++|.++...+..++.......+..+.|.|+++.+|+++.+.+++.....++.+++.++.+
T Consensus 186 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 186 ---------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp ---------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123456688899999999999999999999999999999998899999999999999999999999999
Q ss_pred HHhhhhhccCcchHHHHHHHHHHHH-HHHHHH--HHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhccccCCCchhH
Q 008070 446 WIADTLVSKGLSITAVRKIMQSIGF-LGPAFF--LTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDIGPRYAGV 521 (579)
Q Consensus 446 ~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 521 (579)
++.||++++ . ...... ...+.. ..........+.. ......+.+. ....+.......+..|+++|+
T Consensus 257 ~l~~r~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~g~ 326 (375)
T 2gfp_A 257 RPNKRFSTL-M--------WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFPFLAGT 326 (375)
T ss_dssp TTTTHHHHH-H--------HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHHHHHHH
T ss_pred HHHHHHHHH-H--------HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCCcccch
Confidence 999999872 1 111111 111111 1111011122322 2233333333 333334344333333489999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008070 522 LLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVV 559 (579)
Q Consensus 522 ~~g~~~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~ 559 (579)
+.|+.+....+|..++|.+.|.+.+..++...+.+.++
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999988788777766443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=257.32 Aligned_cols=363 Identities=12% Similarity=0.111 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh-cCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHH
Q 008070 206 WVVVLLCFSAFLLCNMDRIVGGIWADK-FGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNN 284 (579)
Q Consensus 206 ~~v~~l~~~~~~~~~l~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~ 284 (579)
..+.++.+...++..++.+++|+++|| +|||++++++.++.+++.+++++++ +++.+++.|+++|++.+...+...+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~ 131 (491)
T 4aps_A 54 ATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGTGFLKPNVST 131 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhccchHHH
Confidence 445677777888888889999999999 8999999999999999999999998 8899999999999999999999999
Q ss_pred HHhcccCcCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC-----hh
Q 008070 285 MLSKWIPVSE--RSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED-----PE 357 (579)
Q Consensus 285 ~i~~~~~~~~--r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~-----~~ 357 (579)
+++|++|+++ |+.++++++.+.++|.+++|++++++.+..|||+.|++.++..++..++.++..++..++. .+
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4aps_A 132 LVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDP 211 (491)
T ss_dssp HHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCC
T ss_pred HHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCc
Confidence 9999999988 7788888999999999999999999999999999999987777666555554433221110 00
Q ss_pred hcHHHHhh-hh-------------------cCCcccc---------------------cccchhHHHHhhchHHHHHHHH
Q 008070 358 LRAEEKRH-IL-------------------GGSISKE---------------------AVSVIPWKLILSKAPVWALIIS 396 (579)
Q Consensus 358 ~~~~~~~~-~~-------------------~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~l~ 396 (579)
...++... .. +.....+ +..........+....+.+.+.
T Consensus 212 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 212 LAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp CSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 01111111 00 0000000 0000000111122234455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHH
Q 008070 397 HFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFF 476 (579)
Q Consensus 397 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 476 (579)
.++....+.....++|.|..+..+.+....+++.....++.+++.++.+++.||+++|+...... +.....+...++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~--~~~~~~~~~~~~~ 369 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTK--FAVGLMFAGLSFL 369 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHH--HHHHHHHHHHHHH
Confidence 55566666667778899999878888778888899999999999999999999999986543110 1111111111111
Q ss_pred HHHhh--------ccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008070 477 LTQLS--------HVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRG 548 (579)
Q Consensus 477 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~ 548 (579)
+.... ..+..+......+.+.+.....+.......+..|++.||++.|+.+....+|.++++.+.+.+.+.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~- 448 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK- 448 (491)
T ss_dssp TTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 11110 112233333333334443333444444455667889999999999999999999999999988765
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhc
Q 008070 549 SWDDVFKVAVVLYIIGTLVWNLFAT 573 (579)
Q Consensus 549 g~~~~~~~~~~~~~l~~~~~~~~~~ 573 (579)
++...|.+.+++.+++.++.++..+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 449 SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777777666655543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=245.39 Aligned_cols=364 Identities=16% Similarity=0.154 Sum_probs=240.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHh------------------hhccCHHHHHH
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPV------------------AARIGLPFLLI 266 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~------------------a~~~~~~~ll~ 266 (579)
.....++.+..+++..++.+++|+++||+|||++++++.+++.++.+++++ ++ +++.+++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~ 131 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVI 131 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHH
Confidence 456677888888999999999999999999999999999999999999984 66 8999999
Q ss_pred HHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cCcchHHHHhhHHHH
Q 008070 267 MRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQK--------FGWPSVFYSFGSLGS 338 (579)
Q Consensus 267 ~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~--------~gwr~~f~i~~~~~l 338 (579)
+|+++|++.|...+....+++|+.|+++|++..++.+.+..+|.++++.++..+... ..||+.+.+..+..+
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999988877543 246766666555554
Q ss_pred HHHHHHHhhhcCCCCC-----ChhhcHHHHhhhhcC-----------CcccccccchhHHHHhhchHHHHH-HHHHHHHH
Q 008070 339 IWFALWLKKAYSSPKE-----DPELRAEEKRHILGG-----------SISKEAVSVIPWKLILSKAPVWAL-IISHFCHN 401 (579)
Q Consensus 339 i~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~ 401 (579)
+. ++..+..||+|+. +.+...+..++.... ....+..........++.+..... ....+...
T Consensus 212 ~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (491)
T 4gc0_A 212 LF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQF 290 (491)
T ss_dssp HH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHH
T ss_pred hh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHH
Confidence 44 3444556666531 111100000000000 000000001111222333333333 33333344
Q ss_pred HHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 008070 402 WGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLS 481 (579)
Q Consensus 402 ~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (579)
.+.+.+..+.|.+... .+.+...........++..+++.++.+++.||+|||+....+. ....++++..+. ....
T Consensus 291 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~--~~~~~~~~~l~~--~~~~ 365 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGA--LGMAIGMFSLGT--AFYT 365 (491)
T ss_dssp TCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHH--HHHHHHHHHHHH--HHHT
T ss_pred hhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccch--HHHHHHHHHHHH--HHhc
Confidence 4455566666666665 6878877777778888999999999999999999997655432 111222221111 1111
Q ss_pred ccchhHHHHHHHHHHhhhhhhhhhhh-hhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CChHHHH
Q 008070 482 HVRTPAMAVLCMACSQGSDAFSQSGL-YSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR------GSWDDVF 554 (579)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~------~g~~~~~ 554 (579)
........+..+....+......+.. ....+..|.+.|+++.|+.+.++.+++++++.+.+.+.+. .++...|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 22222222222222222222222233 3344556779999999999999999999999888776543 3556678
Q ss_pred HHHHHHHHHHHHHHHHhhcCcc
Q 008070 555 KVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 555 ~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
++.+++++++.++.+++.++.|
T Consensus 446 ~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHheecCCC
Confidence 8888888888877766655544
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=232.66 Aligned_cols=349 Identities=12% Similarity=0.050 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHH---HHHhhhccCH-HHHHHHHHHHHhhhhchhhHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATV---LTPVAARIGL-PFLLIMRAFMGIGEGVAMPAMN 283 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l---l~~~a~~~~~-~~ll~~r~l~Gig~g~~~~~~~ 283 (579)
++++.+...+...++++++|+++||+|||++++++.++++++.. ...+.+ .. ..++..+++.|++.+...+...
T Consensus 45 ~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~ 122 (417)
T 2cfq_A 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP--LLQYNILVGSIVGGIYLGFCFNAGA 122 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH--HHHTTCCHHHHGGGSSTTHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 36677777888889999999999999999999998887765322 112222 11 1133455565655555444444
Q ss_pred HHHhcccCc--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHH
Q 008070 284 NMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361 (579)
Q Consensus 284 ~~i~~~~~~--~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~ 361 (579)
..+.++.++ ++++..++....+..+|..++|.+++++.+ .+|++.|++.++..++..++.++..|++++..++ .
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 198 (417)
T 2cfq_A 123 PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATV-A-- 198 (417)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCS-S--
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccccccc-c--
Confidence 444444432 456777888888889999999999999887 5899999987776554444433333332211100 0
Q ss_pred HHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChhhhhHHhHHHHHHHH
Q 008070 362 EKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKF---NLTESGLFCVLPWLTMA 438 (579)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~---s~~~~g~~~~~~~~~~~ 438 (579)
++. ..++++.....+++++++|.++...+..++....+..+..++|.|+.+.++. +....+++..+..++.+
T Consensus 199 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 273 (417)
T 2cfq_A 199 NAV-----GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA 273 (417)
T ss_dssp SSS-----SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHH
T ss_pred ccc-----ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Confidence 000 0001111223456788899988877766665556666667789888775542 23455777777778888
Q ss_pred HHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHhhhhhhhhhhhhhhccccCCC
Q 008070 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLC-MACSQGSDAFSQSGLYSNHQDIGPR 517 (579)
Q Consensus 439 ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (579)
++.++.+++.||+++|+.+..+ . ++.++.+.........+..++. .+.+.+.............+..|++
T Consensus 274 ~~~~~~g~l~dr~g~~~~l~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~ 344 (417)
T 2cfq_A 274 SIMFFAPLIINRIGGKNALLLA-------G--TIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH-------H--HHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHH-------H--HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 9999999999999998654321 1 1111111111122222222222 2222222222222233344556778
Q ss_pred chhHHHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 008070 518 YAGVLLGLS-NTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGER 576 (579)
Q Consensus 518 ~~g~~~g~~-~~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~ 576 (579)
.+|++.++. +....+|++++|.+.|++.+..|+...|.+.+++.+++.++.+...+++|
T Consensus 345 ~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999984 78888999999999999999888999999988888888776655544433
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.98 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhc-CCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHH
Q 008070 208 VVLLCFSAFLLCNMDRIVGGIWADKF-GGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNML 286 (579)
Q Consensus 208 v~~l~~~~~~~~~l~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i 286 (579)
+.++.....++..++.+++|+++||+ |||++++++.++.+++.+++++++. +++.+++.|++.|++.+...+...+++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~ 134 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFM 134 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHHH
Confidence 46667777788888999999999999 9999999999999999999888752 578899999999999999999999999
Q ss_pred hcccCcCchhHHHHH---HHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhh
Q 008070 287 SKWIPVSERSRSLAF---VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKK 347 (579)
Q Consensus 287 ~~~~~~~~r~~~~g~---~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~ 347 (579)
.|++|+++|+++.+. ...+.++|.+++|.+++++.+..||++.|++.+++.++..++.++.
T Consensus 135 ~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 135 GDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999876666 9999999999999999999998999999999888776655554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-11 Score=127.20 Aligned_cols=176 Identities=10% Similarity=0.073 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCCChhhhhHHhHHHHHHHHHHHHHHHHHhhh-hhccCcchHHH
Q 008070 388 APVWALIISHFCHNWGTFILLTWMPTYYNQV-----LKFNLTESGLFCVLPWLTMAVFANMGGWIADT-LVSKGLSITAV 461 (579)
Q Consensus 388 ~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr-~g~~~~~~~~~ 461 (579)
+.++.+.+..++..+.++....+++.|+.+. +|++..+.+++.+...++..++.++.|+++|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4567777788888888899999999999998 89999999999999999999999999999999 89997544321
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCc--hhHHHHHHHHHHHHHHHHHHH
Q 008070 462 RKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRY--AGVLLGLSNTAGVLAGVFGTA 539 (579)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~ig~~ 539 (579)
.+...+..+... ..+...+.+..++.+.+.....+.......+..++++ |+.++++.+....+|..++|.
T Consensus 93 -------~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 93 -------VLIMLGHIVLAL-PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp -------HHHHHHHHHHHS-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 111111111111 2223333333344444444444444444555567777 788899899999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 540 ATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 540 l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
+++.+.+..||+..|++.+++.+++.+++++.
T Consensus 165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888877777666554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=125.16 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=126.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC------CChhhhhHHhHHHHHHHHHHHHHHHHHhhhh-hccCcchH
Q 008070 387 KAPVWALIISHFCHNWGTFILLTWMPTYYNQVLK------FNLTESGLFCVLPWLTMAVFANMGGWIADTL-VSKGLSIT 459 (579)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g------~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~-g~~~~~~~ 459 (579)
++.++.+.+..++..++++....+++.|+.+.+| ++..+.+++.+...++..++.++.|+++||+ |+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4556677788888888888899999999998889 9999999999999999999999999999999 99975443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHH---HHHHHHHHHHH
Q 008070 460 AVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGL---SNTAGVLAGVF 536 (579)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~i 536 (579)
+. .+...+..+......+.+.+.+..++.+.+.....+.......+.+++++|+++.++ .+....+|..+
T Consensus 91 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 91 LS-------LIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163 (524)
T ss_dssp HH-------HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111111111111233333333344444434444444445566777888766665 88999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Q 008070 537 GTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNL 570 (579)
Q Consensus 537 g~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~ 570 (579)
+|.+.|.+.+..||+..|.+.+++.+++.+++++
T Consensus 164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776665544
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-11 Score=123.20 Aligned_cols=181 Identities=12% Similarity=-0.022 Sum_probs=125.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHH
Q 008070 386 SKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIM 465 (579)
Q Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~ 465 (579)
+.+.++...+..++.......+..++|.+.++ + .+..+.+++.+...++..++.++.|+++||+|+|+.+..+. .+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~--~~ 101 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--IL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH--HH
Confidence 34455666666666666666677788887777 6 89999999999999999999999999999999997654332 11
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008070 466 QSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL 545 (579)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~ 545 (579)
..++.++..+.... ..+.+.+.+..++.+.+.....+.......+..++++|++++|+.+....+|..++|.+++++.
T Consensus 102 ~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111110000 1222233333334444443344444444556677799999999999999999999999999999
Q ss_pred hcCC-hHHHHHHHHHHHHHHHHHHHHhh
Q 008070 546 QRGS-WDDVFKVAVVLYIIGTLVWNLFA 572 (579)
Q Consensus 546 ~~~g-~~~~~~~~~~~~~l~~~~~~~~~ 572 (579)
+..| |+..|++.+++.++..++.++..
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888 99999999888777666554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.5e-10 Score=119.02 Aligned_cols=175 Identities=10% Similarity=0.055 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHH
Q 008070 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIG 469 (579)
Q Consensus 390 ~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 469 (579)
++.+.+..++..+........+|.+.++ +|.+..+.+++.+...++..++.++.|+++||+|||+.+..+. .+..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~--~~~~~~ 104 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL--FLYALG 104 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH--HHHHHH
Confidence 4445555555666666666777776555 8999999999999999999999999999999999997654432 111111
Q ss_pred HHHHHHHHHHhhccchhHHHH-HHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 008070 470 FLGPAFFLTQLSHVRTPAMAV-LCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYIL-QR 547 (579)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~-~~ 547 (579)
.++.. ........+..+ ..++.+.+.....+.......+..++++|++++|+.+....+|..++|.+++.+. +.
T Consensus 105 ~~~~~----~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 105 AALFW----PAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHH----HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHH----hccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11110 002223333333 3344444444444444444556678899999999999999999999999999998 65
Q ss_pred CC-------------------------hHHHHHHHHHHHHHHHHHHHHh
Q 008070 548 GS-------------------------WDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 548 ~g-------------------------~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
.+ |+..|++.+++.++..+++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 8889888777766666555544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=119.08 Aligned_cols=168 Identities=11% Similarity=0.007 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHH
Q 008070 391 WALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGF 470 (579)
Q Consensus 391 ~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 470 (579)
+.+.+..++.......+...+|.+.++ +|.++.+.+++.+...++..++.++.|+++||+|||+.+..+. ....++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~--~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM--SIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH--HHHHHHH
Confidence 345556666666777777778877665 8999999999999999999999999999999999999876543 2222222
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHhhhhhhhhhh-hhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008070 471 LGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSG-LYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGS 549 (579)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~~g 549 (579)
+.... .++.+...+...+.+.......+. .....+..++++|++++++.+....+|..++|.+.+++.+..|
T Consensus 80 ~~~~~-------~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 80 LVAVT-------TSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHH-------hccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 11111 123333333333333333333333 3334455677999999999999999999999999999998889
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 008070 550 WDDVFKVAVVLYIIGTLVW 568 (579)
Q Consensus 550 ~~~~~~~~~~~~~l~~~~~ 568 (579)
|+..|.+.+++.++..++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999998888777665533
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=119.43 Aligned_cols=130 Identities=9% Similarity=0.049 Sum_probs=109.5
Q ss_pred hhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHH
Q 008070 220 NMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSL 299 (579)
Q Consensus 220 ~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~ 299 (579)
.++.++.|+++||+|||+++.++.++.+++.++.++.+ +.+.+++..++.+++.+...+....++.|.+|++.|+.+.
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 350 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 34458889999999999999999988888887777776 7777888888888887777777889999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCC
Q 008070 300 AF-VYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSS 351 (579)
Q Consensus 300 g~-~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~ 351 (579)
++ ++....+|..++|.++|++.+..|+...|.+.+++.++..++.++..+++
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 98 48888899999999999999888999999988888777766666555543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=9.7e-08 Score=100.92 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=101.2
Q ss_pred HHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhh--ccCHHHHHHHHHHHHhh-hhchhhHHHHHHhcccCcC
Q 008070 217 LLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAA--RIGLPFLLIMRAFMGIG-EGVAMPAMNNMLSKWIPVS 293 (579)
Q Consensus 217 ~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~--~~~~~~ll~~r~l~Gig-~g~~~~~~~~~i~~~~~~~ 293 (579)
+...++.++.+++.||+|||+.++.+.....++.+..+... ....+..++.-++...+ .....+....+.+|.+|.+
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~ 402 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 402 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence 34445558899999999999999999988888777655432 11222222222222222 2224467778999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhc------ccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCC
Q 008070 294 ERSRSLAFVYSGMYLGSVTGLAVSPILIQ------KFGWPSVFYSFGSLGSIWFALWLKKAYSSPKED 355 (579)
Q Consensus 294 ~r~~~~g~~~~~~~lG~~lgp~i~~~l~~------~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~ 355 (579)
.|+.++|+......+|.++++.+.+.+.+ ..++.+.|++.++++++..++.+++.||+..+.
T Consensus 403 ~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 403 IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 99999999999999999999888766543 356788899999999888888888888776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 579 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-24 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 1e-04 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 9e-10 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-04 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 103 bits (258), Expect = 2e-24
Identities = 70/440 (15%), Positives = 141/440 (32%), Gaps = 54/440 (12%)
Query: 182 PSEAVLPDGDLQETSPWWEQFPKRWVVVLLCFSAFLLCNMDR------------------ 223
P +A LP ++ T RW + L F + + R
Sbjct: 5 PHKARLPAAEIDPTYRRL-----RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRG 59
Query: 224 -----------------IVGGIWADKFGGKPVLGFGVIWWSVATVLTPV--AARIGLPFL 264
+ G +D+ + L G+I + + A + +
Sbjct: 60 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVM 119
Query: 265 LIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYLGS-VTGLAVSPILIQK 323
++ G +G+ P + W ER ++ +G + L +
Sbjct: 120 FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179
Query: 324 FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSV----- 378
W + Y + +P+ EE ++ +++A
Sbjct: 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 239
Query: 379 IPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMA 438
I + +L +W + I++ + +L W PTY +V F L +S L
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299
Query: 439 VFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQG 498
+ GW++D + T + + + A + ++ P + ++CM
Sbjct: 300 PGTLLCGWMSDKVFRGNRGAT----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355
Query: 499 SDAFSQSGLYSNHQDIGP-RYAGVLLGLSNTAGVLAG-VFGTAATGYILQRGSWDDVFKV 556
+ + ++ P + AG G + G L G V +A GY + WD F V
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415
Query: 557 AVVLYIIGTLVWNLFATGER 576
+ I+ ++ + GE+
Sbjct: 416 MIGGSILAVILLIVVMIGEK 435
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 4/169 (2%)
Query: 197 PWWEQFPKRWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWS---VATVLT 253
+ F ++ G +DK GV + + +AT++
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335
Query: 254 PVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAFVYSGMYL-GSVT 312
+ +I +G + + + P + F YL GSV
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395
Query: 313 GLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAE 361
A+ + FGW F + L + + +L E
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 58.6 bits (140), Expect = 9e-10
Identities = 40/357 (11%), Positives = 92/357 (25%), Gaps = 13/357 (3%)
Query: 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMN 283
+ G+ +DK G + L + + V + L I+ + G +
Sbjct: 61 PLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNA 120
Query: 284 NMLSKWIPVSERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFAL 343
+ + + SR F + + G A+ ++ + + F L
Sbjct: 121 GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL 180
Query: 344 WLKKAYSSPKEDPELRAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWG 403
+ ++ + S + + + L ++ + + C
Sbjct: 181 AVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGV--SCTYDV 238
Query: 404 TFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRK 463
T + + G + L A I K
Sbjct: 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLI---------INRIGGK 289
Query: 464 IMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGP--RYAGV 521
+ + + S + V+ F G + A +
Sbjct: 290 NALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI 349
Query: 522 LLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERVL 578
L LA +F + G + + + + V ++ + TL+ +G L
Sbjct: 350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 3e-04
Identities = 19/182 (10%), Positives = 56/182 (30%), Gaps = 2/182 (1%)
Query: 390 VWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIAD 449
W + F + + + P + + + + +++G+ L +F + G ++D
Sbjct: 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD 68
Query: 450 TLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCMACSQGSDAFSQSGLYS 509
L + + + + F F+ + + G + +
Sbjct: 69 KLGLRKYLLWII--TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVE 126
Query: 510 NHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWN 569
+ R + G + G + G + G + + + + I+ L++
Sbjct: 127 AFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFF 186
Query: 570 LF 571
Sbjct: 187 AK 188
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 579 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.28 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.22 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-31 Score=279.91 Aligned_cols=344 Identities=15% Similarity=0.196 Sum_probs=256.5
Q ss_pred hhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhhhhchhhHHHHHHhcccCcCchhHHHHH
Q 008070 224 IVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAAR--IGLPFLLIMRAFMGIGEGVAMPAMNNMLSKWIPVSERSRSLAF 301 (579)
Q Consensus 224 ~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~--~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~~~~~~r~~~~g~ 301 (579)
+++|+++||+|||++++++.++.+++.+++++++. .+++.+++.|++.|++.+...+...+++.|++|+++|++++++
T Consensus 77 ~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 156 (447)
T d1pw4a_ 77 FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV 156 (447)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccc
Confidence 89999999999999999999999999998887641 1578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-cCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhhcHHHHh-----hhhcCCccccc
Q 008070 302 VYSGMYLGSVTGLAVSPILIQK-FGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPELRAEEKR-----HILGGSISKEA 375 (579)
Q Consensus 302 ~~~~~~lG~~lgp~i~~~l~~~-~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 375 (579)
...+..+|.++++++++.+... .+||+.|++.+++.++..++.++..++.|+.......++.+ ......+.+..
T Consensus 157 ~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (447)
T d1pw4a_ 157 WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELT 236 (447)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------C
T ss_pred cccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccc
Confidence 9999999999999999887765 47999999999988888887777777665433221111110 00011111222
Q ss_pred ccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccC
Q 008070 376 VSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKG 455 (579)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~ 455 (579)
......+..++++.++......++.....+....+.|.|+.+.++++..+.+.......++.+++.++.|++.||+++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 237 AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred hhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc
Confidence 23345667788999999999999999999999999999999989999999999999999999999999999999999876
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH-HHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHH-H
Q 008070 456 LSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMAVLCM-ACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVL-A 533 (579)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g 533 (579)
..... .....+................+...++. ..+.+.............+..|++.+|++.|+.+.+.++ |
T Consensus 317 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 317 RGATG----VFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp HHHHH----HHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccccc----chhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 43321 11122222222222222233333333333 333333333333333455567789999999999998887 4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 008070 534 GVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLF 571 (579)
Q Consensus 534 ~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~ 571 (579)
..++|.+.|++.|..||...|.+.+++.+++.++..++
T Consensus 393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988887777766655544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.9e-22 Score=204.13 Aligned_cols=353 Identities=12% Similarity=0.035 Sum_probs=229.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHH----HHHHHHHHHhhhhchhh
Q 008070 205 RWVVVLLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPF----LLIMRAFMGIGEGVAMP 280 (579)
Q Consensus 205 ~~~v~~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~----ll~~r~l~Gig~g~~~~ 280 (579)
...++++.++..+...+.++++|+++||+|||++++++.++..++.++..+.. +... .++.+++.+.+.+....
T Consensus 42 ~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (417)
T d1pv7a_ 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI--FGPLLQYNILVGSIVGGIYLGFCFN 119 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT--HHHHHHTTCHHHHHHTTTTGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHhhhccccccc
Confidence 45678888888999999999999999999999999999999999888887776 3332 34555665655555555
Q ss_pred HHHHHHhcccCc--CchhHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCCCChhh
Q 008070 281 AMNNMLSKWIPV--SERSRSLAFVYSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPKEDPEL 358 (579)
Q Consensus 281 ~~~~~i~~~~~~--~~r~~~~g~~~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~~~~~~ 358 (579)
.......+..++ +++.+..+........+..+++.+++.+.+ .+|++.+........+..++.++..++.+....+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (417)
T d1pv7a_ 120 AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA 198 (417)
T ss_dssp THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS
T ss_pred chhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccchhhHHHHHHHHHHHHhcccccchhhh
Confidence 555544444432 345567788888889999999999998877 45666666666666666666666666555444333
Q ss_pred cHHHHhhhhcCCcccccccchhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhhHHhHHHHH
Q 008070 359 RAEEKRHILGGSISKEAVSVIPWKLILSKAPVWALIISHFCHNWGTFILLTWMPTYYNQ---VLKFNLTESGLFCVLPWL 435 (579)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~l~~---~~g~s~~~~g~~~~~~~~ 435 (579)
++++.. ++..........++++..+....................+.+... ..+.+....+.......+
T Consensus 199 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (417)
T d1pv7a_ 199 NAVGAN--------HSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270 (417)
T ss_dssp HHHHSC--------CCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhh--------cccccccccccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhccccccccc
Confidence 222211 111112233344455555555444444444444444444443332 123345566777777788
Q ss_pred HHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHhhhhhhhhhhhhhhcccc
Q 008070 436 TMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPAMA-VLCMACSQGSDAFSQSGLYSNHQDI 514 (579)
Q Consensus 436 ~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (579)
+..++..+.+++.||.++++.... +.++..+........+..+.. +...+.+.+.....+.......+..
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 341 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLL---------AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHH---------HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccchhhhhhhhcccccccchhh---------hHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 888999999999999999864332 112222222222223333333 3333344444444444444456667
Q ss_pred CCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 008070 515 GPRYAGVLLGLSN-TAGVLAGVFGTAATGYILQRGSWDDVFKVAVVLYIIGTLVWNLFATGERV 577 (579)
Q Consensus 515 ~~~~~g~~~g~~~-~~~~lg~~ig~~l~g~l~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 577 (579)
|++.+|++.|+.. ....+|.+++|.+.|++.|..|++..|++.+++.+++.++..+..++++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 8899999999864 55679999999999999999999999999998888887777666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.1e-11 Score=122.41 Aligned_cols=142 Identities=10% Similarity=0.041 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHhhhhchhhHHHHHHhcc
Q 008070 210 LLCFSAFLLCNMDRIVGGIWADKFGGKPVLGFGVIWWSVATVLTPVAARIGLPFLLIMRAFMGIGEGVAMPAMNNMLSKW 289 (579)
Q Consensus 210 ~l~~~~~~~~~l~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~ll~~~a~~~~~~~ll~~r~l~Gig~g~~~~~~~~~i~~~ 289 (579)
.......+...++.++.+++.||+|+|+++.++.++.+++.++.++.+ +.+.+++..++.|++.+...+...+++.|.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 340 (417)
T d1pv7a_ 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566668999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred cCcCchhHHHHHH-HHHHHHHHHHHHHHHHHhhcccCcchHHHHhhHHHHHHHHHHHhhhcCCCC
Q 008070 290 IPVSERSRSLAFV-YSGMYLGSVTGLAVSPILIQKFGWPSVFYSFGSLGSIWFALWLKKAYSSPK 353 (579)
Q Consensus 290 ~~~~~r~~~~g~~-~~~~~lG~~lgp~i~~~l~~~~gwr~~f~i~~~~~li~~~l~~~~~~~~~~ 353 (579)
+|+++|+++.++. .....+|..++|.++|++.+.+||++.|++.+++.++..++.++..+++.+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9999999999985 456789999999999999999999999999998888877777776654433
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=9.5e-11 Score=119.67 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhCCChhhhhHHhHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 008070 408 LTWMPTYYNQVLKFNLTESGLFCVLPWLTMAVFANMGGWIADTLVSKGLSITAVRKIMQSIGFLGPAFFLTQLSHVRTPA 487 (579)
Q Consensus 408 ~~~~p~~l~~~~g~s~~~~g~~~~~~~~~~~ig~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (579)
....| ++++ +|++..+.|++.+...++..++.++.|+++||+|||+.+..+. .+..++.++.+.. .....+...
T Consensus 45 ~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~ 118 (447)
T d1pw4a_ 45 ALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL--ILAAAVMLFMGFV--PWATSSIAV 118 (447)
T ss_dssp HHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHHHHHHHHHHHC--HHHHSSSSH
T ss_pred HHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH--HHHHHHHhhcccc--chhhhhHHH
Confidence 33344 5555 7999999999999999999999999999999999997655432 1111111111111 111122233
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHH
Q 008070 488 MAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQR-GSWDDVFKVAVVLYIIGTL 566 (579)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~ig~~l~g~l~~~-~g~~~~~~~~~~~~~l~~~ 566 (579)
..+..++.+.+.....+.......+..++++|++++|+.+....+|..+++.+.+.+.+. .+|+..+++.+++.++..+
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHH
Confidence 333334444444444444444566667889999999999999999999999999987775 5789888888877777666
Q ss_pred HHHHhhc
Q 008070 567 VWNLFAT 573 (579)
Q Consensus 567 ~~~~~~~ 573 (579)
+.+...+
T Consensus 199 ~~~~~~~ 205 (447)
T d1pw4a_ 199 FAFAMMR 205 (447)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 6655543
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