Citrus Sinensis ID: 008102

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
Protein Sequence
MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEELEEPWFQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHHHHHccccHccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHcccccHHccccccccHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccHHHHEEEHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MVMDPLLYEAAAkgeiepfkEISNVLGRvvthnnkntilHVNIISRDRETIVSTEFVEQILEMCPSLLQsvnakgdaplhvaakcGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIkedpavpystngcgetplymAAERGFEKMLTEILEncpsvahegpsgktALHAAAVNINSIDVVKLLLDKKKsligetdrygwtplhyasyfDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPeccelvdgrgwNVLHFAMVSFDASDLKHLLNNYPIVRNLIndkdkegntpLHLLAALCRdsfhrivpwnvggdyqavnkqniSVKHITRYGFPQLEQEIRELSKyigsgqypegvvSMRENKIVKRtshwkfidenyigmkeASEFHLVVATLIATVAFSaaftlpggnksegspdQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKAdeeleepwfq
Flexible Loop (DISEMBL)
MVMDPLLYEAAAKGEIEPFKEISNVLGrvvthnnkntilhvniisrdreTIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSligetdrygwtpLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGsgqypegvvsmrenkiVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEeleepwfq
Low Complexity Region (SEG)
MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINsidvvkllldkkksliGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIflfafalfftlvamaammvafvtGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEELEEPWFQ
Disordered region (IsUnstruct)
******LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIA************************************RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLP*************AILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLS************
Disordered Region (DISOPRED)
MVMDPLLYEAAAKGEIEPFKEISNVLGR**THNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMR***********************ASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEELEEPWF*
Disordered Region (DISEMBL)
MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKK************ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGG********QGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKAD*********
Disordered Region (DISPRO)
MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEELEE**F*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADEELEEPWFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	577	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.781	0.764	0.253	2e-22
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.818	0.900	0.255	4e-21
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.483	0.142	0.288	2e-16
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.564	0.612	0.257	6e-16
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.469	0.192	0.281	4e-15
Q5F478	990	Serine/threonine-protein	no	no	0.493	0.287	0.300	1e-14
Q8N8A2	993	Serine/threonine-protein	no	no	0.497	0.289	0.291	2e-14
B2RXR6	993	Serine/threonine-protein	no	no	0.497	0.289	0.288	1e-13
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.459	0.060	0.287	1e-13
Q25338	1214	Delta-latroinsectotoxin-L	N/A	no	0.452	0.214	0.274	8e-13

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 132/520 (25%), Positives = 225/520 (43%), Gaps = 69/520 (13%)

Query: 106 ESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE------------------- 146
           ++G +   +Q+ G  ND   T LH A Q   L  V+ ++K+                   
Sbjct: 59  QAGKKKYVKQVTGRHND---TELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVA 115

Query: 147 --DPAVPYSTNGCGETPLYMAAERGFEKMLTEILE--NCPSVAHEGPSGKTALHAAAVNI 202
               ++    N  GET L+ AA++G   ++ E+L+  +  S+A +  SG   LH AA+  
Sbjct: 116 EIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQG 175

Query: 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKM 262
           +   +V++LLD   +L         TPL  A+      +   LL+   +L  I  ++ K 
Sbjct: 176 HHA-IVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK- 233

Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
            ALHLAA QG + V++ ++S  P+    +D +G   LH A+    +  +K LL+  P + 
Sbjct: 234 NALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAI- 292

Query: 323 NLINDKDKEGNTPLHLLAALCRDSFHRI---VPWNVGGDYQAVNKQNISVKH-------- 371
             +   DK  NT LH+     R     +   +P          +K  + +          
Sbjct: 293 --VMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEES 350

Query: 372 ------ITRYG------FPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFID 419
                 + R G        Q   E+R     I +  + +   + R NK V   S  +   
Sbjct: 351 SYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISK-ELRK 409

Query: 420 ENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVIS 479
            +  G+  A+    VVA L ATVAF+A FT+PGG+ ++GS     A++  +A+F+ F I 
Sbjct: 410 LHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGS-----AVVVGRASFKIFFIF 464

Query: 480 DAIAMALSLSAVFVYFIL---SLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAML- 535
           +A+A+  SL+ V V   L     KA +  + +    ++    A     VAF+  +Y ++ 
Sbjct: 465 NALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWL---ASMCTSVAFLASSYIVVG 521

Query: 536 -EPSLGLAIVTCIIGLSFF-VLVIFMFYKVLSKADEELEE 573
            +      +VT + G+    VL    +Y V SK    + +
Sbjct: 522 RKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRK 561

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  103 bits (257), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 145/568 (25%), Positives = 252/568 (44%), Gaps = 96/568 (16%)

Query: 19  FKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFV-EQILEMCPSLLQSVNAKGDA 77
            KEI   + + +T    +T LH  +  R+ +T +  E + E        LL   N  G+ 
Sbjct: 1   MKEIKKTMTKQMTARRDDTPLHTAV--REGKTDLLLEMIGEHDGVELKELLAEQNQSGET 58

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN--TALHEAMQHR 135
            L+VAA+ G+    T +++I  K    + +G ++            KN   A H A ++ 
Sbjct: 59  ALYVAAEYGY----TDMVKILMKHSDSVLAGTKA------------KNGFDAFHIAAKNG 102

Query: 136 SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS-GKTA 194
           +L V+ +LI+ +P + ++ +    T L+ AA +G  +++  +L+    +A    S GKTA
Sbjct: 103 NLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTA 162

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY 254
           LH+AA N +++ +VK L++KK  ++   D+ G T LH A       I ++L+ +D SL  
Sbjct: 163 LHSAARNGHTV-IVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLIN 221

Query: 255 IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL 314
             DN +  T LH+A  + +  +V+ ++ YC                              
Sbjct: 222 SADN-KGNTPLHIAVRKNRAEIVQTVLKYC------------------------------ 250

Query: 315 LNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNI-SVKHIT 373
                + R  +N   K G T L +     +   H IVP       Q +  QN  S+K   
Sbjct: 251 ----EVSRVAVN---KSGETALDIAE---KTGLHEIVPL-----LQKIGMQNARSIKPAE 295

Query: 374 RYGFPQLEQEIRELSKYIG---SGQYPEGVVSMRE-NKIVKRTSHWKFIDENYIGMKEAS 429
           +       ++++E    IG     Q  +   + RE   I KR +       +  G+  A 
Sbjct: 296 KVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKM-----HTEGLNNAI 350

Query: 430 EFHLVVATLIATVAFSAAFTLPG---GNKSEGSP--DQGAAILSKQAAFQAFVISDAIAM 484
               +VA LIATVAF+A F +PG    +  +  P    G A  + +  F  FV+ D+ A+
Sbjct: 351 NSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFAL 410

Query: 485 ALSLS---AVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMM--VAFVTGAYAML-EPS 538
            +SL+         ++  +A ++ +     A+   L+ MA +M  VAFV+ ++ ++ E  
Sbjct: 411 FISLAVVVVQTSVVVIERRAKKQMM-----AIINKLMWMACIMISVAFVSLSFVVVGEKE 465

Query: 539 LGLAI-VTCIIGLSFFVLVIFMFYKVLS 565
             LA+ VT I  L     +  M Y V++
Sbjct: 466 KPLAVGVTAIGALIMVSTLGTMCYWVIA 493

Arabidopsis thaliana (taxid: 3702)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 143/309 (46%), Gaps = 30/309 (9%)

Query: 70  SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH 129
           + N +G+  LH+AA+ G A VV  L++   +        VE+ A+        +  T LH
Sbjct: 444 TTNVRGETALHMAARSGQAEVVRYLVQDGAQ--------VEAKAK--------DDQTPLH 487

Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
            + +    D+V+ L+++  A P +    G TPL++AA  G E +   +L++  S++    
Sbjct: 488 ISARLGKADIVQQLLQQG-ASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTK 546

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
            G T LH AA     ++V  LLL K  S      + G TPLH A+++D   +A LLL+  
Sbjct: 547 KGFTPLHVAA-KYGKLEVASLLLQKSAS-PDAAGKSGLTPLHVAAHYDNQKVALLLLDQG 604

Query: 250 KSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDAS 309
            S      N    T LH+AA + ++ +   ++ Y  +    V  +G   +H A       
Sbjct: 605 ASPHAAAKNG--YTPLHIAAKKNQMDIATSLLEYGAD-ANAVTRQGIASVHLAAQEGHV- 660

Query: 310 DLKHLLNNYPIVRNL-INDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNIS 368
           D+  LL    + RN  +N  +K G TPLHL A   R +   ++  N G    A  K   +
Sbjct: 661 DMVSLL----LSRNANVNLSNKSGLTPLHLAAQEDRVNVAEVL-VNQGAHVDAQTKMGYT 715

Query: 369 VKHI-TRYG 376
             H+   YG
Sbjct: 716 PLHVGCHYG 724

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 161/380 (42%), Gaps = 54/380 (14%)

Query: 155 NGCGETPLYMAAERGFEKMLTEILE--NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLL 212
           N  GET +Y++A    E +   ++   +  +V     S   A H AA     + +VK LL
Sbjct: 56  NDAGETAVYISAAENLEDIFRYLIRFSSLETVKIRSKSDMNAFHVAAKR-GHLGIVKELL 114

Query: 213 DKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG 272
                L    D    +PL+ A+  D   I   +L+ D S A IV  + K T+LH A   G
Sbjct: 115 RLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGK-TSLHTAGRYG 173

Query: 273 KLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN-NYPIVRNLINDKDKE 331
            LR+V+ +I        + D +G   LH A+       ++ +L  +Y I    +N++D++
Sbjct: 174 LLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYTI----LNERDRK 229

Query: 332 GNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNIS---------------------VK 370
           GNT LH+     R     ++      +  A+N Q  +                     V+
Sbjct: 230 GNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVE 289

Query: 371 HITRYG-FPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGM-KEA 428
              ++G F   E E R L + +   ++      ++  K  +R S          G+ KE 
Sbjct: 290 AGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVS----------GIAKEL 339

Query: 429 SEFH-----------LVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFV 477
            + H            VVA L A++AF A F LPG   +EGS   G A ++ +  F+ F 
Sbjct: 340 RKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGS-HVGQANIAGRTGFRVFC 398

Query: 478 ISDAIAMALSLSAVFVYFIL 497
           + +A ++ +SL+ V V   L
Sbjct: 399 LLNATSLFISLAVVVVQITL 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 31/302 (10%)

Query: 70  SVNAKGD--APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           +V  K D   PLH+AA+     V   LI+I +         ++  A+   G T       
Sbjct: 561 NVRTKSDLFTPLHLAARRDLTDVTQTLIDITE---------IDLNAQDKSGFT------P 605

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH ++   S +   ILI+   AV    +  G TPL++A  +     ++++L    +  ++
Sbjct: 606 LHLSISSTS-ETAAILIRNTNAVINIKSKVGLTPLHLATLQN-NLSVSKLLAGKGAYLND 663

Query: 188 G-PSGKTALHAAAVNINSIDVVKLLLDKKK-SLIGETDRYGWTPLHYASYFDRNIIAELL 245
           G  +G T LH AA+  N +++V  LL+++  ++   T    WTPLH A  F +N +AE L
Sbjct: 664 GDANGMTPLHYAAMTGN-LEMVDFLLNQQYININAATKEKKWTPLHLAILFKKNDVAERL 722

Query: 246 LNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS 305
           L SD++L   ++ +  +  LHLA+  G  ++V E+++   +   L   +G++ LH  ++ 
Sbjct: 723 L-SDENLNIRLETNGGINPLHLASATGNKQLVIELLAKNADVTRLT-SKGFSALHLGIIG 780

Query: 306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQA--VN 363
            +      L+     V    NDK   G TPLH  A L + +  R++  + G D +A  +N
Sbjct: 781 KNEEIPFFLVEKGANV----NDKTNSGVTPLHFAAGLGKANIFRLL-LSRGADIKAEDIN 835

Query: 364 KQ 365
            Q
Sbjct: 836 SQ 837

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 156/349 (44%), Gaps = 64/349 (18%)

Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + +++A+   PLHVA+  G A ++  LI           SG    A+  + +T       
Sbjct: 34  VNALDAEKRTPLHVASFLGDADIIELLIL----------SGARVNAKDNMWLT------P 77

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A+  RS + V++LIK    V  + +   +TPL++AA     K    I+    SV   
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADV-NARDKNWQTPLHVAAANKALKCAEIIIPMLSSVNVS 136

Query: 188 GPSGKTALHAAAVNINSIDVVKLLL---------DKKKS-----------------LIGE 221
              G+TALH AA+N   +++V LLL         DKK                   LI  
Sbjct: 137 DRGGRTALHHAALN-GHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLEVVALLINH 195

Query: 222 ------TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD--NDRKMTALHLAAGQGK 273
                  D+ G+TPLH A+   +  I + LLN    L   +D  N    TALH+A   G+
Sbjct: 196 GAEVTCKDKKGYTPLHAAASNGQINIVKHLLN----LGVEIDEMNIYGNTALHIACYNGQ 251

Query: 274 LRVVEEIISYCPECCELVDGRGWNVLHFAMVS-FDASDLKHLLNNYPIVRNLINDKDKEG 332
             VV E+I Y     +  +  G+  LHFA  S   A  L+ L+NN   V    N + K+G
Sbjct: 252 DSVVNELIDYGANVNQ-PNNNGFTPLHFAAASTHGALCLELLVNNGADV----NIQSKDG 306

Query: 333 NTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHI-TRYGFPQL 380
            +PLH+ A   R +  + +  N GG+   V+K   +  H+  RYG   L
Sbjct: 307 KSPLHMTAVHGRFTRSQTLIQN-GGEIDCVDKDGNTPLHVAARYGHELL 354

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 156/347 (44%), Gaps = 60/347 (17%)

Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + +++++   PLHVAA  G A ++  LI           SG    A+  + +T       
Sbjct: 34  VNTLDSEKRTPLHVAAFLGDAEIIELLIL----------SGARVNAKDNMWLT------P 77

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A+  RS + V++LIK    V  + +   +TPL++AA     K    I+    SV   
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADV-NARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVS 136

Query: 188 GPSGKTALHAAAV---------------NINS-----------------IDVVKLLLDKK 215
              G+TALH AA+               NIN+                 +DVV LL++  
Sbjct: 137 DRGGRTALHHAALNGHVEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query: 216 KSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR 275
             +  + D+ G+TPLH A+   +  + + LLN    +  I  N    TALH+A   G+  
Sbjct: 197 AEVTCK-DKKGYTPLHAAASNGQINVVKHLLNLGVEIDEI--NVYGNTALHIACYNGQDA 253

Query: 276 VVEEIISYCPECCELVDGRGWNVLHFAMVS-FDASDLKHLLNNYPIVRNLINDKDKEGNT 334
           VV E+I Y     +  +  G+  LHFA  S   A  L+ L+NN   V    N + K+G +
Sbjct: 254 VVNELIDYGANVNQ-PNNNGFTPLHFAAASTHGALCLELLVNNGADV----NIQSKDGKS 308

Query: 335 PLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHI-TRYGFPQL 380
           PLH+ A   R +  + +  N GG+   V+K   +  H+  RYG   L
Sbjct: 309 PLHMTAVHGRFTRSQTLIQN-GGEIDCVDKDGNTPLHVAARYGHELL 354

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 156/347 (44%), Gaps = 60/347 (17%)

Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + +++++   PLHVAA  G A ++  LI           SG    A+  + +T       
Sbjct: 34  VNALDSEKRTPLHVAAFLGDAEIIELLIL----------SGARVNAKDNMWLT------P 77

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A+  RS + V++LIK    V  + +   +TPL++AA     K    I+    SV   
Sbjct: 78  LHRAVASRSEEAVQVLIKHSADV-NARDKNWQTPLHVAAANKAVKCAEVIIPLLSSVNVS 136

Query: 188 GPSGKTALHAAAV---------------NINS-----------------IDVVKLLLDKK 215
              G+TALH AA+               NIN+                 +DVV LL++  
Sbjct: 137 DRGGRTALHHAALNGHMEMVNLLLAKGANINAFDKKDRRALHWAAYMGHLDVVALLINHG 196

Query: 216 KSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR 275
             +  + D+ G+TPLH A+   +  + + LLN    +  I  N    TALH+A   G+  
Sbjct: 197 AEVTCK-DKKGYTPLHAAASNGQISVVKHLLNLGVEIDEI--NVYGNTALHIACYNGQDA 253

Query: 276 VVEEIISYCPECCELVDGRGWNVLHFAMVS-FDASDLKHLLNNYPIVRNLINDKDKEGNT 334
           VV E+I Y     +  +  G+  LHFA  S   A  L+ L+NN   V    N + K+G +
Sbjct: 254 VVNELIDYGANVNQ-PNNSGFTPLHFAAASTHGALCLELLVNNGADV----NIQSKDGKS 308

Query: 335 PLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHI-TRYGFPQL 380
           PLH+ A   R +  + +  N GG+   V+K   +  H+  R+G   L
Sbjct: 309 PLHMTAVHGRFTRSQTLIQN-GGEIDCVDKDGNTPLHVAARHGHELL 354

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 135/296 (45%), Gaps = 31/296 (10%)

Query: 68  LQSVNAKGDAPLHVAAKCGHASVV------------------TALIEIAKKQPKELESGV 109
           +Q+V   G  P+HVAA  GH ++V                  TAL   A+    E+   +
Sbjct: 426 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYL 485

Query: 110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
                Q+     D++ T LH + +    D+V+ L+++  A P +    G TPL+++A  G
Sbjct: 486 VQDGAQVEAKAKDDQ-TPLHISARLGKADIVQQLLQQG-ASPNAATTSGYTPLHLSAREG 543

Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229
            E +   +L++  S++     G T LH AA     ++V  LLL K  S      + G TP
Sbjct: 544 HEDVAAFLLDHGASLSITTKKGFTPLHVAA-KYGKLEVANLLLQKSASPDA-AGKSGLTP 601

Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE 289
           LH A+++D   +A LLL+   S      N    T LH+AA + ++ +   ++ Y  +   
Sbjct: 602 LHVAAHYDNQKVALLLLDQGASPHAAAKNG--YTPLHIAAKKNQMDIATTLLEYGAD-AN 658

Query: 290 LVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL-INDKDKEGNTPLHLLAALCR 344
            V  +G   +H A       D+  LL    + RN  +N  +K G TPLHL A   R
Sbjct: 659 AVTRQGIASVHLAAQEGHV-DMVSLL----LGRNANVNLSNKSGLTPLHLAAQEDR 709

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q25338|LITD_LATTR Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 75.9 bits (185), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 41/302 (13%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALI----EIAKKQPKE--------LESGVESTARQMLGM 119
           +  G  PLH+AA+ G A  V  LI    ++  K  K           SG   T R +L  
Sbjct: 534 DKNGFTPLHIAAEAGQAGFVKLLINHGADVNAKTSKTNLTPLHLATRSGFSKTVRNLLES 593

Query: 120 TN-------DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEK 172
            N       D+  T LH A+    + VV  L+        + +  G TP ++A     ++
Sbjct: 594 PNIKVNEKEDDGFTPLHTAVMSTYM-VVDALLNHPDIDKNAQSTSGLTPFHLAIINESQE 652

Query: 173 MLTEILE-----NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD--KKKSLIGETDRY 225
           +   ++E     N   V H  P     +H AA ++ SI +++ L+    K S+   T+  
Sbjct: 653 VAESLVESNADLNIQDVNHMAP-----IHFAA-SMGSIKMLRYLISIKDKVSINSVTENN 706

Query: 226 GWTPLHYASYFDRNIIA-ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYC 284
            WTPLH+A YF +   A ELL   D +L  + D +  +T LHLA   G++ +++E++   
Sbjct: 707 NWTPLHFAIYFKKEDAAKELLKQDDINLTIVADGN--LTVLHLAVSTGQINIIKELLKRG 764

Query: 285 PECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCR 344
               E   G G+  LH A +  +      L+ N       I  +  +  TPLH  A + R
Sbjct: 765 SNIEEKT-GEGYTSLHIAAMRKEPEIAVVLIENGAD----IEARSADNLTPLHSAAKIGR 819

Query: 345 DS 346
            S
Sbjct: 820 KS 821

Insecticidal toxin that induces massive neurotransmitter release at insect but not vertebrate neuromuscular junctions. Forms cation-permeable pores (with high permeability to calcium) in lipid membranes locust muscle membrane and artificial lipid bilayers. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
255585399	575	ankyrin repeat-containing protein, putat	0.925	0.928	0.459	1e-127
224127106	575	predicted protein [Populus trichocarpa]	0.951	0.954	0.445	1e-122
255551947	582	ankyrin repeat-containing protein, putat	0.863	0.855	0.385	1e-97
296085927	611	unnamed protein product [Vitis vinifera]	0.941	0.888	0.403	1e-95
147805307	603	hypothetical protein VITISV_007868 [Viti	0.944	0.903	0.395	5e-93
359478091	637	PREDICTED: ankyrin-1-like [Vitis vinifer	0.948	0.858	0.407	2e-92
359477893	617	PREDICTED: ankyrin repeat-containing pro	0.944	0.883	0.394	8e-92
298205141	645	unnamed protein product [Vitis vinifera]	0.859	0.768	0.391	2e-91
359477901	622	PREDICTED: ankyrin repeat-containing pro	0.939	0.871	0.391	8e-91
147772498	708	hypothetical protein VITISV_032148 [Viti	0.935	0.762	0.399	1e-90

>gi|255585399|ref|XP_002533395.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223526769|gb|EEF28995.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 258/562 (45%), Positives = 367/562 (65%), Gaps = 28/562 (4%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           LY+AA  G+I+PFK  +  L  +VT   K+TILH+N+ S       ST FV++ L+MCP 
Sbjct: 31  LYKAAEDGKIDPFKNFAGPLDLLVT-PIKDTILHLNLASPSER---STSFVKEALDMCPQ 86

Query: 67  LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
           +L  +NA GD  LH+AA+ GH  +V  LIE  + Q ++LES  E+  RQML MTN  K T
Sbjct: 87  ILLQINADGDTLLHIAARYGHLDIVKLLIEHTRAQHQDLESAGEAV-RQMLRMTNKSKET 145

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
           ALHEA ++   D+V++LI++DP   +S+N  GETPLY+A+ERG  +++  +L+ C S+A+
Sbjct: 146 ALHEAARNDHPDLVELLIEQDPDFVHSSNDFGETPLYLASERGHLEVVVIMLKACTSLAY 205

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
            GP+GKTALHAAA++ +   +V  +LDKK SL+ + D  GWTPLHYA+Y   + + + LL
Sbjct: 206 GGPNGKTALHAAAMHRHG-GIVHAILDKKTSLVNKADEMGWTPLHYAAYIGASRVVKQLL 264

Query: 247 NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306
             DK +AY  D  R+ TALHLAA Q  ++ + EII  CP+CC+LVD RGWNV H+A++S 
Sbjct: 265 GYDKYVAYAADKARRRTALHLAACQANIKSMREIIFKCPDCCKLVDNRGWNVAHYAVISK 324

Query: 307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQN 366
               LK LL N P    L+N+KD +GNTPLHLLAAL   S  R +  +  G   AV +QN
Sbjct: 325 SDDALKILLAN-PSCIYLVNEKDAQGNTPLHLLAAL--QSHPRSLMHHAKGHRFAVYRQN 381

Query: 367 -ISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGM 425
            + +K +     P  ++EI+E  + +G G  P G + ++++  +             +  
Sbjct: 382 FLCIKELLSRS-PCRKKEIQEWMRDLGGG--PLGQIVIKKDDFI-------------LTF 425

Query: 426 KEASEFHLVVATLIATVAFSAAFTLPGGNKS-EGSPDQGAAILSKQAAFQAFVISDAIAM 484
           + A + H+VVA L+ATV F+AAFTLPGG +S +   DQG AIL K +AF+AF+I+DAIAM
Sbjct: 426 ERARDSHIVVAALVATVTFAAAFTLPGGYRSNDDEKDQGVAILGKNSAFKAFLITDAIAM 485

Query: 485 ALSLSAVFVYFILSLKAF-QEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAI 543
            LS S++F++F L+L  + Q F++L  +A    + A+ AM+VAFVTG YA+L PS GLAI
Sbjct: 486 VLSTSSLFIHFTLALHGYRQRFMWLMVYAFRCIVFAIEAMVVAFVTGTYAVLSPSQGLAI 545

Query: 544 VTCIIGLSFFVLVIFMFYKVLS 565
            TC IGLSFF+ V F+  ++ S
Sbjct: 546 STCAIGLSFFIFVFFILTRINS 567

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/593 (44%), Positives = 363/593 (61%), Gaps = 44/593 (7%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILE 62
           MDP+L++AA  G I PF+         +   ++NTILHV + ++  E   ST+FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPDENTILHVYLKNQSSEP-ESTDFVDKFLE 59

Query: 63  MCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTND 122
            CP LL   N +G+ PLH+ A+ GH++VV  LI+ AK  P + ESGV + A+ ML MTN+
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADPESGV-TKAKMMLRMTNE 118

Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF-------EKMLT 175
           E++TALHEA ++R   VV+IL KEDP   Y  N  GETPLY+A   GF        K++ 
Sbjct: 119 EQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKVVD 178

Query: 176 EILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
            IL NC SV + GP G+TALHAA++  N  +  + +L+K+K L   TD  GW+PLHYASY
Sbjct: 179 GILGNCISVDYGGPDGRTALHAASMAAN-YETARKMLEKEKKLTKTTDENGWSPLHYASY 237

Query: 236 FDRN--IIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG 293
            D +   I E+LL  D S A I + ++K TALH+AA QG +  ++EI+S CP CC+LVD 
Sbjct: 238 CDWSNAPIVEVLLEYDASTASIAETEKKRTALHIAAIQGHVDAMKEIVSRCPACCDLVDN 297

Query: 294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFH-RIVP 352
           RGWN LH+A+ S D    K  L   P +  L  +KD +GNTP HL+AAL  +    R V 
Sbjct: 298 RGWNALHYAVASKDTKVFKECL-KIPELARLQTEKDDKGNTPFHLIAALAHEQPEWRYVL 356

Query: 353 WNVGGDYQ-----AVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENK 407
           +N    Y+      +NK+ +SV  I    F ++++EI E     GSG  P G       +
Sbjct: 357 FNDSNGYRKWQIYGLNKRKLSVNDIYEEDFGEIQKEILESLNDGGSG--PLGRRRKVLRR 414

Query: 408 IVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAIL 467
              +        E    + +A E HLVVA LIATV F+AAFTLPGG KS    D+G AIL
Sbjct: 415 GRNK--------EGEDALSKARESHLVVAALIATVTFAAAFTLPGGYKS----DRGTAIL 462

Query: 468 SKQAAFQAFVISDAIAMALSLSAVFVYFILSL-KAF----------QEFIFLFAFALFFT 516
           +K+AAF  FV+SDA++M LS+SAVF++F++SL  AF          +  I LF  A  FT
Sbjct: 463 AKKAAFIVFVVSDAMSMVLSISAVFIHFLISLIHAFEMEKSKDISEEAAIKLFGVATLFT 522

Query: 517 LVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKADE 569
           ++ M  M++AF+TG YA+LEPSLGLAI +C+IGLSFF +V  +F  +L   ++
Sbjct: 523 MIGMGIMIIAFITGTYAVLEPSLGLAISSCLIGLSFFFIVYLVFRIILKDVED 575

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551947|ref|XP_002517018.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223543653|gb|EEF45181.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 320/570 (56%), Gaps = 72/570 (12%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILE 62
           MD  LY+AA +  I   K+ +  L   VT   KNTILH+++ S ++ ++   +FV++ L+
Sbjct: 51  MDAELYKAAVEENINSLKKYAKDLDLQVT-PKKNTILHIHLNSPNKRSV---DFVKEALQ 106

Query: 63  MCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTND 122
           +CPSLL   N+ GDAPLH+AA+ GH  +V  L+E AK Q ++LE+G     +QM  M N+
Sbjct: 107 LCPSLLWKNNSNGDAPLHIAARYGHIDIVKLLLEQAKAQNEDLETG-RGAMKQMWQMQNE 165

Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
           +K+ ALHEA ++  L VV++L + DP   Y  N   ETPLY+AA RG+  ++ EIL  C 
Sbjct: 166 KKDMALHEAARNNHLSVVRLLTRLDPHFLYPANDYEETPLYLAAARGYLYVVIEILNTCK 225

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY-----FD 237
           SVA+ GP GKTALH A ++ N   +V  +L ++K L  E +  GWTPLHYA+Y     F 
Sbjct: 226 SVAYGGPKGKTALHGAVLSGNR-GIVLEILKREKRLTIEAEENGWTPLHYAAYGNDQNFG 284

Query: 238 RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN 297
             +I + LL  DKS AY+VD DRK TALHLAA +G +R+++EIIS CP+CCE+ D RGWN
Sbjct: 285 AYVIVQRLLECDKSAAYVVDKDRKRTALHLAACRGNVRIMKEIISKCPDCCEIADDRGWN 344

Query: 298 VLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGG 357
           VLH+A+VS +   L+ +L N  ++ +L+ND+D +GNTPLHLL A+ R      V ++   
Sbjct: 345 VLHYAVVSKNDEALQVILRNSSLI-DLVNDRDAQGNTPLHLL-AVSRPYLPSFV-FDGED 401

Query: 358 DYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKF 417
           D  A  KQN+  +    +   Q + + +    +   G Y       R+   +        
Sbjct: 402 DLNAFYKQNVLSRDDLIHELLQPKYQQKRQXXFTLPGGYRSDENDPRQGTAI-------- 453

Query: 418 IDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFV 477
                  + ++S F   + T                       D  A +LS  + F    
Sbjct: 454 -------LSKSSAFEAFIIT-----------------------DTIAMVLSTCSVF---- 479

Query: 478 ISDAIAMALSLSAVFVYFILSLKAFQE-FIFLFAFALFFTLVAMAAMMVAFVTGAYAMLE 536
                          ++FI+ L  +QE + +L   AL F + AM AM+VAF TG YA+L 
Sbjct: 480 ---------------IHFIVMLLGYQEKYWWLIRSALLFIMFAMGAMVVAFATGTYAVLS 524

Query: 537 PSLGLAIVTCIIGLSFFVLVIFMFYKVLSK 566
           PSLGLA+ TC IGLSFF+ V +M  ++ S+
Sbjct: 525 PSLGLAVATCFIGLSFFIYVFYMLKRLYSR 554

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085927|emb|CBI31368.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 233/578 (40%), Positives = 339/578 (58%), Gaps = 35/578 (6%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILE 62
           MD  LYEAAA G I+  +++S     V    NKNT+LH   I+     +   +++  +  
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEHHFVVQLTPNKNTVLH---IAAQFGQLDCVQYILGLHS 103

Query: 63  MCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTND 122
               LL+  N KGD PLH AA+ GH +VV ALI+ AK+  +E+ESGV    + ++ MTN+
Sbjct: 104 SSSLLLKP-NLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGD-KAIMRMTNE 161

Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
           E+NTALHEA+++   +VVK L +EDP   Y  N  G T LYMAAERGFE ++  IL  C 
Sbjct: 162 EENTALHEAVRYHHSEVVKSLTEEDPEFIYGANIAGYTLLYMAAERGFEDLVNLILGTCT 221

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
           S ++ G  G+TALHAA +  N  ++   LL+ K  L  E D  GW+PLH A+Y     I 
Sbjct: 222 SPSYSGMMGRTALHAAVIR-NDQEMTARLLEWKPDLTKEVDENGWSPLHCAAYLGHTAIV 280

Query: 243 ELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLH 300
           E LL+   DKS+ Y+   D K TALH+AA +    +V+ ++S+ P+CCE VD +G NVLH
Sbjct: 281 EQLLDKSPDKSVTYLGLKDSKKTALHIAANRDHRDIVKLLLSHSPDCCEQVDDKGNNVLH 340

Query: 301 FAMVS--FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358
           +A++S  F A+      N+   VR LIN+KD +G+TPLHLLA+     +   +  +   D
Sbjct: 341 YAIMSEQFLAAGGILGRNSLLSVRRLINEKDAKGDTPLHLLASY--QVYDPFLSADNRVD 398

Query: 359 YQAVNKQNISVKHI--------TRYGFPQLEQEIRELSK-YIGSGQYPEGVVSMRENKIV 409
             A+NK  ++   I         R    ++ ++ RE  K  +G   + E +   +++   
Sbjct: 399 KMALNKDKLTALDIISRDKVKPRRIFKEEIRRQWREWEKVVVGPFSWQEAI--NKDSGSS 456

Query: 410 KRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSK 469
           K     K  DE+    K   E HL+VA L+ATV F+A FTLPGG       D G AIL+K
Sbjct: 457 KSEDVEK--DESISTTKREGETHLIVAALVATVTFAAGFTLPGGYN-----DNGMAILTK 509

Query: 470 QAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFI---FLFAFALFFTLVAMAAMMVA 526
           +AAF+AF+++D +A+ LS+SAVFVYF +S+   ++++    +  F  F T+++M AM+VA
Sbjct: 510 RAAFKAFIVTDTMAVILSVSAVFVYFFMSVHEDEDYLDKHLIMGF--FLTVLSMGAMVVA 567

Query: 527 FVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVL 564
           F+TG YA+L  S GL IVTCII   F +   F+F ++ 
Sbjct: 568 FMTGLYAVLPLSSGLPIVTCIICCIFLLAFYFVFRQLF 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805307|emb|CAN73752.1| hypothetical protein VITISV_007868 [Vitis vinifera]

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 237/600 (39%), Positives = 330/600 (55%), Gaps = 55/600 (9%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNN--------KNTILHVNIISRDRETIVST 54
           MD  LY A AKG++       N+L  ++ +NN        +NTILH+             
Sbjct: 25  MDATLYNALAKGKV-------NMLESLLENNNLRLQLTPKRNTILHI------AAQFGQL 71

Query: 55  EFVEQILEMCPSLLQSV------NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESG 108
           + V+ IL  C     S       N KGD PLH+AA+ GH  VV ALI  AK   +E+ES 
Sbjct: 72  DCVQWILHQCLPSSSSSSLLQQPNLKGDTPLHLAAREGHCQVVLALIAAAKAHQQEIESE 131

Query: 109 VESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAER 168
           + +  + ML   N EK+TALHEA ++   +VVK+LIKEDP   Y  N  G  PLYMAAER
Sbjct: 132 IGAD-KAMLRTENKEKDTALHEAXRYHHSEVVKLLIKEDPEFVYGANITGHNPLYMAAER 190

Query: 169 GFEKMLTEILENC-PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW 227
           G+  ++  I++N   S AH G  G+TALHAA +  N +D+   LL  K SL  E D +GW
Sbjct: 191 GYGDLVQIIIDNTHTSPAHYGIMGRTALHAAVIG-NHLDITIKLLKWKPSLTKEVDEHGW 249

Query: 228 TPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCP 285
           +PLH A++F    I + LLN   DK   Y+   D K TALH+AAG+G + +V+ ++ +CP
Sbjct: 250 SPLHCAAHFGYVKIVKQLLNKSLDKFPTYLRIKDGKKTALHIAAGRGHIDIVKLLVQHCP 309

Query: 286 ECCELVDGRGWNVLHFAMVSF-DASDLKHLLNNYPIVRNLINDKDK-EGNTPLHLLAALC 343
           +CCE VD +G NV HFAM    D    K L  +   +R L+N+KD  +G+TPLHLLA+  
Sbjct: 310 DCCEQVDCKGQNVFHFAMAKKKDXYPGKFLEIDGLKLRGLVNEKDYVKGDTPLHLLASYL 369

Query: 344 RDSFHRIVPWNVGGDYQAVNKQN--------------ISVKHITRYGFPQLEQEIRELSK 389
            D    IV   V  D   +N +               ++  +I  Y     E  +  LS 
Sbjct: 370 VDDEDFIVDHTV--DKMGLNSEYFTPNDIVSQATHNWVNKSYILHYLRKSXEGAVGPLSW 427

Query: 390 YIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFT 449
            +G  +  +   S  ENK   RT   K  D+ +  + + +E HL+VA LI TV F+A FT
Sbjct: 428 LLGIRE--DHGCSESENKDEDRTR--KKDDKIFFTLDKKAETHLIVAALITTVTFAAGFT 483

Query: 450 LPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIF-L 508
           +PGG K +     G A+L+K+AAF+AFV++D IAM LS+S+VFV F++     QE I   
Sbjct: 484 VPGGYKEDKDSSPGTAVLAKKAAFKAFVVTDTIAMVLSISSVFVSFLMVYHKKQEIIGNX 543

Query: 509 FAFALFFTLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSKAD 568
             +    T+ AM AM+VAF+TG YA+L  S GL I  C+I   FF+   ++F ++L   D
Sbjct: 544 LLWGTLLTMFAMGAMVVAFMTGLYAVLPLSSGLPIANCVICCIFFIFFCYLFRQILKDED 603

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478091|ref|XP_002270351.2| PREDICTED: ankyrin-1-like [Vitis vinifera]

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 246/603 (40%), Positives = 336/603 (55%), Gaps = 56/603 (9%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILE 62
           MD  LYEAAA G I+  +++S     V    NKNT+LH+             + V+ IL 
Sbjct: 47  MDAALYEAAAYGRIDVLEQMSEDHFVVQLTPNKNTVLHI------AAQFGQLDCVQYILG 100

Query: 63  MCPS--LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
           +  S  LL   N KGD PLH AA+ GH +VV ALI+ AK+  +E+ESGV    + ++ MT
Sbjct: 101 LNSSSFLLLRPNLKGDTPLHHAAREGHLTVVKALIDAAKRLHQEIESGVGGD-KAIMRMT 159

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
           N+E+NTALHEA+++   +VVK L +EDP   Y  N  G T LYMAAERGFE ++  I+  
Sbjct: 160 NEEENTALHEAVRYHHSEVVKSLTEEDPEFIYGANITGYTLLYMAAERGFEDLVNLIIGT 219

Query: 181 CPSVAHEGPSGKTALHAAAVNINS--------------IDVVKLLLDKKKSLIGETDRYG 226
           C S AH G  G+TALHAA +  +                ++   LL+ K  L  E D  G
Sbjct: 220 CTSPAHSGMMGRTALHAAVIRNDQGITYADPSLESRFPCEMTARLLEWKPDLTKEVDENG 279

Query: 227 WTPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYC 284
           W+PLH A+Y     I E LL+   DKS+ Y+   D K TALH+AA +    +V+ ++S+ 
Sbjct: 280 WSPLHCAAYLGYTAIVEQLLDKSPDKSVTYLGIKDSKKTALHIAANRHHQDIVKRLLSHS 339

Query: 285 PECCELVDGRGWNVLHFAMVS--FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL 342
           P+CCE VD +G NVLH A++S  + A       N+   V  LIN+KD +G+TPLHLLA+ 
Sbjct: 340 PDCCEQVDDKGNNVLHSAIMSERYYAPGNIFRDNSLLWVTGLINEKDAKGDTPLHLLASY 399

Query: 343 CRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE-LSKYIGSGQYPE-GV 400
               +   +  N   D  A+NK  ++   I      +     RE L K +  G+  + G 
Sbjct: 400 --QVYDPFLSENNRVDKMALNKDKLTALDILSRANVKSGNISREVLLKQLKEGEKVDVGP 457

Query: 401 VSMRE--NKIVKRT-----------SHWKFIDENYI--GMKEASEFHLVVATLIATVAFS 445
            S +E  NK    T           S  K + E+ I   +    E HL+VA L+ATV F+
Sbjct: 458 FSWQEAINKDSGSTGNGSADDNGSSSKSKDVGEDKIISNINRIGETHLIVAALVATVTFA 517

Query: 446 AAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEF 505
           A FTLPGG  S+G      A L+K+AAF AF+++D IA+ LS+SAVFVYF +SL   + F
Sbjct: 518 AGFTLPGGYDSDG-----MATLTKKAAFIAFIVTDTIAVTLSVSAVFVYFFMSLHEDEGF 572

Query: 506 IFLFAFALFF-TLVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIFMFYKVL 564
           +    F  F+ T+  + AMMVAF+TG YA+L  S GL IV CII  SFF+L    FY VL
Sbjct: 573 LEKHLFTGFYLTVFGIGAMMVAFMTGLYAVLPLSSGLPIVACII-CSFFLLP---FYFVL 628

Query: 565 SKA 567
            +A
Sbjct: 629 RQA 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477893|ref|XP_002271294.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 328/570 (57%), Gaps = 25/570 (4%)

Query: 2   VMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQIL 61
           VMD  +YEAAAKG+I+  K+I             NTILH   I+ +   I    ++  + 
Sbjct: 52  VMDDSVYEAAAKGDIDVLKKIPESEFHAQLSPKHNTILH---IASEFGKIECVNWILDLP 108

Query: 62  EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
               SLLQ  N   D PLH+AA+ GH  VV ALI  A++   ++E+G     + ML M N
Sbjct: 109 SSS-SLLQRPNLNEDTPLHLAARQGHLEVVEALINAAREPTLDIETG-PGPHKVMLRMKN 166

Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE-N 180
             K+TALHEA+++R+  VV +LI+EDP   Y  N  G TPLYMA E GF   +  I+E +
Sbjct: 167 KGKDTALHEAVRYRNYGVVMLLIEEDPDFTYGANDSGITPLYMAVEGGFTAAVKLIIEKS 226

Query: 181 CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY--FDR 238
             S ++ G  G+TALHAA +  N I++ K +L+ K  L  E D+ GW+PLHYA+    D 
Sbjct: 227 STSPSYNGLMGRTALHAAVI-CNDIEMTKTILEWKPDLTKEVDKNGWSPLHYAAERGCDP 285

Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV 298
            I+  LL  S+KS+AY+   D K TALH+A+     ++VE+I+S+ P C E VD +G N+
Sbjct: 286 EIVRLLLEKSEKSVAYLRSKDGKKTALHIASFHHHTKIVEKILSHSPGCREQVDDKGNNI 345

Query: 299 LHFAMVSFDASDLK---HLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNV 355
            HFAM+     D     +  N +   R L+N+K+ +GNTP+HLL +L +    R V WN 
Sbjct: 346 FHFAMMKEGDDDFNPSSYFFNYWLRSRGLVNEKNAQGNTPIHLL-SLNQILDFRFV-WNY 403

Query: 356 GGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHW 415
             D +A N ++++   I       + +E   +  ++ +     G +S    K  KR    
Sbjct: 404 KVDKKAYNNEDLTAYDIILRDKEDISEEKDRIQSWLEA--VTTGRISSFWEKETKRQEIE 461

Query: 416 KFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQA 475
           +   E    +++  E HL+V+ LI TV F+A FTLPGG K     D G AILSK+AAF+A
Sbjct: 462 QERKEYISQLQKQGETHLIVSALITTVTFAAGFTLPGGYKE----DDGQAILSKKAAFRA 517

Query: 476 FVISDAIAMALSLSAVFVYFILSLKAFQEFI---FLFAFALFFTLVAMAAMMVAFVTGAY 532
           FV++D IAM  SL AVF++F+++L    +F+    L+AF+L  T+V M AM +AF TG Y
Sbjct: 518 FVVTDTIAMVSSLCAVFLHFLMTLHKRGKFLEKHLLWAFSL--TMVGMGAMAIAFATGLY 575

Query: 533 AMLEPSLGLAIVTCIIGLSFFVLVIFMFYK 562
           A+L  S GL+++TCI+   FF+ +   + K
Sbjct: 576 AVLPHSSGLSVLTCILCSCFFLSIAVEYCK 605

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205141|emb|CBI17200.3| unnamed protein product [Vitis vinifera]

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 221/564 (39%), Positives = 310/564 (54%), Gaps = 68/564 (12%)

Query: 2   VMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQIL 61
            M  ++YEAAA G+I+  +EI      V      NTILH+            T+ V+ IL
Sbjct: 114 TMVDIVYEAAAMGDIKILEEIPESEFEVQLSPKHNTILHI------ASEFGQTDCVKWIL 167

Query: 62  EM--CPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGM 119
           E+  C SLLQ  N  GD PLH+AA+ GH  VV ALI  AK+ P ++E+   S+ + ML M
Sbjct: 168 ELPSCSSLLQRPNMNGDTPLHLAAREGHLEVVEALINTAKQLPLDIETKT-SSEKVMLRM 226

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
           TN  K+TALHEA+++   DVVK+LI+EDP   Y  N  G TPLYMAAERG+  ++  I++
Sbjct: 227 TNKGKDTALHEAVRYWHSDVVKLLIEEDPDFSYGANDSGTTPLYMAAERGYRDVVKIIID 286

Query: 180 NCPSVAHEGPSGKTALHAAAV-NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY--F 236
           N  S ++ G  G+TALHAA + N      + L  +            GW+PLH  +    
Sbjct: 287 NSTSPSYNGLMGRTALHAAVICNNQGRKCIYLFYEN-----------GWSPLHCGAERGC 335

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
           D  I+ E LLN DKS+AY+   D   TALH+A+     ++VEEI+S+ P C E VD +G 
Sbjct: 336 DPTIVGE-LLNIDKSVAYLTIKDGNKTALHIASFHHHTKIVEEIVSHSPGCREQVDDKGN 394

Query: 297 NVLHFAMVSFDASDL---KHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPW 353
           N  HFAM+     D     +  N +   R L+N+KD +GNTPLHLL+      F      
Sbjct: 395 NAFHFAMMKKGDDDYYIHSYFRNKWLRTRGLVNEKDAQGNTPLHLLSCYQIQRFSE--KG 452

Query: 354 NVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTS 413
            +   ++     N S+          +E+ +++L K   S +Y E               
Sbjct: 453 KIQEQFEWAMPGNTSM---------AMEKSMKKLKKETESKEYKE--------------- 488

Query: 414 HWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAF 473
             K+  E    +++  E HL+V+ LI TV F+A FTLPGG K     D G AILSK+AAF
Sbjct: 489 --KYTSE----LRKQGETHLIVSALITTVTFAAGFTLPGGYKE----DDGKAILSKKAAF 538

Query: 474 QAFVISDAIAMALSLSAVFVYFILSLKAFQEFI---FLFAFALFFTLVAMAAMMVAFVTG 530
            AFV++D IAM  SL AVF++F ++++   EF+    L+AF   FT+V M AM +AF TG
Sbjct: 539 GAFVVTDTIAMVSSLCAVFLHFFMTMRKDDEFLEKHLLWAF--IFTMVGMGAMAIAFATG 596

Query: 531 AYAMLEPSLGLAIVTCIIGLSFFV 554
            Y +L  S GL+ ++CI+   FF+
Sbjct: 597 LYVVLPHSSGLSFLSCILCSCFFL 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477901|ref|XP_003632040.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 228/582 (39%), Positives = 328/582 (56%), Gaps = 40/582 (6%)

Query: 1   MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQI 60
           + MD  +Y AAAKG +   K++S    ++      N++LH+       E +     +   
Sbjct: 31  IAMDSSVYRAAAKGNVHVLKQLSEDDLQIQLSPKHNSVLHIAAQFDQPECVNWILTLPSS 90

Query: 61  LEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
                SLLQ  N KGD PLH+AA+ GH  VV AL+E AK  P ++ESGV +  + ++ M 
Sbjct: 91  S----SLLQRPNLKGDTPLHLAAREGHLEVVKALLEAAKALPMDIESGVGAD-KALVRMR 145

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
           N  K+TALHEA+++R  DVVK+LIK DP   Y  N  G TPLYMAAERGF  ++  I+EN
Sbjct: 146 NKGKDTALHEAVRYRHSDVVKLLIKVDPEFMYGENISGGTPLYMAAERGFSDLVEIIIEN 205

Query: 181 CP-SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF--D 237
              S A+ G  G+TALHAA +  + + + K +L+ K +L  E D  GW+PLH A+Y    
Sbjct: 206 TSTSPAYHGLMGRTALHAAVIRKDKV-MTKKILEWKPALTKEVDEIGWSPLHCAAYLGCS 264

Query: 238 RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN 297
             I+ ELL  SDKS+ Y+   D   TALH+AA +G +++VE + S+ P+CCE VD +G N
Sbjct: 265 PTIVRELLQKSDKSVPYLGIKDGNKTALHIAANRGHMKIVELLASHSPDCCEQVDDKGNN 324

Query: 298 VLHFAMVSFDASDLKHLL-NNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVG 356
           V HFAM+        +LL N++  VR ++N+K+ EG+TP HL+++   D    I   N+G
Sbjct: 325 VFHFAMLKRRWLATGNLLYNSWLGVRGVVNEKNGEGDTPFHLISSYQIDDPTFIC--NLG 382

Query: 357 GDYQAVNKQNISVKHI--------TRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKI 408
            D  A N QN +   I         R  F  L +  R    Y+G   + E    ++E+  
Sbjct: 383 VDKMAFNNQNFTGMDILSRANDICGRRDF-VLRRFYRFKEAYVGPLWWRE---EIKEDDG 438

Query: 409 VKRTSHWKFIDENYIGMKEAS-----------EFHLVVATLIATVAFSAAFTLPGGNKSE 457
                      +  I +K  S           E HL+VA LIATV F+A FTLPGG    
Sbjct: 439 SSEGKGKGNEGDKGINIKNGSSDFSKVIQRRGENHLIVAALIATVTFAAGFTLPGGY--- 495

Query: 458 GSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFF-T 516
            + ++G A L+K+ AF+AFV+ D +AM LS+SA+F++F +S    +  +       FF T
Sbjct: 496 -NVNEGTATLAKKTAFKAFVVMDTLAMVLSVSAIFIFFFMSWHVKKASLNKHIIPGFFLT 554

Query: 517 LVAMAAMMVAFVTGAYAMLEPSLGLAIVTCIIGLSFFVLVIF 558
           ++AM AM++AF+TG YA+L  S  L + TCII  SFF+ + F
Sbjct: 555 MLAMGAMVMAFMTGLYAVLPESSWLPLFTCIICCSFFLSLYF 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772498|emb|CAN60780.1| hypothetical protein VITISV_032148 [Vitis vinifera]

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 229/573 (39%), Positives = 335/573 (58%), Gaps = 33/573 (5%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           +YEAA +G+++  + I + L R +T  NKNT+LH++I    R      E V  ++  CPS
Sbjct: 137 VYEAAVEGKMDFLQNIVH-LDRELT-PNKNTVLHIHI----RGGQAKKEHVIAMVRQCPS 190

Query: 67  LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKK---QPKELESGVESTARQMLGMTNDE 123
           LLQ  N K + PLH+AA+ G   +V AL++  K       +LESG   + R+M+GM N E
Sbjct: 191 LLQKTNNKDETPLHMAAREGLIQIVGALVDQVKAPHANDADLESGRTLSVREMIGMRNKE 250

Query: 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183
           ++TALHEA+++R L+VV  LI  DP   Y  N  GETPLYMA +RGF++++  IL  C S
Sbjct: 251 EDTALHEAVRYRRLEVVNSLIDADPEFEYCRNRAGETPLYMAVKRGFDELVDRILRTCRS 310

Query: 184 VAH-EGPSGKTALHAAAVNINSIDVV-KLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
            AH +GP+G TALH A +  ++   V + +L+K   L  +TD  GWTPLHYA+YF +   
Sbjct: 311 PAHYQGPNGLTALHQAIICSDAKGKVGRKILEKMPDLATKTDDNGWTPLHYAAYFGKVSQ 370

Query: 242 AELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHF 301
           AE LL  D+S AYI DND K T LH+AA +   ++++++ISYCP+C E+VD +  NVLH 
Sbjct: 371 AEALLKRDESAAYIADNDGK-TPLHIAASRNHAQIMKKLISYCPDCSEVVDEKRRNVLHL 429

Query: 302 AMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPW----NVGG 357
           A+ +     ++ +L N     NLINDKD +GNTPLH+ A+    SF   VP     +   
Sbjct: 430 AVQTRGREAMELILKN-SWGSNLINDKDADGNTPLHMFASSL--SF---VPTLMLSHPRV 483

Query: 358 DYQAVNKQNISVKHI--TRYGFPQLEQEIR-ELSKYIGSGQYPEGVVSMRENKIVKRTSH 414
           D  AVN + ++   I  +    P L+  +R  L  Y  +   P   V+        R + 
Sbjct: 484 DKMAVNNKGLTAADILSSNTQAPLLKGLVRFALKIYDPTPARPS--VTNDHGDXYDRGAK 541

Query: 415 WKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQ 474
            +  +     +K+AS+ HL+VA LIATVA++A FTLPGG K E    +G A+L+ +A F 
Sbjct: 542 DRVXE-----IKKASKTHLIVAALIATVAYAAGFTLPGGYKGEKGSHRGMAVLANKATFI 596

Query: 475 AFVISDAIAMALSLSAVFVYFILSLKAFQEFIF-LFAFALFFTLVAMAAMMVAFVTGAYA 533
           AF I+D +AM LS  AV ++F ++L   QE ++ +F  A + TLV M AM+ AF   A A
Sbjct: 597 AFYITDGMAMLLSTVAVVIHFFMTLHEDQEQLYRMFKLASYSTLVGMGAMLAAFAMAACA 656

Query: 534 MLEPSLGLAIVTCIIGLSFFVLVIFMFYKVLSK 566
           +L    G  +    + L     +I++ Y +L+K
Sbjct: 657 VLFSRSGAFVTLAALILFLNFSLIYLVYPLLAK 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.802	0.751	0.288	3.5e-42
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.731	0.658	0.274	2.7e-33
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.875	0.745	0.254	8e-33
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.481	0.486	0.305	1e-28
TAIR|locus:2128791	683	AT4G03470 [Arabidopsis thalian	0.483	0.408	0.306	2.5e-27
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.511	0.425	0.281	1.3e-26
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.563	0.485	0.284	2.1e-25
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.639	0.704	0.255	5.8e-16
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.700	0.684	0.265	1.3e-15
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.675	0.680	0.257	2e-15

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 3.5e-42, Sum P(2) = 3.5e-42
 Identities = 145/502 (28%), Positives = 240/502 (47%)

Query:     2 VMDPLLYEAAAKGE-IEPFKEISN---VLGRVVTHNNKNTILHVNIISRDRETIVSTEFV 57
             +M+P +  A   G+ +   K I++   V  R+V  N  N+ILH+         +     V
Sbjct:    36 IMNPAILCAVRAGDKVSLLKRINDDVKVTQRLVD-NQGNSILHI------AAALGHVHIV 88

Query:    58 EQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQML 117
             E I+   P+LLQ+VN  G+  LHVAA+ G  ++V  L+          ES   S+    +
Sbjct:    89 EFIISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILVRFIT------ES---SSYDAFI 139

Query:   118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEI 177
                +   +TALH A++ + ++V   L+     V +  N    +PLYMA E G+ +++ ++
Sbjct:   140 AAKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKM 199

Query:   178 LENC--PSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHY-AS 234
             LE+   PS+     SGK+ +HAA +  N                   +  G T L Y AS
Sbjct:   200 LESSSSPSILASMFSGKSVIHAA-MKANRRDILGIVLRQDPGLIELRNEEGRTCLSYGAS 258

Query:   235 YFDRNIIAELLLNSDK---SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV 291
                   I  +L   DK   SL Y+ D+D   T +H+AA +G +R+++E + +CP+  EL+
Sbjct:   259 MGCYEGIRYILAEFDKAASSLCYVADDDG-FTPIHMAAKEGHVRIIKEFLKHCPDSRELL 317

Query:   292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIV 351
             + +  N+ H A ++  +  +K+LL      + ++N++D  GNTPLHL           ++
Sbjct:   318 NNQCQNIFHVAAIAGKSKVVKYLLK-LDEGKRMMNEQDINGNTPLHLATKHRYPIVVNML 376

Query:   352 PWNVGGDYQAVNKQNISVKHITRYGFPQLEQEI--RELSKYIGSGQYPEGVVSMRENKIV 409
              WN G + +A+N +  +   I           +  R +   + S   P G   +     V
Sbjct:   377 TWNDGINLRALNNEGFTALDIAETMKDNNAYVLYKRLIWMALVSAGAPHGPNLIPLT--V 434

Query:   410 KRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSK 469
              ++S  K   E Y   K++    +V ATL+ATV F+A  TLPGG  S  +P  G A L  
Sbjct:   435 SQSS--KQSPERY---KDSVNTLMVTATLVATVTFAAGLTLPGGYMSS-APHLGMAALVN 488

Query:   470 QAAFQAFVISDAIAMALSLSAV 491
             +  F+ F++ + IAM  S+  V
Sbjct:   489 KLNFKVFLLLNNIAMCTSVVTV 510

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
 Identities = 124/452 (27%), Positives = 207/452 (45%)

Query:    55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
             E V++I+  CP LL   N+K   PLH AA  G  +VV A +     +  E+  G+    R
Sbjct:    85 ELVKRIVSECPCLLLETNSKDQIPLHAAAAAGRLAVVEAFVA----RVNEISDGLSEEER 140

Query:   115 Q---MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG-- 169
             +   +  M + + NTALH A++   L     L+K +    +  N  G +PL+ A   G  
Sbjct:   141 ERVNLYAMKDIDGNTALHLALKGGHLKTAACLVKANHLASFLANNHGVSPLFTAIIAGSL 200

Query:   170 --FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGW 227
                E M+    + C ++A +    K+ +HAA +                    E D  G 
Sbjct:   201 TLVEAMMYVPGQTC-NLASKLEGRKSLVHAA-LKAKNSDILDVILSEDPSLVNERDEEGR 258

Query:   228 TPLHYASY--FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCP 285
             T L  A+Y  + + ++   LL+   S  +  D+D     +H+A  +G++++  +++  CP
Sbjct:   259 TCLSVAAYVGYYKGVVN--LLHRSTSNVFECDDDGSYP-IHMAVEKGRVKIFLKLLKCCP 315

Query:   286 ECCELVDGRGWNVLHFAMVSFDASD-LKHLLNNYPIVRN-LINDKDKEGNTPLHLLAALC 343
             +   L++ +G N+LH A  S      L  ++  Y +++N LI ++D +GNTPLHL     
Sbjct:   316 DSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNTPLHLATLTW 375

Query:   344 RDSFHRIV-PWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE---LSKYIGSGQYPEG 399
             R     I+  + +G      NK  +S   I      Q     RE   L   + +   P G
Sbjct:   376 RPRTVNILNKFTLGNHLHIRNKDGLSALDIAESNL-QSNYVFRERMTLMVLLCTCS-PRG 433

Query:   400 VVSMRENKIVKRTSHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGS 459
                +  + I  ++   K     Y   K++    L+VATL+ATVAF+A   +PGG  S  +
Sbjct:   434 FKMIPTSGITLKSRSEKVAGNKY---KDSINVLLLVATLVATVAFAAGIAIPGGFSSS-T 489

Query:   460 PDQGAAILSKQAAFQAFVISDAIAMALSLSAV 491
             P +G AIL        F++ + +AM  S+ A+
Sbjct:   490 PKRGIAILDDDDFLSIFLVFNTLAMQSSVLAI 521

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 8.0e-33, P = 8.0e-33
 Identities = 141/553 (25%), Positives = 232/553 (41%)

Query:    21 EISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLH 80
             +++  L  V  H N  T+LH+   +        T+ V  IL   P LL   N+ G+  LH
Sbjct:   119 DVNIALSSVNDHGN--TMLHLAAAAGH------TDLVCYILNAYPGLLMKSNSMGEVALH 170

Query:    81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVV 140
             VAA  GH +VV AL+   K    ++       A+++    +  ++ ALH +++ + L V 
Sbjct:   171 VAAGAGHLAVVEALVSFIK----DISCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVA 226

Query:   141 KILIKEDPAVPYSTNGCGETPLYMAAERG---FEKMLTEILENCPSVAHEGPS---GKTA 194
               L+  + ++ +  N  G +PLY+A E G     K + +   N  S      S   G++ 
Sbjct:   227 SCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSI 286

Query:   195 LHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYAS---YFDRNIIAELLLNSDKS 251
             +H A +                      D  G T L + +   Y++      LL   DK+
Sbjct:   287 VHGA-MKARRKDILVAILSEDASLINFRDE-GRTCLSFGASLGYYEG--FCYLL---DKA 339

Query:   252 L--AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDAS 309
             L   Y+ D+D     +H+A   G +++++ I+  CP+  EL+D    NVLH A  +    
Sbjct:   340 LDSVYVSDDDGSFP-IHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIE 398

Query:   310 DLKHLLN--NYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNI 367
              LK +L          LIN++D  GNTPLHL           ++ W+   D + +N   +
Sbjct:   399 VLKFILRCCKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGV 458

Query:   368 SVKHITRYGFPQLEQEIRELS--KYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGM 425
             +   I              L+    I +G  P G   +    + + +   K+        
Sbjct:   459 TALDIAEKNMDSSYTFFERLTWMALISAGA-PRGPKLILSTPVTQNSDGGKY-------- 509

Query:   426 KEASEFHLVVATLIATVAFSAAFTLPGGNKSEGS-PDQGAAILSKQAAFQAFVISDAIAM 484
             K+     L+VATL+AT+ F+A FTLPGG    GS P+ G A L+K+ AFQ F++ D +AM
Sbjct:   510 KDRVNTLLLVATLVATMTFTAGFTLPGGYN--GSVPNFGMATLAKKTAFQVFLVFDTLAM 567

Query:   485 ALSLSAVFVYFILSLKAFQEFIXXXXXXXXXXXXXXXXXXXXXXXGAYAMLEPSLGLAIV 544
               S+  +       L      +                       G YA +   L + ++
Sbjct:   568 YCSIITIVALIWAQLGDLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVYGLLIVGVL 627

Query:   545 TCIIGLSFFVLVI 557
             T    L F +L +
Sbjct:   628 TSSY-LDFLLLFV 639

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.0e-28, Sum P(2) = 1.0e-28
 Identities = 90/295 (30%), Positives = 140/295 (47%)

Query:    55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
             E V+ I+  CP L+  +N K   PLHVAA  GH+++V AL+         L    E   R
Sbjct:   129 ELVKNIISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAE--EDRER 186

Query:   115 QMLGMTNDEK-NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKM 173
                 +  D+  NTALH A++ R +++   L+ E+    +  N  G + LYMA E G   +
Sbjct:   187 LNPYVLRDKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTL 246

Query:   174 LTEILENCPSVAHEGPS--------GKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRY 225
             + EIL+   +   EG +        G+  L   A+N                   E D  
Sbjct:   247 VKEILKTAGNNDLEGRNSNLDSKLEGRKHLVHVALNARSIGVLDVILNEYPSLEDERDEE 306

Query:   226 GWTPLHYASY--FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
             G T L +A+   F + +   LL  S K++ Y+ D D     +H AA  G +R+V+EI+  
Sbjct:   307 GRTCLSFAASIGFYKGV-CNLLDRSTKNV-YVCDEDGSFP-IHTAAENGHIRIVKEILKR 363

Query:   284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
             CP    +++  G NVLH A    + + +K L+ +    ++L   +D +GNTPLHL
Sbjct:   364 CPHSKHMLNKLGQNVLHIAAKIGEHNLVKSLMRSDD-TKHLGVGQDVDGNTPLHL 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128791 AT4G03470 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
 Identities = 88/287 (30%), Positives = 134/287 (46%)

Query:    55 EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALI-EIAKKQPKELESGVESTA 113
             E V+ I+  C  LL   N+K   PLHVAA+ GH +VV  L+  +     +  E   E   
Sbjct:   133 ELVKNIVSECSCLLMESNSKDQLPLHVAARMGHLAVVEDLVASVTFFSARLAEEDREILN 192

Query:   114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKM 173
               +L   N +  TAL+ A++    +V   L+  +    +     G +PLY+A E     +
Sbjct:   193 PYLLKDINGD--TALNLALKGHYTEVALCLVNANRQASFLACKDGISPLYLAVEAKDASL 250

Query:   174 LTEILENC-PSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHY 232
             +  +L N  P   +    G+  L  AA+N                   E D  G T L +
Sbjct:   251 VKAMLGNDGPQRKNLNLEGRKYLAHAALNSLSTDILDVILNEYPSLVDERDEEGRTCLSF 310

Query:   233 -ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV 291
              AS      +  LL  S K + ++ D+D     +HLA  +G+++VV+EI   CP    L+
Sbjct:   311 GASIGYHKGVCNLLNRSRKGV-FVCDDDGSYP-IHLAVEKGRIKVVKEICKRCPYSKLLL 368

Query:   292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
             + +G N+LH A  S     L+HL  +  I  +L N+KD +GNTPLHL
Sbjct:   369 NKKGQNLLHIAAESGKFRILRHLTAHEQI-NHLANEKDVDGNTPLHL 414

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
 Identities = 91/323 (28%), Positives = 142/323 (43%)

Query:    30 VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHAS 89
             +  N  ++ILH+ +      T    E V++I+  CP LL   N+ G  PLHVAA  GH +
Sbjct:   127 IKSNTGDSILHLAV------TWGHLELVKEIVCECPRLLLEQNSSGQTPLHVAAHSGHTT 180

Query:    90 VVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA 149
             +V A + +       L    ES       + + + NTAL+ A++ R  ++   L+  +  
Sbjct:   181 IVEAFVALVTFSSARL-CNEESERMNPYVLKDKDGNTALYYAIEGRYFEMAVCLVNANQD 239

Query:   150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG---------KTALHAAAV 200
              P+  N  G + L++A   G   ++  IL+   +   +G            K+  H A V
Sbjct:   240 APFLGNKYGVSSLFVAINTGDVSLVKAILKIIGNKDLKGKKSNLESKLQGQKSLAHVALV 299

Query:   201 NINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR-NIIAELLLNSDKSLAYIVDND 259
               +                 E D  GWT L  A++      +  LL  S K + Y+ D D
Sbjct:   300 TQSIAGVLDVILDEYPSLMDERDINGWTCLSLAAHIGYYEGVCNLLERSTKGV-YVCDQD 358

Query:   260 RKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP 319
                  +H AA +G   +VEE I  CP    L++  G NVLH A     A + K  ++N  
Sbjct:   359 GSFP-IHTAAEKGHENIVEEFIKRCPGSKHLLNKLGQNVLHIA-----AKNGKFWISNML 412

Query:   320 IVR----NLINDKDKEGNTPLHL 338
             I+     +L   +D +GNTPLHL
Sbjct:   413 IINKDTEHLGVGQDVDGNTPLHL 435

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
 Identities = 100/351 (28%), Positives = 154/351 (43%)

Query:     3 MDPLLYEAAAKGEIEPFKEI-SN--VLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQ 59
             M P ++   + GE E  +++ SN   + RV + N  ++ILH+             E V++
Sbjct:    67 MTPEIFGGMSNGEKECLEKLRSNGTPMERVKS-NTGDSILHI------AAKWGHLELVKE 119

Query:    60 ILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGM 119
             I+  CP LL   N+    PLHVA   GH  VV AL+         L S  ES       +
Sbjct:   120 IIFECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASL-STEESEGLNPHVL 178

Query:   120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG--FEKMLTEI 177
              +++ NTAL+ A++ R L++   L+  D   P+  N  G + LY A + G  FE ++  I
Sbjct:   179 KDEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLVKAI 238

Query:   178 LENCP-SVAHEGPS--------GKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWT 228
             L+    +V  E           G   L   A+                    E D  G T
Sbjct:   239 LKTTDDNVDREVRKFNLDSKLQGNKHLAHVALKAKSIGVLDVILDEYPSLMDEQDEDGRT 298

Query:   229 PLHY-ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
              L Y AS      +  +L  S K + Y+ D D     +H AA      +++E I  CP  
Sbjct:   299 CLSYGASIGYYKGLCNILNRSTKGV-YVCDQDGSFP-IHSAAKNEHYEIIKEFIKRCPAS 356

Query:   288 CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
               L++  G N+LH A  + +AS   ++L +    ++L   +D +GNTPLHL
Sbjct:   357 KYLLNRLGQNILHVAAKN-EASLTAYMLMHDKDTKHLGVGQDVDGNTPLHL 406

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 101/395 (25%), Positives = 171/395 (43%)

Query:   108 GVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC-GETPLYMAA 166
             GVE   +++L   N    TAL+ A ++   D+VKIL+K   +V   T    G    ++AA
Sbjct:    42 GVE--LKELLAEQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAA 99

Query:   167 ERGFEKMLTEILENCPSVAHEGPSGKT-ALHAAAVNINXXXXXXXXXXXXXXXXGETDRY 225
             + G  ++L  ++E  P ++    S KT ALH AA   +                      
Sbjct:   100 KNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSN- 158

Query:   226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCP 285
             G T LH A+     +I + L+     +   VD  +  TALH+A       +V+ ++    
Sbjct:   159 GKTALHSAARNGHTVIVKKLIEKKAGMVTRVDK-KGQTALHMAVKGQNTEIVDVLMEADG 217

Query:   286 ECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRD 345
                   D +G   LH A+    A  ++ +L    + R  +N   K G T L +     + 
Sbjct:   218 SLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVN---KSGETALDIAE---KT 271

Query:   346 SFHRIVPWNVGGDYQAVNKQNI-SVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMR 404
               H IVP       Q +  QN  S+K   +       ++++E    IG   + +   + R
Sbjct:   272 GLHEIVPL-----LQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGR 326

Query:   405 ENKIVKRTSHWKFIDENYI-GMKEASEFHLVVATLIATVAFSAAFTLPG---GNKSEGSP 460
               + ++  +  K +++ +  G+  A     +VA LIATVAF+A F +PG    +  +  P
Sbjct:   327 TRREIQGIA--KRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPP 384

Query:   461 DQ--GAAILSKQAAFQAFVISDAIAMALSLSAVFV 493
                 G A  + +  F  FV+ D+ A+ +SL+ V V
Sbjct:   385 GYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVV 419

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 117/440 (26%), Positives = 187/440 (42%)

Query:    69 QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR------QMLGMTND 122
             Q      D  LH+AA+ G  + V  +++    Q + + SG E  A        ++   N+
Sbjct:    68 QVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNE 127

Query:   123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYST-NGCGETPLYMAAERGFEKMLTEILENC 181
                TAL  A     LDVVK L+K       +  N  G  PL++AA +G   ++  +L++ 
Sbjct:   128 LGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHD 187

Query:   182 PSVAHE-GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYG-WTPLHYASYFDRN 239
              +++   GPS  T L +AA+  +                 E  R      LH A+     
Sbjct:   188 ATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLL--EISRSNNKNALHLAARQGHV 245

Query:   240 IIAELLLNSDKSLAYIVDNDRKMTALHLAA-GQGKLRVVEEIISYCPECCELVDGRGWNV 298
              + + LL+ D  LA  +D  +  TALH+A  GQ    VV+ ++   P      D      
Sbjct:   246 EVIKALLSKDPQLARRIDK-KGQTALHMAVKGQSS-EVVKLLLDADPAIVMQPDKSCNTA 303

Query:   299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358
             LH A     A ++  LL + P      N   ++  T L +   L         P +    
Sbjct:   304 LHVATRKKRA-EIVELLLSLPDTN--ANTLTRDHKTALDIAEGL---------PLSEESS 351

Query:   359 YQAVNKQNISVKHITRYG-FPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKF 417
             Y    K+ ++     R     Q   E+R     I +  + +   + R NK V   S  + 
Sbjct:   352 YI---KECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISK-EL 407

Query:   418 IDENYIGMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFV 477
                +  G+  A+    VVA L ATVAF+A FT+PGG+ ++GS     A++  +A+F+ F 
Sbjct:   408 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGS-----AVVVGRASFKIFF 462

Query:   478 ISDAIAMALSLSAVFVYFIL 497
             I +A+A+  SL+ V V   L
Sbjct:   463 IFNALALFTSLAVVVVQITL 482

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 112/435 (25%), Positives = 181/435 (41%)

Query:    75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
             G   LH+A + GH  +V A+I++    P             ++G+TN + +T LH A + 
Sbjct:    54 GGTVLHLATELGHKEIVEAIIKLC---PS------------LVGVTNLDGDTPLHFAARW 98

Query:   135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
                 +V  ++    A     NG GET   +A       + + ILE   S+   G    T 
Sbjct:    99 GHATIVAQILASGYAEFTPVNGRGETAFVVACRYTNPDVASLILEETSSITI-GEFYATF 157

Query:   195 LHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY 254
             +     +I                 GE      TPLH+A   +   I ++LL  D+SLA 
Sbjct:   158 VLGEYTDI-ARRMLERFPKLAWNADGELS----TPLHHACNANNLEITKMLLEIDESLAE 212

Query:   255 IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL 314
              V+ D   T LHLAA +  + +++E     P   +++      V H A    +     + 
Sbjct:   213 RVNKDG-FTPLHLAAMKCSIPILKEFSDKAPRYFDILTPAKETVFHLAAEHKNILAF-YF 270

Query:   315 LNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQN---ISV 369
             +   P   NL++  D+ GNT LH   A+    +  IV   +    D  A N +    + +
Sbjct:   271 MAESPDRNNLLHQVDRYGNTVLH--TAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDL 328

Query:   370 KHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKFIDENYIGMKEAS 429
              ++    + ++ + +R  +K I S   P      + NK +   S +K +       K  S
Sbjct:   329 INVDDEDYSKISRWLRFDAKQIRSLSDPN---HQQGNKNMGVLSEYKKMQIFETPSKRES 385

Query:   430 EFHL-----------VVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVI 478
             + H            +VA LIA+VAF+     PGG   EG P +G +   +  AFQ F I
Sbjct:   386 KMHAEALLNARNTITIVAVLIASVAFTCGINPPGGVYQEG-PYKGKSTAGRTLAFQVFSI 444

Query:   479 SDAIAMALSLSAVFV 493
             S+ IA+  SL  V +
Sbjct:   445 SNNIALFTSLCIVIL 459

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	577
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-04
COG0841	1009	COG0841, AcrB, Cation/multidrug efflux pump [Defen	9e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003
pfam13440	251	pfam13440, Polysacc_synt_3, Polysaccharide biosynt	0.004

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  114 bits (288), Expect = 3e-30
 Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)

Query: 424 GMKEASEFHLVVATLIATVAFSAAFTLPGGNKSE-GSPDQGAAIL-SKQAAFQAFVISDA 481
            +++     LVVATLIATV F+A FT PGG   + G    G  IL  K   F+AF +S+ 
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNT 62

Query: 482 IAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAM 534
           IA   SL AV +  +  + +F   +      L    +++ ++MVAF  G+Y +
Sbjct: 63  IAFVASLVAVIL-LLYIVPSFSRRLPRLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  103 bits (259), Expect = 2e-26
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)

Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
             +++  T LH A  +  L+VVK+L++   A   + +  G TPL++AA+ G  +++  +L
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
           E    V      G T LH AA N  ++DVVKLLL K  + +   D+ G TPLH A+    
Sbjct: 61  EKGADVNARDKDGNTPLHLAARN-GNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNGH 118

Query: 239 NIIAELLL 246
             + +LLL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.1 bits (237), Expect = 2e-23
 Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLL 212
           + +  G TPL++AA  G  +++  +LEN   V  +   G+T LH AA N   +++VKLLL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLL 60

Query: 213 DKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG 272
           +K    +   D+ G TPLH A+      + +LLL     +    D D + T LHLAA  G
Sbjct: 61  EKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGR-TPLHLAAKNG 117

Query: 273 KLRVVEEII 281
            L VV+ ++
Sbjct: 118 HLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 86.3 bits (214), Expect = 4e-20
 Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 18/143 (12%)

Query: 70  SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH 129
           + +  G  PLH+AA  GH  VV  L          LE+G +  A+      +++  T LH
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLL----------LENGADVNAK------DNDGRTPLH 45

Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
            A ++  L++VK+L+++  A   + +  G TPL++AA  G   ++  +L++   V     
Sbjct: 46  LAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104

Query: 190 SGKTALHAAAVNINSIDVVKLLL 212
            G+T LH AA N + ++VVKLLL
Sbjct: 105 DGRTPLHLAAKNGH-LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 221 ETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI 280
             D  G TPLH A+      + +LLL +   +    DND   T LHLAA  G L +V+ +
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDG-RTPLHLAAKNGHLEIVKLL 59

Query: 281 ISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
           +          D  G   LH A  + +   +K LL +       +N +DK+G TPLHL
Sbjct: 60  LEKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKH----GADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 24/146 (16%)

Query: 33  NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVT 92
            +  T LH+   +   E       V+ +LE    +    +  G  PLH+AAK GH  +V 
Sbjct: 5   EDGRTPLHLAASNGHLEV------VKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVK 57

Query: 93  ALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY 152
            L          LE G +  AR      + + NT LH A ++ +LDVVK+L+K   A   
Sbjct: 58  LL----------LEKGADVNAR------DKDGNTPLHLAARNGNLDVVKLLLKHG-ADVN 100

Query: 153 STNGCGETPLYMAAERGFEKMLTEIL 178
           + +  G TPL++AA+ G  +++  +L
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 4/87 (4%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A ++ +L++VK+L+++   V         T L++AA  G  +++  +LE+   V  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDK 214
              G TALH AA N  ++++VKLLL+ 
Sbjct: 58  DKDGNTALHLAARN-GNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGE 221
           L++AA+ G  +++  +LE    V        TALH AA N  ++++VKLLL+     +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV--NLGDTDTALHLAARN-GNLEIVKLLLEHGAD-VNA 56

Query: 222 TDRYGWTPLHYASYFDRNIIAELLLN 247
            D+ G T LH A+      I +LLL 
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 8/187 (4%)

Query: 103 KELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162
             L + +   +  +   ++ + N  L  A+   +     +L         + +  G  PL
Sbjct: 18  LLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPL 77

Query: 163 YMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN----SIDVVKLLLDKKKSL 218
           + AA +G +K++  +L +   V  +   G T LH AA+N N    +I+V KLLL+    L
Sbjct: 78  HSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL 137

Query: 219 --IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRV 276
                 D  G TPLH+A+      I ELLL  +        N   +TAL  AA  G++ +
Sbjct: 138 DVNNLRDEDGNTPLHWAALNGDADIVELLL--EAGADPNSRNSYGVTALDPAAKNGRIEL 195

Query: 277 VEEIISY 283
           V+ ++  
Sbjct: 196 VKLLLDK 202

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 66.2 bits (161), Expect = 2e-11
 Identities = 100/377 (26%), Positives = 162/377 (42%), Gaps = 53/377 (14%)

Query: 26  LGRVVTHNNKNTI----LHVNIISRDRETIVS-TEFVEQ----ILEMCPSLLQSVNAK-- 74
           L     H  K  I    +H + I+   E +    E ++Q    I EM       VNAK  
Sbjct: 117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDI 176

Query: 75  -GDAPLHVAAKCGHASVVTALIE-------IAKKQPKELESGVES----TARQML-GMTN 121
               P+H AA+ G+A +V  L+        IA      LE  V+S    T + ++   +N
Sbjct: 177 YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSN 236

Query: 122 DEKNT-ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAER-GFEKMLTEILE 179
             KN  +L +A+++  L+   +L     +V  S + C  TPL+ A++     +++ ++LE
Sbjct: 237 INKNDLSLLKAIRNEDLETSLLLYDAGFSVN-SIDDCKNTPLHHASQAPSLSRLVPKLLE 295

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
               V  +   G+T L+  A N    + ++ L+      +   DR   TPLH AS  DRN
Sbjct: 296 RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRN 354

Query: 240 ---IIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
              +I  L L ++ +     D     T +H AA +  + ++  ++ Y  +   L    G 
Sbjct: 355 KDIVITLLELGANVNARDYCDK----TPIHYAAVRNNVVIINTLLDYGADIEALSQKIG- 409

Query: 297 NVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAAL-CRDSFHR 349
             LHFA+            N Y  V+ LI      N K+K+ +TPLH      C+     
Sbjct: 410 TALHFALCG---------TNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIE 460

Query: 350 IVPWNVGGDYQAVNKQN 366
           ++  N G D  A+N QN
Sbjct: 461 MLLDN-GADVNAINIQN 476

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 4e-11
 Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 24/198 (12%)

Query: 52  VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVES 111
           +  + ++ IL+ C   +   +A+    LH A K G    +  L E               
Sbjct: 102 IEKDMIKTILD-CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-------------- 146

Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
                + + +D     +H A++H   D++K+L+ E  A     +  GE+PL+ AAE G  
Sbjct: 147 --GADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKGAYANVKDNNGESPLHNAAEYGDY 203

Query: 172 KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH 231
             +  ++++   + ++  +G T LH A ++  S   ++LL++     I + D  G TPLH
Sbjct: 204 ACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS--AIELLINNAS--INDQDIDGSTPLH 259

Query: 232 YASYF--DRNIIAELLLN 247
           +A     D +II  LL +
Sbjct: 260 HAINPPCDIDIIDILLYH 277

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 195 LHAAAVNINSIDVVKLLLDKKKSL-IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLA 253
           LH AA N  ++++VKLLL+K   + +G+TD    T LH A+      I +LLL     + 
Sbjct: 1   LHLAAKN-GNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVN 55

Query: 254 YIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECC 288
               +    TALHLAA  G L +V+ ++ +  +  
Sbjct: 56  A--KDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 4e-09
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 19/106 (17%)

Query: 79  LHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLD 138
           LH+AAK G+  +V  L+E                      +   + +TALH A ++ +L+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD------------------VNLGDTDTALHLAARNGNLE 42

Query: 139 VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
           +VK+L++   A   + +  G T L++AA  G  +++  +LE+   +
Sbjct: 43  IVKLLLEHG-ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.0 bits (140), Expect = 7e-09
 Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 31/218 (14%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
              + NTALH A +++   + ++L+    A     +    +PL+ A +   + ++  +LE
Sbjct: 164 DRHKGNTALHYATENKDQRLTELLLSYG-ANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
           N  S       G T LH +       D++KLLL+    +  ++   G T LH +   +R 
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK 282

Query: 240 IIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVL 299
           +  +LLL    +    +++  K+T L  A  Q            C     ++      + 
Sbjct: 283 L--KLLLEY-GADINSLNSY-KLTPLSSAVKQ----------YLCINIGRIL------IS 322

Query: 300 HFAMVSFDASDLKHLL---------NNYPIVRNLINDK 328
           +  ++     D+K+            +   +   I DK
Sbjct: 323 NICLLKRIKPDIKNSEGFIDNMDCITSNKRLNQ-IKDK 359

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 39/265 (14%)

Query: 42  NIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQ 101
           + I   +  I+  + ++ I+ M   L      K   PL++A +  +  VV  L++     
Sbjct: 3   SYIVLTKSRIIKVKNIKYII-MEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADI 61

Query: 102 PKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKI--LIKEDPAVPYSTNGCGE 159
                              N+         +++   DV +I  L+ E  A   + +  G 
Sbjct: 62  NSS--------------TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGI 107

Query: 160 TPLYMAAERGFE--KMLTEILENCPSVAHEGPSGKTALHAAA-----------------V 200
           TPL  A  +      ++  +L+N  +V  +   G+  LH                    V
Sbjct: 108 TPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGV 167

Query: 201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDR 260
           +IN+ + V  LL      I   D YG+TPLHYA Y +     + LL+   +   +  N  
Sbjct: 168 DINAKNRVNYLL-SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLV--NKY 224

Query: 261 KMTALHLAAGQGKLRVVEEIISYCP 285
             T LH+A       + + +++  P
Sbjct: 225 GDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 30/189 (15%)

Query: 70  SVNAK---GDAPLHV--AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEK 124
            VNAK   G  PLHV  +    +  V+  L          L  G +  A  + GMT    
Sbjct: 109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLL----------LRKGADVNALDLYGMT---- 154

Query: 125 NTALHEAMQHR--SLDVVKILIKEDPAVPYSTNGCGETPLYMAAE--RGFEKMLTEILEN 180
              L   ++ R  +++++++LI    A  Y+ +    + L+   +  +   +++ E++  
Sbjct: 155 --PLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRA 211

Query: 181 CPSVAHEGPSGKTALHAAAV--NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
               A     G T LH+ A   +     V+ LL+      I   +RYG TPLHYA+ F+ 
Sbjct: 212 GCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLI--AGISINARNRYGQTPLHYAAVFNN 269

Query: 239 NIIAELLLN 247
                 L+ 
Sbjct: 270 PRACRRLIA 278

Length = 471

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE 289
           LH A+      + +LLL         V+     TALHLAA  G L +V+ ++ +  +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLEHGADVN- 55

Query: 290 LVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN 326
             D  G   LH A  +           N  IV+ L+ 
Sbjct: 56  AKDKDGNTALHLAARN----------GNLEIVKLLLE 82

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 19/96 (19%)

Query: 53  STEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112
           + E V+ +LE    +        D  LH+AA+ G+  +V  L          LE G +  
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLL----------LEHGADVN 55

Query: 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148
           A+      + + NTALH A ++ +L++VK+L++   
Sbjct: 56  AK------DKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 11/141 (7%)

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG--------FEKMLTEI 177
             LH A       +VK+L+    A   + +  G+TPL++AA  G          K+L E 
Sbjct: 75  LPLHSAASKGDDKIVKLLL-ASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 178 LENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD 237
             +          G T LH AA+N    D+V+LLL+         + YG T L  A+   
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALN-GDADIVELLLEAGADPNSR-NSYGVTALDPAAKNG 191

Query: 238 RNIIAELLLNSDKSLAYIVDN 258
           R  + +LLL+    L+ +  N
Sbjct: 192 RIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 64/237 (27%), Positives = 95/237 (40%), Gaps = 50/237 (21%)

Query: 136 SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE---------NCPSVAH 186
           +++ V+ L+     V +     G+TPL++      EK + +I+          N P    
Sbjct: 26  TVEEVRRLLAAGADVNF-RGEYGKTPLHLYLHYSSEK-VKDIVRLLLEAGADVNAPER-- 81

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH-YASYFDRNI---IA 242
               G T LH    N  ++DV+KLL+      +   D+ G TPLH Y S F  NI   + 
Sbjct: 82  ---CGFTPLHLYLYNATTLDVIKLLIKAGAD-VNAKDKVGRTPLHVYLSGF--NINPKVI 135

Query: 243 ELLLNSDKSLAYIVDNDRK---MTALH--LAAGQGKLRVVEEIISYCPECCELVDGRGWN 297
            LLL     +     N      MT L   L +    + ++  +I    +    VD R  +
Sbjct: 136 RLLLRKGADV-----NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRS 189

Query: 298 VLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAAL--CRDS 346
           +LH  + SF             IVR LI         D  GNTPLH +A    C+ S
Sbjct: 190 LLHHHLQSFKP--------RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS 238

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
           TALH AA++   +++VK LL+K    I  TD  G T LH A+      + +LLL
Sbjct: 3   TALHKAAIS-GRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 19/222 (8%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAER----GFEKMLTEILENCPS 183
           LH+A++ R+LDVVK L+     V    +    TPL++  +     G ++M+  I +   S
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVN-QPDHRDLTPLHIICKEPNKLGMKEMIRSINKC--S 97

Query: 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE 243
           V +   + K A +   V I  I    +L ++ K++      Y           +  I   
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKI----ILTNRYKNIQTIDLVYIDK-KSKDDIIEAEITK- 151

Query: 244 LLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAM 303
            LL S  +   + D  +  TALH A      R+ E ++SY      + D    + LH A+
Sbjct: 152 -LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAV 209

Query: 304 VSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRD 345
             ++   +  LL N        + +DK GNTPLH+    C+D
Sbjct: 210 KHYNKPIVHILLEN----GASTDARDKCGNTPLHISVGYCKD 247

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
            TALH+A     L++VK L+ E       T+  G T L++AAE G  ++L
Sbjct: 2   RTALHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEVL 50

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 24/211 (11%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L  A++  + D++K+LI          NG   + L +      + M+  IL+    V  +
Sbjct: 72  LLTAIKIGAHDIIKLLI---------DNGVDTSILPIPCIE--KDMIKTILDCGIDVNIK 120

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
               KT LH A      ++ +K+L  +  + +   D  G  P+H A   +   I +LLL 
Sbjct: 121 DAELKTFLHYAIKK-GDLESIKMLF-EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLE 178

Query: 248 SDKSLAYI-VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306
                AY  V ++   + LH AA  G    ++ +I +           G+  LH A++  
Sbjct: 179 KG---AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII-H 233

Query: 307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLH 337
           + S ++ L+NN  I     ND+D +G+TPLH
Sbjct: 234 NRSAIELLINNASI-----NDQDIDGSTPLH 259

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 30/233 (12%)

Query: 125 NTALHEAMQ---HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF-EKMLTEILEN 180
            T LH  +     +  D+V++L++    V      CG TPL++         ++  +++ 
Sbjct: 48  KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER-CGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 181 CPSVAHEGPSGKTALHA--AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH-YASYFD 237
              V  +   G+T LH   +  NIN   V++LLL K    +   D YG TPL       +
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINP-KVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRN 164

Query: 238 RNI-IAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR--VVEEIISYCPECCELVDGR 294
            N+ +  LL+++   +   VD+    + LH      K R  +V E+I          D  
Sbjct: 165 ANVELLRLLIDAGADVYA-VDDRF-RSLLHHHLQSFKPRARIVRELIRAG------CDPA 216

Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
             ++L    +   A           +V  L+      N +++ G TPLH  A 
Sbjct: 217 ATDMLGNTPLHSMA---TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 57  VEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQM 116
           VE++L++           G  PLH+A       ++  LI       +  +  + +T    
Sbjct: 84  VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIA------RGADPDIPNT---- 133

Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTE 176
                 +K + LH A+    +  +++LI    A     + CG TPL +A  +G   +   
Sbjct: 134 ------DKFSPLHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCTPLIIAMAKGDIAICKM 186

Query: 177 ILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK 214
           +L++  ++ + G +G  A    A+  N ID+V+L + +
Sbjct: 187 LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 24/152 (15%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G  PLH AA  G   +V  L+           SG +  A+      + + +T LH A  +
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLA----------SGADVNAK------DADGDTPLHLAALN 116

Query: 135 RSL-----DVVKILIK--EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
            +      +V K+L++   D  V    +  G TPL+ AA  G   ++  +LE        
Sbjct: 117 GNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR 176

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLI 219
              G TAL  AA N   I++VKLLLDK   L 
Sbjct: 177 NSYGVTALDPAAKN-GRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 177 ILENCP-SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233
           +LE+ P  +     +G T LH AA    ++++V+ LL     L    D  G T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKY-GALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 61/215 (28%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L+ A + R++DVVKIL+          NG       + +           L N      +
Sbjct: 39  LYLAKEARNIDVVKILLD---------NGA-----DINSSTKNNSTPLHYLSNIKYNLTD 84

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN---IIAEL 244
                             ++VKLLL +  + +   D  G TPL YA     N   I+  L
Sbjct: 85  VK----------------EIVKLLL-EYGANVNAPDNNGITPLLYAISKKSNSYSIVEYL 127

Query: 245 LLNSDKSLAYIVDNDRKMTALHLAAGQG--KLRVVEEIISYCPECCELVDGRGWNVLHFA 302
           L N       I ++D +   LHL        L++++ +I            +G ++    
Sbjct: 128 LDNGAN--VNIKNSDGEN-LLHLYLESNKIDLKILKLLID-----------KGVDI---- 169

Query: 303 MVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLH 337
               +A +  + L +Y +    IN KD  G TPLH
Sbjct: 170 ----NAKNRVNYLLSYGVP---INIKDVYGFTPLH 197

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 3/160 (1%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH+A++   +  V+ L+             G TPL++A       ++  ++         
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
                + LH A V +  I  ++LL+D K  L  E D  G TPL  A       I ++LL+
Sbjct: 132 NTDKFSPLHLA-VMMGDIKGIELLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLD 189

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
           S  ++ Y   N   + AL  A    K+ +V   I    +C
Sbjct: 190 SGANIDYFGKNG-CVAALCYAIENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 72/291 (24%), Positives = 114/291 (39%), Gaps = 77/291 (26%)

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTN-GCGET-------PLYMAAERGFE------ 171
           TA+H+A+Q R +D+V+ +I+++P + Y T+  C  T       P  M             
Sbjct: 43  TAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDII 102

Query: 172 ---KMLTEIL------ENCPSVAHEGPSGKTALHAAAVNINSIDVVKL------------ 210
              K  + IL      E C  +  E  SG   +H   +N  SI+ +KL            
Sbjct: 103 LDIKYASIILNKHKLDEACIHILKEAISGND-IHYDKIN-ESIEYMKLIKERIQQDELLI 160

Query: 211 --LLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA 268
             +L +  + +   D Y  TP+HYA+      +  LLL+    +  I  +D  ++ L  A
Sbjct: 161 AEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDD--LSVLECA 218

Query: 269 AGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL--LNNYPIVRNL-- 324
                +  ++ II          D R          + + +DL  L  + N  +  +L  
Sbjct: 219 VDSKNIDTIKAII----------DNRS---------NINKNDLSLLKAIRNEDLETSLLL 259

Query: 325 ------INDKDKEGNTPLHLLAALCRDSFHRIVP--WNVGGDYQAVNKQNI 367
                 +N  D   NTPLH   A    S  R+VP     G D   VN +NI
Sbjct: 260 YDAGFSVNSIDDCKNTPLH--HASQAPSLSRLVPKLLERGAD---VNAKNI 305

Length = 682

>gnl|CDD|223911 COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]

 Score = 42.2 bits (100), Expect = 9e-04
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 29/111 (26%)

Query: 482 IAMALSLSAVFV--YFILSL--KAFQEFIFLFAFALFFTLV-------AMAAMMV----- 525
           IA+ L L AVF+   F+     + F++F    A A+  +L+       A+ A ++     
Sbjct: 432 IAITLVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPP 491

Query: 526 ------------AFVTGAY-AMLEPSLGLAIVTCIIGLSFFVLVIFMFYKV 563
                         +   Y   L   L    +  ++ L      + +F K+
Sbjct: 492 PKGFFGWFNRFFDRLEDRYQRGLRWVLRRRALVLLLYLVLLGGSVLLFLKL 542

Length = 1009

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 211 LLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA 268
           LL+     +  TD  G TPLH A+ +    + + LL     L  + D+D   TAL LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGL-TALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 143 LIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA 198
           L++  P    +T+G G TPL++AA+ G  +++  +L+    +      G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 20/165 (12%)

Query: 30  VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHA- 88
              NN  T L   I     +   S   VE +L+   + +   N+ G+  LH+  +     
Sbjct: 101 APDNNGITPLLYAIS----KKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKID 155

Query: 89  -SVVTALIE----IAKKQPKE--LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVK 141
             ++  LI+    I  K      L  GV    + + G       T LH A+ + + + VK
Sbjct: 156 LKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYG------FTPLHYAVYNNNPEFVK 209

Query: 142 ILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            L+    A P   N  G+TPL++A     +++   +L N PS+  
Sbjct: 210 YLLDLG-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G T LH A V  N+ + VK LLD   +     ++YG TPLH A   +   I +LLLN+  
Sbjct: 192 GFTPLHYA-VYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Query: 251 SLAYIVDN 258
           S+  I++ 
Sbjct: 250 SIKTIIET 257

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
           G T LH A+   R  + + LL     +     ++   TALH+AA  G L V++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT--DEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
           +    T LHLAA  G L +V+ ++        L D  G   L  A
Sbjct: 13  DGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 121 NDEKNTALHEAMQHR--SLDVVKILIKEDPAVPYSTNGCGETPL--YMAAERGFEKMLTE 176
           ND   T +   ++    +++++K LI+    V + T     + L  Y++  +  E  + +
Sbjct: 48  NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILK 107

Query: 177 IL-ENCPSVAHEGPSGKTALHAAAVNIN-SIDVVKLLLDKKKSLIGETDRYGWTPLH-YA 233
           IL ++  S+  E   GK  LH    N N  I+V+KLL+D   S +   D      L+ Y 
Sbjct: 108 ILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL-NKDFDNNNILYSYI 166

Query: 234 SYFDRNIIAELLL 246
            +     I + L 
Sbjct: 167 LFHSDKKIFDFLT 179

Length = 209

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 20/141 (14%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
           ++KG  PLH+AA  G+   V  L          L+       R   G      NTAL  A
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLVL----------LKHACNVHIRDANG------NTALWNA 598

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
           +  +   + +IL         S        L  AA+R     + E+L+   +V  E   G
Sbjct: 599 ISAKHHKIFRILYHFASI---SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG 655

Query: 192 KTALHAAAVNINSIDVVKLLL 212
            TAL  A    + +D+V+LL+
Sbjct: 656 ATALQVAMAE-DHVDMVRLLI 675

Length = 823

>gnl|CDD|222131 pfam13440, Polysacc_synt_3, Polysaccharide biosynthesis protein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 11/143 (7%)

Query: 422 YIGMKEASEFHLVVAT-LIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQAAFQAFVISD 480
           ++G+++   F L ++   +  +  S          S G P         +   QA   S 
Sbjct: 14  FLGLEDFGAFSLALSIISLLLILSSFGLRPSLVRDSGGDP---------RELRQAVRFSL 64

Query: 481 AIAMALSLSAVFVYFILSLKAFQEFIFLFAFALFFTLVAMAAMMVAFVTGAYAMLEPSLG 540
             A+ LSL+   +  +++L    E   L    L   L  +  ++    +  +A       
Sbjct: 65  LAALLLSLAVALLVSLIALFFGDEETGLLLLLLGLILALL-LLLDILRSILFARGRFRAA 123

Query: 541 LAIVTCIIGLSFFVLVIFMFYKV 563
                  + +   +LV+F++   
Sbjct: 124 AVSDLLRLVVVLLLLVLFLYLGA 146

Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	577
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PF13962	113	PGG: Domain of unknown function	99.95
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
PHA02741	169	hypothetical protein; Provisional	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.37
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.36
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.33
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.3
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.22
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.22
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.19
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.18
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.18
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.17
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.16
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.1
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.63
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.56
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.55
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.51
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.5
PF13606	30	Ank_3: Ankyrin repeat	98.4
PF13606	30	Ank_3: Ankyrin repeat	98.38
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.36
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.31
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.27
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.2
KOG0522	560	consensus Ankyrin repeat protein [General function	98.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.12
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.04
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.03
KOG0522	560	consensus Ankyrin repeat protein [General function	97.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.82
KOG0511	516	consensus Ankyrin repeat protein [General function	97.77
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.72
KOG2384	223	consensus Major histocompatibility complex protein	97.54
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.52
KOG2384	223	consensus Major histocompatibility complex protein	97.52
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.51
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.42
KOG0511	516	consensus Ankyrin repeat protein [General function	97.07
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.84
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.66
KOG2505	591	consensus Ankyrin repeat protein [General function	94.64
KOG2505	591	consensus Ankyrin repeat protein [General function	94.6
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.29
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.23
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.52
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.67
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	87.36
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.55
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	84.47

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=409.70  Aligned_cols=354  Identities=21%  Similarity=0.256  Sum_probs=297.4

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCCc--cccCCCCccceeeeecCCc---------------------------------
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGRV--VTHNNKNTILHVNIISRDR---------------------------------   48 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~g~t~Lh~A~~~g~~---------------------------------   48 (577)
                      .++||.|++.|+.++|+.|++++++.  ..+..|+||||+|+..++-                                 
T Consensus        42 ~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (682)
T PHA02876         42 FTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEAC  121 (682)
T ss_pred             chHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHH
Confidence            46899999999999999999998875  6666899999988844330                                 


Q ss_pred             ----------------------------------cchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHH
Q 008102           49 ----------------------------------ETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTAL   94 (577)
Q Consensus        49 ----------------------------------~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~L   94 (577)
                                                        ...+++++|++    .+..++.+|..|.||||+|+..|+.++|++|
T Consensus       122 ~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~----~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~L  197 (682)
T PHA02876        122 IHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE----GGADVNAKDIYCITPIHYAAERGNAKMVNLL  197 (682)
T ss_pred             HHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence                                              01455555554    6788899999999999999999999999999


Q ss_pred             HHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC------------------------
Q 008102           95 IEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV------------------------  150 (577)
Q Consensus        95 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------------------  150 (577)
                      ++.|++                ++..+.+|.||||.|+..|+.++++.|++.+++.                        
T Consensus       198 L~~Gad----------------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~  261 (682)
T PHA02876        198 LSYGAD----------------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYD  261 (682)
T ss_pred             HHCCCC----------------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHH
Confidence            999877                3456777888888888888888887777654432                        


Q ss_pred             ----CcCCCCCCChHHHHHHHhCCH-HHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102          151 ----PYSTNGCGETPLYMAAERGFE-KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       151 ----~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                          ....+..|.||||+|+..|+. ++++.|++.|++++..+..|.||||.|+..+...++++.|+..+.+ ++..|..
T Consensus       262 ~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~  340 (682)
T PHA02876        262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRL  340 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccC
Confidence                124566799999999999986 6899999999999999999999999999993369999999999888 7888999


Q ss_pred             CCcHHHHHHhc-CcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHh
Q 008102          226 GWTPLHYASYF-DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV  304 (577)
Q Consensus       226 g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (577)
                      |.||||+|+.. ++.++++.|++.|.+++  ..+..|.||||+|+..|+.++++.|++++++ ++..+..|.||||+|+.
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin--~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVN--ARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALC  417 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCc--cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHH
Confidence            99999999986 46889999999998886  3455799999999999999999999999998 77888999999999987


Q ss_pred             cCC-hhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHhcCCcchHHH
Q 008102          305 SFD-ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQE  383 (577)
Q Consensus       305 ~~~-~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~  383 (577)
                      .++ ..++++|+++    |+++|.+|.+|+||||+|+..+....+.++|++.|+|+|.+|..|.||+++|... ..+++.
T Consensus       418 ~~~~~~~vk~Ll~~----gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~-~~~v~~  492 (682)
T PHA02876        418 GTNPYMSVKTLIDR----GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY-HGIVNI  492 (682)
T ss_pred             cCCHHHHHHHHHhC----CCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-CCHHHH
Confidence            665 4578899988    9999999999999999999887566788999999999999999999999999832 245555


Q ss_pred             HHH
Q 008102          384 IRE  386 (577)
Q Consensus       384 l~~  386 (577)
                      +..
T Consensus       493 Ll~  495 (682)
T PHA02876        493 LLH  495 (682)
T ss_pred             HHH
Confidence            544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.1e-44  Score=367.95  Aligned_cols=336  Identities=15%  Similarity=0.114  Sum_probs=278.1

Q ss_pred             HHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeee--cCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHH
Q 008102            6 LLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNII--SRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAA   83 (577)
Q Consensus         6 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~--~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~   83 (577)
                      +++.++..|+.+.++.+++..    .+..+.++||.++.  .++   .++++.|++    .+..++.+|.+|.||||+|+
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~----~~~g~~~~Lh~~~~~~~~~---~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa   80 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAI----EPSGNYHILHAYCGIKGLD---ERFVEELLH----RGYSPNETDDDGNYPLHIAS   80 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhcc----CCCCCChHHHHHHHhcCCC---HHHHHHHHH----CcCCCCccCCCCCCHHHHHH
Confidence            467888889999998888642    12123688997653  345   788999877    57788899999999999999


Q ss_pred             HhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcC--CHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102           84 KCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHR--SLDVVKILIKEDPAVPYSTNGCGETP  161 (577)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tp  161 (577)
                      ..|+.++|++|++.|++                ++.+|.+|.||||+|+..+  +.++++.|+++|++++...+..|.||
T Consensus        81 ~~g~~eiv~lLL~~GAd----------------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tp  144 (446)
T PHA02946         81 KINNNRIVAMLLTHGAD----------------PNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGP  144 (446)
T ss_pred             HcCCHHHHHHHHHCcCC----------------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcH
Confidence            99999999999998876                4668999999999998866  47899999999999886778889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcC--c
Q 008102          162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN-INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD--R  238 (577)
Q Consensus       162 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g--~  238 (577)
                      |+ |+..|+.++++.|++.|++++..|..|+||||.|+.. .++.+++++|++.+.+ ++..|.+|.||||+|+..+  +
T Consensus       145 L~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        145 LL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCCc
Confidence            97 6677899999999999999999999999999998875 1346899999999888 7888999999999999876  7


Q ss_pred             HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc-HHHHHHHHhhCCcc-------------------cccc-cCCCCc
Q 008102          239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK-LRVVEEIISYCPEC-------------------CELV-DGRGWN  297 (577)
Q Consensus       239 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~~~-------------------~~~~-d~~g~t  297 (577)
                      .+++++|++ +++++  ..+..|.||||+|+..++ .++++.|++++...                   .+.. +..|+|
T Consensus       223 ~~iv~lLl~-gadin--~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~T  299 (446)
T PHA02946        223 VDIINLLLP-STDVN--KQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDST  299 (446)
T ss_pred             HHHHHHHHc-CCCCC--CCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCC
Confidence            889998885 66664  345589999999999887 58888998886531                   1111 235779


Q ss_pred             hhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cC
Q 008102          298 VLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YG  376 (577)
Q Consensus       298 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~  376 (577)
                      |||+|+.+|+.+++++|+++    +       .+|+||||+|+..+ ...+.++|+.+|+++|.. ..|.||+++|. .+
T Consensus       300 pLh~Aa~~g~~eivk~Ll~~----~-------~~~~t~L~~A~~~~-~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~  366 (446)
T PHA02946        300 DFKMAVEVGSIRCVKYLLDN----D-------IICEDAMYYAVLSE-YETMVDYLLFNHFSVDSV-VNGHTCMSECVRLN  366 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHC----C-------CccccHHHHHHHhC-HHHHHHHHHHCCCCCCCc-cccccHHHHHHHcC
Confidence            99999999999999999987    3       36899999999998 788889999999999996 58999999998 77


Q ss_pred             CcchHHHHHH
Q 008102          377 FPQLEQEIRE  386 (577)
Q Consensus       377 ~~~~~~~l~~  386 (577)
                      ++.+++.|..
T Consensus       367 ~~~~~~~ll~  376 (446)
T PHA02946        367 NPVILSKLML  376 (446)
T ss_pred             CHHHHHHHHh
Confidence            7777777665

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-44  Score=394.11  Aligned_cols=350  Identities=17%  Similarity=0.123  Sum_probs=296.1

Q ss_pred             HHHHHHHHcCCcHHHHHhhhh------cCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCc
Q 008102            5 PLLYEAAAKGEIEPFKEISNV------LGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDA   77 (577)
Q Consensus         5 ~~L~~Aa~~g~~~~v~~Ll~~------~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t   77 (577)
                      .+||.++..|+.+.+-.++..      +.+. .....+.||||.|+..||   .++|+.|++   .+|......|..|.|
T Consensus         4 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~---~e~V~~ll~---~~~~~~~~~~~~~~t   77 (682)
T PHA02876          4 DDLYRIMCRGNCIDILSAIDNYDLHKHGANQCENESIPFTAIHQALQLRQ---IDIVEEIIQ---QNPELIYITDHKCHS   77 (682)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHh---hhHHHHHHH---hCcccchhhchhhcc
Confidence            369999999999765555543      3232 223478999999999999   999999965   488888889999999


Q ss_pred             HHHHHHH----------------------------------------------------------------------hCC
Q 008102           78 PLHVAAK----------------------------------------------------------------------CGH   87 (577)
Q Consensus        78 ~Lh~A~~----------------------------------------------------------------------~g~   87 (577)
                      |||+|+.                                                                      .|+
T Consensus        78 pLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  157 (682)
T PHA02876         78 TLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDE  157 (682)
T ss_pred             ccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCc
Confidence            9997773                                                                      344


Q ss_pred             HHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHH
Q 008102           88 ASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE  167 (577)
Q Consensus        88 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  167 (577)
                      .+++++|++.|++                ++.+|..|.||||+|++.|+.++|++|+++|++++ ..+..|.||||+|+.
T Consensus       158 ~~i~k~Ll~~Gad----------------vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n-~~~~~g~t~L~~A~~  220 (682)
T PHA02876        158 LLIAEMLLEGGAD----------------VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVD  220 (682)
T ss_pred             HHHHHHHHhCCCC----------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-ccCCCCCCHHHHHHH
Confidence            4555555554443                56788999999999999999999999999998876 677789999999999


Q ss_pred             hCCHHHHHHHHH-----------------------------hCCCCCCCCCCCCCHHHHHHHcCCCH-HHHHHHHhhCCC
Q 008102          168 RGFEKMLTEILE-----------------------------NCPSVAHEGPSGKTALHAAAVNINSI-DVVKLLLDKKKS  217 (577)
Q Consensus       168 ~g~~~~v~~Ll~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~~~-~~~~~Ll~~~~~  217 (577)
                      .|+.++++.|++                             .|.+++..+..|.||||+|+.. ++. ++++.|++.+.+
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~-~~~~~iv~lLl~~gad  299 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA-PSLSRLVPKLLERGAD  299 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC-CCHHHHHHHHHHCCCC
Confidence            998888776655                             4455667788899999999998 665 689999999887


Q ss_pred             ccccCCCCCCcHHHHHHhcC-cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc-CcHHHHHHHHhhCCcccccccCCC
Q 008102          218 LIGETDRYGWTPLHYASYFD-RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ-GKLRVVEEIISYCPECCELVDGRG  295 (577)
Q Consensus       218 ~~~~~d~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~iv~~Ll~~~~~~~~~~d~~g  295 (577)
                       ++..|..|.||||+|+..| +.++++.|++.|++++  ..+..|.||||+|+.. ++.++++.|++.+.+ ++.+|..|
T Consensus       300 -in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin--~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G  375 (682)
T PHA02876        300 -VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN--AADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCD  375 (682)
T ss_pred             -CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC--CcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCC
Confidence             7889999999999999999 5999999999999886  3345899999999985 578899999999988 78899999


Q ss_pred             CchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-
Q 008102          296 WNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-  374 (577)
Q Consensus       296 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-  374 (577)
                      +||||+|+..++.+++++|+++    |++++..+..|.||||+|+..++...+.++|++.|+|+|.+|..|+||+++|+ 
T Consensus       376 ~TpLh~Aa~~~~~~iv~~Ll~~----gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~  451 (682)
T PHA02876        376 KTPIHYAAVRNNVVIINTLLDY----GADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK  451 (682)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHC----CCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH
Confidence            9999999999999999999998    99999999999999999998876666678999999999999999999999998 


Q ss_pred             cC-CcchHHHHHH
Q 008102          375 YG-FPQLEQEIRE  386 (577)
Q Consensus       375 ~~-~~~~~~~l~~  386 (577)
                      .+ +.++++.|.+
T Consensus       452 ~~~~~~iv~lLl~  464 (682)
T PHA02876        452 KNCKLDVIEMLLD  464 (682)
T ss_pred             hCCcHHHHHHHHH
Confidence            34 4678888877

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-43  Score=356.74  Aligned_cols=331  Identities=25%  Similarity=0.296  Sum_probs=289.1

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCC-ccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGR-VVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA   82 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~-~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A   82 (577)
                      +.+++.|+..+..      +++... ...++.|++|||.|+.+..   .+.++.+++    .|.+...+|.++.+|+|+|
T Consensus        62 d~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~---~~~i~~Lls----~gad~~~~n~~~~aplh~A  128 (929)
T KOG0510|consen   62 DTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQ---GDKIQVLLS----YGADTPLRNLNKNAPLHLA  128 (929)
T ss_pred             hhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcch---HHHHHHHHh----cCCCCChhhhhccCchhhc
Confidence            4455555555543      222122 2555688999999999999   999999988    6888888999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHH
Q 008102           83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL  162 (577)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  162 (577)
                      +..|+.+..+.|++.+++                ++..|+.|.||||.|++.++.|..+.|++.++++. ..|.+|..|+
T Consensus       129 ~~~~~~s~L~~Ll~~~~d----------------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~-K~~~~~~~~i  191 (929)
T KOG0510|consen  129 ADSGNYSCLKLLLDYGAD----------------VNLEDENGFTPLHLAARKNKVEAKKELINKGADPC-KSDIDGNFPI  191 (929)
T ss_pred             cccchHHHHHHHHHhcCC----------------ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCC-cccCcCCchH
Confidence            999999999999999866                57789999999999999999998899999998875 7888999999


Q ss_pred             HHHHHhCCHHHHHHHHH-----hCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC--------------ccccCC
Q 008102          163 YMAAERGFEKMLTEILE-----NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS--------------LIGETD  223 (577)
Q Consensus       163 ~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~--------------~~~~~d  223 (577)
                      |.|+++|..++.+..+.     ++..++..++.+.||||.|+.. |+.++++.+++.+..              +.+..|
T Consensus       192 H~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~-g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d  270 (929)
T KOG0510|consen  192 HEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG-GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDED  270 (929)
T ss_pred             HHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc-CCHHHHHHHHhCccccchhhhHHHHHHHHHhhccc
Confidence            99999999999999998     6678889999999999999999 999999999987654              255678


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh-hCCcccccccCCCCchhhHH
Q 008102          224 RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS-YCPECCELVDGRGWNVLHFA  302 (577)
Q Consensus       224 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A  302 (577)
                      .+|.||||+|++.|+.+.++.|+..|++++  ..+.++.||||.|+..|+.+.++.|++ .+....+..|..|+||||.|
T Consensus       271 ~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~--~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  271 NDGCTPLHYAARQGGPESVDNLLGFGASIN--SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             ccCCchHHHHHHcCChhHHHHHHHcCCccc--ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            999999999999999999999999999986  344578999999999999999999999 66667888899999999999


Q ss_pred             HhcCChhHHHHHHhcccccccccc---CCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHH
Q 008102          303 MVSFDASDLKHLLNNYPIVRNLIN---DKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHI  372 (577)
Q Consensus       303 ~~~~~~~~v~~Ll~~~~~~~~~~n---~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~  372 (577)
                      +++|+..+++.|+++    |++.+   ..|.+|+||||+|++.| .....+.|+.+|+++..+|+.|.|++|+
T Consensus       349 a~~gH~~v~qlLl~~----GA~~~~~~e~D~dg~TaLH~Aa~~g-~~~av~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNK----GALFLNMSEADSDGNTALHLAAKYG-NTSAVQKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hhcCHHHHHHHHHhc----ChhhhcccccccCCchhhhHHHHhc-cHHHHHHHHHcCCceeeccccccccccc
Confidence            999999999999998    77766   56999999999999999 6777888899999999999999999985

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.5e-42  Score=353.65  Aligned_cols=309  Identities=14%  Similarity=0.120  Sum_probs=261.8

Q ss_pred             HHHHHHH--HcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            5 PLLYEAA--AKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         5 ~~L~~Aa--~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      ..||.++  ..++.++++.|++.|.++ ..+.+|.||||+|+..|+   .+++++|++    .+..++.+|.+|.||||+
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~---~eiv~lLL~----~GAdin~~d~~g~TpLh~  111 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINN---NRIVAMLLT----HGADPNACDKQHKTPLYY  111 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCC---HHHHHHHHH----CcCCCCCCCCCCCCHHHH
Confidence            3456554  445678999999999888 666699999999999999   999999987    578889999999999999


Q ss_pred             HHHhC--CHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCC
Q 008102           82 AAKCG--HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGE  159 (577)
Q Consensus        82 A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  159 (577)
                      |+..+  +.+++++|++.|++.+               ...|.+|.|||| |+..|+.++++.|++.|.++. ..|..|.
T Consensus       112 A~~~~~~~~e~v~lLl~~Gadin---------------~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~-~~d~~G~  174 (446)
T PHA02946        112 LSGTDDEVIERINLLVQYGAKIN---------------NSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR-IVDKFGK  174 (446)
T ss_pred             HHHcCCchHHHHHHHHHcCCCcc---------------cccCCCCCcHHH-HHHCCChHHHHHHHhcccccc-ccCCCCC
Confidence            99876  4899999999887632               135889999998 667799999999999998875 7888999


Q ss_pred             hHHHHHHHhC--CHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC-CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          160 TPLYMAAERG--FEKMLTEILENCPSVAHEGPSGKTALHAAAVNI-NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       160 tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      ||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..+ ++.++++.|++ +.+ ++.+|..|.||||+|+..
T Consensus       175 t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        175 NHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHh
Confidence            9999998765  468999999999999999999999999999872 37899999885 555 789999999999999999


Q ss_pred             Cc-HHHHHHHhcCCCCccc-------------------hhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCC
Q 008102          237 DR-NIIAELLLNSDKSLAY-------------------IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW  296 (577)
Q Consensus       237 g~-~~~v~~Ll~~~~~~~~-------------------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  296 (577)
                      ++ .++++.|++++.....                   ......|.||||+|+.+|+.+++++|+++++        .|+
T Consensus       253 ~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~  324 (446)
T PHA02946        253 LSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICE  324 (446)
T ss_pred             CChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccc
Confidence            88 5899999998754210                   0011257799999999999999999999764        468


Q ss_pred             chhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccc
Q 008102          297 NVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVP  352 (577)
Q Consensus       297 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL  352 (577)
                      ||||+|+.+++.+++++|+.+    |+++|.+ .+|+||||+|++.++...+..+|
T Consensus       325 t~L~~A~~~~~~~~v~~Ll~~----ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll  375 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYLLFN----HFSVDSV-VNGHTCMSECVRLNNPVILSKLM  375 (446)
T ss_pred             cHHHHHHHhCHHHHHHHHHHC----CCCCCCc-cccccHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999998    9999986 58999999999999555444444

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.5e-42  Score=354.13  Aligned_cols=327  Identities=21%  Similarity=0.200  Sum_probs=259.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHhhhhcCCc--cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHH
Q 008102            3 MDPLLYEAAAKGEIEPFKEISNVLGRV--VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLH   80 (577)
Q Consensus         3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh   80 (577)
                      |+..|..|+..|+.+.++.|++.+...  ....+|.||||.|+..|+   .+++++|++    .+..++..+..|.||||
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~---~~iv~~Ll~----~Ga~~n~~~~~~~t~L~   73 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGD---AKIVELFIK----HGADINHINTKIPHPLL   73 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCC---HHHHHHHHH----CCCCCCCCCCCCCCHHH
Confidence            467889999999999999998765443  344478899999999999   999999876    56777888888999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102           81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET  160 (577)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  160 (577)
                      .|+..|+.+++++|++.|++..                          ..+....+.++++.|++.|.+++ .++..|.|
T Consensus        74 ~A~~~~~~~iv~~Ll~~g~~~~--------------------------~~~~~~~~~~~i~~ll~~g~d~n-~~~~~g~T  126 (434)
T PHA02874         74 TAIKIGAHDIIKLLIDNGVDTS--------------------------ILPIPCIEKDMIKTILDCGIDVN-IKDAELKT  126 (434)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCC--------------------------cchhccCCHHHHHHHHHCcCCCC-CCCCCCcc
Confidence            9999999999999988765421                          11223456788899998888775 57778899


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHH
Q 008102          161 PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI  240 (577)
Q Consensus       161 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  240 (577)
                      |||+|+..|+.+++++|+++|++++.++..|.||||.|+.. ++.+++++|++.+.+ .+..+..|.||||+|+..|+.+
T Consensus       127 ~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~g~~-~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        127 FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEKGAY-ANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence            99999999999999999999999888888899999999988 889999999988877 5778888999999999999999


Q ss_pred             HHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcC-ChhHHHHHHhccc
Q 008102          241 IAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF-DASDLKHLLNNYP  319 (577)
Q Consensus       241 ~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~~Ll~~~~  319 (577)
                      ++++|++.+++..  ..+..|.||||.|+..+. +.+++|+ .+.+ ++.+|..|+||||+|+..+ +.+++++|+++  
T Consensus       205 iv~~Ll~~g~~i~--~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~--  277 (434)
T PHA02874        205 CIKLLIDHGNHIM--NKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYH--  277 (434)
T ss_pred             HHHHHHhCCCCCc--CCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC--
Confidence            9999999888764  233478899999988765 5666666 3555 6778888999999998865 67889999888  


Q ss_pred             cccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCC-CChHHHHh
Q 008102          320 IVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQN-ISVKHITR  374 (577)
Q Consensus       320 ~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G-~t~l~~a~  374 (577)
                        |+++|.+|..|+||||+|++.++...+.+.|+..++.++..+..+ .+++..+.
T Consensus       278 --gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~  331 (434)
T PHA02874        278 --KADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIE  331 (434)
T ss_pred             --cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHH
Confidence              888899999999999999887755566667777777666655544 33344433

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-41  Score=349.58  Aligned_cols=305  Identities=22%  Similarity=0.224  Sum_probs=268.9

Q ss_pred             cceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhh
Q 008102           38 ILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQML  117 (577)
Q Consensus        38 ~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l  117 (577)
                      .|+.|+..|+   .+.++.+++   ..+..++..+.+|.||||.|+..|+.++|++|++.|++                +
T Consensus         4 ~l~~ai~~gd---~~~v~~ll~---~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~----------------~   61 (434)
T PHA02874          4 DLRMCIYSGD---IEAIEKIIK---NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD----------------I   61 (434)
T ss_pred             HHHHHHhcCC---HHHHHHHHH---cCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------C
Confidence            5778999999   999999855   46677788889999999999999999999999998876                4


Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 008102          118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA  197 (577)
Q Consensus       118 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  197 (577)
                      +..+..|.||||.|+..|+.+++++|+++|.+...           .+......++++.|++.|++++.++..|.||||.
T Consensus        62 n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~-----------~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~  130 (434)
T PHA02874         62 NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI-----------LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHY  130 (434)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-----------chhccCCHHHHHHHHHCcCCCCCCCCCCccHHHH
Confidence            56788899999999999999999999999876531           2334467899999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHH
Q 008102          198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVV  277 (577)
Q Consensus       198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv  277 (577)
                      |+.. ++.+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++
T Consensus       131 A~~~-~~~~~v~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~g~~~iv  206 (434)
T PHA02874        131 AIKK-GDLESIKMLFEYGAD-VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VKDNNGESPLHNAAEYGDYACI  206 (434)
T ss_pred             HHHC-CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHH
Confidence            9999 999999999999988 68899999999999999999999999999998875  3345899999999999999999


Q ss_pred             HHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCccc
Q 008102          278 EEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGG  357 (577)
Q Consensus       278 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~  357 (577)
                      ++|++.+++ ++.++..|+||||.|+..+. +.+++|+ .    +.++|.+|.+|+||||+|+..+....+.++|+++|+
T Consensus       207 ~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~----~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ga  279 (434)
T PHA02874        207 KLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLI-N----NASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKA  279 (434)
T ss_pred             HHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHH-c----CCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcC
Confidence            999999998 67889999999999999765 5666666 3    788999999999999999998766788899999999


Q ss_pred             chhhhhhCCCChHHHHh-cC-CcchHHHHHH
Q 008102          358 DYQAVNKQNISVKHITR-YG-FPQLEQEIRE  386 (577)
Q Consensus       358 d~~~~n~~G~t~l~~a~-~~-~~~~~~~l~~  386 (577)
                      |++.+|+.|+||+++|. .+ ..++++.+..
T Consensus       280 d~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        280 DISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence            99999999999999998 43 4556665554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-40  Score=351.27  Aligned_cols=342  Identities=17%  Similarity=0.110  Sum_probs=267.4

Q ss_pred             HcCCcHHHHHhhhhc-CCc-cc-cCCCCccceeeee--cCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhC
Q 008102           12 AKGEIEPFKEISNVL-GRV-VT-HNNKNTILHVNII--SRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCG   86 (577)
Q Consensus        12 ~~g~~~~v~~Ll~~~-~~~-~~-~~~g~t~Lh~A~~--~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g   86 (577)
                      +.++.+++++|++.+ +++ .. +..|.||||.|+.  +++   .+++++|++    .+..++.+|..|.||||+|++.|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~---~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g  223 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVD---IDILEWLCN----NGVNVNLQNNHLITPLHTYLITG  223 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCC---HHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcC
Confidence            568999999999998 776 33 6689999998754  467   899999987    68889999999999999999999


Q ss_pred             C--HHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH---HcCCHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102           87 H--ASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM---QHRSLDVVKILIKEDPAVPYSTNGCGETP  161 (577)
Q Consensus        87 ~--~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  161 (577)
                      +  .++|++|++.|++                ++.+|..|.||||.|+   ..++.++++.|++...... ..  ...++
T Consensus       224 ~~~~eIVklLLe~GAD----------------VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~-~~--~~~~~  284 (764)
T PHA02716        224 NVCASVIKKIIELGGD----------------MDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNK-VK--NIPMI  284 (764)
T ss_pred             CCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccc-cc--cchhh
Confidence            5  5999999999887                4678999999999886   4689999999998643211 11  12233


Q ss_pred             HH---HHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh--
Q 008102          162 LY---MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN-INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY--  235 (577)
Q Consensus       162 L~---~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~--  235 (577)
                      ++   .|++.|+.+++++|+++|++++.+|..|+||||+|+.. .++.+++++|++.+.+ ++.+|..|+||||+|+.  
T Consensus       285 L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~l  363 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSML  363 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhh
Confidence            43   47889999999999999999999999999999998653 2678999999999987 78999999999999865  


Q ss_pred             ------------cCcHHHHHHHhcCCCCccchhcCCCCCcchhH----hhhcCcHHHHHHHHhhCCcccc-------ccc
Q 008102          236 ------------FDRNIIAELLLNSDKSLAYIVDNDRKMTALHL----AAGQGKLRVVEEIISYCPECCE-------LVD  292 (577)
Q Consensus       236 ------------~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~----A~~~g~~~iv~~Ll~~~~~~~~-------~~d  292 (577)
                                  .++.+++++|+++|++++  ..+..|.||||.    |...++.++++.|++.+.....       ..+
T Consensus       364 av~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~  441 (764)
T PHA02716        364 SVVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLI  441 (764)
T ss_pred             hhhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhh
Confidence                        368999999999999886  344589999994    3345789999999987643110       112


Q ss_pred             CCCCch--hhHHHhcCChhHHH------------------HHHhccccccccccCCCCCCCcHHHHHHHhCCccce----
Q 008102          293 GRGWNV--LHFAMVSFDASDLK------------------HLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFH----  348 (577)
Q Consensus       293 ~~g~t~--Lh~A~~~~~~~~v~------------------~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~----  348 (577)
                      ..+.++  +|.++..+..+...                  .++..    +.++|.+|..|+||||+|+..++...+    
T Consensus       442 ~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~----~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~  517 (764)
T PHA02716        442 RVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIE----RYNNAVCETSGMTPLHVSIISHTNANIVMDS  517 (764)
T ss_pred             ccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHh----hccccccCCCCCCHHHHHHHcCCccchhHHH
Confidence            223333  45555444433222                  22222    567889999999999999998854333    


Q ss_pred             eccccCcccchhhhhhCCCChHHHHh-cCCc-----chHHHHHH
Q 008102          349 RIVPWNVGGDYQAVNKQNISVKHITR-YGFP-----QLEQEIRE  386 (577)
Q Consensus       349 ~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~-----~~~~~l~~  386 (577)
                      .++|++.|+|+|.+|++|+||+++|. .++.     ++++.|.+
T Consensus       518 ~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~  561 (764)
T PHA02716        518 FVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILD  561 (764)
T ss_pred             HHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHh
Confidence            48899999999999999999999999 5554     66676665

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=9.1e-41  Score=336.43  Aligned_cols=304  Identities=26%  Similarity=0.294  Sum_probs=273.4

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA   82 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A   82 (577)
                      +.+||.|+.....+.++.|++.|.+. ..+..+.+|+|+|+..|+   .++.+.|+++    +.+++..+..|.||||+|
T Consensus        89 n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~---~s~L~~Ll~~----~~dvnl~de~~~TpLh~A  161 (929)
T KOG0510|consen   89 NTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGN---YSCLKLLLDY----GADVNLEDENGFTPLHLA  161 (929)
T ss_pred             CchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccch---HHHHHHHHHh----cCCccccccCCCchhhHH
Confidence            56799999999999999999999988 666689999999999999   9999999883    588899999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCC
Q 008102           83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK-----EDPAVPYSTNGC  157 (577)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~~  157 (577)
                      |..++.|..+.|++.++++.                ..|.+|++|+|.|+++|..|+.+..+.     +...++ ..+..
T Consensus       162 ~~~~~~E~~k~Li~~~a~~~----------------K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in-~~~n~  224 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADPC----------------KSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHIN-FDNNE  224 (929)
T ss_pred             HhcChHHHHHHHHhcCCCCC----------------cccCcCCchHHHHHHhcchhhhhhhhccccchhhcccc-cccCC
Confidence            99999998899999988854                378899999999999999999999998     333444 56677


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCC---------------CCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSV---------------AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGET  222 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~  222 (577)
                      |.||||.|++.|+.++++.+++++...               +..|.+|.||||+|+++ |+++.++.|+..|.+ ++.+
T Consensus       225 ~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~-G~~~svd~Ll~~Ga~-I~~k  302 (929)
T KOG0510|consen  225 KATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ-GGPESVDNLLGFGAS-INSK  302 (929)
T ss_pred             CCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc-CChhHHHHHHHcCCc-cccc
Confidence            999999999999999999999988432               34688999999999999 999999999999999 7999


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHhc-CCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccc--cccCCCCchh
Q 008102          223 DRYGWTPLHYASYFDRNIIAELLLN-SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE--LVDGRGWNVL  299 (577)
Q Consensus       223 d~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~--~~d~~g~t~L  299 (577)
                      +.++.||||.|+..|+.+.++.|++ .+... ....+..|+||||.|+++|+.++++.|+++|+...+  ..|..|.|||
T Consensus       303 n~d~~spLH~AA~yg~~ntv~rLL~~~~~rl-lne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL  381 (929)
T KOG0510|consen  303 NKDEESPLHFAAIYGRINTVERLLQESDTRL-LNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL  381 (929)
T ss_pred             CCCCCCchHHHHHcccHHHHHHHHhCcCccc-cccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhh
Confidence            9999999999999999999999999 33333 223345899999999999999999999999999665  5599999999


Q ss_pred             hHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHH
Q 008102          300 HFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL  338 (577)
Q Consensus       300 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~  338 (577)
                      |.|+..|+..++++|+.+    |+++..+|+.|.|++++
T Consensus       382 H~Aa~~g~~~av~~Li~~----Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  382 HLAAKYGNTSAVQKLISH----GADIGVKNKKGKSAFDT  416 (929)
T ss_pred             hHHHHhccHHHHHHHHHc----CCceeeccccccccccc
Confidence            999999999999999999    99999999999999996

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.6e-40  Score=339.65  Aligned_cols=358  Identities=12%  Similarity=0.030  Sum_probs=281.6

Q ss_pred             CCHHHHHHHHcC---CcHHHHHhhhhcCCc-cccCCCCccceeeeecC--CccchHHHHHHHHHHhhCccccccccCCCC
Q 008102            3 MDPLLYEAAAKG---EIEPFKEISNVLGRV-VTHNNKNTILHVNIISR--DRETIVSTEFVEQILEMCPSLLQSVNAKGD   76 (577)
Q Consensus         3 ~~~~L~~Aa~~g---~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g--~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~   76 (577)
                      ..++||.|+..|   +.++++.|++.|+++ .++..|.||||+|+..|  +   .+++++|++.  ..+...+..+..++
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~---~eIv~~Ll~~--~~~~~~~~~~~~~d  115 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVK---SQIVHLLISS--YSNASNELTSNIND  115 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCc---HHHHHHHHhc--CCCCCcccccccCC
Confidence            357899999997   589999999999988 67779999999998866  7   8999999772  11334455777789


Q ss_pred             cHHHHHHH--hCCHHHHHHHHHHHHcCCchhhccccchHHHhhccC-CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           77 APLHVAAK--CGHASVVTALIEIAKKQPKELESGVESTARQMLGMT-NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        77 t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      +|||.++.  +++.++|++|++.+...+.           +..+.+ +..|.+|++++...++.++|++|+++|+++...
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~-----------~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~  184 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPS-----------KNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGY  184 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChh-----------hhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccc
Confidence            99999888  8999999999974432111           011112 247899999999999999999999999988411


Q ss_pred             ------CCCCCC-hHHHHH------HHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHH--HHHcCCCHHHHHHHHh-----
Q 008102          154 ------TNGCGE-TPLYMA------AERGFEKMLTEILENCPSVAHEGPSGKTALHA--AAVNINSIDVVKLLLD-----  213 (577)
Q Consensus       154 ------~~~~g~-tpL~~A------~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~--A~~~~~~~~~~~~Ll~-----  213 (577)
                            .+..+. |.||++      ...++.|++++|+++|++++.+|..|.||||+  +... ++.|++++|++     
T Consensus       185 ~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~-~~~eiv~~Li~~~~~~  263 (672)
T PHA02730        185 VFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCST-IDIEIVKLLIKDVDTC  263 (672)
T ss_pred             ccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCc-ccHHHHHHHHhccccc
Confidence                  233344 445533      45678999999999999999999999999995  4334 66999999999     


Q ss_pred             ---------------------------hCCCcccc--------------------CCCCCCc------------------
Q 008102          214 ---------------------------KKKSLIGE--------------------TDRYGWT------------------  228 (577)
Q Consensus       214 ---------------------------~~~~~~~~--------------------~d~~g~t------------------  228 (577)
                                                 .+.+. ..                    .+..|.+                  
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~  342 (672)
T PHA02730        264 SVYDDISQPYIRGVLADYLNKRFRVTPYNVDM-EIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESI  342 (672)
T ss_pred             cccccccchhhhhhHHHhhhhhhhcccCCcch-HHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhH
Confidence                                       33332 11                    4555544                  


Q ss_pred             ---HHHHHHhcC---cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc----HHHHHHHHhhCCc-ccccccCCCCc
Q 008102          229 ---PLHYASYFD---RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK----LRVVEEIISYCPE-CCELVDGRGWN  297 (577)
Q Consensus       229 ---pL~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~-~~~~~d~~g~t  297 (577)
                         .||.-...+   +.+++++|+++|++++.  + ..|.||||+|+..++    .+++++|+++|++ .++.+|..|+|
T Consensus       343 ~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T  419 (672)
T PHA02730        343 VQAMLINYLHYGDMVSIPILRCMLDNGATMDK--T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRL  419 (672)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCc
Confidence               566666655   58999999999999973  3 489999999998875    8999999999974 47888999999


Q ss_pred             hhhH---HHhcC---------ChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhh-
Q 008102          298 VLHF---AMVSF---------DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK-  364 (577)
Q Consensus       298 ~Lh~---A~~~~---------~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~-  364 (577)
                      |||.   |...+         ..+++++|+.+    |+++|.+|..|+||||+|+..+ ...+.++|+++|+|+|.+|+ 
T Consensus       420 ~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~----GADINakD~~G~TPLh~Aa~~~-~~eive~LI~~GAdIN~~d~~  494 (672)
T PHA02730        420 CMYGLILSRFNNCGYHCYETILIDVFDILSKY----MDDIDMIDNENKTLLYYAVDVN-NIQFARRLLEYGASVNTTSRS  494 (672)
T ss_pred             hHhHHHHHHhccccccccchhHHHHHHHHHhc----ccchhccCCCCCCHHHHHHHhC-CHHHHHHHHHCCCCCCCCCCc
Confidence            9994   33332         23569999998    9999999999999999999998 56777889999999999997 


Q ss_pred             CCCChHHHHhc---CCcchHHHHHH
Q 008102          365 QNISVKHITRY---GFPQLEQEIRE  386 (577)
Q Consensus       365 ~G~t~l~~a~~---~~~~~~~~l~~  386 (577)
                      .|.||++.|+.   ++.++++.|.+
T Consensus       495 ~g~TaL~~Aa~~~~~~~eIv~~LLs  519 (672)
T PHA02730        495 IINTAIQKSSYRRENKTKLVDLLLS  519 (672)
T ss_pred             CCcCHHHHHHHhhcCcHHHHHHHHH
Confidence            59999999973   56777777766

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.3e-39  Score=342.09  Aligned_cols=354  Identities=16%  Similarity=0.074  Sum_probs=262.0

Q ss_pred             CHHHHHHHHc---CCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHh-hCccccccccCCCCcH
Q 008102            4 DPLLYEAAAK---GEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILE-MCPSLLQSVNAKGDAP   78 (577)
Q Consensus         4 ~~~L~~Aa~~---g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~-~~~~~~~~~~~~g~t~   78 (577)
                      .++||.|++.   |+.+.++.|++.|.+. ..+..|.||||.|+..|+   .++++.+++.+- ..+. .+..+  ..++
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~---~~v~~~~~~~Ll~~~~~-~n~~~--~~~~  106 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRH---VKVNKDIAMALLEATGY-SNIND--FNIF  106 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC---hhHHHHHHHHHHhccCC-CCCCC--cchH
Confidence            4779987555   8899999999988887 556689999999999998   766554443322 1221 22222  2367


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH--HcCCHHHHHHHHhcCCCCCcC--C
Q 008102           79 LHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM--QHRSLDVVKILIKEDPAVPYS--T  154 (577)
Q Consensus        79 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~--~  154 (577)
                      +|.|+..|+.++|++|++.|++                ++.+|.+|.||||.|+  ..|+.+++++|+++|++++..  .
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gad----------------in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~  170 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFD----------------LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDED  170 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCC----------------CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccc
Confidence            7888899999999999998877                4678999999999654  578999999999999988632  1


Q ss_pred             CCCC-----------ChHHHHHHH-----------hCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH--HHHHH
Q 008102          155 NGCG-----------ETPLYMAAE-----------RGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI--DVVKL  210 (577)
Q Consensus       155 ~~~g-----------~tpL~~A~~-----------~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~--~~~~~  210 (577)
                      +..|           .||||+|+.           .++.+++++|+++|++++..|..|.||||+|+.+ ++.  ++++.
T Consensus       171 ~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~-g~~~~eivk~  249 (661)
T PHA02917        171 DEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKS-SHIDIDIVKL  249 (661)
T ss_pred             cccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHc-CCCcHHHHHH
Confidence            2233           599999986           4689999999999999999999999999999999 764  79999


Q ss_pred             HHhhCCCcc---ccCCCCCCcHHHHHHhcC---------cHHHHHHHhcCCCCccch------h-----------cCCCC
Q 008102          211 LLDKKKSLI---GETDRYGWTPLHYASYFD---------RNIIAELLLNSDKSLAYI------V-----------DNDRK  261 (577)
Q Consensus       211 Ll~~~~~~~---~~~d~~g~tpL~~A~~~g---------~~~~v~~Ll~~~~~~~~~------~-----------~~~~g  261 (577)
                      |++ +.+..   ...|..|.+|+++|+..+         +.++++.|++.|++....      .           ....+
T Consensus       250 Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (661)
T PHA02917        250 LMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNS  328 (661)
T ss_pred             HHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhch
Confidence            975 55422   245667888888888421         678999999998753110      0           01123


Q ss_pred             CcchhHhh---hcCc--HHHHHHHHhhCCcc-----------------------------cccccCCCCchhhHHHhcCC
Q 008102          262 MTALHLAA---GQGK--LRVVEEIISYCPEC-----------------------------CELVDGRGWNVLHFAMVSFD  307 (577)
Q Consensus       262 ~tpL~~A~---~~g~--~~iv~~Ll~~~~~~-----------------------------~~~~d~~g~t~Lh~A~~~~~  307 (577)
                      .+++|.+.   ..|.  .++++.|+++|++.                             ....+..|+||||.|++.+.
T Consensus       329 ~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~  408 (661)
T PHA02917        329 DVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNY  408 (661)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcc
Confidence            33444333   3454  44777777766541                             12234568999999875432


Q ss_pred             -----------------------hhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhh
Q 008102          308 -----------------------ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK  364 (577)
Q Consensus       308 -----------------------~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~  364 (577)
                                             .++++.|+++    |+++|.+|..|+||||+|+..+ ...+.++|+++|+|++.+|.
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~----GAdIN~kd~~G~TpLh~Aa~~~-~~~~v~~Ll~~GAdin~~d~  483 (661)
T PHA02917        409 GCYNFYTYTYKKGLCDMSYACPILSTINICLPY----LKDINMIDKRGETLLHKAVRYN-KQSLVSLLLESGSDVNIRSN  483 (661)
T ss_pred             cchhhhhhhhhhccchhhhhhhhHHHHHHHHHC----CCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHHHCcCCCCCCCC
Confidence                                   4567888888    8999999999999999999887 56677888899999999999


Q ss_pred             CCCChHHHHhc--CCcchHHHHHH
Q 008102          365 QNISVKHITRY--GFPQLEQEIRE  386 (577)
Q Consensus       365 ~G~t~l~~a~~--~~~~~~~~l~~  386 (577)
                      .|.||+++|..  ++.++++.+..
T Consensus       484 ~G~T~L~~A~~~~~~~~iv~~LL~  507 (661)
T PHA02917        484 NGYTCIAIAINESRNIELLKMLLC  507 (661)
T ss_pred             CCCCHHHHHHHhCCCHHHHHHHHH
Confidence            99999999982  45666666665

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-39  Score=336.98  Aligned_cols=297  Identities=20%  Similarity=0.180  Sum_probs=261.1

Q ss_pred             eeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhC---CHHHHHHHHHHHHcCCchhhccccchHHHh
Q 008102           40 HVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCG---HASVVTALIEIAKKQPKELESGVESTARQM  116 (577)
Q Consensus        40 h~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  116 (577)
                      ..++..++   .+++++|++    .+..++..+..|.||||+|+..+   +.++++.|++.|++                
T Consensus        19 ~~~~~~~~---~~~v~~Ll~----~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad----------------   75 (471)
T PHA03095         19 LLNASNVT---VEEVRRLLA----AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD----------------   75 (471)
T ss_pred             HHcCCCCC---HHHHHHHHH----cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC----------------
Confidence            34566777   999999977    57888999999999999999999   99999999998877                


Q ss_pred             hccCCCCCCcHhHHHHHcC-CHHHHHHHHhcCCCCCcCCCCCCChHHHHHH--HhCCHHHHHHHHHhCCCCCCCCCCCCC
Q 008102          117 LGMTNDEKNTALHEAMQHR-SLDVVKILIKEDPAVPYSTNGCGETPLYMAA--ERGFEKMLTEILENCPSVAHEGPSGKT  193 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t  193 (577)
                      ++.++..|.||||+|+..| +.+++++|+++|++++ ..+..|.||||+|+  ..++.+++++|+++|++++..+..|.|
T Consensus        76 in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~t  154 (471)
T PHA03095         76 VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMT  154 (471)
T ss_pred             CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            5678889999999999999 5999999999999876 78888999999999  567899999999999999999999999


Q ss_pred             HHHHHHHcC-CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc--CcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          194 ALHAAAVNI-NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF--DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       194 ~L~~A~~~~-~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      |||.|+... .+.++++.|++.+.+. +..|..|.||||.++..  ++.++++.|++.|.+++  ..+..|.||||+|+.
T Consensus       155 pL~~a~~~~~~~~~iv~~Ll~~g~~~-~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh~Aa~  231 (471)
T PHA03095        155 PLAVLLKSRNANVELLRLLIDAGADV-YAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLHSMAT  231 (471)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHh
Confidence            999998862 3689999999999884 55599999999999875  77899999999999886  345589999999999


Q ss_pred             cCcH--HHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccce
Q 008102          271 QGKL--RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFH  348 (577)
Q Consensus       271 ~g~~--~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~  348 (577)
                      .|+.  .+++.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++.    |+++|.+|.+|+||||+|+..+ ...+
T Consensus       232 ~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~----gad~n~~~~~g~tpl~~A~~~~-~~~~  305 (471)
T PHA03095        232 GSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIAL----GADINAVSSDGNTPLSLMVRNN-NGRA  305 (471)
T ss_pred             cCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHhC-CHHH
Confidence            9875  688899999988 788999999999999999999999999998    9999999999999999999999 5677


Q ss_pred             eccccCcccchhhhhhCCCCh
Q 008102          349 RIVPWNVGGDYQAVNKQNISV  369 (577)
Q Consensus       349 ~~lL~~~g~d~~~~n~~G~t~  369 (577)
                      ..+|++.+++++.......+.
T Consensus       306 v~~LL~~~~~~~~~~~~~~~~  326 (471)
T PHA03095        306 VRAALAKNPSAETVAATLNTA  326 (471)
T ss_pred             HHHHHHhCCCHHHHHHHHHHH
Confidence            778888999988776654443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=5.9e-38  Score=331.07  Aligned_cols=346  Identities=16%  Similarity=0.107  Sum_probs=265.4

Q ss_pred             CCHHHHHHHH--cCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHH
Q 008102            3 MDPLLYEAAA--KGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPL   79 (577)
Q Consensus         3 ~~~~L~~Aa~--~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~L   79 (577)
                      ..++||.|+.  .++.+++++|++.|.++ ..+..|.||||+|+..|+. ..++++.|++    .|..++.++..|.|||
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~-~~eIVklLLe----~GADVN~kD~~G~TPL  251 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNV-CASVIKKIIE----LGGDMDMKCVNGMSPI  251 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCC-CHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence            3578998765  46789999999999988 6667999999999999960 0489999987    6888999999999999


Q ss_pred             HHHH---HhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhH---HHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           80 HVAA---KCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH---EAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        80 h~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh---~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      |.|+   ..++.++++.|++.+...                  ......++||   .|++.|+.++++.|+++|++++ .
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n------------------~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN-~  312 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGN------------------KVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH-Y  312 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhcccc------------------ccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee-c
Confidence            9885   468999999998863221                  0011123344   4789999999999999999876 6


Q ss_pred             CCCCCChHHHHHHH--hCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-------------CCCHHHHHHHHhhCCCc
Q 008102          154 TNGCGETPLYMAAE--RGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN-------------INSIDVVKLLLDKKKSL  218 (577)
Q Consensus       154 ~~~~g~tpL~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-------------~~~~~~~~~Ll~~~~~~  218 (577)
                      +|..|+||||+|+.  .++.+++++|+++|++++.+|..|.||||.|+..             .++.+++++|++.+.+ 
T Consensus       313 kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD-  391 (764)
T PHA02716        313 KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD-  391 (764)
T ss_pred             cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCC-
Confidence            78999999999875  4689999999999999999999999999998651             2678999999999988 


Q ss_pred             cccCCCCCCcHHHH----HHhcCcHHHHHHHhcCCCCccchh------cCCCCCcc--hhHhhhcCcHHHHHH-------
Q 008102          219 IGETDRYGWTPLHY----ASYFDRNIIAELLLNSDKSLAYIV------DNDRKMTA--LHLAAGQGKLRVVEE-------  279 (577)
Q Consensus       219 ~~~~d~~g~tpL~~----A~~~g~~~~v~~Ll~~~~~~~~~~------~~~~g~tp--L~~A~~~g~~~iv~~-------  279 (577)
                      ++.+|..|.||||.    |...++.+++++|++.+.......      ....+.+|  +|.++..+..+....       
T Consensus       392 In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~  471 (764)
T PHA02716        392 ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPY  471 (764)
T ss_pred             CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhc
Confidence            78999999999994    233577999999999765321100      01122333  556665544333222       


Q ss_pred             -----------HHhhCCcccccccCCCCchhhHHHhcCChh-----HHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          280 -----------IISYCPECCELVDGRGWNVLHFAMVSFDAS-----DLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       280 -----------Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~-----~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                                 ++..+.+ .+..|..|+||||+|+.+|+.+     ++++|++.    |+++|.+|.+|+||||+|+++|
T Consensus       472 ~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~----GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        472 DSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI----QYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             cccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC----CCCCcccCCCCCCHHHHHHHcC
Confidence                       2222333 5667899999999999998875     45999998    9999999999999999999998


Q ss_pred             Cc----cceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHH
Q 008102          344 RD----SFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEI  384 (577)
Q Consensus       344 ~~----~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l  384 (577)
                      +.    ..+.++|+++|++++...      +.++. ..+.+....+
T Consensus       547 ~~~~~~~eIvk~LL~~ga~~~~~~------l~~~~~~~~~~~~~ll  586 (764)
T PHA02716        547 RLSGHQWYIVKNILDKRPNVDIVI------IFLDKCYANGKFPSLL  586 (764)
T ss_pred             CccccHHHHHHHHHhcCCCcchHH------HHHHhhhhhhHHHHHH
Confidence            53    256789999999999873      56665 4444444433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.1e-38  Score=333.26  Aligned_cols=283  Identities=25%  Similarity=0.325  Sum_probs=254.5

Q ss_pred             HHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHH-
Q 008102           52 VSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE-  130 (577)
Q Consensus        52 ~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~-  130 (577)
                      ++++.+++    .+...+..+..+.||||.|+..|+.++|++|++.|++                ++..+..|.||||+ 
T Consensus        16 ~~~~~~~~----~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~----------------~~~~~~~~~t~L~~~   75 (480)
T PHA03100         16 KNIKYIIM----EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD----------------INSSTKNNSTPLHYL   75 (480)
T ss_pred             HHHHHHHh----cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC----------------CCCccccCcCHHHHH
Confidence            44555543    4566677888999999999999999999999998876                34577889999999 


Q ss_pred             ----HHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHH--HhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC-
Q 008102          131 ----AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAA--ERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN-  203 (577)
Q Consensus       131 ----A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-  203 (577)
                          |+..|+.++++.|++.|+++ ...+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||.|+.. + 
T Consensus        76 ~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~  153 (480)
T PHA03100         76 SNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES-NK  153 (480)
T ss_pred             HHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CC
Confidence                99999999999999999988 578888999999999  99999999999999999999999999999999999 8 


Q ss_pred             -CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCC------CcchhHhhhcCc--H
Q 008102          204 -SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK------MTALHLAAGQGK--L  274 (577)
Q Consensus       204 -~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g------~tpL~~A~~~g~--~  274 (577)
                       +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|+++..  .+..|      .||||.|+..|+  .
T Consensus       154 ~~~~iv~~Ll~~g~d-in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~  230 (480)
T PHA03100        154 IDLKILKLLIDKGVD-INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA--GDIETLLFTIFETPLHIAACYNEITL  230 (480)
T ss_pred             ChHHHHHHHHHCCCC-cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC--CCCCCCcHHHHHhHHHHHHHhCcCcH
Confidence             99999999999988 688888999999999999999999999999988753  23345      899999999999  9


Q ss_pred             HHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102          275 RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN  354 (577)
Q Consensus       275 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~  354 (577)
                      +++++|+++|.+ ++.+|..|+||||+|+..++.+++++|++.    |+++|.+|.+|+||||+|+..+ ...+.++|++
T Consensus       231 ~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~----gad~n~~d~~g~tpl~~A~~~~-~~~iv~~Ll~  304 (480)
T PHA03100        231 EVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDL----GANPNLVNKYGDTPLHIAILNN-NKEIFKLLLN  304 (480)
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHhC-CHHHHHHHHh
Confidence            999999999988 788999999999999999999999999998    9999999999999999999998 6778889999


Q ss_pred             cccchhhhhhC
Q 008102          355 VGGDYQAVNKQ  365 (577)
Q Consensus       355 ~g~d~~~~n~~  365 (577)
                      +|++++..+..
T Consensus       305 ~g~~i~~i~~~  315 (480)
T PHA03100        305 NGPSIKTIIET  315 (480)
T ss_pred             cCCCHHHHHHH
Confidence            99999987653

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.9e-38  Score=324.65  Aligned_cols=344  Identities=17%  Similarity=0.125  Sum_probs=267.7

Q ss_pred             HHHHhhhh--cCCccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhC--CHHHHHH
Q 008102           18 PFKEISNV--LGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCG--HASVVTA   93 (577)
Q Consensus        18 ~v~~Ll~~--~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~   93 (577)
                      .++..++.  +++...++.|+||||+|+.+|+....+++++|++    .|..++.+|..|.||||+|+..+  +.++|++
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            44555553  3444566689999999999973222899999987    68999999999999999999977  7999999


Q ss_pred             HHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHH--cCCHHHHHHHHh-cCCCCCcCCC----CCCChHHHHHH
Q 008102           94 LIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ--HRSLDVVKILIK-EDPAVPYSTN----GCGETPLYMAA  166 (577)
Q Consensus        94 Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~-~~~~~~~~~~----~~g~tpL~~A~  166 (577)
                      |++.|+...              .+..+..+.+|||.++.  +++.+++++|++ .+.++....+    ..|.+|++++.
T Consensus        98 Ll~~~~~~~--------------~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~  163 (672)
T PHA02730         98 LISSYSNAS--------------NELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT  163 (672)
T ss_pred             HHhcCCCCC--------------cccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc
Confidence            999876532              24467778999999998  899999999997 4444443322    47999999999


Q ss_pred             HhCCHHHHHHHHHhCCCCC--------CCCCCCCCHHHHHHHc-----CCCHHHHHHHHhhCCCccccCCCCCCcHHHH-
Q 008102          167 ERGFEKMLTEILENCPSVA--------HEGPSGKTALHAAAVN-----INSIDVVKLLLDKKKSLIGETDRYGWTPLHY-  232 (577)
Q Consensus       167 ~~g~~~~v~~Ll~~~~~~~--------~~~~~g~t~L~~A~~~-----~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~-  232 (577)
                      ..++.++|++|+++|++++        ..++.+.|.||+.+..     .++.|++++|+++|.+ ++.+|..|.||||+ 
T Consensus       164 ~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~  242 (672)
T PHA02730        164 PNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYY  242 (672)
T ss_pred             CCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHH
Confidence            9999999999999999984        2223344556644332     2689999999999998 79999999999995 


Q ss_pred             -HHhcCcHHHHHHHhc--------------------------------CCCCccch------------------hcCCCC
Q 008102          233 -ASYFDRNIIAELLLN--------------------------------SDKSLAYI------------------VDNDRK  261 (577)
Q Consensus       233 -A~~~g~~~~v~~Ll~--------------------------------~~~~~~~~------------------~~~~~g  261 (577)
                       +...|+.+++++|++                                ++.+....                  ..+..|
T Consensus       243 ~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  322 (672)
T PHA02730        243 WSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSRE  322 (672)
T ss_pred             HHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccc
Confidence             556677999999999                                45554210                  012234


Q ss_pred             Cc---------------------chhHhhhcC---cHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC----hhHHHH
Q 008102          262 MT---------------------ALHLAAGQG---KLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD----ASDLKH  313 (577)
Q Consensus       262 ~t---------------------pL~~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~----~~~v~~  313 (577)
                      .+                     .||.-...+   +.++++.|+++|++ ++.. ..|+||||+|+..+.    .+++++
T Consensus       323 ~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAd-IN~k-~~G~TpLH~Aa~~nnn~i~~eIvel  400 (672)
T PHA02730        323 YNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGAT-MDKT-TDNNYPLHDYFVNNNNIVDVNVVRF  400 (672)
T ss_pred             cchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCC-CCcC-CCCCcHHHHHHHHcCCcchHHHHHH
Confidence            33                     566655544   69999999999999 5554 789999999998875    799999


Q ss_pred             HHhccccccc--cccCCCCCCCcHHHH---HHHhCC----cc----ceeccccCcccchhhhhhCCCChHHHHh-cCCcc
Q 008102          314 LLNNYPIVRN--LINDKDKEGNTPLHL---LAALCR----DS----FHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQ  379 (577)
Q Consensus       314 Ll~~~~~~~~--~~n~~d~~G~TpLh~---A~~~~~----~~----~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~  379 (577)
                      |+++    |+  ++|.+|.+|.||||.   |...+.    .+    .+.++|+.+|+|+|++|+.|+|||++|+ .++.+
T Consensus       401 LIs~----Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~e  476 (672)
T PHA02730        401 IVEN----NGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQ  476 (672)
T ss_pred             HHHc----CCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHH
Confidence            9998    76  699999999999994   332221    01    2468999999999999999999999999 67778


Q ss_pred             hHHHHHH
Q 008102          380 LEQEIRE  386 (577)
Q Consensus       380 ~~~~l~~  386 (577)
                      +++.|.+
T Consensus       477 ive~LI~  483 (672)
T PHA02730        477 FARRLLE  483 (672)
T ss_pred             HHHHHHH
Confidence            8888876

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-38  Score=331.85  Aligned_cols=281  Identities=21%  Similarity=0.241  Sum_probs=252.9

Q ss_pred             HHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcC---CHHHHHHHHhcCCCCCcCCCC
Q 008102           80 HVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHR---SLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      ..++..++.++|++|++.|++                ++.++..|.||||+|+..+   +.++++.|++.|++++ .++.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~----------------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin-~~~~   81 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD----------------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN-APER   81 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC----------------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCC-CCCC
Confidence            456778899999999998876                4668899999999999999   9999999999999987 6677


Q ss_pred             CCChHHHHHHHhC-CHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          157 CGETPLYMAAERG-FEKMLTEILENCPSVAHEGPSGKTALHAAAVN-INSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       157 ~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      .|.||||+|+..| +.+++++|+++|++++..+..|.||||.|+.. .++.++++.|++.+.+ ++..|..|.||||+|+
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~  160 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLL  160 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence            8999999999999 59999999999999999999999999999942 1678999999999988 7889999999999998


Q ss_pred             hcC--cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc--CcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCCh--
Q 008102          235 YFD--RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ--GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA--  308 (577)
Q Consensus       235 ~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~--  308 (577)
                      ..+  +.+++++|++.|+++...  +..|.||||.|+..  ++.++++.|++.+.+ ++.+|..|+||||+|+..+..  
T Consensus       161 ~~~~~~~~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~  237 (471)
T PHA03095        161 KSRNANVELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKR  237 (471)
T ss_pred             HcCCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchH
Confidence            876  589999999999988654  55899999999864  789999999999998 788999999999999999875  


Q ss_pred             hHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       309 ~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      .+++.+++.    |.++|.+|.+|+||||+|+..| ...+.++|++.|+|++.+|..|+||+++|. .++.++++.|.+
T Consensus       238 ~~v~~ll~~----g~din~~d~~g~TpLh~A~~~~-~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        238 SLVLPLLIA----GISINARNRYGQTPLHYAAVFN-NPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             HHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            578888888    9999999999999999999998 566777888999999999999999999998 888888887776

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.3e-39  Score=347.21  Aligned_cols=364  Identities=24%  Similarity=0.321  Sum_probs=288.0

Q ss_pred             HHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHH
Q 008102            5 PLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAA   83 (577)
Q Consensus         5 ~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~   83 (577)
                      ++||.|+..|+.+++.+++..+... ..+-.|.||+|.|+..+.   .++.+++++    .+..+..++....||+|+|.
T Consensus       244 ~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~---~e~~~~ll~----~ga~~~~~~~~~kt~l~~a~  316 (1143)
T KOG4177|consen  244 TPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQ---VEVCKLLLQ----NGADVLAKARDDQTPLHIAS  316 (1143)
T ss_pred             cHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccch---hhhHhhhhc----cCcccccccccccChhhhhc
Confidence            4677888888888888888777766 444467788888888888   888777766    56667777777778888888


Q ss_pred             HhCCHHHHHHHHHHHHcCCchhhccccch--------H---------HHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           84 KCGHASVVTALIEIAKKQPKELESGVEST--------A---------RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~--------~---------~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      +.|+.++++.+++.++.++.....+....        .         ...-...+..|.||+|.|++.|..++++.++++
T Consensus       317 ~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~  396 (1143)
T KOG4177|consen  317 RLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEA  396 (1143)
T ss_pred             ccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhc
Confidence            88877888877777665433111111100        0         011123445677888888888888888888888


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC-CHHHHHHHHhhCCCccccCCCC
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN-SIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      +.+. ...+..|.||||.|+..++.++++.+++++++++..+..|.|++|.|+.. + ..+....+++.+.+ ++..-..
T Consensus       397 ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~-g~~~~~~~~l~~~g~~-~n~~s~~  473 (1143)
T KOG4177|consen  397 GADP-NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK-GRYLQIARLLLQYGAD-PNAVSKQ  473 (1143)
T ss_pred             cCCc-ccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc-ccHhhhhhhHhhcCCC-cchhccc
Confidence            7774 47777788888888888888888888888888888888888888888888 5 67777777776666 6777888


Q ss_pred             CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhc
Q 008102          226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS  305 (577)
Q Consensus       226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  305 (577)
                      |.||||.|+..|+.++++.+++.++..+  .+...+.+++|.|...+...+++.+++++.. +..++..|+||||.|+.+
T Consensus       474 G~T~Lhlaaq~Gh~~~~~llle~~~~~~--~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  474 GFTPLHLAAQEGHTEVVQLLLEGGANDN--LDAKKGLTPLHLAADEDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             cCcchhhhhccCCchHHHHhhhcCCccC--ccchhccchhhhhhhhhhHHHHHHHhhcCCc-eehhcccccchHHHHHhc
Confidence            8888888888888888888888774433  3344688888888888888888888888888 678899999999999999


Q ss_pred             CChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHH
Q 008102          306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEI  384 (577)
Q Consensus       306 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l  384 (577)
                      |+..+|++|+++    |++++.+|+.|+||||.|+..| ...+..+|.++|+++|+.|.+|.||+++|. .++.++.+.+
T Consensus       551 g~v~~VkfLLe~----gAdv~ak~~~G~TPLH~Aa~~G-~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  551 GNVDLVKFLLEH----GADVNAKDKLGYTPLHQAAQQG-HNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLL  625 (1143)
T ss_pred             CCchHHHHhhhC----CccccccCCCCCChhhHHHHcC-hHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHH
Confidence            999999999999    9999999999999999999999 788899999999999999999999999999 8888888877


Q ss_pred             HH
Q 008102          385 RE  386 (577)
Q Consensus       385 ~~  386 (577)
                      +.
T Consensus       626 ~~  627 (1143)
T KOG4177|consen  626 KV  627 (1143)
T ss_pred             Hh
Confidence            76

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-37  Score=322.62  Aligned_cols=326  Identities=17%  Similarity=0.133  Sum_probs=238.5

Q ss_pred             HHHHHHHcCCcHHHHHhhhh---cCCc--cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHH
Q 008102            6 LLYEAAAKGEIEPFKEISNV---LGRV--VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLH   80 (577)
Q Consensus         6 ~L~~Aa~~g~~~~v~~Ll~~---~~~~--~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh   80 (577)
                      +|+.++...+.+-+...++.   ....  ..+..+.||||.|+..|+   .+++++|++    .+..++.++.+|.||||
T Consensus         3 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~---~e~vk~Ll~----~gadvn~~d~~g~TpLh   75 (477)
T PHA02878          3 KLYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARN---LDVVKSLLT----RGHNVNQPDHRDLTPLH   75 (477)
T ss_pred             hHHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCC---HHHHHHHHH----CCCCCCCCCCCCCCHHH
Confidence            47777777776555555543   1111  122356788999999999   999988877    56778888888999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102           81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET  160 (577)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  160 (577)
                      +||..|+.++++.|++.+...                  ....+.+|++.|+..++.++++.|+..+.......+   ..
T Consensus        76 ~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~  134 (477)
T PHA02878         76 IICKEPNKLGMKEMIRSINKC------------------SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LV  134 (477)
T ss_pred             HHHHCccHhHHHHHHHHHhcc------------------ccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HH
Confidence            999999999999888875431                  114567889999999999999988876433221111   11


Q ss_pred             HHHHHHHh--CCHHHHHHHHHhCCCCCCCCCC-CCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcC
Q 008102          161 PLYMAAER--GFEKMLTEILENCPSVAHEGPS-GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD  237 (577)
Q Consensus       161 pL~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  237 (577)
                      .+......  .+.+++++|+++|++++..+.. |.||||+|+.. ++.+++++|++.+.+ ++..|..|.||||.|+..|
T Consensus       135 ~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~  212 (477)
T PHA02878        135 YIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHY  212 (477)
T ss_pred             HHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhC
Confidence            11111111  2345888899999888888888 88999999888 889999999888877 6788888889999999888


Q ss_pred             cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc-CcHHHHHHHHhhCCcccccccC-CCCchhhHHHhcCChhHHHHHH
Q 008102          238 RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ-GKLRVVEEIISYCPECCELVDG-RGWNVLHFAMVSFDASDLKHLL  315 (577)
Q Consensus       238 ~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll  315 (577)
                      +.+++++|++.|++++  ..+..|.||||+|+.. ++.++++.|+++|++ ++.++. .|+||||+|  .++.+++++|+
T Consensus       213 ~~~iv~~Ll~~ga~in--~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll  287 (477)
T PHA02878        213 NKPIVHILLENGASTD--ARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLL  287 (477)
T ss_pred             CHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHH
Confidence            8899999998888875  3344788899988865 688888888888888 555554 788899988  46678888888


Q ss_pred             hccccccccccCCCCCCCcHHHHHHHhCCccceeccccC-----cccchhhhhhCCCChH
Q 008102          316 NNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN-----VGGDYQAVNKQNISVK  370 (577)
Q Consensus       316 ~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~-----~g~d~~~~n~~G~t~l  370 (577)
                      ++    |+++|.+|.+|+||||+|+..+....+.++|+.     .+.+++.+|..|.++-
T Consensus       288 ~~----gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n  343 (477)
T PHA02878        288 EY----GADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDN  343 (477)
T ss_pred             HC----CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHH
Confidence            88    888888888899999988876533333444433     3456666666666553

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-37  Score=326.24  Aligned_cols=293  Identities=19%  Similarity=0.159  Sum_probs=241.2

Q ss_pred             HhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHH
Q 008102           61 LEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVV  140 (577)
Q Consensus        61 ~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v  140 (577)
                      +...+...+..+..+.||||.|++.|+.++|++|++.|++                ++.+|.+|.||||+|+..|+.+++
T Consensus        23 ~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad----------------vn~~d~~g~TpLh~A~~~g~~~~v   86 (477)
T PHA02878         23 IDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN----------------VNQPDHRDLTPLHIICKEPNKLGM   86 (477)
T ss_pred             HhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHCccHhHH
Confidence            4445555566677899999999999999999999998766                467899999999999999999999


Q ss_pred             HHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-CCCHHHHHHHHhhCCCcc
Q 008102          141 KILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN-INSIDVVKLLLDKKKSLI  219 (577)
Q Consensus       141 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~~~~~  219 (577)
                      +.|++.+.....   ..+.+|++.|+..|+.++++.|+..+.+.....  ....+...... ....+++++|++.+.+ +
T Consensus        87 ~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gad-i  160 (477)
T PHA02878         87 KEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGAD-I  160 (477)
T ss_pred             HHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCC-C
Confidence            999998655432   567899999999999999999998864422111  00111111111 0234699999999998 6


Q ss_pred             ccCCCC-CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCch
Q 008102          220 GETDRY-GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV  298 (577)
Q Consensus       220 ~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  298 (577)
                      +..+.. |.||||+|+..|+.+++++|++.|++++  ..+..|.||||.|+..|+.++++.|++.+++ ++.+|..|+||
T Consensus       161 n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n--~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~Tp  237 (477)
T PHA02878        161 NMKDRHKGNTALHYATENKDQRLTELLLSYGANVN--IPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTP  237 (477)
T ss_pred             CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence            888888 9999999999999999999999999875  3345899999999999999999999999998 78899999999


Q ss_pred             hhHHHhc-CChhHHHHHHhccccccccccCCCC-CCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHhc-
Q 008102          299 LHFAMVS-FDASDLKHLLNNYPIVRNLINDKDK-EGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRY-  375 (577)
Q Consensus       299 Lh~A~~~-~~~~~v~~Ll~~~~~~~~~~n~~d~-~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~~-  375 (577)
                      ||+|+.. ++.+++++|+++    |+++|.++. .|+||||+|+  + ...+.++|+++|+|+|.+|..|.||+++|.. 
T Consensus       238 Lh~A~~~~~~~~iv~~Ll~~----gadvn~~~~~~g~TpLh~A~--~-~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        238 LHISVGYCKDYDILKLLLEH----GVDVNAKSYILGLTALHSSI--K-SERKLKLLLEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             HHHHHHhcCCHHHHHHHHHc----CCCCCccCCCCCCCHHHHHc--c-CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHH
Confidence            9999976 689999999998    999999986 8999999994  3 4567889999999999999999999999983 


Q ss_pred             -CCcchHHHHH
Q 008102          376 -GFPQLEQEIR  385 (577)
Q Consensus       376 -~~~~~~~~l~  385 (577)
                       ...++.+.+.
T Consensus       311 ~~~~~~~~~li  321 (477)
T PHA02878        311 YLCINIGRILI  321 (477)
T ss_pred             cCccchHHHHH
Confidence             2334444443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.4e-37  Score=322.76  Aligned_cols=284  Identities=23%  Similarity=0.245  Sum_probs=255.3

Q ss_pred             cCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH-----HHHhC
Q 008102           13 KGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV-----AAKCG   86 (577)
Q Consensus        13 ~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~-----A~~~g   86 (577)
                      ....+.++++++.+-.. ..+..+.||||.|+..|+   .++++.|++    .|..++..+..|.||||+     |+..|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~---~~ivk~Ll~----~g~~~~~~~~~~~t~L~~~~~~~a~~~~   84 (480)
T PHA03100         12 IIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARN---IDVVKILLD----NGADINSSTKNNSTPLHYLSNIKYNLTD   84 (480)
T ss_pred             HHHHHHHHHHHhcCccchhhhcccchhhhhhhccCC---HHHHHHHHH----cCCCCCCccccCcCHHHHHHHHHHHhhc
Confidence            34556788888654322 445588999999999999   999999987    577788889999999999     99999


Q ss_pred             CHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH--HcCCHHHHHHHHhcCCCCCcCCCCCCChHHHH
Q 008102           87 HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM--QHRSLDVVKILIKEDPAVPYSTNGCGETPLYM  164 (577)
Q Consensus        87 ~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  164 (577)
                      +.++++.|++.|++                ++..|..|.||||+|+  ..|+.+++++|+++|+++. ..+..|.||||+
T Consensus        85 ~~~iv~~Ll~~ga~----------------i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~  147 (480)
T PHA03100         85 VKEIVKLLLEYGAN----------------VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLHL  147 (480)
T ss_pred             hHHHHHHHHHCCCC----------------CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHHH
Confidence            99999999998876                3568899999999999  9999999999999998875 678889999999


Q ss_pred             HHHhC--CHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCC------CcHHHHHHhc
Q 008102          165 AAERG--FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYG------WTPLHYASYF  236 (577)
Q Consensus       165 A~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g------~tpL~~A~~~  236 (577)
                      |+..|  +.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..+..|      .||||.|+..
T Consensus       148 A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~-~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~  225 (480)
T PHA03100        148 YLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEK-GNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACY  225 (480)
T ss_pred             HHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHh-CCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHh
Confidence            99999  99999999999999999999999999999999 999999999999988 67777778      8999999999


Q ss_pred             Cc--HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHH
Q 008102          237 DR--NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL  314 (577)
Q Consensus       237 g~--~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  314 (577)
                      |+  .+++++|++.|.+++  ..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||+|+|+.+++.+++++|
T Consensus       226 ~~~~~~iv~~Ll~~g~din--~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~L  302 (480)
T PHA03100        226 NEITLEVVNYLLSYGVPIN--IKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLL  302 (480)
T ss_pred             CcCcHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHHH
Confidence            99  999999999998875  3345899999999999999999999999997 889999999999999999999999999


Q ss_pred             HhccccccccccCCC
Q 008102          315 LNNYPIVRNLINDKD  329 (577)
Q Consensus       315 l~~~~~~~~~~n~~d  329 (577)
                      +++    |++++..+
T Consensus       303 l~~----g~~i~~i~  313 (480)
T PHA03100        303 LNN----GPSIKTII  313 (480)
T ss_pred             Hhc----CCCHHHHH
Confidence            998    66665543

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=322.18  Aligned_cols=343  Identities=16%  Similarity=0.113  Sum_probs=260.5

Q ss_pred             cHHHHHhhhhcCCc-cccCCCCccceeeeec---CCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHH-
Q 008102           16 IEPFKEISNVLGRV-VTHNNKNTILHVNIIS---RDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASV-   90 (577)
Q Consensus        16 ~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~i-   90 (577)
                      ++.++.|+..+... ..+++|+||||+|+..   |+   .++++.|++    .+..++.++..|.||||.|+..|+.++ 
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~---~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~   84 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNN---VEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVN   84 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCc---HHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHH
Confidence            46778888765554 5577999999997555   77   999999987    678888999999999999999999665 


Q ss_pred             ---HHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHH-
Q 008102           91 ---VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAA-  166 (577)
Q Consensus        91 ---v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~-  166 (577)
                         ++.|++.+...                +..+  ..+++|.|+.+|+.+++++|+++|.+++ ..|..|.||||.++ 
T Consensus        85 ~~~~~~Ll~~~~~~----------------n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin-~~d~~g~T~L~~~~a  145 (661)
T PHA02917         85 KDIAMALLEATGYS----------------NIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLS-VKCENHRSVIENYVM  145 (661)
T ss_pred             HHHHHHHHhccCCC----------------CCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCC-ccCCCCccHHHHHHH
Confidence               45666543211                1111  2377888999999999999999999987 77888999999654 


Q ss_pred             -HhCCHHHHHHHHHhCCCCCCCCC---CC-----------CCHHHHHHHc----------CCCHHHHHHHHhhCCCcccc
Q 008102          167 -ERGFEKMLTEILENCPSVAHEGP---SG-----------KTALHAAAVN----------INSIDVVKLLLDKKKSLIGE  221 (577)
Q Consensus       167 -~~g~~~~v~~Ll~~~~~~~~~~~---~g-----------~t~L~~A~~~----------~~~~~~~~~Ll~~~~~~~~~  221 (577)
                       ..|+.+++++|+++|++++..|.   .|           .||||+|+..          +++.+++++|++.|.+ ++.
T Consensus       146 ~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~  224 (661)
T PHA02917        146 TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSS  224 (661)
T ss_pred             ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-ccc
Confidence             57899999999999999976543   23           5999999862          2589999999999998 799


Q ss_pred             CCCCCCcHHHHHHhcCcH--HHHHHHhcCCCCccch--hcCCCCCcchhHhhh-------c--CcHHHHHHHHhhCCccc
Q 008102          222 TDRYGWTPLHYASYFDRN--IIAELLLNSDKSLAYI--VDNDRKMTALHLAAG-------Q--GKLRVVEEIISYCPECC  288 (577)
Q Consensus       222 ~d~~g~tpL~~A~~~g~~--~~v~~Ll~~~~~~~~~--~~~~~g~tpL~~A~~-------~--g~~~iv~~Ll~~~~~~~  288 (577)
                      +|.+|.||||+|+..|+.  +++++|++ |.+....  ..+..+.+|+|+|+.       +  .+.++++.|++.|.+..
T Consensus       225 ~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~  303 (661)
T PHA02917        225 IDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHG  303 (661)
T ss_pred             CCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCc
Confidence            999999999999999985  79999986 6654321  123367788888883       2  27899999999997521


Q ss_pred             ------ccc------------cCCCCchhhHHH---hcCC--hhHHHHHHhcccc-------------------------
Q 008102          289 ------ELV------------DGRGWNVLHFAM---VSFD--ASDLKHLLNNYPI-------------------------  320 (577)
Q Consensus       289 ------~~~------------d~~g~t~Lh~A~---~~~~--~~~v~~Ll~~~~~-------------------------  320 (577)
                            +..            +..+.+++|.+.   ..|.  .+++++|++.+..                         
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~  383 (661)
T PHA02917        304 IMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLK  383 (661)
T ss_pred             eeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHH
Confidence                  111            122344545433   3565  4488888877331                         


Q ss_pred             -ccccccCCCCCCCcHHHHHHHhCC----------------------ccceeccccCcccchhhhhhCCCChHHHHh-cC
Q 008102          321 -VRNLINDKDKEGNTPLHLLAALCR----------------------DSFHRIVPWNVGGDYQAVNKQNISVKHITR-YG  376 (577)
Q Consensus       321 -~~~~~n~~d~~G~TpLh~A~~~~~----------------------~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~  376 (577)
                       .|++++.+|.+|+||||.|++.++                      ...+..+|+.+|+|+|.+|..|.|||++|. .+
T Consensus       384 ~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~  463 (661)
T PHA02917        384 KEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYN  463 (661)
T ss_pred             hcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcC
Confidence             245556667789999999985432                      112348899999999999999999999998 77


Q ss_pred             CcchHHHHHH
Q 008102          377 FPQLEQEIRE  386 (577)
Q Consensus       377 ~~~~~~~l~~  386 (577)
                      +.++++.|.+
T Consensus       464 ~~~~v~~Ll~  473 (661)
T PHA02917        464 KQSLVSLLLE  473 (661)
T ss_pred             CHHHHHHHHH
Confidence            7778888777

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-36  Score=285.83  Aligned_cols=218  Identities=26%  Similarity=0.325  Sum_probs=191.0

Q ss_pred             HHHHHcCCcHHHHHhhhhcCC-----c-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccc-----cccccCCCC
Q 008102            8 YEAAAKGEIEPFKEISNVLGR-----V-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSL-----LQSVNAKGD   76 (577)
Q Consensus         8 ~~Aa~~g~~~~v~~Ll~~~~~-----~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~-----~~~~~~~g~   76 (577)
                      +.|++.|.+..+..|+....+     . -...+|.|||-+|+.+||   .+++++|++.+...+..     .+-.+.+|-
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH---~~vVeyLle~~~a~~e~~GsV~FDge~Iega   85 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGH---ADVVEYLLEHCRASPEQGGSVRFDGETIEGA   85 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCc---HHHHHHHHHHhcCCccCCceEEeCCcccCCC
Confidence            489999999999999874321     1 333478999999999999   99999998876555433     234566788


Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      +||..|+..||.++|+.|+++|+.                +|.......|||-.||..|+.+++++|+++++++. +.|.
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~----------------VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-Ianr  148 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGAS----------------VNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANR  148 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCc----------------cccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-cccc
Confidence            999999999999999999999876                34455566799999999999999999999999886 8999


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.|.|++|+.+|+.+++++|++.|+|++.++..|.|+||.++.. |+.|+++.|+.++..  -..|..|.|||..|+..
T Consensus       149 hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEs-G~vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~t  225 (615)
T KOG0508|consen  149 HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAES-GSVDIVQLLLKHGAK--IDVDGHGMTPLLLAAVT  225 (615)
T ss_pred             CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhc-ccHHHHHHHHhCCce--eeecCCCCchHHHHhhh
Confidence            999999999999999999999999999999999999999999999 999999999999986  45677799999999999


Q ss_pred             CcHHHHHHHhcC
Q 008102          237 DRNIIAELLLNS  248 (577)
Q Consensus       237 g~~~~v~~Ll~~  248 (577)
                      |+.+++++|++.
T Consensus       226 G~~~iVe~L~~~  237 (615)
T KOG0508|consen  226 GHTDIVERLLQC  237 (615)
T ss_pred             cchHHHHHHhcC
Confidence            999999999953

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=8.2e-38  Score=335.24  Aligned_cols=365  Identities=24%  Similarity=0.270  Sum_probs=315.7

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA   82 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A   82 (577)
                      .++++.|+..+.++.++.++..+.++ ..+..|-+|||.|+..|+   .+++..++.    .+...+..+..|.||+|.|
T Consensus       210 ~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~---~~i~~~l~~----~ga~~~~~~vr~~tplh~A  282 (1143)
T KOG4177|consen  210 FTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGH---LDIVKLLLQ----HGASVNVSTVRGETPLHMA  282 (1143)
T ss_pred             CCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccc---hhHHHHHHh----cccccCcccccccCcchhh
Confidence            46899999999999999999999998 666699999999999999   999999987    5778889999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHcCCch---------hhccccc--------hHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102           83 AKCGHASVVTALIEIAKKQPKE---------LESGVES--------TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK  145 (577)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~---------~~~~~~~--------~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  145 (577)
                      |+.+..+++++|++.|++....         +....+.        ......+..+..|.||||++++.++.++...+..
T Consensus       283 A~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~  362 (1143)
T KOG4177|consen  283 ARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLE  362 (1143)
T ss_pred             hccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhc
Confidence            9999999999999998765321         0000000        0112245667788899999999998887777777


Q ss_pred             cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102          146 EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       146 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      .++... ...+.|.||+|.|+.+|..+.++.+++.|++++..+..|.||||.|+.. ++..+++.+++.+.+ .+..+..
T Consensus       363 ~~~~~~-~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~-~~~~~v~l~l~~gA~-~~~~~~l  439 (1143)
T KOG4177|consen  363 HGAQRR-QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHY-GNPRVVKLLLKRGAS-PNAKAKL  439 (1143)
T ss_pred             cccccC-cccccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhc-cCcceEEEEeccCCC-hhhHhhc
Confidence            766554 6677799999999999999999999999999999999999999999999 999999999998888 7888999


Q ss_pred             CCcHHHHHHhcC-cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHh
Q 008102          226 GWTPLHYASYFD-RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV  304 (577)
Q Consensus       226 g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (577)
                      |.||+|+|+..| ..++...+++.+.+++....  .|.||||.|+..|+.++++.+++.++. .+.....|-+++|.|..
T Consensus       440 G~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~--~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  440 GYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK--QGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             CCChhhhhhhcccHhhhhhhHhhcCCCcchhcc--ccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhh
Confidence            999999999999 78888889998888864433  699999999999999999999998855 56677889999999999


Q ss_pred             cCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHH
Q 008102          305 SFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQE  383 (577)
Q Consensus       305 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~  383 (577)
                      .+...+++.++++    |++++.++..|+||||.|+..| ...++++|+++|+|++++++.|+||||.|+ .|+.+++..
T Consensus       517 ~~~v~~~~~l~~~----ga~v~~~~~r~~TpLh~A~~~g-~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  517 EDTVKVAKILLEH----GANVDLRTGRGYTPLHVAVHYG-NVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhHHHHHHHhhc----CCceehhcccccchHHHHHhcC-CchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHH
Confidence            9999999999998    9999999999999999999999 678889999999999999999999999999 888888888


Q ss_pred             HHH
Q 008102          384 IRE  386 (577)
Q Consensus       384 l~~  386 (577)
                      |.+
T Consensus       592 Llk  594 (1143)
T KOG4177|consen  592 LLK  594 (1143)
T ss_pred             HHH
Confidence            887

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.3e-35  Score=280.22  Aligned_cols=220  Identities=18%  Similarity=0.162  Sum_probs=174.8

Q ss_pred             hCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHH
Q 008102           85 CGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM  164 (577)
Q Consensus        85 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  164 (577)
                      +++.+++++|++.++                  +.+|.+|.||||+|+..|+.++++.|++.+++.+. .  +|.||||+
T Consensus         9 ~~~~~~~~~Lis~~a------------------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpLh~   67 (284)
T PHA02791          9 WKSKQLKSFLSSKDA------------------FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQ   67 (284)
T ss_pred             cCHHHHHHHHHhCCC------------------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHHHH
Confidence            467788888888643                  23688889999999999999999999988876643 2  36789999


Q ss_pred             HHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCC-cHHHHHHhcCcHHHHH
Q 008102          165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW-TPLHYASYFDRNIIAE  243 (577)
Q Consensus       165 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~-tpL~~A~~~g~~~~v~  243 (577)
                      |+..|+.+++++|++.|++++.++..|.||||+|+.. ++.++++.|++.+.+ ++..+..|+ ||||+|+..|+.++++
T Consensus        68 Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gad-in~~~~~g~~TpL~~Aa~~g~~eivk  145 (284)
T PHA02791         68 AATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVS  145 (284)
T ss_pred             HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC-cCccCCCCCcHHHHHHHHcCCHHHHH
Confidence            9999999999999988888888888888999998888 888888888888877 466666664 7888888888888888


Q ss_pred             HHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCch-hhHHHhcCChhHHHHHHhcccccc
Q 008102          244 LLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV-LHFAMVSFDASDLKHLLNNYPIVR  322 (577)
Q Consensus       244 ~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~  322 (577)
                      +|++++++..   +...|.||||+|+.+|+.++++.|++++++ ++.+|..|.|| ||+|+.+|+.+++++|+++    |
T Consensus       146 ~LL~~~~~~~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~----G  217 (284)
T PHA02791        146 YFLSEIPSTF---DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKY----D  217 (284)
T ss_pred             HHHhcCCccc---ccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHC----C
Confidence            8888765431   212467888888888888888888888877 66777777766 8888888888888888887    8


Q ss_pred             ccccCCCCCCCcHH
Q 008102          323 NLINDKDKEGNTPL  336 (577)
Q Consensus       323 ~~~n~~d~~G~TpL  336 (577)
                      +++|.+|.+| |||
T Consensus       218 a~in~~~~~~-~~l  230 (284)
T PHA02791        218 INIYSVNLEN-VLL  230 (284)
T ss_pred             CCCccCcccC-ccC
Confidence            8888888754 666

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.8e-34  Score=303.77  Aligned_cols=276  Identities=19%  Similarity=0.175  Sum_probs=210.5

Q ss_pred             hHHHHHHHHHHhhCccccccccCCCCcHHHHHHHh--CCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHh
Q 008102           51 IVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKC--GHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTAL  128 (577)
Q Consensus        51 ~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L  128 (577)
                      .+++++|++    .|..++.. .+|.||||.++..  ++.++|++|++.|++.                +.++ .+.|||
T Consensus        16 ~~~v~~LL~----~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv----------------n~~~-~~~tpL   73 (494)
T PHA02989         16 KNALEFLLR----TGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV----------------NYKG-YIETPL   73 (494)
T ss_pred             HHHHHHHHH----cCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc----------------cCCC-CCCCcH
Confidence            788888876    56677776 5688888765554  3688888888887763                3333 467888


Q ss_pred             HHHHHcC------CHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHh---CCHHHHHHHHHhCCCC-CCCCCCCCCHHHHH
Q 008102          129 HEAMQHR------SLDVVKILIKEDPAVPYSTNGCGETPLYMAAER---GFEKMLTEILENCPSV-AHEGPSGKTALHAA  198 (577)
Q Consensus       129 h~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A  198 (577)
                      |.|+.++      +.++++.|+++|++++ .++..|.||||.|+..   |+.+++++|+++|+++ +..+..|.||||+|
T Consensus        74 ~~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a  152 (494)
T PHA02989         74 CAVLRNREITSNKIKKIVKLLLKFGADIN-LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMY  152 (494)
T ss_pred             HHHHhccCcchhhHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHH
Confidence            8887654      4678888888888876 6677788888887655   5788888888888888 77888888888887


Q ss_pred             HHc-CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcC----cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc--
Q 008102          199 AVN-INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD----RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ--  271 (577)
Q Consensus       199 ~~~-~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g----~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~--  271 (577)
                      +.. .++.+++++|++.|.+.....+..|.||||.|+..+    +.+++++|++.|++++.  .+..+.+|+|.++..  
T Consensus       153 ~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~--~~~~~~t~l~~~~~~~~  230 (494)
T PHA02989        153 LESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET--NNNGSESVLESFLDNNK  230 (494)
T ss_pred             HHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc--cCCccccHHHHHHHhch
Confidence            654 257888888888888743336778888888887654    78888888888887752  233678888876643  


Q ss_pred             ----CcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccc
Q 008102          272 ----GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSF  347 (577)
Q Consensus       272 ----g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~  347 (577)
                          +..+++++|++ +.+ ++.+|..|+||||+|+..++.+++++|+++    |+++|.+|.+|+||||+|+..++ ..
T Consensus       231 ~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~----Gadin~~d~~G~TpL~~A~~~~~-~~  303 (494)
T PHA02989        231 ILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKL----GDDIYNVSKDGDTVLTYAIKHGN-ID  303 (494)
T ss_pred             hhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc----CCCccccCCCCCCHHHHHHHcCC-HH
Confidence                35677776665 455 788899999999999999999999999988    89999999999999999999884 44


Q ss_pred             eeccccCcccc
Q 008102          348 HRIVPWNVGGD  358 (577)
Q Consensus       348 ~~~lL~~~g~d  358 (577)
                      +.+.|++.+.+
T Consensus       304 iv~~LL~~~p~  314 (494)
T PHA02989        304 MLNRILQLKPG  314 (494)
T ss_pred             HHHHHHhcCCC
Confidence            55555555543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=277.11  Aligned_cols=230  Identities=18%  Similarity=0.156  Sum_probs=203.4

Q ss_pred             cCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       134 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      .++.+++++|+++++.   ..|..|.||||+|+..|+.+++++|++.|++++..+  +.||||.|+.. ++.++++.|++
T Consensus         9 ~~~~~~~~~Lis~~a~---~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF---KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHH
Confidence            4678999999998874   578899999999999999999999999999887654  78999999999 99999999999


Q ss_pred             hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCC-CcchhHhhhcCcHHHHHHHHhhCCccccccc
Q 008102          214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEIISYCPECCELVD  292 (577)
Q Consensus       214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d  292 (577)
                      .+.+ .+..|..|+||||+|+..|+.+++++|++.+++++. . +..| .||||+|+..|+.+++++|++++++.   .|
T Consensus        83 ~Gad-vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d  156 (284)
T PHA02791         83 SGMD-DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-Y-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FD  156 (284)
T ss_pred             CCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-c-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cc
Confidence            9887 688999999999999999999999999999998753 2 3245 69999999999999999999988763   23


Q ss_pred             -CCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcH-HHHHHHhCCccceeccccCcccchhhhhhCCCChH
Q 008102          293 -GRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTP-LHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVK  370 (577)
Q Consensus       293 -~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~Tp-Lh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l  370 (577)
                       ..|+||||+|+.+|+.+++++|+++    |+++|.+|..|.|| ||+|+..+ ...+.++|+++|+|+|++|..| ||+
T Consensus       157 ~~~g~TpLh~Aa~~g~~eiv~lLL~~----gAd~n~~d~~g~t~~L~~Aa~~~-~~e~v~lLl~~Ga~in~~~~~~-~~l  230 (284)
T PHA02791        157 LAILLSCIHITIKNGHVDMMILLLDY----MTSTNTNNSLLFIPDIKLAIDNK-DLEMLQALFKYDINIYSVNLEN-VLL  230 (284)
T ss_pred             cccCccHHHHHHHcCCHHHHHHHHHC----CCCCCcccCCCCChHHHHHHHcC-CHHHHHHHHHCCCCCccCcccC-ccC
Confidence             3589999999999999999999998    99999999999987 99999999 6778888999999999999965 777


Q ss_pred             HHHhcCCcchHHHHHH
Q 008102          371 HITRYGFPQLEQEIRE  386 (577)
Q Consensus       371 ~~a~~~~~~~~~~l~~  386 (577)
                      +.+     ++++.|.+
T Consensus       231 ~~~-----e~~~~ll~  241 (284)
T PHA02791        231 DDA-----EIAKMIIE  241 (284)
T ss_pred             CCH-----HHHHHHHH
Confidence            444     57777666

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=297.55  Aligned_cols=241  Identities=21%  Similarity=0.199  Sum_probs=222.6

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      ++++||.|++.|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+.. |
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPN-FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-G   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-C
Confidence            5789999999999999999999998876 5677899999999999999999999999999998889999999999999 9


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      +.++++.|++.+....+..+..|.||||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.++++.|+++
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999987666778889999999999999999999999999886  3345799999999999999999999999


Q ss_pred             CCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCC-cHHHHHHHhCCccceeccccCcccchhhh
Q 008102          284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGN-TPLHLLAALCRDSFHRIVPWNVGGDYQAV  362 (577)
Q Consensus       284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~-TpLh~A~~~~~~~~~~~lL~~~g~d~~~~  362 (577)
                      +++ ++.+|..|+||||+|+..|+.+++++|+++    |+++|..+.+|. ||+|+|+..+ ...+.++|+++|+|++..
T Consensus       158 g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~----ga~~n~~~~~~~~t~l~~A~~~~-~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        158 KAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDS----GANIDYFGKNGCVAALCYAIENN-KIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCcCCCCCCchHHHHHHHcC-CHHHHHHHHHCCcCcchH
Confidence            998 788999999999999999999999999998    999999998885 8999999998 677888999999999876


Q ss_pred             ---hhCCCChHHHHh
Q 008102          363 ---NKQNISVKHITR  374 (577)
Q Consensus       363 ---n~~G~t~l~~a~  374 (577)
                         +..|.||++++.
T Consensus       232 ~~~~~~~~t~l~~~~  246 (413)
T PHA02875        232 FMIEGEECTILDMIC  246 (413)
T ss_pred             hhcCCCchHHHHHHH
Confidence               678899999886

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=298.68  Aligned_cols=277  Identities=14%  Similarity=0.109  Sum_probs=236.8

Q ss_pred             HcCCcHHHHHhhhhcCCccccCCCCccceeeeec--CCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhC---
Q 008102           12 AKGEIEPFKEISNVLGRVVTHNNKNTILHVNIIS--RDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCG---   86 (577)
Q Consensus        12 ~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~--g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g---   86 (577)
                      ...+.+.++.|++.|.++-....|.|+||.++..  ++   .+++++|++    .|..++.++ .+.||||.|+.++   
T Consensus        12 ~~~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~---~~iv~~Ll~----~GAdvn~~~-~~~tpL~~a~~~~~~~   83 (494)
T PHA02989         12 DTVDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVK---IKIVKLLID----NGADVNYKG-YIETPLCAVLRNREIT   83 (494)
T ss_pred             CcCcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCC---hHHHHHHHH----cCCCccCCC-CCCCcHHHHHhccCcc
Confidence            3588999999999999883224799998765543  46   899999988    578888776 5799999998754   


Q ss_pred             ---CHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102           87 ---HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKILIKEDPAVPYSTNGCGET  160 (577)
Q Consensus        87 ---~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t  160 (577)
                         +.+++++|++.|++                ++.+|..|.||||.|+..   |+.+++++|+++|++++...+..|.|
T Consensus        84 ~~~~~~iv~~Ll~~Gad----------------in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         84 SNKIKKIVKLLLKFGAD----------------INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             hhhHHHHHHHHHHCCCC----------------CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence               57899999999887                567899999999988765   68999999999999985578899999


Q ss_pred             HHHHHHHh--CCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHHcC---CCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          161 PLYMAAER--GFEKMLTEILENCPSVAH-EGPSGKTALHAAAVNI---NSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       161 pL~~A~~~--g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~---~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      |||+|+..  ++.+++++|+++|++++. .+..|.||||.|+...   ++.+++++|++.|.+ .+..|..+.||||.++
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFL  226 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHH
Confidence            99999865  689999999999999988 6789999999998761   489999999999998 6888888999999876


Q ss_pred             hc------CcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCCh
Q 008102          235 YF------DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA  308 (577)
Q Consensus       235 ~~------g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  308 (577)
                      ..      +..+++++|+. +.+++  ..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+.+++.
T Consensus       227 ~~~~~~~~~~~~il~~l~~-~advn--~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~  302 (494)
T PHA02989        227 DNNKILSKKEFKVLNFILK-YIKIN--KKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNI  302 (494)
T ss_pred             HhchhhcccchHHHHHHHh-CCCCC--CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCH
Confidence            54      34677777765 46664  3345899999999999999999999999999 789999999999999999999


Q ss_pred             hHHHHHHhc
Q 008102          309 SDLKHLLNN  317 (577)
Q Consensus       309 ~~v~~Ll~~  317 (577)
                      ++++.|+++
T Consensus       303 ~iv~~LL~~  311 (494)
T PHA02989        303 DMLNRILQL  311 (494)
T ss_pred             HHHHHHHhc
Confidence            999999987

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=291.31  Aligned_cols=240  Identities=19%  Similarity=0.239  Sum_probs=136.8

Q ss_pred             CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102           36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ  115 (577)
Q Consensus        36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  115 (577)
                      +++||.|+..|+   .++++.|++    .+..++..+..|.||||+|+..|+.+++++|++.|+.+              
T Consensus         3 ~~~L~~A~~~g~---~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~--------------   61 (413)
T PHA02875          3 QVALCDAILFGE---LDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP--------------   61 (413)
T ss_pred             chHHHHHHHhCC---HHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc--------------
Confidence            455666666666   666666654    34445555555666666666666666666666655431              


Q ss_pred             hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102          116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL  195 (577)
Q Consensus       116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  195 (577)
                        +..+.++.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        62 --~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpL  139 (413)
T PHA02875         62 --DVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPL  139 (413)
T ss_pred             --cccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHH
Confidence              223445566666666666666666666665555444455566666666666666666666666666666666666666


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH
Q 008102          196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR  275 (577)
Q Consensus       196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  275 (577)
                      |.|+.. ++.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|++++..... .+.||+|+|+..|+.+
T Consensus       140 h~A~~~-~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~-~~~t~l~~A~~~~~~~  216 (413)
T PHA02875        140 HLAVMM-GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN-GCVAALCYAIENNKID  216 (413)
T ss_pred             HHHHHc-CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCC-CCchHHHHHHHcCCHH
Confidence            666666 666666666665554 4555566666666666666666666666666555432211 2345555555555555


Q ss_pred             HHHHHHhhCCccccc---ccCCCCchhhHH
Q 008102          276 VVEEIISYCPECCEL---VDGRGWNVLHFA  302 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~---~d~~g~t~Lh~A  302 (577)
                      ++++|+++|++ ++.   .+..+.|+++.+
T Consensus       217 iv~~Ll~~gad-~n~~~~~~~~~~t~l~~~  245 (413)
T PHA02875        217 IVRLFIKRGAD-CNIMFMIEGEECTILDMI  245 (413)
T ss_pred             HHHHHHHCCcC-cchHhhcCCCchHHHHHH
Confidence            55555555555 222   234455555544

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-34  Score=236.97  Aligned_cols=209  Identities=22%  Similarity=0.249  Sum_probs=174.5

Q ss_pred             CCCCHHHHHHHHcCCcHHHHHhhhhcCCc---cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCc
Q 008102            1 MVMDPLLYEAAAKGEIEPFKEISNVLGRV---VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDA   77 (577)
Q Consensus         1 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~---~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t   77 (577)
                      |......+.++.......++.+++..++.   .++++|+||||+||..|+   .+++.+|+.   ..+..++.+|..|+|
T Consensus         1 Me~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~---~eiv~fLls---q~nv~~ddkDdaGWt   74 (226)
T KOG4412|consen    1 MEYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGH---VEIVYFLLS---QPNVKPDDKDDAGWT   74 (226)
T ss_pred             CCccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCc---hhHHHHHHh---cCCCCCCCccccCCc
Confidence            44556677777777777888888876632   667789999999999999   999999864   355667788899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHH-HHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           78 PLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      |||+||..|+.++|+.|+.+ +++                ++..+..|.|+||+|+..|..+++++|+++|+.+ ..+|.
T Consensus        75 Plhia~s~g~~evVk~Ll~r~~ad----------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~  137 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNRSGAD----------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDK  137 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcCCCCC----------------cceecCCCcceehhhhcCChhhHHHHHHhcCCCC-ccccc
Confidence            99999999999999999987 433                5778889999999999999999999999988665 48899


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      .|+||||.|+..|..+++++|+..|+.+|..|+.|+||||.|... ++.+....|++.+.+ ....|+.| ||+..++-
T Consensus       138 ~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e-~~~d~a~lLV~~gAd-~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  138 QGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE-GHPDVAVLLVRAGAD-TDREDKEG-TALRIACN  213 (226)
T ss_pred             ccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhc-cCchHHHHHHHhccc-eeeccccC-chHHHHHH
Confidence            999999999999999999999999999999999999999999777 889999999998877 67778877 88877654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=293.80  Aligned_cols=296  Identities=20%  Similarity=0.226  Sum_probs=235.8

Q ss_pred             ceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHH--hCCHHHHHHHHHHHHcCCchhhccccchHHHh
Q 008102           39 LHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAK--CGHASVVTALIEIAKKQPKELESGVESTARQM  116 (577)
Q Consensus        39 Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  116 (577)
                      ||--+...+....+.++.|++.    .. .+.. ..+.|+++.+..  .++.++|++|++.|++                
T Consensus         6 l~~y~~~~~~~~~~~v~~ll~~----~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad----------------   63 (489)
T PHA02798          6 LYNYITFSDNVKLSTVKLLIKS----CN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN----------------   63 (489)
T ss_pred             hHHHeeecCcccHHHHHHHHhc----CC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC----------------
Confidence            3333344444447888888752    21 2222 346677764444  3478999999998877                


Q ss_pred             hccCCCCCCcHhHHHHHc-----CCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhC---CHHHHHHHHHhCCCCCCCC
Q 008102          117 LGMTNDEKNTALHEAMQH-----RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG---FEKMLTEILENCPSVAHEG  188 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~~~  188 (577)
                      ++.+|..|.||||.|+.+     ++.++++.|+++|++++ .+|..|.||||+|+..+   +.+++++|+++|++++..|
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d  142 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLD  142 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccC
Confidence            466889999999998864     67899999999999876 67888999999999875   7899999999999999999


Q ss_pred             CCCCCHHHHHHHcCCC---HHHHHHHHhhCCCccccC-CCCCCcHHHHHHhc----CcHHHHHHHhcCCCCccchhcCCC
Q 008102          189 PSGKTALHAAAVNINS---IDVVKLLLDKKKSLIGET-DRYGWTPLHYASYF----DRNIIAELLLNSDKSLAYIVDNDR  260 (577)
Q Consensus       189 ~~g~t~L~~A~~~~~~---~~~~~~Ll~~~~~~~~~~-d~~g~tpL~~A~~~----g~~~~v~~Ll~~~~~~~~~~~~~~  260 (577)
                      ..|.||||.|+.. ++   .+++++|++.+.+ ++.. +..|.||||.++..    ++.+++++|+++|+++..  .+..
T Consensus       143 ~~g~tpL~~a~~~-~~~~~~~vv~~Ll~~gad-in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~--~~~~  218 (489)
T PHA02798        143 KDGFTMLQVYLQS-NHHIDIEIIKLLLEKGVD-INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK--ENKS  218 (489)
T ss_pred             CCCCcHHHHHHHc-CCcchHHHHHHHHHhCCC-cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc--CCcc
Confidence            9999999999998 66   8999999999888 4444 56789999988764    478999999999988753  2335


Q ss_pred             CCcchh-------HhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCC
Q 008102          261 KMTALH-------LAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGN  333 (577)
Q Consensus       261 g~tpL~-------~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~  333 (577)
                      +.++++       .+...++.+++++|+. +.+ ++.+|..|+||||+|+.+++.+++++|+++    |+++|.+|..|+
T Consensus       219 ~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~----GAdin~~d~~G~  292 (489)
T PHA02798        219 HKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQL----GGDINIITELGN  292 (489)
T ss_pred             ccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHc----CCcccccCCCCC
Confidence            667765       2455677888888766 466 889999999999999999999999999998    999999999999


Q ss_pred             cHHHHHHHhCCccceeccccCcccchhhhhhCCCC
Q 008102          334 TPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNIS  368 (577)
Q Consensus       334 TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t  368 (577)
                      ||||+|+..+ ...+...|+++|++++..+..+..
T Consensus       293 TpL~~A~~~~-~~~iv~~lL~~~~~~~~i~~~~~~  326 (489)
T PHA02798        293 TCLFTAFENE-SKFIFNSILNKKPNKNTISYTYYK  326 (489)
T ss_pred             cHHHHHHHcC-cHHHHHHHHccCCCHHHHHHHHHH
Confidence            9999999998 566777788999999977665543

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.1e-33  Score=284.30  Aligned_cols=341  Identities=15%  Similarity=0.083  Sum_probs=266.1

Q ss_pred             CCCCHHHHHHHHcCCcHH--HHHhhhhcCCccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcH
Q 008102            1 MVMDPLLYEAAAKGEIEP--FKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAP   78 (577)
Q Consensus         1 ~~~~~~L~~Aa~~g~~~~--v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~   78 (577)
                      |.-|.-|+-.++.=+.+.  -+.|++.|.+.....++.||||.-..+.+.  ..-++.++.+    +...+..|.+|.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~n~~~~~~   74 (631)
T PHA02792          1 MVNDKILYDSCKTFNIDACSAQSLIESGANPLYEYDGETPLKAYVTKKNN--NIKNDVVILL----LSSVDYKNINDFDI   74 (631)
T ss_pred             CCchhHHHhHhhccchhHHHHHHHHHcCCCcccccCCCccHHHHHhhhhh--hHHHHHHHHH----HhCCCcCccCCccH
Confidence            455777888888876664  577889999985566888999987666551  1223344442    23345788899999


Q ss_pred             HHH-HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHH-cCCHHHHHHHHhcCCCCC-----
Q 008102           79 LHV-AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ-HRSLDVVKILIKEDPAVP-----  151 (577)
Q Consensus        79 Lh~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~~~~~~-----  151 (577)
                      +|+ |..+|+.|+|++|+++|++                ++.++..|.||+|+|+. .++.|++++|+++|++..     
T Consensus        75 ~~~~~s~n~~lElvk~LI~~GAd----------------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~  138 (631)
T PHA02792         75 FEYLCSDNIDIELLKLLISKGLE----------------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQY  138 (631)
T ss_pred             HHHHHHhcccHHHHHHHHHcCCC----------------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccccc
Confidence            985 6668999999999999887                45678889999999966 699999999999987521     


Q ss_pred             ------------------------------cCCCCCCChHHHHHHHhC-------CHHHHHHHHHhCCCCCCCCCCCCCH
Q 008102          152 ------------------------------YSTNGCGETPLYMAAERG-------FEKMLTEILENCPSVAHEGPSGKTA  194 (577)
Q Consensus       152 ------------------------------~~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~g~t~  194 (577)
                                                    ...+..|.||||+|+..+       +.++++.|+++|++++..|..|.||
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~  218 (631)
T PHA02792        139 GYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTT  218 (631)
T ss_pred             CcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChH
Confidence                                          134556999999999999       8999999999999999999999999


Q ss_pred             HHHHHHcCC--CHHHHHHHHhhCCCcc------------c------cCCC-------CCCc-------------------
Q 008102          195 LHAAAVNIN--SIDVVKLLLDKKKSLI------------G------ETDR-------YGWT-------------------  228 (577)
Q Consensus       195 L~~A~~~~~--~~~~~~~Ll~~~~~~~------------~------~~d~-------~g~t-------------------  228 (577)
                      ||+|+.+ .  +.|+++.|+...-...            .      ..|.       .|.+                   
T Consensus       219 l~~~~~~-~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~  297 (631)
T PHA02792        219 LYYYVDK-CDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISS  297 (631)
T ss_pred             HHHHHHc-ccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHH
Confidence            9999999 7  7889998887422100            0      0110       0111                   


Q ss_pred             -----------HHHHHHhcC--cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCC
Q 008102          229 -----------PLHYASYFD--RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRG  295 (577)
Q Consensus       229 -----------pL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  295 (577)
                                 .||.-...+  +.+++++|++.|.+..    ......+++.|+..|+.+++++|+++|++ ++.+|..|
T Consensus       298 ~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g  372 (631)
T PHA02792        298 ILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNI  372 (631)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCC
Confidence                       123333333  5788999999998763    12356679999999999999999999999 67777764


Q ss_pred             --CchhhHHHhcCChh---HHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChH
Q 008102          296 --WNVLHFAMVSFDAS---DLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVK  370 (577)
Q Consensus       296 --~t~Lh~A~~~~~~~---~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l  370 (577)
                        .||||+|......+   ++++++++    |+++|.+|..|.||||+|+..+ ...+.++|+++|+|++.+|..|.||+
T Consensus       373 ~~~TpLh~A~~n~~~~v~~IlklLIs~----GADIN~kD~~G~TPLh~Aa~~~-n~eivelLLs~GADIN~kD~~G~TpL  447 (631)
T PHA02792        373 INIMPLFPTLSIHESDVLSILKLCKPY----IDDINKIDKHGRSILYYCIESH-SVSLVEWLIDNGADINITTKYGSTCI  447 (631)
T ss_pred             CChhHHHHHHHhccHhHHHHHHHHHhc----CCccccccccCcchHHHHHHcC-CHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence              69999988776654   57888888    9999999999999999999988 56778899999999999999999999


Q ss_pred             HHHh
Q 008102          371 HITR  374 (577)
Q Consensus       371 ~~a~  374 (577)
                      ++|.
T Consensus       448 ~~A~  451 (631)
T PHA02792        448 GICV  451 (631)
T ss_pred             HHHH
Confidence            9986

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-33  Score=235.10  Aligned_cols=176  Identities=26%  Similarity=0.359  Sum_probs=116.0

Q ss_pred             CCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHh
Q 008102          190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLA  268 (577)
Q Consensus       190 ~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A  268 (577)
                      +|+||||+||.. |+.+++.+|+......++..|..||||||.|+..|+.++++.|+.+ +++++  ..+..|.|+||+|
T Consensus        37 D~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advn--a~tn~G~T~LHyA  113 (226)
T KOG4412|consen   37 DGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVN--ATTNGGQTCLHYA  113 (226)
T ss_pred             cCCceeeeeeec-CchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcc--eecCCCcceehhh
Confidence            444444444444 4445554444333223444555566666666666666666666655 44443  2223566666666


Q ss_pred             hhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccce
Q 008102          269 AGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFH  348 (577)
Q Consensus       269 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~  348 (577)
                      +.+|..++.++|+++++. +..+|..|.||||-|+..|+.+++++|+..    ++-+|.+|+.|+||||+|...+ ...+
T Consensus       114 agK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvie~Li~~----~a~~n~qDk~G~TpL~~al~e~-~~d~  187 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ----GAPLNTQDKYGFTPLHHALAEG-HPDV  187 (226)
T ss_pred             hcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhHHHHHhc----CCCCCcccccCccHHHHHHhcc-CchH
Confidence            666666666666666644 667777788888888888888888888877    7778888888888888885555 5667


Q ss_pred             eccccCcccchhhhhhCCCChHHHHhc
Q 008102          349 RIVPWNVGGDYQAVNKQNISVKHITRY  375 (577)
Q Consensus       349 ~~lL~~~g~d~~~~n~~G~t~l~~a~~  375 (577)
                      ..+|+++|+|++..|++| ||+.++..
T Consensus       188 a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  188 AVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHHHHHhccceeeccccC-chHHHHHH
Confidence            778888888888888888 88777763

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=7e-32  Score=283.69  Aligned_cols=294  Identities=14%  Similarity=0.143  Sum_probs=240.0

Q ss_pred             CCCCHHHHHHHHcC--CcHHHHHhhhhcCCccccCCCCcccee--eeecCCccchHHHHHHHHHHhhCccccccccCCCC
Q 008102            1 MVMDPLLYEAAAKG--EIEPFKEISNVLGRVVTHNNKNTILHV--NIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGD   76 (577)
Q Consensus         1 ~~~~~~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~g~t~Lh~--A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~   76 (577)
                      |.|+.---+.....  +.+.|+.|++.+ +......+.|+++.  +...++   .+++++|++    .|..++.++..|.
T Consensus         1 ~~~~~l~~y~~~~~~~~~~~v~~ll~~~-~~~~~~~~~~~~~~yl~~~~~~---~~iv~~Ll~----~Gadvn~~d~~g~   72 (489)
T PHA02798          1 MDIDNLYNYITFSDNVKLSTVKLLIKSC-NPNEIVNEYSIFQKYLQRDSPS---TDIVKLFIN----LGANVNGLDNEYS   72 (489)
T ss_pred             CchhhhHHHeeecCcccHHHHHHHHhcC-ChhhhcccchHHHHHHhCCCCC---HHHHHHHHH----CCCCCCCCCCCCC
Confidence            45555333433333  345899999753 33222356776653  333456   899999988    6889999999999


Q ss_pred             cHHHHHHHh-----CCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcC---CHHHHHHHHhcCC
Q 008102           77 APLHVAAKC-----GHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHR---SLDVVKILIKEDP  148 (577)
Q Consensus        77 t~Lh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~  148 (577)
                      ||||.|+.+     ++.+++++|++.|++                ++.+|.+|.||||+|+.++   +.+++++|+++|+
T Consensus        73 TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad----------------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         73 TPLCTILSNIKDYKHMLDIVKILIENGAD----------------INKKNSDGETPLYCLLSNGYINNLEILLFMIENGA  136 (489)
T ss_pred             ChHHHHHHhHHhHHhHHHHHHHHHHCCCC----------------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC
Confidence            999999864     679999999999877                5778999999999999986   7899999999999


Q ss_pred             CCCcCCCCCCChHHHHHHHhCC---HHHHHHHHHhCCCCCCCC-CCCCCHHHHHHHc---CCCHHHHHHHHhhCCCcccc
Q 008102          149 AVPYSTNGCGETPLYMAAERGF---EKMLTEILENCPSVAHEG-PSGKTALHAAAVN---INSIDVVKLLLDKKKSLIGE  221 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~---~~~~~~~~~Ll~~~~~~~~~  221 (577)
                      +++ ..|..|.||||+|++.|+   .+++++|+++|++++..+ ..|.||||.++..   .++.+++++|+++|.+ ++.
T Consensus       137 dvn-~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~  214 (489)
T PHA02798        137 DTT-LLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI-INK  214 (489)
T ss_pred             Ccc-ccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC-ccc
Confidence            886 788999999999999998   999999999999998874 5789999998764   1479999999999987 677


Q ss_pred             CCCCCCcHHH-------HHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCC
Q 008102          222 TDRYGWTPLH-------YASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR  294 (577)
Q Consensus       222 ~d~~g~tpL~-------~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  294 (577)
                      .+..|.++++       .+...++.+++++|+.. .+++  ..+..|.||||+|+..|+.+++++|++.|++ ++.+|..
T Consensus       215 ~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~-~dvN--~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~  290 (489)
T PHA02798        215 ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY-IDIN--QVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITEL  290 (489)
T ss_pred             CCccccchHHHHHHHHHhhcccchHHHHHHHHhc-CCCC--CcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCC
Confidence            7888888876       23455677888887764 5654  4445899999999999999999999999999 8899999


Q ss_pred             CCchhhHHHhcCChhHHHHHHhccccccccccCC
Q 008102          295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDK  328 (577)
Q Consensus       295 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~  328 (577)
                      |+||||.|+.+++.++++.|+++    +.+++..
T Consensus       291 G~TpL~~A~~~~~~~iv~~lL~~----~~~~~~i  320 (489)
T PHA02798        291 GNTCLFTAFENESKFIFNSILNK----KPNKNTI  320 (489)
T ss_pred             CCcHHHHHHHcCcHHHHHHHHcc----CCCHHHH
Confidence            99999999999999999999998    5555433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=250.37  Aligned_cols=206  Identities=26%  Similarity=0.315  Sum_probs=180.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC-CCCCcHHHHHHhc
Q 008102          159 ETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD-RYGWTPLHYASYF  236 (577)
Q Consensus       159 ~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~tpL~~A~~~  236 (577)
                      ..-++.|++.|..+-++.|++. |.+++..|.+|.|+||+|+.+ ++.+++++|++++++ ++..+ .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gad-vn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGAD-VNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCC-ccccCCCCCCCcchHHHHc
Confidence            4556788888888888888888 888888888888888888888 888888888888888 45555 6788999999999


Q ss_pred             CcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHh
Q 008102          237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN  316 (577)
Q Consensus       237 g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  316 (577)
                      |+..++..|+++|+++.  ..+.+|.+|||.|++.|+.-++-+++.++.+ ++.+|.+|+||||+|+.++....++.|++
T Consensus       123 G~~~vv~lLlqhGAdpt--~~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPT--LKDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFALFVRRLLK  199 (600)
T ss_pred             CcHHHHHHHHHcCCCCc--eecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcccHHHHHHHH
Confidence            99999999999999886  3345799999999999999999999999977 88999999999999999999888888888


Q ss_pred             ccccccccccCCC-CCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          317 NYPIVRNLINDKD-KEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       317 ~~~~~~~~~n~~d-~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      -    ++.++..| ++|+||||.|+..|+...+. ++++.|++.+.+|.+|+||+++|.
T Consensus       200 f----~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  200 F----GASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             h----cccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHH
Confidence            7    88888888 99999999999999777777 999999999999999999999997

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=245.08  Aligned_cols=185  Identities=20%  Similarity=0.215  Sum_probs=164.1

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhh-cCCc---------cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccC
Q 008102            4 DPLLYEAAAKGEIEPFKEISNV-LGRV---------VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNA   73 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~-~~~~---------~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~   73 (577)
                      -++|..||++|+.+++++|++. +.+.         -..-+|-+||..|+..||   .++|+.|++    .+..+|....
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGH---l~vVk~L~~----~ga~VN~tT~  115 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGH---LEVVKLLLR----RGASVNDTTR  115 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCc---HHHHHHHHH----hcCccccccc
Confidence            3678899999999999999983 2221         112367899999999999   999999987    4588888888


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      ...|||--||.-|+.++|++|++++++                ++..|..|+|.||+|+..||.+++++|++.|++++ .
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad----------------~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~  178 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGAD----------------PEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-A  178 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCC----------------CcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-h
Confidence            888999999999999999999999887                46789999999999999999999999999999997 7


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK  214 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~  214 (577)
                      ++..|.|+||.|++.|+.+++++|+++|+.++. |..|.|||..|+.. |+.+++++|++.
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~t-G~~~iVe~L~~~  237 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVT-GHTDIVERLLQC  237 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhh-cchHHHHHHhcC
Confidence            888899999999999999999999999987664 45599999999999 999999999954

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.1e-29  Score=256.28  Aligned_cols=311  Identities=15%  Similarity=0.097  Sum_probs=222.4

Q ss_pred             CCCcccee-eeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHH-hCCHHHHHHHHHHHHcCCchhhcccc-
Q 008102           34 NKNTILHV-NIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAK-CGHASVVTALIEIAKKQPKELESGVE-  110 (577)
Q Consensus        34 ~g~t~Lh~-A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~~-  110 (577)
                      +|.+++|+ |..+|+   .|++++|++    .|..++.++..|.||+|+|+. .++.|++++|++.|++.......+.. 
T Consensus        70 ~~~~~~~~~~s~n~~---lElvk~LI~----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~  142 (631)
T PHA02792         70 NDFDIFEYLCSDNID---IELLKLLIS----KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKI  142 (631)
T ss_pred             CCccHHHHHHHhccc---HHHHHHHHH----cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcch
Confidence            44556653 344566   667766655    466666666666666676654 46777777777766552211111111 


Q ss_pred             -------------------chHHHhhccCCCCCCcHhHHHHHcC-------CHHHHHHHHhcCCCCCcCCCCCCChHHHH
Q 008102          111 -------------------STARQMLGMTNDEKNTALHEAMQHR-------SLDVVKILIKEDPAVPYSTNGCGETPLYM  164 (577)
Q Consensus       111 -------------------~~~~~~l~~~~~~g~t~Lh~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~  164 (577)
                                         ..-...++.+|..|.||||+|+.++       +.|+++.|+++|++++ ..|..|.||||+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~-~~d~~g~t~l~~  221 (631)
T PHA02792        143 IIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR-YYTYREHTTLYY  221 (631)
T ss_pred             hhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC-ccCCCCChHHHH
Confidence                               0012346788899999999999999       8999999999999987 567789999999


Q ss_pred             HHHhC--CHHHHHHHHHhCCCCC-------------C------CCC-------CCC------------------------
Q 008102          165 AAERG--FEKMLTEILENCPSVA-------------H------EGP-------SGK------------------------  192 (577)
Q Consensus       165 A~~~g--~~~~v~~Ll~~~~~~~-------------~------~~~-------~g~------------------------  192 (577)
                      |+.+.  +.|+++.|++..-+-.             .      .|.       .|.                        
T Consensus       222 ~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~  301 (631)
T PHA02792        222 YVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKR  301 (631)
T ss_pred             HHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHH
Confidence            99999  8899999987432100             0      000       011                        


Q ss_pred             ------CHHHHHHHc-CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcch
Q 008102          193 ------TALHAAAVN-INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTAL  265 (577)
Q Consensus       193 ------t~L~~A~~~-~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL  265 (577)
                            -.||.-..+ .-+.+++++|++.|.+..   ......+++.|+..|+.+++++|+++|++++....+..+.|||
T Consensus       302 ~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpL  378 (631)
T PHA02792        302 YTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPL  378 (631)
T ss_pred             HhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHH
Confidence                  112222222 125788999999988742   1235667899999999999999999999986432222357999


Q ss_pred             hHhhhcCcH---HHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHH-
Q 008102          266 HLAAGQGKL---RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA-  341 (577)
Q Consensus       266 ~~A~~~g~~---~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~-  341 (577)
                      |.|......   ++++++++++++ ++.+|..|+||||+|+..++.+++++|+++    |+++|.+|..|+||||+|+. 
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~----GADIN~kD~~G~TpL~~A~~~  453 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDN----GADINITTKYGSTCIGICVIL  453 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHH
Confidence            998876654   468888999999 789999999999999999999999999998    99999999999999999976 


Q ss_pred             -hCCc-------cceeccccCcccchh
Q 008102          342 -LCRD-------SFHRIVPWNVGGDYQ  360 (577)
Q Consensus       342 -~~~~-------~~~~~lL~~~g~d~~  360 (577)
                       .+..       ..+..+|+++|.+++
T Consensus       454 ~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        454 AHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HhcccHHHHHHHHHHHHHHHhcCCChh
Confidence             2211       234577778887765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4.6e-29  Score=247.87  Aligned_cols=210  Identities=27%  Similarity=0.302  Sum_probs=187.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHH-HHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           76 DAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        76 ~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      .+.++.|++.|..+-|+.|++. +..                ++..|.+|.|+||+|+.+++.+++++|++++++++..-
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~----------------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g  108 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGES----------------VNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIG  108 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcC----------------CCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccC
Confidence            4567899999999999999997 333                56688899999999999999999999999999998777


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      ..-+.||||+|+++|+..++++|+++|+|++.+|.+|.+|+|.|+.. ++.-++-+++.++.+ ++.+|.+|+||||+|+
T Consensus       109 G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~-~~~~~vayll~~~~d-~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  109 GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF-GHTALVAYLLSKGAD-IDLRDNNGRTPLMWAA  186 (600)
T ss_pred             CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh-CchHHHHHHHHhccc-CCCcCCCCCCHHHHHH
Confidence            67899999999999999999999999999999999999999999999 999999999999966 8999999999999999


Q ss_pred             hcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhc
Q 008102          235 YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS  305 (577)
Q Consensus       235 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  305 (577)
                      .+|+...++.|++-+++.. ..++..|+||||+|+..|+..++. |+..+....+..|.+|.||+..|.+.
T Consensus       187 ykg~~~~v~~LL~f~a~~~-~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  187 YKGFALFVRRLLKFGASLL-LTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccHHHHHHHHhccccc-ccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999888999999888875 344458999999999999999999 55555555788888899999988766

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=1.7e-27  Score=195.65  Aligned_cols=109  Identities=42%  Similarity=0.627  Sum_probs=95.4

Q ss_pred             hhhhhcchhhhHHHHHHHHhhhhhccCCCCCCCCCCCCCcccccccCc-cchhHHHHhHHHHHHHHHHHHHHHHhhcchh
Q 008102          424 GMKEASEFHLVVATLIATVAFSAAFTLPGGNKSEGSPDQGAAILSKQA-AFQAFVISDAIAMALSLSAVFVYFILSLKAF  502 (577)
Q Consensus       424 ~~~~~~~s~~vvA~LiatvtFaa~~t~PGg~~~~~~~~~g~~~~~~~~-~f~~F~~~~~~a~~~s~~~~~~~~~~~~~~~  502 (577)
                      +++++++++++||+|||||||+|++|||||+||+++ +.|+|++.+++ .|++|+++|++||++|++++++++ ....+.
T Consensus         3 ~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~-~~~~~~   80 (113)
T PF13962_consen    3 WLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDD-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI-SGLDDF   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH-HHhhhH
Confidence            389999999999999999999999999999999875 89999999887 999999999999999999999987 334222


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 008102          503 -QEFIFLFAFALFFTLVAMAAMMVAFVTGAYAM  534 (577)
Q Consensus       503 -~~~~~~~~~~~~~~~~~~~~m~~af~~~~~~~  534 (577)
                       +.....+.++..++++++.+|++||++|+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   81 RRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             22334566899999999999999999999875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-27  Score=246.27  Aligned_cols=320  Identities=17%  Similarity=0.160  Sum_probs=285.5

Q ss_pred             CCHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            3 MDPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      +++.|..|++.|+.|+++.|+.+|.++ ..+..|.+||.+|+..||   ..+|+.|+..   ....-...|..++|+|.+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh---~tvV~~llk~---ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGH---ITVVQDLLKA---HADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCc---hHHHHHHHhh---hhhhhhhcccccCceEEE
Confidence            577899999999999999999999998 566689999999999999   9999999763   333334578899999999


Q ss_pred             HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC-CCCCCh
Q 008102           82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST-NGCGET  160 (577)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t  160 (577)
                      ||..|+.++|+.||..|++.                ..++-...|||.+|...|..++++.|+..|.+++... .+.|-+
T Consensus       831 acsggr~~vvelLl~~gank----------------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgis  894 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANK----------------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGIS  894 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccc----------------cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcc
Confidence            99999999999999999874                3477788999999999999999999999999887554 456899


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcH
Q 008102          161 PLYMAAERGFEKMLTEILENCPSVAH-EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN  239 (577)
Q Consensus       161 pL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~  239 (577)
                      ||++|...|+.+.++.|++.|.|+|. ...+.+|+|-+|+.. |..+++..||....+ ...+-..|.|||+-++..|..
T Consensus       895 PLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq-gr~evv~lLLa~~an-vehRaktgltplme~AsgGyv  972 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ-GRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYV  972 (2131)
T ss_pred             hhhhhhhccccHHHHHHhcccchhccccccccccceeecccc-CcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCcc
Confidence            99999999999999999999999886 445678999999999 999999999999887 678888999999999999999


Q ss_pred             HHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccc
Q 008102          240 IIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP  319 (577)
Q Consensus       240 ~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  319 (577)
                      ++-+.|+..|+|.+.........|+|-+++..|+.+.++.|++..+. +..++++|.|+|..|+..|....+.+|+++  
T Consensus       973 dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~-- 1049 (2131)
T KOG4369|consen  973 DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSS-- 1049 (2131)
T ss_pred             ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhc--
Confidence            99999999999987655555667999999999999999999988777 788999999999999999999999999999  


Q ss_pred             cccccccCCCCCCCcHHHHHHHhCCccceecc
Q 008102          320 IVRNLINDKDKEGNTPLHLLAALCRDSFHRIV  351 (577)
Q Consensus       320 ~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~l  351 (577)
                        +++++.+|+.-+|+++-|.++|+..++.+.
T Consensus      1050 --~ad~d~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1050 --VADADQQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             --ccChhhhhcccccccHHHHHhchhheeccc
Confidence              999999999999999999999966655443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.6e-25  Score=205.58  Aligned_cols=179  Identities=19%  Similarity=0.195  Sum_probs=134.8

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcC--CHHHHHHHHhcCCC
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHR--SLDVVKILIKEDPA  149 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~  149 (577)
                      ...+.||||.|+..|+.++|+.|++..                   +..|..|.||||+|+..+  +.+++++|+++|++
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~-------------------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad   78 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV-------------------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD   78 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh-------------------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC
Confidence            456688899999999999888888642                   346778888998888754  78888888888888


Q ss_pred             CCcCCCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc-CCCHHHHHHHHhhCCCccccCCCC
Q 008102          150 VPYSTNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHAAAVN-INSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       150 ~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      ++...+..|.||||+|+..   ++.+++++|+++|++++.++..|.||||.|+.. .++.+++++|++.+.+ ++.+|..
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~  157 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFD  157 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCC
Confidence            8744445788888887753   468888888888888888888888888887753 2568888888888777 5777778


Q ss_pred             CCcHHHH-HHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcC
Q 008102          226 GWTPLHY-ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG  272 (577)
Q Consensus       226 g~tpL~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  272 (577)
                      |.||||. ++..++.+++++|++.|.+++  ..+..|.||||+|..++
T Consensus       158 g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        158 NNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhhh
Confidence            8888875 455667777777777777664  23346777777776554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.5e-25  Score=203.43  Aligned_cols=180  Identities=22%  Similarity=0.161  Sum_probs=117.6

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhC--CHHHHHHHHHhCCCCCCCC-CCCCCHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG--FEKMLTEILENCPSVAHEG-PSGKTALHA  197 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~  197 (577)
                      ...+.||||+|+..|+.++|+.|++..    ...|..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||.
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            556678888888888888888777642    245666777777777643  6777777777777777665 367777777


Q ss_pred             HHHc--CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH
Q 008102          198 AAVN--INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR  275 (577)
Q Consensus       198 A~~~--~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  275 (577)
                      |+..  .++.+++++|++++.+ ++.+|..|.||||.|+..                                 ..++.+
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~---------------------------------~~~~~~  139 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCN---------------------------------FNVRIN  139 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHh---------------------------------ccCCHH
Confidence            6543  1245666666665555 455555555555554321                                 124556


Q ss_pred             HHHHHHhhCCcccccccCCCCchhhH-HHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          276 VVEEIISYCPECCELVDGRGWNVLHF-AMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      ++++|++.+.+ ++.+|..|+||||. |+..++.+++++|+++    |++++.+|..|.||||+|...+
T Consensus       140 iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~----Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        140 VIKLLIDSGVS-FLNKDFDNNNILYSYILFHSDKKIFDFLTSL----GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHcCCC-cccccCCCCcHHHHHHHhcCCHHHHHHHHHc----CCCCCCCCCCCCCHHHHHhhhh
Confidence            66666666655 55667777777774 4556677777777776    7777777777778887777553

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=220.17  Aligned_cols=211  Identities=13%  Similarity=0.034  Sum_probs=159.0

Q ss_pred             HHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHH--cCCCHHHHHHHH
Q 008102          141 KILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA------HEGPSGKTALHAAAV--NINSIDVVKLLL  212 (577)
Q Consensus       141 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~--~~~~~~~~~~Ll  212 (577)
                      ++++.+|.+++ ....+|     +|+..+..|++++|+.+|++++      ..+..++|+||.++.  . ++.+++++|+
T Consensus        66 ~~~~~~~~~i~-~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI  138 (437)
T PHA02795         66 DYFRIHRDNID-QYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMV  138 (437)
T ss_pred             HHHHHcCcchh-hhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHH
Confidence            55666666554 222222     6777777777777777777766      456667777777777  5 6777777777


Q ss_pred             hhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhc----CCCCCcchhHhhhcCcHHHHHHHHhhCCccc
Q 008102          213 DKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD----NDRKMTALHLAAGQGKLRVVEEIISYCPECC  288 (577)
Q Consensus       213 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~  288 (577)
                      ++|++ ++.  .++.||+|.|+..++.+++++|+++|++.....+    +..+.+|+|.|+..++.+++++|+++|++ +
T Consensus       139 ~~GAD-In~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-I  214 (437)
T PHA02795        139 DHGAV-IYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-I  214 (437)
T ss_pred             HCCCC-CCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-c
Confidence            77776 333  2346777777777777777777777754321110    12367899999999999999999999998 7


Q ss_pred             ccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCC-------ccceeccccCcccchhh
Q 008102          289 ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCR-------DSFHRIVPWNVGGDYQA  361 (577)
Q Consensus       289 ~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~-------~~~~~~lL~~~g~d~~~  361 (577)
                      +.+|..|+||||+|+..|+.+++++|+++    |+++|.+|..|.||||+|+..|+       ...+.++|+++|++++.
T Consensus       215 N~kD~~G~TpLh~Aa~~g~~eiVelLL~~----GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        215 NQLDAGGRTLLYRAIYAGYIDLVSWLLEN----GANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            89999999999999999999999999998    99999999999999999999884       23577889999999988


Q ss_pred             hhhCC
Q 008102          362 VNKQN  366 (577)
Q Consensus       362 ~n~~G  366 (577)
                      ....+
T Consensus       291 ~~~~~  295 (437)
T PHA02795        291 IKLAI  295 (437)
T ss_pred             hhHHh
Confidence            66543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=4.9e-26  Score=195.70  Aligned_cols=264  Identities=21%  Similarity=0.196  Sum_probs=223.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      ..+..+...|-.+--..|.....                  ...+..|..-+-.+.+.|+.+++..+..-+++-+...+.
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~s------------------~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p   94 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEIS------------------ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDP   94 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHHH------------------HHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCc
Confidence            34555555555555555554322                  234566777788899999999999999888887777888


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.++++.++-.|+.+.+..++.++...+..+..+.+|+.+++.. .+.+....+.+.   ..+..|+.|.|||.+|+.+
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNN---KVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhc---cccCccccCchHhHHHHhc
Confidence            899999999999999999999999999999999999999999988 677766665543   3789999999999999999


Q ss_pred             CcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHh
Q 008102          237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN  316 (577)
Q Consensus       237 g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  316 (577)
                      |+..++++|++.|+++....  ....++|.+|+..|..++|+.|+..+++ ++..|-+|-|||-+|++.++.++++.|+.
T Consensus       171 G~i~vV~fLL~~GAdp~~lg--k~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~  247 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGADPDALG--KYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN  247 (296)
T ss_pred             CchHHHHHHHHcCCChhhhh--hhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh
Confidence            99999999999999986443  3577999999999999999999999999 89999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHH
Q 008102          317 NYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKH  371 (577)
Q Consensus       317 ~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~  371 (577)
                      .    |++++..|..|++++.+|+..| +. ..+..+++-++.+.+|+.-+||+|
T Consensus       248 s----GAd~t~e~dsGy~~mdlAValG-yr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  248 S----GADVTQEDDSGYWIMDLAVALG-YR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             c----CCCcccccccCCcHHHHHHHhh-hH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            9    9999999999999999999999 45 444455666778888887777764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.93  E-value=9.4e-26  Score=232.94  Aligned_cols=324  Identities=20%  Similarity=0.179  Sum_probs=283.0

Q ss_pred             cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccc
Q 008102           30 VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGV  109 (577)
Q Consensus        30 ~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  109 (577)
                      .+..+-.|+|-.||..||   .|.+++++.    .+..+..+|..|.+||.+|+-.||..+|+.|+...++..       
T Consensus       752 ~Te~n~~t~LT~acaggh---~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve-------  817 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGH---REEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-------  817 (2131)
T ss_pred             ccCccccccccccccCcc---HHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhh-------
Confidence            343466899999999999   999999876    688889999999999999999999999999999866531       


Q ss_pred             cchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-
Q 008102          110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-  188 (577)
Q Consensus       110 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-  188 (577)
                              ...|..++|+|-+||..|..++|+.||..+.+-. .+|-...|||.+|..-|..++++.|+..|..++.+. 
T Consensus       818 --------aQsdrtkdt~lSlacsggr~~vvelLl~~ganke-hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtg  888 (2131)
T KOG4369|consen  818 --------AQSDRTKDTMLSLACSGGRTRVVELLLNAGANKE-HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTG  888 (2131)
T ss_pred             --------hhcccccCceEEEecCCCcchHHHHHHHhhcccc-ccchhhcCchhhhcCcchHHHHHHHhhcccccccccc
Confidence                    3467889999999999999999999999988765 677788999999999999999999999998887654 


Q ss_pred             -CCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhH
Q 008102          189 -PSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHL  267 (577)
Q Consensus       189 -~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~  267 (577)
                       +.|-+||..|..+ |+.+.++.|++.+.++......+-+|.|.+|+..|+.+++.+||...+....  ..+.|.|||+-
T Consensus       889 SklgisPLmlatmn-gh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anveh--Raktgltplme  965 (2131)
T KOG4369|consen  889 SKLGISPLMLATMN-GHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEH--RAKTGLTPLME  965 (2131)
T ss_pred             cccCcchhhhhhhc-cccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhh--hcccCCcccch
Confidence             5688999999999 9999999999999997666777889999999999999999999998877653  33479999999


Q ss_pred             hhhcCcHHHHHHHHhhCCccccc-ccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcc
Q 008102          268 AAGQGKLRVVEEIISYCPECCEL-VDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS  346 (577)
Q Consensus       268 A~~~g~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~  346 (577)
                      ++..|.+|+-+.|+..|+|..-. .-....|+|-+++..|+.+.+..|+..    .+-+..++++|+|+|-+|+.-| ..
T Consensus       966 ~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~----~atv~v~NkkG~T~Lwla~~Gg-~l 1040 (2131)
T KOG4369|consen  966 MASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNG----DATVRVPNKKGCTVLWLASAGG-AL 1040 (2131)
T ss_pred             hhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCC----ccceecccCCCCcccchhccCC-cc
Confidence            99999999999999999983222 223456999999999999999999987    7788899999999999999888 67


Q ss_pred             ceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHH
Q 008102          347 FHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEI  384 (577)
Q Consensus       347 ~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l  384 (577)
                      ..+.+|+++++|++..|+.-.|++.-|. .|+..+++|.
T Consensus      1041 ss~~il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~m 1079 (2131)
T KOG4369|consen 1041 SSCPILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKM 1079 (2131)
T ss_pred             ccchHHhhcccChhhhhcccccccHHHHHhchhheeccc
Confidence            7889999999999999999999988776 6666665553

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=9e-25  Score=219.75  Aligned_cols=256  Identities=22%  Similarity=0.217  Sum_probs=188.5

Q ss_pred             CCCCHHHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHH
Q 008102            1 MVMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLH   80 (577)
Q Consensus         1 ~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh   80 (577)
                      |.|++.|..|++.||++.++.|++...       ++.++-.+-..                   +...+..|.+|.|+||
T Consensus         1 mgk~qel~~a~ka~d~~tva~ll~~~~-------~r~~~l~~~tr-------------------sds~n~qd~~gfTalh   54 (854)
T KOG0507|consen    1 MGKKQELIDACKAGDYDTVALLLSSKK-------GRSGLLFFTTR-------------------SDSHNLQDYSGFTLLH   54 (854)
T ss_pred             CchhhhHHHhhhcccHHHHHHhccCCC-------CCCCCCCCCCC-------------------CccccccCccchhHHH
Confidence            678999999999999999999998421       11111111111                   2233445668889999


Q ss_pred             HHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102           81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET  160 (577)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  160 (577)
                      .|+.+|+.++++.|++..                ..++..|..|.+|||+|+..|+.++++.++.++.. .+..+..|+|
T Consensus        55 ha~Lng~~~is~llle~e----------------a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~t  117 (854)
T KOG0507|consen   55 HAVLNGQNQISKLLLDYE----------------ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENET  117 (854)
T ss_pred             HHHhcCchHHHHHHhcch----------------hhhhhhhccCcceEEehhhcCcchHHHHHHhcccC-CCcccccCcC
Confidence            999999999999988853                34677778889999999999999999999888844 4477778999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCc-------cccCCCCCCcHHHHH
Q 008102          161 PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL-------IGETDRYGWTPLHYA  233 (577)
Q Consensus       161 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~-------~~~~d~~g~tpL~~A  233 (577)
                      |||.|+++|+.+++.+|+++++|+..+++.+.|+|..|++. |..++++.|++..-..       ...++-.+.+|||.|
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qf-gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHla  196 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRF-GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLA  196 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHh-hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchh
Confidence            99999999999999999999999888899999999999988 8899888888762111       123344556677777


Q ss_pred             HhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHh
Q 008102          234 SYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV  304 (577)
Q Consensus       234 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (577)
                      +++|+.++++.|++.|.++++...   .-|+||.|+..|..++++.|++.+.. ...+|.+|+|+|.+-..
T Consensus       197 akngh~~~~~~ll~ag~din~~t~---~gtalheaalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  197 AKNGHVECMQALLEAGFDINYTTE---DGTALHEAALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIID  263 (854)
T ss_pred             hhcchHHHHHHHHhcCCCcccccc---cchhhhhHhhcCcchhhhHHHhhccc-cccccccchHHHHHHHh
Confidence            777777777777777776654332   24677777777777777777777666 56667777777665543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=211.75  Aligned_cols=237  Identities=12%  Similarity=0.083  Sum_probs=185.0

Q ss_pred             HHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH
Q 008102           53 STEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM  132 (577)
Q Consensus        53 ~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~  132 (577)
                      -++.|.+++-..+..++.+..+|     +|+..+..|++++|+.++++.+-         ....+ .++..++|+||+++
T Consensus        60 ~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~---------~~~~~-~~~~~~~~~L~~~~  124 (437)
T PHA02795         60 PVDVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDI---------FSIII-KNCNSVQDLLLYYL  124 (437)
T ss_pred             HHHHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccch---------hhhhh-hccccccHHHHHHH
Confidence            34444554555677777777776     99999999999999999877321         00111 36778999999999


Q ss_pred             H--cCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC------CCCCCHHHHHHHcCCC
Q 008102          133 Q--HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG------PSGKTALHAAAVNINS  204 (577)
Q Consensus       133 ~--~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~------~~g~t~L~~A~~~~~~  204 (577)
                      .  .|+.+++++|+++|++++.   ..+.||+|.|+..|+.+++++|+++|++.....      ..+.+++|.|... ++
T Consensus       125 ~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~-~~  200 (437)
T PHA02795        125 SNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP-TV  200 (437)
T ss_pred             HhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc-CH
Confidence            9  8999999999999999863   345899999999999999999999997533221      3477889999888 89


Q ss_pred             HHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc--------HHH
Q 008102          205 IDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK--------LRV  276 (577)
Q Consensus       205 ~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~--------~~i  276 (577)
                      .+++++|++++++ ++.+|..|.||||+|+..|+.+++++|+++|++++  ..+..|.||||.|+.+|+        .++
T Consensus       201 ~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh~Aa~~g~~~~~~~~~~eI  277 (437)
T PHA02795        201 LEIYKLCIPYIED-INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLDVAVDRGSVIARRETHLKI  277 (437)
T ss_pred             HHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCCcccccccHHHH
Confidence            9999999999988 78899999999999999999999999999999886  334579999999999884        689


Q ss_pred             HHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       277 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                      ++.|++++++ ++..+.   +++..  ...+.++++.++++
T Consensus       278 velLL~~gad-I~~~~~---~~~~~--~~~n~~~ik~lI~y  312 (437)
T PHA02795        278 LEILLREPLS-IDCIKL---AILNN--TIENHDVIKLCIKY  312 (437)
T ss_pred             HHHHHhCCCC-CCchhH---Hhhhc--ccchHHHHHHHHHH
Confidence            9999998887 333222   22111  11256788888876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=3e-22  Score=221.35  Aligned_cols=245  Identities=18%  Similarity=0.125  Sum_probs=178.8

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhc--CCCCCcCCCCCCChHHH-HHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          122 DEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLY-MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~tpL~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      ..+..+|+.|++.|+.+.++.++++  +.+++ ..|..|+|||| .|+..++.++++.|++.+.    .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNIN-CPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCC-CcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHH
Confidence            3567899999999999999999998  55554 67888999999 8899999999999999987    577899999999


Q ss_pred             HHc--CCCHHHHHHHHhhCCC-----cc----ccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhc----------
Q 008102          199 AVN--INSIDVVKLLLDKKKS-----LI----GETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD----------  257 (577)
Q Consensus       199 ~~~--~~~~~~~~~Ll~~~~~-----~~----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------  257 (577)
                      +..  .+..+++..+....+.     ..    ...+..|.||||+|+..|+.++++.|+++|++++....          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            873  1222333444433321     01    11235699999999999999999999999988763211          


Q ss_pred             --CCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC---------hhHHHHHHhccccccccc-
Q 008102          258 --NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD---------ASDLKHLLNNYPIVRNLI-  325 (577)
Q Consensus       258 --~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~~~~-  325 (577)
                        ...|.+|||.|+..|+.++++.|++++++ ++..|..|+||||+|+..+.         ..+.+++++... ...+. 
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~-~~~~~~  247 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLD-KLRDSK  247 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh-ccCChH
Confidence              12578999999999999999999988877 67888999999999988762         224444544311 01222 


Q ss_pred             ---cCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          326 ---NDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       326 ---n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                         +.+|.+|.||||+|+..| ...+.++|++.+.+..........|.+.+.
T Consensus       248 el~~i~N~~g~TPL~~A~~~g-~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEG-RIVLFRLKLAIKYKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcC-CccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence               667889999999999888 455566666655554444555555655554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.4e-22  Score=223.97  Aligned_cols=220  Identities=24%  Similarity=0.151  Sum_probs=176.6

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHh--CCCCCCCCCCCCCHHH-HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102          157 CGETPLYMAAERGFEKMLTEILEN--CPSVAHEGPSGKTALH-AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA  233 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  233 (577)
                      .++.+++.|++.|+.+.++.+++.  +.+++..|..|+|||| .|+.+ ++.++++.|++.+.     .+..|.||||.|
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~-~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIEN-ENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhc-ChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            467899999999999999999999  7899999999999999 66666 99999999998775     577899999999


Q ss_pred             HhcC---cHHHHHHHhcCCCCcc--------chhcCCCCCcchhHhhhcCcHHHHHHHHhhCCccccccc----------
Q 008102          234 SYFD---RNIIAELLLNSDKSLA--------YIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVD----------  292 (577)
Q Consensus       234 ~~~g---~~~~v~~Ll~~~~~~~--------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d----------  292 (577)
                      +..+   ...+++.+...+.+..        ...+...|.||||+|+.+|+.++++.|+++|++ ++.++          
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd-v~~~~~~~~~~~~~~  168 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS-VPARACGDFFVKSQG  168 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC-CCcCcCCchhhcCCC
Confidence            9732   2334445554443210        011224699999999999999999999999988 33331          


Q ss_pred             ----CCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCc--------cceeccccCcccc--
Q 008102          293 ----GRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRD--------SFHRIVPWNVGGD--  358 (577)
Q Consensus       293 ----~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~--------~~~~~lL~~~g~d--  358 (577)
                          ..|+||||.|+..++.+++++|+++    |+++|.+|..|+||||+|+..+..        ..+..++.+.+++  
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~----gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~  244 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSED----PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLR  244 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcC----CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccC
Confidence                3689999999999999999999998    899999999999999999988521        1233445544444  


Q ss_pred             -h----hhhhhCCCChHHHHh-cCCcchHHHHHHH
Q 008102          359 -Y----QAVNKQNISVKHITR-YGFPQLEQEIREL  387 (577)
Q Consensus       359 -~----~~~n~~G~t~l~~a~-~~~~~~~~~l~~~  387 (577)
                       .    +.+|++|.||+++|+ .++.++.+.+.+.
T Consensus       245 ~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       245 DSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             ChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence             3    788999999999999 8889999888774

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=2.2e-24  Score=185.56  Aligned_cols=236  Identities=22%  Similarity=0.288  Sum_probs=124.5

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchH
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA  113 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  113 (577)
                      .|.+.+-.+...|+   .+.+.....   .++..+...+.+|..++|.|+-+|+...+..++..++..            
T Consensus        61 lge~~~~~~~~s~n---sd~~v~s~~---~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg------------  122 (296)
T KOG0502|consen   61 LGESLLTVAVRSGN---SDVAVQSAQ---LDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG------------  122 (296)
T ss_pred             cCCcccchhhhcCC---cHHHHHhhc---cCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC------------
Confidence            34444444555555   444444322   234444444445555555555555555555555544332            


Q ss_pred             HHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCC
Q 008102          114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT  193 (577)
Q Consensus       114 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  193 (577)
                          +..+-.+.+|+.+++...+.+.+..+.++.   .+..|+.|.|||.+|+..|+.++|++|++.|++++...+...+
T Consensus       123 ----nevs~~p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~res  195 (296)
T KOG0502|consen  123 ----NEVSLMPWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRES  195 (296)
T ss_pred             ----CccccccCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhh
Confidence                223444555555555555555444444321   1244555555555555555555555555555555555555555


Q ss_pred             HHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc
Q 008102          194 ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK  273 (577)
Q Consensus       194 ~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  273 (577)
                      +|..|++. |..++++.|+.++.+ .+..|.                                   +|.|||.+|++.|+
T Consensus       196 ALsLAt~g-gytdiV~lLL~r~vd-VNvyDw-----------------------------------NGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  196 ALSLATRG-GYTDIVELLLTREVD-VNVYDW-----------------------------------NGGTPLLYAVRGNH  238 (296)
T ss_pred             hHhHHhcC-ChHHHHHHHHhcCCC-cceecc-----------------------------------CCCceeeeeecCCh
Confidence            55555554 555555555555444 344444                                   45555555555555


Q ss_pred             HHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHH
Q 008102          274 LRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLH  337 (577)
Q Consensus       274 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh  337 (577)
                      .++++.|++.|++ ++..|..|++++..|+..|+. +|+..+++    ..+.+.+|+.-.||+|
T Consensus       239 vkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~----h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  239 VKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEK----HALKLCQDSEKRTPLH  296 (296)
T ss_pred             HHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHH----HHHHHhhcccCCCCCC
Confidence            5555555555555 455566666666666666665 55566655    5555666666666665

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-23  Score=210.68  Aligned_cols=255  Identities=23%  Similarity=0.238  Sum_probs=210.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      +=|.-|++.|+.+.+..|++.........   .........+..|.+|.|+||.|+.+|+.++++.|++..+-+. ..+.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l---~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ld-l~d~   80 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLL---FFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLD-LCDT   80 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCC---CCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhh-hhhc
Confidence            34667999999999999998643311100   0011223357788899999999999999999999999987765 5558


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.+|||+|+..|+.++++.++.++..++...-+|.||||.|+.. ++.+++.+|+.++.+ .-.+|..+.|+|..|++.
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh-gh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qf  158 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH-GHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRF  158 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh-cchHHHHHHHhcCCC-ccccCcccccHHHHHHHh
Confidence            899999999999999999999999988999999999999999999 999999999999998 788999999999999999


Q ss_pred             CcHHHHHHHhcCCCCccc------hhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhH
Q 008102          237 DRNIIAELLLNSDKSLAY------IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD  310 (577)
Q Consensus       237 g~~~~v~~Ll~~~~~~~~------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  310 (577)
                      |+.++++.|+...-...+      ......+.+|+|.|+++|+.++++.|+..+.+ ++.....| |+||.|+..|+.++
T Consensus       159 gr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~ev  236 (854)
T KOG0507|consen  159 GRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEV  236 (854)
T ss_pred             hhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchh
Confidence            999999999986322211      11223566789999999999999999998888 66666666 89999999999999


Q ss_pred             HHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          311 LKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       311 v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      +.+|++.    |.+.+.+|.+|.|+|.+....-
T Consensus       237 vr~ll~~----gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  237 VRFLLEI----GINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hhHHHhh----ccccccccccchHHHHHHHhcc
Confidence            9999987    8888889999999998887664

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=5.3e-22  Score=220.45  Aligned_cols=194  Identities=21%  Similarity=0.202  Sum_probs=166.4

Q ss_pred             CHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhC
Q 008102          136 SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK  215 (577)
Q Consensus       136 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~  215 (577)
                      +.++-..+.+.+..   ..+..+.++|+.|+..|+.++++.|++.|++++..|..|+||||.|+.. |+.++++.|++++
T Consensus       506 ~l~v~~ll~~~~~~---~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~g  581 (823)
T PLN03192        506 DLNVGDLLGDNGGE---HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHA  581 (823)
T ss_pred             cccHHHHHhhcccc---cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcC
Confidence            34444444444332   2344567999999999999999999999999999999999999999999 9999999999988


Q ss_pred             CCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCC
Q 008102          216 KSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRG  295 (577)
Q Consensus       216 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  295 (577)
                      .+ ++.+|.+|.||||.|+..|+.++++.|++.+...+    ...+.++||.|+.+|+.++++.|++++++ ++.+|..|
T Consensus       582 ad-in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~----~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G  655 (823)
T PLN03192        582 CN-VHIRDANGNTALWNAISAKHHKIFRILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQG  655 (823)
T ss_pred             CC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccC----cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCC
Confidence            87 78899999999999999999999999998765442    23577899999999999999999999998 78899999


Q ss_pred             CchhhHHHhcCChhHHHHHHhccccccccccCCCCCC-CcHHHHHHHhC
Q 008102          296 WNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEG-NTPLHLLAALC  343 (577)
Q Consensus       296 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G-~TpLh~A~~~~  343 (577)
                      +||||+|+..|+.+++++|+++    |++++.+|.+| .||++++....
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~----GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMN----GADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHc----CCCCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999999999999998    99999999988 89999886643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=4.7e-22  Score=220.90  Aligned_cols=190  Identities=19%  Similarity=0.170  Sum_probs=165.3

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCC
Q 008102          171 EKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK  250 (577)
Q Consensus       171 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  250 (577)
                      .++-..+.+.+..  ..+.++.++||.|+.. |+.++++.|++.+.+ ++..|.+|+||||+|+..|+.++++.|+++|+
T Consensus       507 l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~-g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        507 LNVGDLLGDNGGE--HDDPNMASNLLTVAST-GNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccHHHHHhhcccc--cCCccchhHHHHHHHc-CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            3344444444432  2345677999999999 999999999999988 79999999999999999999999999999999


Q ss_pred             CccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCC
Q 008102          251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDK  330 (577)
Q Consensus       251 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~  330 (577)
                      +++  ..+..|.||||.|+..|+.++++.|++.+...   ....|.++||.|+.+|+.++++.|+++    |+++|.+|.
T Consensus       583 din--~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~----Gadin~~d~  653 (823)
T PLN03192        583 NVH--IRDANGNTALWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQ----GLNVDSEDH  653 (823)
T ss_pred             CCC--CcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHC----CCCCCCCCC
Confidence            875  34458999999999999999999999876552   235677999999999999999999998    999999999


Q ss_pred             CCCcHHHHHHHhCCccceeccccCcccchhhhhhCC-CChHHHHh
Q 008102          331 EGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQN-ISVKHITR  374 (577)
Q Consensus       331 ~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G-~t~l~~a~  374 (577)
                      +|+||||+|+..| ...+.++|+++|+|++..|..| .||.+++.
T Consensus       654 ~G~TpLh~A~~~g-~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        654 QGATALQVAMAED-HVDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             CCCCHHHHHHHCC-cHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999 6778888899999999999999 99999886

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=2e-21  Score=189.53  Aligned_cols=227  Identities=22%  Similarity=0.185  Sum_probs=169.6

Q ss_pred             HhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHH
Q 008102          127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSID  206 (577)
Q Consensus       127 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~  206 (577)
                      .+..|+..|..+-++.|+..+... ...|.+|.|+||-+|...+.+||++|+++|++++..|..|+||||.|+.. ++..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~-~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP-NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc-cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHH
Confidence            356677778888888888877665 36777788888888888888888888888888888888888888888877 8888


Q ss_pred             HHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc---CcHHHHHHHHhh
Q 008102          207 VVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ---GKLRVVEEIISY  283 (577)
Q Consensus       207 ~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~  283 (577)
                      +++++++.+.+ ....+..|..|+..+......++...-....           |.+ +..+-..   --.+=++..+..
T Consensus       121 i~~~li~~gA~-~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~-----------gi~-iea~R~~~e~~ml~D~~q~l~~  187 (527)
T KOG0505|consen  121 IVEYLIQHGAN-LLAVNSDGNMPYDLAEDEATLDVLETEMARQ-----------GID-IEAARKAEEQTMLDDARQWLNA  187 (527)
T ss_pred             HHHHHHHhhhh-hhhccCCCCCccccccCcchhHHHHHHHHHh-----------ccc-HHHHhhhhHHHHHHHHHHHHhc
Confidence            88888888877 4556667777776665444443333332211           111 1111111   111223334445


Q ss_pred             CCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhh
Q 008102          284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVN  363 (577)
Q Consensus       284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n  363 (577)
                      |.+ ....+..|.|.||+|+.+|..++.++|++.    |..++.+|.+|+||||.|+..+ .+.++.+|.++|++.+.++
T Consensus       188 G~~-~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~a----g~~~~~~D~dgWtPlHAAA~Wg-~~~~~elL~~~ga~~d~~t  261 (527)
T KOG0505|consen  188 GAE-LDARHARGATALHVAAANGYTEVAALLLQA----GYSVNIKDYDGWTPLHAAAHWG-QEDACELLVEHGADMDAKT  261 (527)
T ss_pred             ccc-ccccccccchHHHHHHhhhHHHHHHHHHHh----ccCcccccccCCCcccHHHHhh-hHhHHHHHHHhhcccchhh
Confidence            555 556666799999999999999999999998    9999999999999999999999 6777779999999999999


Q ss_pred             hCCCChHHHHh
Q 008102          364 KQNISVKHITR  374 (577)
Q Consensus       364 ~~G~t~l~~a~  374 (577)
                      ..|+||+|+|.
T Consensus       262 ~~g~~p~dv~d  272 (527)
T KOG0505|consen  262 KMGETPLDVAD  272 (527)
T ss_pred             hcCCCCccchh
Confidence            99999999998

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=4e-20  Score=171.21  Aligned_cols=181  Identities=26%  Similarity=0.246  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHhhC-c----cccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCC
Q 008102           51 IVSTEFVEQILEMC-P----SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN  125 (577)
Q Consensus        51 ~~~~~~ll~~~~~~-~----~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~  125 (577)
                      .+.|+..+..++.- +    ..+|..|.+|+|+||||+..+++++|+.||+.|-               ..++.+|.-|.
T Consensus       239 pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv---------------C~VD~qNrAGY  303 (452)
T KOG0514|consen  239 PEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGV---------------CDVDQQNRAGY  303 (452)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCc---------------ccccccccccc
Confidence            45555444433332 2    2345567777777777777777777777777542               22566777777


Q ss_pred             cHhHHHHHc-----CCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102          126 TALHEAMQH-----RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV  200 (577)
Q Consensus       126 t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  200 (577)
                      ||+++|+..     .+.++|..|.+.| +++......|+|+|++|+.+|+.++|+.|+.-|+|+|.+|.+|.|+|+.|+.
T Consensus       304 tpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~E  382 (452)
T KOG0514|consen  304 TPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAE  382 (452)
T ss_pred             cHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhh
Confidence            777777654     3567777777654 5555566677777777777777777777777777777777777777777777


Q ss_pred             cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC
Q 008102          201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS  248 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  248 (577)
                      . |+.|+++.|+.....+....|.+|.|+|.+|...|+.+|.-+|+.+
T Consensus       383 H-GhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  383 H-GHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             h-ChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            7 7777777777776666677777777777777777777777766654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=3.3e-19  Score=165.18  Aligned_cols=173  Identities=24%  Similarity=0.249  Sum_probs=107.5

Q ss_pred             HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102          113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK  192 (577)
Q Consensus       113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  192 (577)
                      .+..+|..|.+|+|+||||+.++|+++|+.|+..|......+|..|.||+++++...-                      
T Consensus       257 L~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~l----------------------  314 (452)
T KOG0514|consen  257 LEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKL----------------------  314 (452)
T ss_pred             HHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhh----------------------
Confidence            3455777788888888888888888888888877766666777777777777764310                      


Q ss_pred             CHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcC
Q 008102          193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG  272 (577)
Q Consensus       193 t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g  272 (577)
                             ....+.+++..|...+.. .-+....|+|+|++|+.+|+.++++.||..|++++.  .+.+|.|+|++|+..|
T Consensus       315 -------k~~~d~~vV~~LF~mgnV-NaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNi--QDdDGSTALMCA~EHG  384 (452)
T KOG0514|consen  315 -------KQPADRTVVERLFKMGDV-NAKASQHGQTALMLAVSHGRVDMVKALLACGADVNI--QDDDGSTALMCAAEHG  384 (452)
T ss_pred             -------cchhhHHHHHHHHhccCc-chhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCcc--ccCCccHHHhhhhhhC
Confidence                   001234444455444432 223344566666666666666666666666666542  2225666666666666


Q ss_pred             cHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          273 KLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       273 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                      +.|+++.||..........|.+|-|+|.+|...|+.+|.-+|..+
T Consensus       385 hkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  385 HKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            666666666555444566677777777777777777776666554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=9.7e-20  Score=177.79  Aligned_cols=228  Identities=23%  Similarity=0.275  Sum_probs=184.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC
Q 008102           78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC  157 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  157 (577)
                      .+.-|+..|..+=|+.|+..++.+                +..|.+|.|+||-|+...+.+||++|+++++.++ ..|..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~----------------~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e  105 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP----------------NLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNE  105 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc----------------cccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccc
Confidence            466788899999999999987552                6689999999999999999999999999999997 67778


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD  237 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  237 (577)
                      |+||||.|+..|+..++++|+..|++....+.+|..|+..+... ...++...-.....          .+ + -+++..
T Consensus       106 ~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e-a~~~~l~~~~~r~g----------i~-i-ea~R~~  172 (527)
T KOG0505|consen  106 GWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE-ATLDVLETEMARQG----------ID-I-EAARKA  172 (527)
T ss_pred             cCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc-chhHHHHHHHHHhc----------cc-H-HHHhhh
Confidence            99999999999999999999999999999999999998877554 33444333332221          11 1 111111


Q ss_pred             ----cHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHH
Q 008102          238 ----RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKH  313 (577)
Q Consensus       238 ----~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  313 (577)
                          -+.-++..+..|..... ... .|-|.||+|+.+|..++.+.|++.+.+ ++.+|..|+||||.|+..++.++.++
T Consensus       173 ~e~~ml~D~~q~l~~G~~~d~-~~~-rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~el  249 (527)
T KOG0505|consen  173 EEQTMLDDARQWLNAGAELDA-RHA-RGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACEL  249 (527)
T ss_pred             hHHHHHHHHHHHHhccccccc-ccc-ccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHH
Confidence                12223344445655532 233 499999999999999999999999999 78999999999999999999999999


Q ss_pred             HHhccccccccccCCCCCCCcHHHHHHHh
Q 008102          314 LLNNYPIVRNLINDKDKEGNTPLHLLAAL  342 (577)
Q Consensus       314 Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~  342 (577)
                      |+++    +++++.+...|.||+.+|..-
T Consensus       250 L~~~----ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  250 LVEH----GADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHHh----hcccchhhhcCCCCccchhhh
Confidence            9998    999999999999999998753

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=1e-18  Score=156.24  Aligned_cols=138  Identities=17%  Similarity=0.279  Sum_probs=115.9

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCC----HHHHHHH
Q 008102           68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRS----LDVVKIL  143 (577)
Q Consensus        68 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~----~~~v~~L  143 (577)
                      ++.++..|.||||+|++.|+.++++.|++.....          .....++.+|..|.||||+|+..|+    .+++++|
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~----------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~L   83 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGD----------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHL   83 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccc----------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHH
Confidence            4567889999999999999999999997643100          0123367889999999999999999    5889999


Q ss_pred             HhcCCCCCcCCC-CCCChHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102          144 IKEDPAVPYSTN-GCGETPLYMAAERGFEKMLTEILE-NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS  217 (577)
Q Consensus       144 l~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~  217 (577)
                      ++.+++++ .++ ..|.||||+|+..++.+++++|++ .+++++..+..|.||||.|+.. ++.++++.|++.+..
T Consensus        84 l~~gadin-~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~-~~~~iv~~L~~~~~~  157 (169)
T PHA02741         84 IELGADIN-AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN-EDVAMMQILREIVAT  157 (169)
T ss_pred             HHcCCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC-CCHHHHHHHHHHHHH
Confidence            99998886 445 489999999999999999999997 5899999999999999999999 899999999886543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.6e-18  Score=154.16  Aligned_cols=141  Identities=12%  Similarity=0.093  Sum_probs=103.9

Q ss_pred             ccccccCCCCcHHHHHHHhCCHH----HHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHH---
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHAS----VVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDV---  139 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~---  139 (577)
                      ..+..+.++.+++|.||+.|+.+    ++++|++.+..                ++.+|..|.||||+|+..|+.+.   
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~----------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~   75 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL----------------LHRYDHHGRQCTHMVAWYDRANAVMK   75 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh----------------hhccCCCCCcHHHHHHHhCccCHHHH
Confidence            34456667778888888888874    44445444332                45678888888888888877543   


Q ss_pred             HHHHHhcCCCCCcCCC-CCCChHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102          140 VKILIKEDPAVPYSTN-GCGETPLYMAAERGFEKMLTEILE-NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS  217 (577)
Q Consensus       140 v~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~  217 (577)
                      +++|++.|.+++ .++ ..|.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+.. ++.+++++|++.+.+
T Consensus        76 i~~Ll~~Gadin-~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~-~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         76 IELLVNMGADIN-ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM-RDRRMMEILRANGAV  153 (166)
T ss_pred             HHHHHHcCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence            778888887776 344 578888888888888888888884 6888888888888888888888 788888888887766


Q ss_pred             ccccCCCCC
Q 008102          218 LIGETDRYG  226 (577)
Q Consensus       218 ~~~~~d~~g  226 (577)
                       .+.++..|
T Consensus       154 -~~~~~~~~  161 (166)
T PHA02743        154 -CDDPLSIG  161 (166)
T ss_pred             -CCCcccCC
Confidence             45555444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=4.7e-18  Score=162.72  Aligned_cols=157  Identities=12%  Similarity=0.144  Sum_probs=132.2

Q ss_pred             hccCCCCCCc-HhHHHHHcCCHHHHHHHHhcCCCCCcC---CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCC-CCCC
Q 008102          117 LGMTNDEKNT-ALHEAMQHRSLDVVKILIKEDPAVPYS---TNGCGETPLYMAAERGFEKMLTEILENCPSVAHE-GPSG  191 (577)
Q Consensus       117 l~~~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g  191 (577)
                      +..+|..|.| +||.|++.|+.++++.|+++|++++..   .+..|.||||+|+..|+.+++++|+++|++++.. +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4557777766 567777889999999999999988743   2468999999999999999999999999999986 5689


Q ss_pred             CCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhc
Q 008102          192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ  271 (577)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~  271 (577)
                      .||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|+..++.+++..+...+.       +..+.+|.+.+   
T Consensus       105 ~TpLh~Aa~~-~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---  172 (300)
T PHA02884        105 ITPLYISVLH-GCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDNEI-------SNFYKHPKKIL---  172 (300)
T ss_pred             CCHHHHHHHc-CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCCcc-------cccccChhhhh---
Confidence            9999999999 999999999999988 78899999999999999999888766654321       22567788865   


Q ss_pred             CcHHHHHHHHhhCC
Q 008102          272 GKLRVVEEIISYCP  285 (577)
Q Consensus       272 g~~~iv~~Ll~~~~  285 (577)
                      ++.++++.|+.+..
T Consensus       173 ~n~ei~~~Lish~v  186 (300)
T PHA02884        173 INFDILKILVSHFI  186 (300)
T ss_pred             ccHHHHHHHHHHHH
Confidence            46889998888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=1.3e-18  Score=153.52  Aligned_cols=139  Identities=15%  Similarity=0.124  Sum_probs=109.3

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCH---HHHHHH
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL---DVVKIL  143 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~---~~v~~L  143 (577)
                      ..+.+|.+|.||||+|++.|+.  ++.+...+.....         ....+..+|.+|.||||+|+..|+.   ++++.|
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~---------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~L   77 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE---------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLL   77 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch---------hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHH
Confidence            3466788999999999999983  3444433322110         2234556789999999999999986   468889


Q ss_pred             HhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102          144 IKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS  217 (577)
Q Consensus       144 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~  217 (577)
                      ++.|.+++...+..|.||||+|+..|+.+++++|+++ +++++..+..|.||||+|+.. ++.+++++|++.+.+
T Consensus        78 l~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~-~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         78 MEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACER-HDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence            9999887643345899999999999999999999974 888888899999999999988 889999998887754

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=7.6e-18  Score=172.67  Aligned_cols=188  Identities=22%  Similarity=0.269  Sum_probs=131.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhC---------CCCCCCCCCCCCHHHHHHHc--CCCHHHHHHHHhhCCCccccC----CC
Q 008102          160 TPLYMAAERGFEKMLTEILENC---------PSVAHEGPSGKTALHAAAVN--INSIDVVKLLLDKKKSLIGET----DR  224 (577)
Q Consensus       160 tpL~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~g~t~L~~A~~~--~~~~~~~~~Ll~~~~~~~~~~----d~  224 (577)
                      .++..+...+..+....+...+         .+.+.++..|+|.||.|..+  .++.++++.|++..+.+++..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4555555555555555444433         34455667788888888773  244577778877766654432    34


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHhcCCCCccchhc---------------------CCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          225 YGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD---------------------NDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       225 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~---------------------~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      .|.||||.|+.+.+.++|++|++.|+|+.....                     -+.|..||..||..++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            688888888888888888888888877642211                     12466788888888888888888888


Q ss_pred             CCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccccc--ccCCCCCCCcHHHHHHHhCCccceeccc
Q 008102          284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL--INDKDKEGNTPLHLLAALCRDSFHRIVP  352 (577)
Q Consensus       284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--~n~~d~~G~TpLh~A~~~~~~~~~~~lL  352 (577)
                      ++| ++.+|.+|+|+||..+.....++.+++++.    |+.  ...+|++|-|||.+|++.|+.+....+|
T Consensus       263 gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~----ga~~l~~v~N~qgLTPLtLAaklGk~emf~~il  328 (782)
T KOG3676|consen  263 GAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALEL----GANALEHVRNNQGLTPLTLAAKLGKKEMFQHIL  328 (782)
T ss_pred             CCC-CCccccCCChHHHHHHHHHHHHHHHHHHhc----CCCccccccccCCCChHHHHHHhhhHHHHHHHH
Confidence            887 788888888888888888778888888877    555  7778888888888888888655554444

>PHA02741 hypothetical protein; Provisional

Probab=99.78  E-value=2.7e-18  Score=153.59  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=112.4

Q ss_pred             HhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc------CCCCCcCCCCCCChHHHHHHHhCC----HHHHHHHHHhCCCC
Q 008102          115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKE------DPAVPYSTNGCGETPLYMAAERGF----EKMLTEILENCPSV  184 (577)
Q Consensus       115 ~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~  184 (577)
                      .+++.+|..|.||||+|++.|+.++++.|+..      +.++ ..+|..|.||||+|+..|+    .+++++|++.|+++
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            34566888999999999999999999988643      2343 4678889999999999998    58889999999999


Q ss_pred             CCCCC-CCCCHHHHHHHcCCCHHHHHHHHhh-CCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102          185 AHEGP-SGKTALHAAAVNINSIDVVKLLLDK-KKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       185 ~~~~~-~g~t~L~~A~~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  251 (577)
                      +.++. .|.||||+|+.. ++.+++++|+.. +.+ ++..|..|+||||.|+..++.++++.|++.+..
T Consensus        91 n~~~~~~g~TpLh~A~~~-~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHR-RDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCcCCCCCHHHHHHHc-CCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            98875 899999999999 999999999974 554 678888999999999999999999998886543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=154.57  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=77.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCCH----HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHH---HHHHhcCCCCccc
Q 008102          182 PSVAHEGPSGKTALHAAAVNINSI----DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII---AELLLNSDKSLAY  254 (577)
Q Consensus       182 ~~~~~~~~~g~t~L~~A~~~~~~~----~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~---v~~Ll~~~~~~~~  254 (577)
                      ++++..+.++.+++|.|++. ++.    +++++|.+.+.. .+..|..|+||||+|+..|+.+.   +++|++.|++++.
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         11 LGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             hHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            44444555566666666666 554    333344444443 45556666666666666555332   5566665555532


Q ss_pred             hhcCCCCCcchhHhhhcCcHHHHHHHHh-hCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCC
Q 008102          255 IVDNDRKMTALHLAAGQGKLRVVEEIIS-YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEG  332 (577)
Q Consensus       255 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G  332 (577)
                       .+...|.||||+|+..|+.+++++|+. .+.+ ++.+|..|+||||+|+..++.+++++|+++    ++++|.++..|
T Consensus        89 -~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~----ga~~~~~~~~~  161 (166)
T PHA02743         89 -RELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRAN----GAVCDDPLSIG  161 (166)
T ss_pred             -CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCCCcccCC
Confidence             111245566666666666666665553 3444 445555566666666666666666666655    55555555554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=5.7e-18  Score=162.14  Aligned_cols=161  Identities=17%  Similarity=0.168  Sum_probs=132.0

Q ss_pred             cccccCCCCc-HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           68 LQSVNAKGDA-PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        68 ~~~~~~~g~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      +..+|..|.| +||.|+..|+.+++++|++.|++.+..            ....+..|.||||+|++.|+.++++.|+++
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~------------~~~sd~~g~TpLh~Aa~~~~~eivklLL~~   92 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAP------------FPLSENSKTNPLIYAIDCDNDDAAKLLIRY   92 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCcccc------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4567777766 466777779999999999999874210            001256899999999999999999999999


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCC
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYG  226 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g  226 (577)
                      |++++...+..|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+.. ++.+++..+..      ...+..+
T Consensus        93 GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~-~~~~~~~~~~~------~~~~~~~  165 (300)
T PHA02884         93 GADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMI-CNNFLAFMICD------NEISNFY  165 (300)
T ss_pred             CCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh-CChhHHHHhcC------Ccccccc
Confidence            9998854567899999999999999999999999999999999999999999998 77777755542      2246677


Q ss_pred             CcHHHHHHhcCcHHHHHHHhcCCC
Q 008102          227 WTPLHYASYFDRNIIAELLLNSDK  250 (577)
Q Consensus       227 ~tpL~~A~~~g~~~~v~~Ll~~~~  250 (577)
                      .+|++.+   ++.++++.|+.+..
T Consensus       166 ~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        166 KHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             cChhhhh---ccHHHHHHHHHHHH
Confidence            8898875   46889999988764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=8.6e-19  Score=145.63  Aligned_cols=140  Identities=24%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             HHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCCh
Q 008102          229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA  308 (577)
Q Consensus       229 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~  308 (577)
                      .+.+|+..+....|+.|++..++..+..+. +++||||-|+.+|+.++++.|+..+++ .+.+...|+||||-||+.++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn-~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGAN-KEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCC-cccccccCccchhhhhcccch
Confidence            355677777778888887776665444444 788888888888888888888888888 788889999999999999999


Q ss_pred             hHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccc-eeccccCcccchhhhhhCCCChHHHHh
Q 008102          309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSF-HRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       309 ~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~-~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      +++-.|+++    |+++|++.+...||||+|+...+... ...||.+.++++..+|+.+.||+++|.
T Consensus       144 ~va~~LLqh----gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  144 EVAGRLLQH----GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             hHHHHHHhc----cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            999999999    99999999999999999998875444 346778999999999999999999998

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=2e-17  Score=137.60  Aligned_cols=144  Identities=24%  Similarity=0.220  Sum_probs=123.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC
Q 008102           78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC  157 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  157 (577)
                      .+.+|+..+....|+.|++..++               .++.+|.+|.||||-|+.+|+.+|++.|+..|++.. .+...
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an---------------~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~  129 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN---------------HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNE  129 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc---------------cccccccccccHHHHHHhcCchHHHHHHHHccCCcc-ccccc
Confidence            46788999999999999997554               378899999999999999999999999999998887 45556


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD  237 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g  237 (577)
                      |+||||-||..++.+++..|+++|+|++.......||||.|+...+....+.+|+......+...+..+.||+.+|-+.+
T Consensus       130 GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  130 GWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             CccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999999999999999999988556677788877666557777888899999987764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=6.6e-18  Score=148.94  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=107.8

Q ss_pred             HhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCC------CCCcCCCCCCChHHHHHHHhCCH---HHHHHHHHhCCCCC
Q 008102          115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP------AVPYSTNGCGETPLYMAAERGFE---KMLTEILENCPSVA  185 (577)
Q Consensus       115 ~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~------~~~~~~~~~g~tpL~~A~~~g~~---~~v~~Ll~~~~~~~  185 (577)
                      ...+.+|.+|.||||+|++.|+.+  +.+...+.      ......|..|.||||+|+..|+.   +++++|++.|++++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            345678899999999999999843  33322211      11234578899999999999886   46889999999999


Q ss_pred             CCC-CCCCCHHHHHHHcCCCHHHHHHHHhh-CCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCc
Q 008102          186 HEG-PSGKTALHAAAVNINSIDVVKLLLDK-KKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSL  252 (577)
Q Consensus       186 ~~~-~~g~t~L~~A~~~~~~~~~~~~Ll~~-~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~  252 (577)
                      .++ ..|.||||+|+.. ++.+++++|+.. +.+ ++..|..|.||||+|+..|+.+++++|++.+++.
T Consensus        86 ~~~~~~g~T~Lh~A~~~-~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         86 GKERVFGNTPLHIAVYT-QNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             ccCCCCCCcHHHHHHHh-CCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            887 4899999999999 999999999975 555 7888899999999999999999999999888654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=8.1e-19  Score=157.47  Aligned_cols=126  Identities=22%  Similarity=0.291  Sum_probs=108.3

Q ss_pred             CCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHH
Q 008102          258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLH  337 (577)
Q Consensus       258 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh  337 (577)
                      +..|.+|||+|++.|+..+++.|+..|+. ++..+....||||.|+.+|+.++|+.|+++    .+++|+.+..|+||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgar-vn~tnmgddtplhlaaahghrdivqkll~~----kadvnavnehgntplh  105 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGAR-VNSTNMGDDTPLHLAAAHGHRDIVQKLLSR----KADVNAVNEHGNTPLH  105 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcccc-cccccCCCCcchhhhhhcccHHHHHHHHHH----hcccchhhccCCCchh
Confidence            33789999999999999999999999988 777888888999999999999999999998    8999999999999999


Q ss_pred             HHHHhCCccceeccccCcccchhhhhhCCCChHHHHhcCCcchHHHHHHHHhhhc
Q 008102          338 LLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIG  392 (577)
Q Consensus       338 ~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~l~~~~~~~~  392 (577)
                      ||+..| +..+.+=|+..|+.+++.|+.|.||+|.|.   +.+.+.|+++.+..|
T Consensus       106 yacfwg-ydqiaedli~~ga~v~icnk~g~tpldkak---p~l~~~l~e~aek~g  156 (448)
T KOG0195|consen  106 YACFWG-YDQIAEDLISCGAAVNICNKKGMTPLDKAK---PMLKNTLLEIAEKHG  156 (448)
T ss_pred             hhhhhc-HHHHHHHHHhccceeeecccCCCCchhhhc---hHHHHHHHHHHHHhC
Confidence            999999 677777788999999999999999999886   344456666655533

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=8.3e-17  Score=165.15  Aligned_cols=198  Identities=21%  Similarity=0.274  Sum_probs=160.3

Q ss_pred             ccceeeeecCCccchHHHHHHHHHHhhC-----ccccccccCCCCcHHHHHHHh---CCHHHHHHHHHHHHcCCchhhcc
Q 008102           37 TILHVNIISRDRETIVSTEFVEQILEMC-----PSLLQSVNAKGDAPLHVAAKC---GHASVVTALIEIAKKQPKELESG  108 (577)
Q Consensus        37 t~Lh~A~~~g~~~~~~~~~~ll~~~~~~-----~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~  108 (577)
                      .++..|...+.   .+..+-+.......     -..++.+..-|+|+||.|..+   ++.++++.|++...+.-++    
T Consensus       103 ~~~~~~~~~~~---l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind----  175 (782)
T KOG3676|consen  103 DALFIADSEGA---LSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLIND----  175 (782)
T ss_pred             hhhhhcccccc---HHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhh----
Confidence            56667777777   66666665532211     245667788899999999984   5679999999976542211    


Q ss_pred             ccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC-------C-C--------------CCCChHHHHHH
Q 008102          109 VESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-------T-N--------------GCGETPLYMAA  166 (577)
Q Consensus       109 ~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-------~-~--------------~~g~tpL~~A~  166 (577)
                             ........|.||||.|+.+.+.++|+.|++.|++++..       + |              ..|+.||..|+
T Consensus       176 -------~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAA  248 (782)
T KOG3676|consen  176 -------IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAA  248 (782)
T ss_pred             -------hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHH
Confidence                   12224557999999999999999999999999987531       1 1              14789999999


Q ss_pred             HhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC-ccccCCCCCCcHHHHHHhcCcHHHHHHH
Q 008102          167 ERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS-LIGETDRYGWTPLHYASYFDRNIIAELL  245 (577)
Q Consensus       167 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~-~~~~~d~~g~tpL~~A~~~g~~~~v~~L  245 (577)
                      ..++.|++++|+++|+|++.+|..|+|.||..+.. ...++.+++++.+.+ +...++..|.|||.+|++.|+.++.+.+
T Consensus       249 C~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~-~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  249 CTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIH-FVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             HcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHH-HHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999 889999999998876 4467889999999999999999999999


Q ss_pred             hcCC
Q 008102          246 LNSD  249 (577)
Q Consensus       246 l~~~  249 (577)
                      ++..
T Consensus       328 le~~  331 (782)
T KOG3676|consen  328 LERR  331 (782)
T ss_pred             HHhh
Confidence            9984

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.65  E-value=5.5e-16  Score=139.42  Aligned_cols=119  Identities=29%  Similarity=0.402  Sum_probs=103.4

Q ss_pred             CccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHH
Q 008102           64 CPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKIL  143 (577)
Q Consensus        64 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~L  143 (577)
                      ...+++.-|..|.+|||+||+.||..+|+.|+..|+.                ++..|....||||+|+..||-++|+.|
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgar----------------vn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR----------------VNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhcccc----------------cccccCCCCcchhhhhhcccHHHHHHH
Confidence            4556778888899999999999999999999998877                466777888999999999999999999


Q ss_pred             HhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          144 IKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       144 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      +++.++++ ..|+.|.|||||||-.|...+.+-|+..|+.++..++.|.|||..|-
T Consensus        87 l~~kadvn-avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LSRKADVN-AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHhcccc-hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            99888886 77888999999999999999999999999988888999999988763

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=4.5e-15  Score=117.59  Aligned_cols=88  Identities=33%  Similarity=0.464  Sum_probs=60.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCC
Q 008102           79 LHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCG  158 (577)
Q Consensus        79 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g  158 (577)
                      ||+|++.|+.+++++|++.+.+                   .+. |+||||+|+..|+.+++++|++++++++ .++..|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~-------------------~~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g   59 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD-------------------INL-GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNG   59 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST-------------------TTS-SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTS
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC-------------------CCC-CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCC
Confidence            5777777777777777775432                   111 6677777777777777777777776664 555667


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhCCCCCCC
Q 008102          159 ETPLYMAAERGFEKMLTEILENCPSVAHE  187 (577)
Q Consensus       159 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~  187 (577)
                      .||||+|+..|+.+++++|+++|++++.+
T Consensus        60 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   60 NTALHYAAENGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             SBHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            77777777777777777777777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.5e-14  Score=122.68  Aligned_cols=122  Identities=34%  Similarity=0.548  Sum_probs=67.1

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP  151 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  151 (577)
                      |.+|.||||+|+..|+.+++++|++.+..                ....+..|.||||.|+..++.++++.|++.++...
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~----------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~   67 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGAD----------------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN   67 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            34555666666666666666666555433                12345555566666666666666666665554332


Q ss_pred             cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHH
Q 008102          152 YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLL  211 (577)
Q Consensus       152 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~L  211 (577)
                       ..+..|.||+|+|+..++.+++++|++++.+.+..+..+.||++.|... ++.+++++|
T Consensus        68 -~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~L  125 (126)
T cd00204          68 -ARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN-GHLEVVKLL  125 (126)
T ss_pred             -ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc-CCHHHHHHh
Confidence             3344555566665555555555555555555555555555555555555 555555544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=2.6e-14  Score=121.14  Aligned_cols=124  Identities=35%  Similarity=0.528  Sum_probs=102.6

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      +|.+|.||||.|++.++.+++++|++.+... ...+..|.+|+|.|+..++.+++++|++.+++++..+..+.||+|.|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            4677889999999999999999999888765 366778889999999999889999999888877777888888888888


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHh
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL  246 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  246 (577)
                      .. ++.+++++|++.+.. .+..+..|.||++.|...++.+++++|+
T Consensus        82 ~~-~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          82 RN-GNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             Hc-CcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88 888888888887755 5667777888888888888888877764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=1.5e-14  Score=114.52  Aligned_cols=84  Identities=36%  Similarity=0.554  Sum_probs=68.8

Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHH
Q 008102          128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDV  207 (577)
Q Consensus       128 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  207 (577)
                      ||+|++.|+.+++++|++.+.++..     |.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.+ ++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAEN-GNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHT-THHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHc-CCHHH
Confidence            6888888888888888887766543     77888888888888888888888888888888888888888888 88888


Q ss_pred             HHHHHhhCCC
Q 008102          208 VKLLLDKKKS  217 (577)
Q Consensus       208 ~~~Ll~~~~~  217 (577)
                      +++|++.+.+
T Consensus        75 ~~~Ll~~g~~   84 (89)
T PF12796_consen   75 VKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHTTT-
T ss_pred             HHHHHHcCCC
Confidence            8888888766

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.37  E-value=3.8e-12  Score=94.67  Aligned_cols=103  Identities=20%  Similarity=0.253  Sum_probs=74.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      --+.+++++|..+-|+..+..|-+.                +.. ..|++|||+|+..|+.+++++|+..|+++. .+|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nV----------------n~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDK   65 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNV----------------NEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDK   65 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccH----------------HHH-hCCcccchHhhhcchHHHHHHHHHhccccC-Cccc
Confidence            3456777778888777777765331                111 257788888888888888888888887775 6777


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA  197 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  197 (577)
                      .|-|||.-|+..||.++|++|+++|++-....++|.+.+..
T Consensus        66 ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   66 YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            78888888888888888888888888777777777665543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.36  E-value=5.3e-12  Score=119.27  Aligned_cols=130  Identities=32%  Similarity=0.429  Sum_probs=88.8

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCC-----HHHHHHH
Q 008102           69 QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRS-----LDVVKIL  143 (577)
Q Consensus        69 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~-----~~~v~~L  143 (577)
                      ...+..+.+++|.++..+..+++++++..+.+                .+.+|.+|.||||+|+..++     .++++.|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~l  130 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGAD----------------VNAKDADGDTPLHLAALNGNPPEGNIEVAKLL  130 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCC----------------cccccCCCCcHHHHHHhcCCcccchHHHHHHH
Confidence            34455566777777777777777777666554                24567777777777777777     7777777


Q ss_pred             HhcCC--CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhC
Q 008102          144 IKEDP--AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK  215 (577)
Q Consensus       144 l~~~~--~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~  215 (577)
                      ++.+.  +.....|..|.||||+|+..|+.++++.|++.+++++..+..|.|+++.|+.. ++.++++.+++.+
T Consensus       131 l~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~l~~~~  203 (235)
T COG0666         131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKN-GRIELVKLLLDKG  203 (235)
T ss_pred             HHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhccc-chHHHHHHHHhcC
Confidence            77776  45556677777777777777777777777777777666666777777777766 6666666666643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.33  E-value=8.1e-11  Score=111.15  Aligned_cols=129  Identities=33%  Similarity=0.433  Sum_probs=100.9

Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCC-----HHHHHHHHhhCC--CccccCCCC
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS-----IDVVKLLLDKKK--SLIGETDRY  225 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~-----~~~~~~Ll~~~~--~~~~~~d~~  225 (577)
                      ..+..+.++++.++..+..+.+++++..+.+++.++..|.||||.|+.. ++     .++++.|++.+.  ......|..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            4555678888888888888888888888888888888888888888888 77     788888888887  556677888


Q ss_pred             CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhC
Q 008102          226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYC  284 (577)
Q Consensus       226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  284 (577)
                      |.||||+|+..|+.++++.|++.++++.  ..+..|.|+++.|+..++.++++.+++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8888888888888888888888877664  22446777777777777777777777754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.31  E-value=9.2e-12  Score=92.67  Aligned_cols=103  Identities=23%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      --+.+++++|..+-|+..+..+-+++...  .|++|||+|+..|+.+++.+|+..|++++.+|+.|-|||..|+.. |+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwE-GH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWE-GHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHH-hhH
Confidence            34678899999999999888886665433  589999999999999999999999999999999999999999998 999


Q ss_pred             HHHHHHHhhCCCccccCCCCCCcHHHH
Q 008102          206 DVVKLLLDKKKSLIGETDRYGWTPLHY  232 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~  232 (577)
                      +++++|++.+.+ -.....+|.+.+..
T Consensus        81 ~cVklLL~~GAd-rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   81 DCVKLLLQNGAD-RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHcCcc-cceeCCCchhHHhh
Confidence            999999998887 45555566555543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.30  E-value=1.6e-12  Score=92.00  Aligned_cols=56  Identities=32%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             HHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHH
Q 008102          280 IISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLL  339 (577)
Q Consensus       280 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A  339 (577)
                      |+++++..++..|..|+||||+|+.+|+.+++++|++.    +++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC----T--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC----cCCCCCCcCCCCCHHHhC
Confidence            45556455677777777888888887778888777766    777777777778887776

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.22  E-value=1.1e-10  Score=105.53  Aligned_cols=123  Identities=20%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      -..||.-+...|..+-...|+....                .++..|..|-|+|..|+..|+.++++.|++.|++++..+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr----------------~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~q   75 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVR----------------QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQ   75 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhh----------------hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccc
Confidence            3578888889999999999988533                267889999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK  214 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~  214 (577)
                      ...+.||||.|+.+|+.++.+.|++.|+.+...+.-|+|+-..|+.. |+.+++..+-+.
T Consensus        76 hg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFV-G~H~CV~iINN~  134 (396)
T KOG1710|consen   76 HGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFV-GHHECVAIINNH  134 (396)
T ss_pred             ccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHh-cchHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999 998888876543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.22  E-value=4.1e-11  Score=129.75  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=85.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC
Q 008102           78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC  157 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  157 (577)
                      .|+.|+..|+.+.++.|++.|++                ++.+|..|.||||+|+..|+.+++++|++.|++++ ..|..
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad----------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~  147 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD----------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKD  147 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCC
Confidence            47888999999999999987765                45678889999999999999999999999988875 67888


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHh-------CCCCCCCCCCCCCHHHHH
Q 008102          158 GETPLYMAAERGFEKMLTEILEN-------CPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~-------~~~~~~~~~~g~t~L~~A  198 (577)
                      |.||||+|+..|+.+++++|+++       +++.+..+..|.+|+..+
T Consensus       148 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        148 GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            99999999999999999999988       666666666666665444

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.19  E-value=5.2e-11  Score=83.87  Aligned_cols=54  Identities=30%  Similarity=0.454  Sum_probs=32.3

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHH
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL  178 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  178 (577)
                      |.||||+|++.|+.+++++|++++.+++ .+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4567777777777777777776666654 34666777777777777777766664

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=3.1e-11  Score=117.64  Aligned_cols=121  Identities=26%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC
Q 008102           78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC  157 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~  157 (577)
                      .|.-|+..|-.++|+..+.+..++                ...|.+|-|+||-|+..||.+||++|++.|.+++ ..|.+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~Dp----------------SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSd  615 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDP----------------SQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSD  615 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCC----------------CCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCC
Confidence            355688899999999998876553                4578899999999999999999999999999987 78999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCCCC-CCCCCCHHHHHHHc-CCCHHHHHHHHhhC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSVAHE-GPSGKTALHAAAVN-INSIDVVKLLLDKK  215 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~-~~~~~~~~~Ll~~~  215 (577)
                      |+||||+|+.+++..+++.|++.|+.+... -.++.|+...+-.. .|..++.++|..-.
T Consensus       616 GWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  616 GWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             CCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999766542 34567776554321 26778888887643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.18  E-value=3.1e-10  Score=122.98  Aligned_cols=105  Identities=22%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      +.|+.|+..|+.+.++.|++.|++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.. ++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~-g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN-GFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-CcH
Confidence            35889999999999999999998876 6788999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHhh-------CCCccccCCCCCCcHHHHH
Q 008102          206 DVVKLLLDK-------KKSLIGETDRYGWTPLHYA  233 (577)
Q Consensus       206 ~~~~~Ll~~-------~~~~~~~~d~~g~tpL~~A  233 (577)
                      +++++|+++       +.+ .+..+..|.+|+...
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~-~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGAN-AKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCC-CCccccCCCCccchh
Confidence            999999988       444 455566676665544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.1e-10  Score=113.82  Aligned_cols=119  Identities=23%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHH
Q 008102          128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDV  207 (577)
Q Consensus       128 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  207 (577)
                      |.-|+..|.+++|+..+.+-.+. ...|..|-|+||-|+..||.+||++|++.|+++|..|.+|+||||+|+.. ++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASC-Nnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASC-NNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhc-CchHH
Confidence            34577788888888888765444 46777888888888888888888888888888888888888888888888 88888


Q ss_pred             HHHHHhhCCCccccCCCCCCcHHHHHH--hcCcHHHHHHHhcC
Q 008102          208 VKLLLDKKKSLIGETDRYGWTPLHYAS--YFDRNIIAELLLNS  248 (577)
Q Consensus       208 ~~~Ll~~~~~~~~~~d~~g~tpL~~A~--~~g~~~~v~~Ll~~  248 (577)
                      ++.|++.|..+....-.++.|+...+-  +.|..++.++|...
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            888888888766666677777776653  34667777777664

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.17  E-value=3.5e-11  Score=85.13  Aligned_cols=56  Identities=30%  Similarity=0.446  Sum_probs=26.6

Q ss_pred             HHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          143 LIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       143 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      |+++++......|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555444456777777777777777777777777777777777777777777765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.16  E-value=9.1e-11  Score=82.62  Aligned_cols=54  Identities=41%  Similarity=0.600  Sum_probs=38.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLL  212 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll  212 (577)
                      |.||||+|++.|+.+++++|+++|.+++.+|.+|.||||+|+.. |+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~-g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKN-GNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHT-T-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-cCHHHHHHHC
Confidence            56788888888888888888888888887788888888888887 7888887764

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.10  E-value=6e-10  Score=100.97  Aligned_cols=122  Identities=22%  Similarity=0.242  Sum_probs=79.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHHcC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH-EGPSGKTALHAAAVNI  202 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~  202 (577)
                      -..||..++..|+.+-...|++.-..++ ..|..|.|||..|+..|+.++++.|++.|+|+|. .+..+.||||+|+.+ 
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn-~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS-   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVN-QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS-   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhh-ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc-
Confidence            3456777777777766666666533333 5666677777777777777777777777766664 334566677777776 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS  248 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  248 (577)
                      |+.++++.|++.|.. ....+.-|+|+-..|+.-|+.++|..+-.+
T Consensus        90 Gn~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            667777777766665 455666666777777776766666665443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=3.6e-09  Score=108.79  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCC-CCCcHHHHHHHhCCccceeccccCccc
Q 008102          279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDK-EGNTPLHLLAALCRDSFHRIVPWNVGG  357 (577)
Q Consensus       279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~-~G~TpLh~A~~~~~~~~~~~lL~~~g~  357 (577)
                      ++-+.|....+.+|..|+|+||+++..++.+++++|+++    |++++.+|. .|.||||.|...| ..++..+|+.+|+
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh----Gidv~vqD~ESG~taLHRaiyyG-~idca~lLL~~g~  110 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH----GIDVFVQDEESGYTALHRAIYYG-NIDCASLLLSKGR  110 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc----CceeeeccccccchHhhHhhhhc-hHHHHHHHHhcCC
Confidence            334444555566666666666666666666666666666    666666664 3666666666666 4555566666666


Q ss_pred             chhhhhhCCCChHHHHh
Q 008102          358 DYQAVNKQNISVKHITR  374 (577)
Q Consensus       358 d~~~~n~~G~t~l~~a~  374 (577)
                      .+.++|++|.+|++...
T Consensus       111 SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             ceEEecccCCCHHHHHh
Confidence            66666666666666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.63  E-value=2.9e-08  Score=97.94  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=99.3

Q ss_pred             hhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCC
Q 008102          265 LHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCR  344 (577)
Q Consensus       265 L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~  344 (577)
                      +..|+..++.--+++...+|.+ .-.++....+.||+|+..|+.++|+|++++.|  ...+++.|..|.|+||-|+..+ 
T Consensus       870 il~av~~~D~~klqE~h~~gg~-ll~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~-  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS-LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQR-  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc-eEeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhc-
Confidence            3445556655555666666766 56678888999999999999999999999965  5678889999999999999888 


Q ss_pred             ccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          345 DSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       345 ~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      +..++.+|.+.|+.+...|..|.||.+-|. -+.+++..+|..
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            788999999999999999999999999998 777888777664

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.56  E-value=3.3e-07  Score=89.38  Aligned_cols=96  Identities=20%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             ccCCCCCCcH------hHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 008102          118 GMTNDEKNTA------LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG  191 (577)
Q Consensus       118 ~~~~~~g~t~------Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  191 (577)
                      ..+|.+|.|+      ||.+++.|+.+..-.|+..|++.++.-.+.|.||||.|++.|+..-++.|.-+|+|+...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            4566776665      9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHcCCCHHHHHHHHhh
Q 008102          192 KTALHAAAVNINSIDVVKLLLDK  214 (577)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~~Ll~~  214 (577)
                      .||+.+|-.. |+-++.+.|++.
T Consensus       201 mtP~~~AR~~-gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQG-GHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhc-CchHHHHHHHHH
Confidence            9999999888 998888887764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.55  E-value=4.6e-08  Score=100.88  Aligned_cols=88  Identities=18%  Similarity=0.158  Sum_probs=82.1

Q ss_pred             HHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCC
Q 008102          114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT  193 (577)
Q Consensus       114 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t  193 (577)
                      ....+.+|..|+|+||.|+..+..+++++|+++|.++.....+.|.||||.|+..|+.+++..|+.+|.+....|++|.+
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegls  121 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLS  121 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCC
Confidence            34568899999999999999999999999999999998777788999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 008102          194 ALHAAAVN  201 (577)
Q Consensus       194 ~L~~A~~~  201 (577)
                      ||...++.
T Consensus       122 plq~~~r~  129 (1267)
T KOG0783|consen  122 PLQFLSRV  129 (1267)
T ss_pred             HHHHHhhc
Confidence            99998873

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.51  E-value=1.3e-07  Score=92.19  Aligned_cols=83  Identities=23%  Similarity=0.225  Sum_probs=66.3

Q ss_pred             hhHHHhcCChhHHHHHHhccccccccccCCC-CCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cC
Q 008102          299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKD-KEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YG  376 (577)
Q Consensus       299 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d-~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~  376 (577)
                      ||..++.++.+..--|+..    |++.|..+ ..|+||||.|++.| +....++|.-+|+|+++.|.+|.||+++|. .|
T Consensus       137 LhasvRt~nlet~LRll~l----GA~~N~~hpekg~TpLHvAAk~G-q~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~g  211 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL----GAQANFFHPEKGNTPLHVAAKAG-QILQAELLAVYGADPGAQDSSGMTPVDYARQGG  211 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc----ccccCCCCcccCCchhHHHHhcc-chhhhhHHhhccCCCCCCCCCCCcHHHHHHhcC
Confidence            7888888888876666666    88888877 45889999999888 566677888889999999999999999988 67


Q ss_pred             CcchHHHHHH
Q 008102          377 FPQLEQEIRE  386 (577)
Q Consensus       377 ~~~~~~~l~~  386 (577)
                      |.++.+.|.+
T Consensus       212 H~~laeRl~e  221 (669)
T KOG0818|consen  212 HHELAERLVE  221 (669)
T ss_pred             chHHHHHHHH
Confidence            7777666555

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.50  E-value=1.7e-07  Score=92.69  Aligned_cols=123  Identities=17%  Similarity=0.207  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            3 MDPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      +.+++..|+..+|.-.++.....|.+. ....+..+.||+|+..|+   -++|++++++  .-+++++..+..|+|+||-
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~---~eivkyildh--~p~elld~~de~get~lhk  940 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGN---GEIVKYILDH--GPSELLDMADETGETALHK  940 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCC---hHHHHHHHhc--CCHHHHHHHhhhhhHHHHH
Confidence            456789999999988888877777666 445578899999999999   9999999774  2235678899999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      |+..++..+.++|++.|+.                +...|..|.||-.-|-+.|+.+...+|-.+
T Consensus       941 aa~~~~r~vc~~lvdagas----------------l~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  941 AACQRNRAVCQLLVDAGAS----------------LRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHhcchHHHHHHHhcchh----------------heecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999998877                677899999999999999999999888654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.40  E-value=4.4e-07  Score=54.43  Aligned_cols=27  Identities=37%  Similarity=0.556  Sum_probs=13.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSV  184 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~  184 (577)
                      |+||||+|++.|+.+++++|+++|+|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.38  E-value=4.4e-07  Score=54.42  Aligned_cols=29  Identities=31%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102          123 EKNTALHEAMQHRSLDVVKILIKEDPAVP  151 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  151 (577)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            58999999999999999999999998764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.36  E-value=4.7e-07  Score=87.99  Aligned_cols=93  Identities=28%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          156 GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       156 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      .++..++++|++.|+...++.+.-.|.|.+.+|.+.+|+||.|+.. |+.+++++|++.....++.+|..|+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            3467789999999999999999999999999999999999999999 999999999999888899999999999999999


Q ss_pred             cCcHHHHHHHhcCC
Q 008102          236 FDRNIIAELLLNSD  249 (577)
Q Consensus       236 ~g~~~~v~~Ll~~~  249 (577)
                      .++.+++++|-+..
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998854

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.31  E-value=9.4e-07  Score=85.96  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHH
Q 008102            6 LLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAK   84 (577)
Q Consensus         6 ~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~   84 (577)
                      .+++|++.||+..++.+.-.+.+. ..+.+.+|+||+|+.-|+   ++++++|++.   ++...+.+|..|+|||.-|..
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~---v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGH---VEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCc---eeHHHHHHHH---HcCCCChhhccCCCcchHhHh
Confidence            478999999999999999888888 666688999999999999   9999999664   777788999999999999999


Q ss_pred             hCCHHHHHHHHHHH
Q 008102           85 CGHASVVTALIEIA   98 (577)
Q Consensus        85 ~g~~~iv~~Ll~~~   98 (577)
                      .+|.+++++|-+..
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999987754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.27  E-value=1.3e-06  Score=54.01  Aligned_cols=31  Identities=29%  Similarity=0.528  Sum_probs=17.3

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSVAHEG  188 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  188 (577)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4555555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.20  E-value=1.6e-06  Score=53.69  Aligned_cols=31  Identities=32%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CCchhhHHHhcCChhHHHHHHhccccccccccCCC
Q 008102          295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKD  329 (577)
Q Consensus       295 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d  329 (577)
                      |+||||+|+.+++.+++++|+++    |++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~----ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH----GADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT----TSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC----cCCCCCCC
Confidence            56666666666666666666665    66666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.19  E-value=2.7e-06  Score=84.35  Aligned_cols=90  Identities=21%  Similarity=0.351  Sum_probs=76.2

Q ss_pred             ccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHh
Q 008102           37 TILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQM  116 (577)
Q Consensus        37 t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  116 (577)
                      -|+|.++...+   .+-....+. .+ ....++.+|..|.||||+|+..|+.+.++.|+..+++                
T Consensus        22 ~~lh~~~~~~~---~~sl~~el~-~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----------------   80 (560)
T KOG0522|consen   22 KPLHWAVVTTD---SDSLEQELL-AK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----------------   80 (560)
T ss_pred             cccchhhhccc---hhhHHHHHh-hh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----------------
Confidence            45999999888   766666544 22 4567788999999999999999999999999998876                


Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKED  147 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  147 (577)
                      ...+|++|++|||.|+..|+.+++..++.+.
T Consensus        81 v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   81 VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            4679999999999999999999999888764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.12  E-value=7.3e-06  Score=81.80  Aligned_cols=88  Identities=23%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             hHHHHHcCCHHHHHHHHhcCCCC---CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCC
Q 008102          128 LHEAMQHRSLDVVKILIKEDPAV---PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS  204 (577)
Q Consensus       128 Lh~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  204 (577)
                      |.-|+...+...+-.|+.+|...   ....+.+|.|+||+|++.|+..+.++|+=+|.|+..+|..|+|+|.+|-.. +.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a-~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA-GS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc-cc
Confidence            45566666666666666665422   233455567777777777777777777777777777777777777777666 77


Q ss_pred             HHHHHHHHhhCC
Q 008102          205 IDVVKLLLDKKK  216 (577)
Q Consensus       205 ~~~~~~Ll~~~~  216 (577)
                      .+++..|++.+.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            777777776654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.04  E-value=1.9e-05  Score=83.16  Aligned_cols=127  Identities=16%  Similarity=0.159  Sum_probs=92.3

Q ss_pred             HHHHHHHHcCCcHHHHHhhhhcC------CccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcH
Q 008102            5 PLLYEAAAKGEIEPFKEISNVLG------RVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAP   78 (577)
Q Consensus         5 ~~L~~Aa~~g~~~~v~~Ll~~~~------~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~   78 (577)
                      .....|+..||...|++.++...      ++.++ -|+++|+.|+.+.+   .++.++|++.    +..      . ..+
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nen---le~~eLLl~~----~~~------~-gdA   91 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNEN---LELQELLLDT----SSE------E-GDA   91 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccCh-Hhhhceeccccccc---HHHHHHHhcC----ccc------c-chH
Confidence            45788999999999999998532      22444 89999999999999   9999999772    111      1 457


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102           79 LHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY  152 (577)
Q Consensus        79 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  152 (577)
                      |.+|+..|..+.|+.++.+....+..-...      ..-...-..+-|||.+||..+|.||++.|+.+|..++.
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~------d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSG------DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhcccc------ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            889999999999999999743322100000      00011223467899999999999999999988877653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.03  E-value=1.2e-05  Score=84.58  Aligned_cols=124  Identities=16%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             ccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHh
Q 008102           37 TILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQM  116 (577)
Q Consensus        37 t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~  116 (577)
                      .-.-.|+.+|+   .-.|+..++......-++|..|.-|.++|++|..+.+.|++++|++....                
T Consensus        27 ~~fL~a~E~gd---~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~----------------   87 (822)
T KOG3609|consen   27 KGFLLAHENGD---VPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE----------------   87 (822)
T ss_pred             HHHHHHHHcCC---hHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc----------------
Confidence            34456778888   88888887744433345677888888888888888888888888874211                


Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC---------CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV---------PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH  186 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~  186 (577)
                            . ..+|.+|+..|..+.|+.++.+....         +...-..+.|||.+||..++.|+++.|+++|+.+..
T Consensus        88 ------~-gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   88 ------E-GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ------c-chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                  1 35788888888888888888763221         112223467888888888888888888888866543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.94  E-value=1.9e-05  Score=78.49  Aligned_cols=90  Identities=21%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             cHhHHHHHcCCHHHHHHHHhc-CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCC
Q 008102          126 TALHEAMQHRSLDVVKILIKE-DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS  204 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  204 (577)
                      -|+|.++...+.+-+...+.. -.......|..|.||||+|+..|+.+.++.|+..++++..++..|++|||-|+.. |+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~-g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST-GN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc-CC
Confidence            358888888776666554433 2333346777788999999999999999999988888888888889999988888 88


Q ss_pred             HHHHHHHHhhCC
Q 008102          205 IDVVKLLLDKKK  216 (577)
Q Consensus       205 ~~~~~~Ll~~~~  216 (577)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            877777776544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.82  E-value=5.2e-05  Score=75.89  Aligned_cols=92  Identities=22%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhCCCC----CCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          160 TPLYMAAERGFEKMLTEILENCPSV----AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       160 tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      .-|..|+...+...+-.|+.+|...    ..-+.+|+|+||+||.. |+..+.++|+=.+.+ ...+|..|+|+|.+|-+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWyg~d-v~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK-GNVVLAQLLIWYGVD-VMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh-cchhHHHHHHHhCcc-ceecccCCchhhhhHhh
Confidence            4577788888888899999998432    34566789999999999 999999999966666 78999999999999999


Q ss_pred             cCcHHHHHHHhcCCCCcc
Q 008102          236 FDRNIIAELLLNSDKSLA  253 (577)
Q Consensus       236 ~g~~~~v~~Ll~~~~~~~  253 (577)
                      .|..+++..|+++|....
T Consensus       704 a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cccHHHHHHHHHcCCCcc
Confidence            999999999999987654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.77  E-value=0.00012  Score=69.78  Aligned_cols=73  Identities=25%  Similarity=0.342  Sum_probs=60.9

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       125 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      .--|.+|++.|+.+.|++|++.|.+++ ..|....+||++|+..||.+++++|+++|+--....-+|..++.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            345899999999999999999988886 7899999999999999999999999999965544444566554433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.72  E-value=2e-05  Score=85.42  Aligned_cols=76  Identities=26%  Similarity=0.279  Sum_probs=70.7

Q ss_pred             CCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHH
Q 008102          294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHIT  373 (577)
Q Consensus       294 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a  373 (577)
                      .|.++||.|+..+.....+.|+++    |+++|..|..|+||||.+...| ......+++++|+++++.+.+|++|+++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~----ga~vn~~d~~g~~plh~~~~~g-~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN----GADVNALDSKGRTPLHHATASG-HTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc----CCcchhhhccCCCcchhhhhhc-ccchhhhhccccccccccCccCcchhhHH
Confidence            568999999999999999999999    9999999999999999999999 56666777789999999999999999999


Q ss_pred             h
Q 008102          374 R  374 (577)
Q Consensus       374 ~  374 (577)
                      .
T Consensus       730 ~  730 (785)
T KOG0521|consen  730 M  730 (785)
T ss_pred             h
Confidence            7

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.54  E-value=0.00017  Score=62.25  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG  188 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  188 (577)
                      ++.+|..|+|||+.|+..|+.+.+.+|+++|.......|..|.+.+.+|-+.|..+.++.|.++..+-...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            677888999999999999999999999999865556788889999999999999999988888765544433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.52  E-value=6.4e-05  Score=81.63  Aligned_cols=79  Identities=27%  Similarity=0.307  Sum_probs=75.7

Q ss_pred             CCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHH
Q 008102          260 RKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLL  339 (577)
Q Consensus       260 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A  339 (577)
                      .|.++||.|+..|..-..++|++++.+ ++.+|..|++|+|.+...|+...+..++++    +++.++.|.+|.+||++|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~----~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKR----GADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccc----cccccccCccCcchhhHH
Confidence            578999999999999999999999999 899999999999999999999999999998    999999999999999999


Q ss_pred             HHhC
Q 008102          340 AALC  343 (577)
Q Consensus       340 ~~~~  343 (577)
                      ....
T Consensus       730 ~~~~  733 (785)
T KOG0521|consen  730 MEAA  733 (785)
T ss_pred             hhhc
Confidence            8774

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.52  E-value=0.00019  Score=61.92  Aligned_cols=70  Identities=21%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHH
Q 008102           65 PSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILI  144 (577)
Q Consensus        65 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll  144 (577)
                      +..++.+|..|+|+|++|+..|+.+.+.+|+.+|...               +...|..|.+++.+|-+.|..++++.|-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---------------vgv~d~ssldaaqlaek~g~~~fvh~lf   66 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---------------VGVTDESSLDAAQLAEKGGAQAFVHSLF   66 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc---------------ccccccccchHHHHHHhcChHHHHHHHH
Confidence            3467899999999999999999999999999998432               4678999999999999999999999999


Q ss_pred             hcCCC
Q 008102          145 KEDPA  149 (577)
Q Consensus       145 ~~~~~  149 (577)
                      +...+
T Consensus        67 e~~~e   71 (223)
T KOG2384|consen   67 ENDRE   71 (223)
T ss_pred             HHhcc
Confidence            87544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.51  E-value=0.00013  Score=78.89  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=101.4

Q ss_pred             cCCCCCCChHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          152 YSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       152 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      ...+..|.+.+|+++..++.-.++.+++- +......|.+|...+|+++.  +..+..-+++.....-++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~--lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA--LGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh--cCCceeEEEEeecccccccccCCCCccc
Confidence            35566789999999999999999999986 66666677888888888544  5677777777666666899999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCccchhc----CCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          231 HYASYFDRNIIAELLLNSDKSLAYIVD----NDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      |+|+..|+..++..|.+.+++.....+    ...|.|+-..|-.+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999987766543322    23577777888888887776666554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.42  E-value=0.00017  Score=77.84  Aligned_cols=130  Identities=26%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHH-HHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK  145 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  145 (577)
                      .....+..|.|.+|+++..+....++.+++. +..                -...|.+|...+|+ |..++.+..-+++.
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~----------------~~eld~d~qgV~hf-ca~lg~ewA~ll~~  628 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG----------------DLELDRDGQGVIHF-CAALGYEWAFLPIS  628 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC----------------chhhcccCCChhhH-hhhcCCceeEEEEe
Confidence            3455677899999999999999999999886 322                12356677777888 45567777777776


Q ss_pred             cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 008102          146 EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA------HEGPSGKTALHAAAVNINSIDVVKLLLDK  214 (577)
Q Consensus       146 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~  214 (577)
                      -...-...+|..|+||||+|+.+|+..++..|++.|++..      ...+.|.|+-..|..+ |+..+..+|-+.
T Consensus       629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~-g~~gia~~lse~  702 (975)
T KOG0520|consen  629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARAN-GHKGIAGYLSEK  702 (975)
T ss_pred             ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcc-cccchHHHHhhh
Confidence            5554445899999999999999999999999998885543      3455688888888877 777777776554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.07  E-value=0.0016  Score=62.29  Aligned_cols=74  Identities=23%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       159 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      .--|..||+.|+.+.++.|++.|.++|..|....+||.+|+.. |+.+++++|+++|+.  ..+|...----|+++.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGAi--C~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGAI--CSRDTFDGDRCHYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCCc--ccccccCcchhhhhhh
Confidence            3458899999999999999999999999999999999999999 999999999999985  4444433233344444

>smart00248 ANK ankyrin repeats

Probab=95.84  E-value=0.015  Score=33.55  Aligned_cols=25  Identities=36%  Similarity=0.562  Sum_probs=14.7

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDP  148 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~  148 (577)
                      |.||+|+|+..++.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.66  E-value=0.021  Score=32.87  Aligned_cols=27  Identities=33%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCC
Q 008102          158 GETPLYMAAERGFEKMLTEILENCPSV  184 (577)
Q Consensus       158 g~tpL~~A~~~g~~~~v~~Ll~~~~~~  184 (577)
                      |.||+|+|+..++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            678888888888888888888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.64  E-value=0.034  Score=55.55  Aligned_cols=41  Identities=29%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             CchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHH
Q 008102          296 WNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA  340 (577)
Q Consensus       296 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~  340 (577)
                      -|+||+|+..|..+++.++++.    ++|+..+|..|.||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Lee----g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEE----GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHh----cCCchhcccCCCCcccccc
Confidence            3444444444444444444444    4444444444444444443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.60  E-value=0.049  Score=54.49  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=19.8

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       159 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      .|+||+|+..|..+++.+++++|+|+...|..|+||...+
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls  470 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLS  470 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccc
Confidence            3445555555555555555555555444444455554443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.29  E-value=0.24  Score=43.31  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      .-|..|++.+-..+++..-+.....    -...++....||+..+.|+|+|+-++-.-     .+-.+.+..|... .+.
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-----~~~~~iFdIA~~~-kDl  117 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-----YNPEDIFDIAFAK-KDL  117 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-----CCchhhhhhhhhc-cch
Confidence            4566677777777777666543211    12245666677777777777777433211     1122344455554 444


Q ss_pred             HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC-----CCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102          206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS-----DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI  280 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  280 (577)
                      ++..  +..                            ..+.++     +.++....     ..-|..|+.+|-...+.+.
T Consensus       118 sLys--lGY----------------------------~l~~~~~~~~~~~d~~~ll-----~~hl~~a~~kgll~F~let  162 (192)
T PF03158_consen  118 SLYS--LGY----------------------------KLLFNRMMSEHNEDPTSLL-----TQHLEKAAAKGLLPFVLET  162 (192)
T ss_pred             hHHH--HHH----------------------------HHHHhhcccccccCHHHHH-----HHHHHHHHHCCCHHHHHHH
Confidence            4311  000                            011111     11111000     1246678888888888888


Q ss_pred             HhhCCcccccccCCCCchhhHHHhcCChhHHHHHHh
Q 008102          281 ISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN  316 (577)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~  316 (577)
                      +++|.+. +      .++|..|+.+++.+++.+++.
T Consensus       163 lkygg~~-~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  163 LKYGGNV-D------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHcCCcc-c------HHHHHHHHHhhHHHHHHHhhc
Confidence            8887762 2      278888888888888887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.23  E-value=0.68  Score=40.56  Aligned_cols=136  Identities=13%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             cceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhh
Q 008102           38 ILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQML  117 (577)
Q Consensus        38 ~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l  117 (577)
                      .|..|+.++-   ..+++...+.+...       -...++....||+..+.|+|+++-+.-                   
T Consensus        49 Ll~HAVk~nm---L~ILqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qnL-------------------   99 (192)
T PF03158_consen   49 LLYHAVKYNM---LSILQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQNL-------------------   99 (192)
T ss_pred             HHHHHHHcCc---HHHHHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhcc-------------------
Confidence            4455666666   66666654432211       224456667777777777777773321                   


Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHH----HHHhcCCCCCcCCCC--CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCC
Q 008102          118 GMTNDEKNTALHEAMQHRSLDVVK----ILIKEDPAVPYSTNG--CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG  191 (577)
Q Consensus       118 ~~~~~~g~t~Lh~A~~~g~~~~v~----~Ll~~~~~~~~~~~~--~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g  191 (577)
                        .-.+-.+.+-.|....+.+...    .+.++...- ...|.  --..-|..|+..|-...+...++.|.+++.     
T Consensus       100 --~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-----  171 (192)
T PF03158_consen  100 --HIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-----  171 (192)
T ss_pred             --CCCCchhhhhhhhhccchhHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-----
Confidence              1112234455555555554432    122221100 00000  001224566666666666666666655432     


Q ss_pred             CCHHHHHHHcCCCHHHHHHHH
Q 008102          192 KTALHAAAVNINSIDVVKLLL  212 (577)
Q Consensus       192 ~t~L~~A~~~~~~~~~~~~Ll  212 (577)
                       ++|..|+.. ++..++.+++
T Consensus       172 -~vls~Av~y-nhRkIL~yfi  190 (192)
T PF03158_consen  172 -IVLSQAVKY-NHRKILDYFI  190 (192)
T ss_pred             -HHHHHHHHh-hHHHHHHHhh
Confidence             566666666 6666665554

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.80  E-value=1  Score=40.70  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=13.7

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhc
Q 008102          125 NTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus       125 ~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      .+++-+|+.++..+++.+|+.+
T Consensus       180 ~~Am~~si~~~K~dva~~lls~  201 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSK  201 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhh
Confidence            4566666666666666666654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.52  E-value=1.1  Score=40.60  Aligned_cols=94  Identities=13%  Similarity=0.133  Sum_probs=55.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc--CCHHHHHHHHhcCCCCC--
Q 008102           76 DAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH--RSLDVVKILIKEDPAVP--  151 (577)
Q Consensus        76 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~--  151 (577)
                      .+++.+|...+..+++.+|+..-.-...           ....+..  +.--+.++...  .+..++++.+++|-...  
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~-----------dv~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~  246 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQ-----------DVASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNK  246 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecc-----------hhhhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccch
Confidence            4778888888888899988875322111           1111111  11123333332  35667777777753221  


Q ss_pred             -cCCCCCCChHHHHHHHhCCHHHHHHHHHhCC
Q 008102          152 -YSTNGCGETPLYMAAERGFEKMLTEILENCP  182 (577)
Q Consensus       152 -~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  182 (577)
                       ...-..|.|-|.-|+++++.+|+..|+++|+
T Consensus       247 ~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  247 KFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence             2334457777777777777777777777775

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.67  E-value=0.92  Score=34.01  Aligned_cols=47  Identities=17%  Similarity=0.260  Sum_probs=34.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN  180 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  180 (577)
                      .-+..|+.+|+.|+++.+++.+..        ....+..|+...+.+++++|+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            457788888888888888765411        14567888888888888888776

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=87.36  E-value=19  Score=31.29  Aligned_cols=33  Identities=36%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             ccccccCccchhHHHHhHHHHHHHHHHHHHHHH
Q 008102          464 AAILSKQAAFQAFVISDAIAMALSLSAVFVYFI  496 (577)
Q Consensus       464 ~~~~~~~~~f~~F~~~~~~a~~~s~~~~~~~~~  496 (577)
                      ++.+.+.++|+.|++.|.++...|+.++..-+.
T Consensus        35 ~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~   67 (154)
T TIGR01569        35 KAKFSDLPAFVYFVVANAIACGYSLLSLVVSIF   67 (154)
T ss_pred             eeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455777899999999999999999999887443

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.55  E-value=1.4  Score=33.08  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=40.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102           76 DAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED  147 (577)
Q Consensus        76 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  147 (577)
                      +..+..|+..|+.|+++.+++.+..                       ....+..|+...+-+++++|+++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----------------------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----------------------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----------------------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            3568999999999999999975311                       145799999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=84.47  E-value=15  Score=36.24  Aligned_cols=26  Identities=19%  Similarity=0.173  Sum_probs=15.8

Q ss_pred             cccCCCCchhhHHHhcCChhHHHHHH
Q 008102          290 LVDGRGWNVLHFAMVSFDASDLKHLL  315 (577)
Q Consensus       290 ~~d~~g~t~Lh~A~~~~~~~~v~~Ll  315 (577)
                      ..|..|+-.+..+........-+.++
T Consensus       274 ~~d~~Gn~Viq~~l~~~~~~~~~~i~  299 (322)
T cd07920         274 MKDQYGNYVIQTALDVAKEEQRELLV  299 (322)
T ss_pred             hCCCcccHHHHHHHHhCCHHHHHHHH
Confidence            35667777777777666654444433

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	577
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		4e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-05
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-05
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-05
1uoh_A	226	Human Gankyrin Length = 226		6e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-05
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-04
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		5e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 116/273 (42%), Gaps = 34/273 (12%)
Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
           N K + PLH+AA+ GH  V   L++   K        V + A+        +  T LH A
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAK--------VNAKAK--------DDQTPLHCA 87
Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
            +    ++VK+L+ E+ A P      G TPL++AA  G  + +  +LE   S A     G
Sbjct: 88  ARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 192 KTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL---NS 248
            T LH AA                        + G TPLH A + +   I +LLL    S
Sbjct: 147 FTPLHVAAK--YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 249 DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVDGRGWNVLHFAMVSFD 307
             S A+        T LH+AA Q ++ V   ++ Y      E V  +G   LH A     
Sbjct: 205 PHSPAW-----NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPLHLAAQEGH 257
Query: 308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
           A ++  LL +     NL N   K G TPLHL+A
Sbjct: 258 A-EMVALLLSKQANGNLGN---KSGLTPLHLVA 286

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G  PLH+AA+ GH  VV  L          LE+G +  A+   G       T LH A ++
Sbjct: 2   GRTPLHLAARNGHLEVVKLL----------LEAGADVNAKDKNG------RTPLHLAARN 45
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
             L+VVK+L++    V  + +  G TPL++AA  G  +++  +LE    V  +  +G+T 
Sbjct: 46  GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 195 LHAAAVN 201
           LH AA N
Sbjct: 105 LHLAARN 111

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXX 217
           G TPL++AA  G  +++  +LE    V  +  +G+T LH AA   N              
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR--NGHLEVVKLLLEAGA 59
Query: 218 XXGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVV 277
                D+ G TPLH A+      + +LLL +   +     N R  T LHLAA  G L VV
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR--TPLHLAARNGHLEVV 117
Query: 278 EEII 281
           + ++
Sbjct: 118 KLLL 121

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNA+   G  PLH+AA  GH  +V  L          L++G +  A+  LG+T       
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVL----------LKNGADVNAKDSLGVT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   L++V++L+K    V  +++  G TPL++AA+RG  +++  +L+N   V  +
Sbjct: 84  LHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
              GKTA   +  N N
Sbjct: 143 DKFGKTAFDISIDNGN 158

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           D  GWTPLH A++F    I E+LL +   +     +   +T LHLAA +G L +VE ++ 
Sbjct: 44  DFTGWTPLHLAAHFGHLEIVEVLLKNGADVN--AKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNT 334
              +     D  G+  LH A        ++ LL N   V    N +DK G T
Sbjct: 102 NGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV----NAQDKFGKT 148

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 20/136 (14%)
Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNA+   GD PLH+AA+ GH  +V  L          L++G +  A    G      +T 
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVL----------LKNGADVNALDFSG------STP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   L++V++L+K    V  + +  G TPL++AA+ G  +++  +L+    V  +
Sbjct: 84  LHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
              GKTA   +  N N
Sbjct: 143 DKFGKTAFDISIDNGN 158

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 20/136 (14%)
Query: 71  VNA---KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNA   +G  PLH+AA  GH  +V  L          L+ G +  AR   G T       
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVL----------LKHGADVNARDTDGWT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A  +  L++V++L+K    V  + +  G TPL++AA+RG  +++  +L++   V  +
Sbjct: 84  LHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
              GKTA   +  N N
Sbjct: 143 DKFGKTAFDISIDNGN 158

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 15/87 (17%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLL------NSDKSLAYIVDNDRKMTALHLAAGQGKLR 275
           +D  GWTPLH A+YF    I E+LL      N+D SL         +T LHLAA +G L 
Sbjct: 43  SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG--------VTPLHLAADRGHLE 94
Query: 276 VVEEIISYCPECCELVDGRGWNVLHFA 302
           VVE ++    +     D  G+  LH A
Sbjct: 95  VVEVLLKNGAD-VNANDHNGFTPLHLA 120

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 17/131 (12%)
Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + + ++ G  PLH+AA+ GH  VV  L          L  G +  A+      + +  T 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLL----------LSQGADPNAK------DSDGKTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A ++   +VVK+L+ +  A P + +  G+TPL++AAE G ++++  +L         
Sbjct: 74  LHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 188 GPSGKTALHAA 198
              G+T L  A
Sbjct: 133 DSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 14/157 (8%)
Query: 94  LIEIAKKQPKE-----LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148
           LIE A+   K+     LE+G +  A      ++ +  T LH A ++   +VVK+L+ +  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNA------SDSDGKTPLHLAAENGHKEVVKLLLSQG- 60
Query: 149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXX 208
           A P + +  G+TPL++AAE G ++++  +L        +   GKT LH AA N +     
Sbjct: 61  ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 120
Query: 209 XXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELL 245
                       ++D  G TPL  A       + +LL
Sbjct: 121 LLLSQGADPNTSDSD--GRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/121 (33%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
           L  AAE G +  + ++LEN   V      GKT LH AA N +                 +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
           +D  G TPLH A+      + +LLL S  +     D+D K T LHLAA  G   VV+ ++
Sbjct: 68  SD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLL 123
Query: 282 S 282
           S
Sbjct: 124 S 124

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L EA ++ + D VK L+ E+ A P +++  G TPL+ AAE G ++++  +L        +
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
              G+T LH AA N +                 ++D  G TPLHYA+      I +LLL 
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD--GRTPLHYAAENGHKEIVKLLL- 123
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
           S  +     D+D + T L LA   G   +V+
Sbjct: 124 SKGADPNTSDSDGR-TPLDLAREHGNEEIVK 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + + +  G  PLH+AA  GH  +V  L          L++G +  A   LG      +T 
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVL----------LKNGADVNAYDTLG------STP 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A     L++V++L+K    V    +  G TPL++AA RG  +++  +L+    V  +
Sbjct: 84  LHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
              GKTA   +  N N
Sbjct: 143 DKFGKTAFDISINNGN 158

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           D  G TPLH A++F    I E+LL +   +     +D  +T LHLAA +G L +VE ++ 
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGADVN--AKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 283 Y 283
           Y
Sbjct: 135 Y 135

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + + +  G  PLH+AA  GH  +V  L          L++G +  A  + G
Sbjct: 31  RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVL----------LKNGADVNASDLTG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           +T       LH A     L++V++L+K    V    N  G TPL++AA+ G  +++  +L
Sbjct: 81  IT------PLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
           ++   V  +   GKTA   +  N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 20/136 (14%)
Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNAK   G  PLH+AA+ GH  +V  L          L++G +  A+   G T       
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGYT------P 83
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   L++V++L+K    V  + +  G TPL++AA  G  +++  +L+    V  +
Sbjct: 84  LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 188 GPSGKTALHAAAVNIN 203
              GKTA   +  N N
Sbjct: 143 DKFGKTAFDISIDNGN 158

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + + +  G  PLH+AA  GH  +V  L          L+ G +  A  + G
Sbjct: 31  RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVL----------LKHGADVDASDVFG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
            T       LH A     L++V++L+K    V  + +  G TPL++AA+ G+ +++  +L
Sbjct: 81  YT------PLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
           ++   V  +   GKTA   +  N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 38/160 (23%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L EA +    D V+IL+     V  + N  G TPL++AA  G  +++  +L+        
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLK-------- 68
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
                   H A V+                    +D +G+TPLH A+Y+    I E+LL 
Sbjct: 69  --------HGADVD-------------------ASDVFGYTPLHLAAYWGHLEIVEVLLK 101
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
           +   +  + D+D  MT LHLAA  G L +VE ++ +  + 
Sbjct: 102 NGADVNAM-DSD-GMTPLHLAAKWGYLEIVEVLLKHGADV 139

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G +PLHVAA  G A ++          P  L+ G  + AR      N ++   LH A Q 
Sbjct: 86  GSSPLHVAALHGRADLI----------PLLLKHGANAGAR------NADQAVPLHLACQQ 129
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
               VVK L+  + A P   +  G TPL  A   G  +++  +L++  S+      G TA
Sbjct: 130 GHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 195 LHAAAV 200
           LH A +
Sbjct: 189 LHEAVI 194

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 20/137 (14%)
Query: 70  SVNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
            VNA+ D+   PLH+AA  GH  +V  L          L+ G +  A   +G      +T
Sbjct: 39  DVNAEDDSGKTPLHLAAIKGHLEIVEVL----------LKHGADVNAADKMG------DT 82
Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            LH A  +  L++V++L+K    V  +T+  G TPL++AA+ G  +++  +L+    V  
Sbjct: 83  PLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 187 EGPSGKTALHAAAVNIN 203
           +   GKTA   +  N N
Sbjct: 142 QDKFGKTAFDISIDNGN 158

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGE 221
           L  AA  G +  +  ++ N   V  E  SGKT LH AA  I                   
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAA--IKGHLEIVEVLLKHGADVNA 75
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDR-KMTALHLAAGQGKLRVVEEI 280
            D+ G TPLH A+ +    I E+LL   K+ A +   D    T LHLAA  G L +VE +
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 281 ISYCPEC 287
           + Y  + 
Sbjct: 133 LKYGADV 139

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 20/136 (14%)
Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNAK   G  PLH+AA+ GH  +V  L          L++G +  A+   G       T 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGY------TP 71
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   L++V++L+K    V  + +  G TPL++AA  G  +++  +L+    V  +
Sbjct: 72  LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 188 GPSGKTALHAAAVNIN 203
              GKT    A  N N
Sbjct: 131 DKFGKTPFDLAIDNGN 146

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + + ++ G  PLH AA+ GH  VV  LI            G +  A+      + +  T 
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVVKLLI----------SKGADVNAK------DSDGRTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A ++   +VVK+LI +   V  + +  G TPL+ AAE G ++++  ++     V   
Sbjct: 74  LHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 188 GPSGKTALHAA 198
              G+T L  A
Sbjct: 133 DSDGRTPLDLA 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L EA ++ + D VK LI E+ A   +++  G TPL+ AAE G ++++  ++     V  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
              G+T LH AA N +                 ++D  G TPLH+A+      + +LL++
Sbjct: 67  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD--GRTPLHHAAENGHKEVVKLLIS 124
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
               +    D+D + T L LA   G   VV+
Sbjct: 125 KGADVN-TSDSDGR-TPLDLAREHGNEEVVK 153

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + + +A G  PLH+AA  GH  +V  L          L+ G +  A  ++G
Sbjct: 31  RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIMG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
                 +T LH A     L++V++L+K    V  + +  G+TPL++AA  G  +++  +L
Sbjct: 81  ------STPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
           ++   V  +   GKTA   +  N N
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGN 158

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 110/268 (41%), Gaps = 74/268 (27%)
Query: 77  APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRS 136
           +PLH AA+ GH  +   L++                A   +   ++++ T L EA ++  
Sbjct: 13  SPLHAAAEAGHVDICHMLVQ----------------AGANIDTCSEDQRTPLMEAAENNH 56
Query: 137 LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH 196
           L+ VK LIK    V    +  G T L++AA++G  +++  +L N                
Sbjct: 57  LEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------- 99
Query: 197 AAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIV 256
              +++N                   D  GWTP+ +A+ +    + +LLL S  S   I 
Sbjct: 100 -GQMDVNC-----------------QDDGGWTPMIWATEYKHVDLVKLLL-SKGSDINIR 140
Query: 257 DNDRKMTALHLAAGQGKLRVVEEIISYCPECCEL--VDGRGWNVLHFAMVSFDASDLKHL 314
           DN+  +  LH AA  G + + E +++     C+L  V+  G + LH A            
Sbjct: 141 DNEENI-CLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHIAARE--------- 187
Query: 315 LNNYPIV------RNLINDKDKEGNTPL 336
            N Y  V       + +  K+KEG TPL
Sbjct: 188 -NRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 17/105 (16%)
Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G  PLH+AA+ GH  VV  L          LE+G +  A+   G       T LH A ++
Sbjct: 2   GRTPLHLAARNGHLEVVKLL----------LEAGADVNAKDKNG------RTPLHLAARN 45
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
             L+VVK+L++    V  + +  G TPL++AA  G  +++  +LE
Sbjct: 46  GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
           T+ +  TALH A      ++V+ L++    VP +  +  G +PL++AA  G ++++  +L
Sbjct: 37  TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
                       GK A    AVN N                      G TPLHYA+  +R
Sbjct: 95  ------------GKGA-QVNAVNQN----------------------GCTPLHYAASKNR 119
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
           + IA +LL    N D    Y      + TA+H AA +G L+++  I+ Y      + D  
Sbjct: 120 HEIAVMLLEGGANPDAKDHY------EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTE 172
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
           G   LH A       + K L++        I  ++KE  TPL +
Sbjct: 173 GNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQV 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
           T+ +  TALH A      ++V+ L++    VP +  +  G +PL++AA  G ++++  +L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
                       GK A    AVN N                      G TPLHYA+  +R
Sbjct: 94  ------------GKGA-QVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
           + IA +LL    N D    Y      + TA+H AA +G L+++  I+ Y      + D  
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------EATAMHRAAAKGNLKMI-HILLYYKASTNIQDTE 171
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
           G   LH A       + K L++        I  ++KE  TPL +
Sbjct: 172 GNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQV 211

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 86/224 (38%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
           T+ +  TALH A      ++V+ L++    VP +  +  G +PL++AA  G ++++  +L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
                            H  AVN N                      G TPLHYA+  +R
Sbjct: 94  -------------VKGAHVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
           + IA +LL    N D    Y        TA+H AA +G L++V                 
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------DATAMHRAAAKGNLKMV----------------- 155
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                             H+L  Y    N+   +D EGNTPLHL
Sbjct: 156 ------------------HILLFYKASTNI---QDTEGNTPLHL 178

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNAK   G  PLH+AA+ GH  +V  L          L++G +  A+   G       T 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAKDKDGY------TP 71
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   L++V++L+K    V  + +  G TPL++AA  G  +++  +L+    V  +
Sbjct: 72  LHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 188 GPSGKTALHAA 198
              GKT    A
Sbjct: 131 DKFGKTPFDLA 141

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 68  LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           + + ++ G  PLH AAK GH  +V  LI            G +  A+      + +  T 
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLLI----------SKGADVNAK------DSDGRTP 73
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +    ++VK+LI +   V  + +  G TPL+ AA+ G ++++  ++     V   
Sbjct: 74  LHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 188 GPSGKTALHAA 198
              G+T L  A
Sbjct: 133 DSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L EA ++ + D VK LI E+ A   +++  G TPL+ AA+ G ++++  ++     V  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 188 GPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLLN 247
              G+T LH AA   +                 ++D  G TPLHYA+      I +LL++
Sbjct: 67  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD--GRTPLHYAAKEGHKEIVKLLIS 124
Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
               +    D+D + T L LA   G   +V+
Sbjct: 125 KGADVN-TSDSDGR-TPLDLAREHGNEEIVK 153

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 18/102 (17%)
Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
           PLH+AA  GHA++V  L          L+ G +  A+ ML MT      ALH A +H   
Sbjct: 70  PLHMAASEGHANIVEVL----------LKHGADVNAKDMLKMT------ALHWATEHNHQ 113
Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
           +VV++LIK    V   +  C +T   ++ + G E  L EIL+
Sbjct: 114 EVVELLIKYGADVHTQSKFC-KTAFDISIDNGNED-LAEILQ 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + + +A G  PLH+AA  GH  +V  L          L+ G +  A  + G
Sbjct: 31  RILMANGADVNATDASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIXG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
                 +T LH A     L++V++L+K    V  + +  G+TPL++AA  G  +++  +L
Sbjct: 81  ------STPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTA 194
           ++   V  +   GKTA
Sbjct: 134 KHGADVNAQDKFGKTA 149

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 86/224 (38%)
Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEIL 178
           T+ +  TALH A      ++V+ L++    VP +  +  G +PL++AA  G ++++  +L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 179 ENCPSVAHEGPSGKTALHAAAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDR 238
                            H  AVN N                      G TPLHYA+  +R
Sbjct: 94  -------------VKGAHVNAVNQN----------------------GCTPLHYAASKNR 118
Query: 239 NIIAELLL----NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
           + IA +LL    N D    Y        TA+H AA +G L++V                 
Sbjct: 119 HEIAVMLLEGGANPDAKDHY------DATAMHRAAAKGNLKMV----------------- 155
Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                             H+L  Y    N+   +D EGNTPLHL
Sbjct: 156 ------------------HILLFYKASTNI---QDTEGNTPLHL 178

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
           D V+IL+     V  +T+  G TPL++AA  G  +++  +L+N   V     +G T LH 
Sbjct: 20  DEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHL 78
Query: 198 AAVNINXXXXXXXXXXXXXXXXGETDRYGWTPLHYASYFDRNIIAELLL 246
           AA + +                   DR GWTPLH A+   +  I E+LL
Sbjct: 79  AAYDGHLEIVEVLLKHGADVNA--YDRAGWTPLHLAALSGQLEIVEVLL 125

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G  PLH+AA  GH  +V  L          L +G +  A    G       T LH A   
Sbjct: 35  GRTPLHMAAAVGHLEIVEVL----------LRNGADVNAVDTNG------TTPLHLAASL 78
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
             L++V++L+K    V  + +  G TPLY+AA  G  +++  +L++   V  +   GKTA
Sbjct: 79  GHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 195 L 195
Sbjct: 138 F 138

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G  PLH+AAK GH  +V  L          L+ G +  A    G       T LH A  +
Sbjct: 47  GHTPLHLAAKTGHLEIVEVL----------LKYGADVNAWDNYGA------TPLHLAADN 90
Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
             L++V++L+K    V  + +  G TPL++AA  G  +++  +L+    V  +   GKTA
Sbjct: 91  GHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 195 LHAAAVNIN 203
              +  N N
Sbjct: 150 FDISIDNGN 158

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + +V+  G  PLH+AA  GH  +V  L          L+ G +  A  + G
Sbjct: 31  RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVL----------LKHGADVDAADVYG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
            T       LH A     L++V++L+K    V  + +  G TPL++AA+ G  +++  +L
Sbjct: 81  FT------PLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
           +    V  +   GKTA   +  N N
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGN 158

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 222 TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
           +D+ GWTPLH A+Y     I E+LL     +  +  + +  T LHLAA  G L +VE ++
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 282 SYCPEC 287
            Y  + 
Sbjct: 134 KYGADV 139

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 17/145 (11%)
Query: 59  QILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLG 118
           +IL    + + + +A G  PLH+AA  GH  +V  L          L++G +  A    G
Sbjct: 31  RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL----------LKNGADVNAVDHAG 80
Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           MT       L  A     L++V++L+K    V  + +  G TPL++AA  G  +++  +L
Sbjct: 81  MT------PLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLL 133
Query: 179 ENCPSVAHEGPSGKTALHAAAVNIN 203
           +N   V  +   GKTA   +  N N
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGN 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	577
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-40
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-37
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-30
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-32
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-33
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-33
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-30
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-25
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-21
2rfa_A	232	Transient receptor potential cation channel subfa	5e-32
2rfa_A	232	Transient receptor potential cation channel subfa	5e-26
2rfa_A	232	Transient receptor potential cation channel subfa	2e-25
2rfa_A	232	Transient receptor potential cation channel subfa	5e-24
2rfa_A	232	Transient receptor potential cation channel subfa	1e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-30
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-29
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-28
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-16
2pnn_A	273	Transient receptor potential cation channel subfa	1e-27
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	5e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-27
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-19
2etb_A	256	Transient receptor potential cation channel subfam	4e-26
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	6e-24
2etb_A	256	Transient receptor potential cation channel subfam	1e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-23
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-18
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  158 bits (402), Expect = 6e-43
 Identities = 79/295 (26%), Positives = 121/295 (41%), Gaps = 49/295 (16%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           L +  +LLQ   S N      + PLH+AA+ GH  V   L++          +  +  A+
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----------NKAKVNAK 76

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
                   +  T LH A +    ++VK+L++ + A P      G TPL++AA  G  + +
Sbjct: 77  ------AKDDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETV 129

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
             +LE   S A     G T LH AA     + V +LLL++         + G TPLH A 
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAH-PNAAGKNGLTPLHVAV 187

Query: 235 YFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVD 292
           + +   I +LLL              +   T LH+AA Q ++ V   ++ Y         
Sbjct: 188 HHNNLDIVKLLLPRG---GSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGS-ANAES 242

Query: 293 GRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
            +G   LH A              +  +V  L+      N  +K G TPLH L A
Sbjct: 243 VQGVTPLHLAAQE----------GHAEMVALLLSKQANGNLGNKSGLTPLH-LVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (392), Expect = 2e-41
 Identities = 76/283 (26%), Positives = 117/283 (41%), Gaps = 46/283 (16%)

Query: 70  SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
           S       G  PLHVA+  GH  +V  L+          + G            N +  T
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLL----------QRGASPNVS------NVKVET 49

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            LH A +    +V K L++   A   +     +TPL+ AA  G   M+  +LEN  +   
Sbjct: 50  PLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
              +G T LH AA     ++ V  LL+ K++      + G+TPLH A+ + +  +AELLL
Sbjct: 109 ATTAGHTPLHIAARE-GHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 247 NSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304
             D   A+      +  +T LH+A     L +V+ ++             G+  LH A  
Sbjct: 167 ERD---AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAK 221

Query: 305 SFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
                      N   + R+L+      N +  +G TPLH LAA
Sbjct: 222 Q----------NQVEVARSLLQYGGSANAESVQGVTPLH-LAA 253

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  150 bits (382), Expect = 4e-40
 Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 48/292 (16%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           +E   +LL+   S       G  PLHVAAK G   V   L+E                A 
Sbjct: 126 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE----------RDAHPNAA 175

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
                      T LH A+ H +LD+VK+L+      P+S    G TPL++AA++   ++ 
Sbjct: 176 ------GKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
             +L+   S   E   G T LH AA      ++V LLL K+ +     ++ G TPLH  +
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQE-GHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVA 286

Query: 235 YFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVD 292
                 +A++L+        +         T LH+A+  G +++V+ ++ +  +      
Sbjct: 287 QEGHVPVADVLIKHG---VMVDATTRMGY-TPLHVASHYGNIKLVKFLLQHQAD-VNAKT 341

Query: 293 GRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
             G++ LH A              +  IV  L+      N+   +G TPL +
Sbjct: 342 KLGYSPLHQAAQQ----------GHTDIVTLLLKNGASPNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  134 bits (340), Expect = 2e-34
 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 59/276 (21%)

Query: 70  SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
           S ++    G  PLH+AAK     V  +L++           G  + A       + +  T
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQ----------YGGSANAE------SVQGVT 247

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            LH A Q    ++V +L+ +  A     N  G TPL++ A+ G   +   ++++   V  
Sbjct: 248 PLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
               G T LH A+    +I +VK LL  + + +    + G++PLH A+      I  LLL
Sbjct: 307 TTRMGYTPLHVASHY-GNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364

Query: 247 NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306
            +  S    V +D   T L +A   G + V +                            
Sbjct: 365 KNGASP-NEVSSDGT-TPLAIAKRLGYISVTD---------------------------- 394

Query: 307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL 342
                  +L       + +   DK   +    +  +
Sbjct: 395 -------VLKVVTDETSFVLVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  119 bits (302), Expect = 2e-29
 Identities = 60/230 (26%), Positives = 94/230 (40%), Gaps = 35/230 (15%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           +E+  SLLQ   S NA+   G  PLH+AA+ GHA +V  L+                   
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS----------KQANGNLG 274

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
                 N    T LH   Q   + V  +LIK    +  +T   G TPL++A+  G  K++
Sbjct: 275 ------NKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLV 327

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
             +L++   V  +   G + LH AA      D+V LLL    +   E    G TPL  A 
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAK 385

Query: 235 YFDRNIIAELLLNSDKSLAYI-VDNDRKMTALHLAAGQGKLRVVEEIISY 283
                 + ++L       +++ V +  +M+             V+EI+  
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDV 426

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  146 bits (371), Expect = 4e-40
 Identities = 67/294 (22%), Positives = 98/294 (33%), Gaps = 63/294 (21%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
             + +  L  A +     +V  L+E           G     +       +   T LH A
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLE----------GGANVNFQ-----EEEGGWTPLHNA 46

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
           +Q    D+V++L++   A P      G TP  +AA  G  K+L   L     V      G
Sbjct: 47  VQMSREDIVELLLRHG-ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 192 KTALHAAAVNINSIDVVKLLL---------DKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
            TA   AAV    +  +K L           K K       + G T L  A+      + 
Sbjct: 106 FTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164

Query: 243 ELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV--------- 291
           ++LL  D+  A +   DN  +  AL  A        VE I         L+         
Sbjct: 165 KILL--DEMGADVNACDNMGR-NALIHALLSSDDSDVEAITHL------LLDHGADVNVR 215

Query: 292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL-------INDKDKEGNTPLHL 338
             RG   L  A+             +  +V+ L       IND D +G T L L
Sbjct: 216 GERGKTPLILAVEK----------KHLGLVQRLLEQEHIEINDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (314), Expect = 3e-32
 Identities = 48/236 (20%), Positives = 78/236 (33%), Gaps = 50/236 (21%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
              +   G  P  +AA  G   ++   +            G +          +    TA
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLS----------KGADVNEC------DFYGFTA 108

Query: 128 LHEAMQHRSLDVVKILIK---------EDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
             EA  +  +  +K L K         +           G T L  AAE+G  ++  +IL
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV-LKIL 167

Query: 179 ENCPSVAHEGP-------SGKTALHAAAVN---INSIDVVKLLLDKKKSLIGETDRYGWT 228
                +   G         G+ AL  A ++    +   +  LLLD   + +      G T
Sbjct: 168 -----LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKT 221

Query: 229 PLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIIS 282
           PL  A       + + LL  +     I   D+D K TAL LA      ++ E +  
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEH--IEINDTDSDGK-TALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 35/169 (20%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  A  N   +D+V+ LL+   ++  + +  GWTPLH A    R  I ELLL    
Sbjct: 5   DNHLLIKAVQN-EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG- 62

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A       +   T   LAA  G +++++  +S   +     D  G+     A V    
Sbjct: 63  --ADPVLRKKNGA-TPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVY--- 115

Query: 309 SDLKHLLNNYPIVRNLI------NDKDK----------EGNTPLHLLAA 341
                       ++ L       N + K           G T L   AA
Sbjct: 116 -------GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM-DAA 156

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 76.7 bits (190), Expect = 1e-15
 Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 34/154 (22%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
              G   L  AA+ GH  V+  L++         E G +  A       ++    AL  A
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLD---------EMGADVNAC------DNMGRNALIHA 189

Query: 132 MQHRS----LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           +          +  +L+    A        G+TPL +A E+    +  + L     +  E
Sbjct: 190 LLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGL-VQRL-----LEQE 242

Query: 188 GP-------SGKTALHAAAVNINSIDVVKLLLDK 214
                     GKTAL  A        + +LL  +
Sbjct: 243 HIEINDTDSDGKTALLLAVEL-KLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 56/142 (39%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILH---VNIISRDRETIVSTEFVEQILEM 63
           L  A    +    + I+++L           + H   VN+     +T             
Sbjct: 186 LIHALLSSDDSDVEAITHLL-----------LDHGADVNVRGERGKT------------- 221

Query: 64  CPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDE 123
                         PL +A +  H  +V  L+E         +  +E         T+ +
Sbjct: 222 --------------PLILAVEKKHLGLVQRLLE---------QEHIEIND------TDSD 252

Query: 124 KNTALHEAMQHRSLDVVKILIK 145
             TAL  A++ +   + ++L K
Sbjct: 253 GKTALLLAVELKLKKIAELLCK 274

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  137 bits (348), Expect = 2e-37
 Identities = 59/228 (25%), Positives = 99/228 (43%), Gaps = 25/228 (10%)

Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           M +  K + LH A +   +D+  +L++   A   + +    TPL  AAE    + +  ++
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
           +    V  +   G T LH AA      +VV+ LL   +  +   D  GWTP+ +A+ +  
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123

Query: 239 NIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
             + +LLL+     + I   DN+     LH AA  G + + E +++   +    V+  G 
Sbjct: 124 VDLVKLLLSKG---SDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGD 178

Query: 297 NVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
           + LH A     A +     N Y  V   +        K+KEG TPL  
Sbjct: 179 SPLHIA-----ARE-----NRYDCVVLFLSRDSDVTLKNKEGETPLQC 216

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  127 bits (321), Expect = 1e-33
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 29/219 (13%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           ++        PL  AA+  H   V  LI+  A   PK                 + E +T
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-----------------DAEGST 79

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            LH A +    +VV+ L+          +  G TP+  A E     ++  +L     +  
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
                   LH AA +   +D+ ++LL  K   +   + +G +PLH A+  +R     L L
Sbjct: 140 RDNEENICLHWAAFS-GCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFL 197

Query: 247 NSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
           + D   + +   + + + T L  A+   ++    ++   
Sbjct: 198 SRD---SDVTLKNKEGE-TPLQCASLNSQVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 5e-15
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 25/132 (18%)

Query: 219 IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRV 276
                +   +PLH A+      I  +L+ +    A I     D + T L  AA    L  
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG---ANIDTCSED-QRTPLMEAAENNHLEA 59

Query: 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI-------NDKD 329
           V+ +I       +  D  G   LH A  +           +Y +V+ L+       N +D
Sbjct: 60  VKYLIKAGAL-VDPKDAEGSTCLHLA--AKK--------GHYEVVQYLLSNGQMDVNCQD 108

Query: 330 KEGNTPLHLLAA 341
             G TP+   A 
Sbjct: 109 DGGWTPMI-WAT 119

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  141 bits (357), Expect = 2e-37
 Identities = 58/280 (20%), Positives = 98/280 (35%), Gaps = 54/280 (19%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VNA       PLH AA      V + L+            G + T        N    +A
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLS----------HGADPTLV------NCHGKSA 160

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           +  A      + +    K            G + L  AA       + + L        +
Sbjct: 161 VDMAPTPELRERLTYEFK------------GHSLLQ-AAREADLAKVKKTLALEIINFKQ 207

Query: 188 GPSGKTALHAAAVN--INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
             S +TALH A  +       V +LLL K  + + E ++   TPLH A+    N + E+L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

Query: 246 LNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAM 303
                  A +  +D+  + TALH AA  G L+    ++SY  +   ++  +G+       
Sbjct: 267 HKHG---AKMNALDSLGQ-TALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMG- 320

Query: 304 VSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC 343
                  ++ +L+        +   D   +  L   A+  
Sbjct: 321 ----NEAVQQILSESTP----MRTSDV--DYRLL-EASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  131 bits (331), Expect = 7e-34
 Identities = 53/280 (18%), Positives = 95/280 (33%), Gaps = 50/280 (17%)

Query: 71  VNAKGDA---PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
               G+     L  AA+ G+   + AL+             V   A       +  K+T 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALL---------TPLNVNCHAS------DGRKSTP 61

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A  +  + +V++L++   A  ++ +  G  PL+ A   G  ++   +L++   V   
Sbjct: 62  LHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM 120

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
                T LH AA   N ++V  LLL    +     + +G + +  A   +          
Sbjct: 121 DLWQFTPLHEAASK-NRVEVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
                          + L  A      +V + +        +         LH       
Sbjct: 179 -------------GHSLLQAAREADLAKVKKTLALEIINFKQ--PQSHETALHC------ 217

Query: 308 ASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
           A    H      +   L+      N+K+K+  TPLH +AA
Sbjct: 218 AVASLH-PKRKQVAELLLRKGANVNEKNKDFMTPLH-VAA 255

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (306), Expect = 2e-30
 Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 27/235 (11%)

Query: 120 TNDEKNTALHE-AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           T + K   L E A       ++ +L   +    ++++G   TPL++AA     +++  +L
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN-VNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
           ++   V  +   G   LH A       +V +LLL      +   D + +TPLH A+  +R
Sbjct: 79  QHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNR 136

Query: 239 NIIAELLLN--SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
             +  LLL+  +D +L    +   K +A+ +A        +                 G 
Sbjct: 137 VEVCSLLLSHGADPTLV---NCHGK-SAVDMAPTPELRERLTYEFK------------GH 180

Query: 297 NVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIV 351
           ++L  A    D + +K  L    I       + +   T LH   A       ++ 
Sbjct: 181 SLLQAA-READLAKVKKTLALEIIN----FKQPQSHETALHCAVASLHPKRKQVA 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 3e-21
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 42/195 (21%)

Query: 157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK 216
            G++ L             ++ +        G   K  L  AA + N   ++ LL     
Sbjct: 3   FGKSAL-------------DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-PLN 48

Query: 217 SLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKL 274
                +D    TPLH A+ ++R  I +LLL      A +   D    +  LH A   G  
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG---ADVHAKDKG-GLVPLHNACSYGHY 104

Query: 275 RVVEEIISY--CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------N 326
            V E ++ +  C      +D   +  LH A             N   +   L+       
Sbjct: 105 EVTELLLKHGACVNA---MDLWQFTPLHEAASK----------NRVEVCSLLLSHGADPT 151

Query: 327 DKDKEGNTPLHLLAA 341
             +  G + +  +A 
Sbjct: 152 LVNCHGKSAVD-MAP 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 32/146 (21%), Positives = 49/146 (33%), Gaps = 43/146 (29%)

Query: 224 RYGWTPLH---------------------YASYFDRNIIAELLLNSDKSLAYI-VDNDRK 261
            +G + L                       A   +   +  LL   +         + RK
Sbjct: 2   EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN---VNCHASDGRK 58

Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
            T LHLAAG  ++R+V+ ++ +  +     D  G   LH A      S       +Y + 
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNA-----CSY-----GHYEVT 107

Query: 322 RNLI------NDKDKEGNTPLHLLAA 341
             L+      N  D    TPLH  AA
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLH-EAA 132

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 27/102 (26%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           +NA    G   LH AA  GH      L+            G + +        + +  TA
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLL----------SYGSDPSII------SLQGFTA 316

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
                     + V+ ++ E   +  S     +  L  A++ G
Sbjct: 317 AQMGN-----EAVQQILSESTPMRTSDV---DYRLLEASKAG 350

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  140 bits (354), Expect = 6e-37
 Identities = 59/363 (16%), Positives = 108/363 (29%), Gaps = 82/363 (22%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           L EA+  G I+  +            +           + +            + +   +
Sbjct: 41  LLEASYDGYIKRQRNELQ--------HYSLYPNPQGYGNGNDF----------LGDFNHT 82

Query: 67  LLQSVNAK---GDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGM 119
            LQ            LH  A  G  ++   +      I                      
Sbjct: 83  NLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIIDP------------------- 122

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-------TNGCGETPLYMAAERGFEK 172
                 T LH    + S +  + LI  +     +        +    TPL +A      +
Sbjct: 123 --RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 173 MLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL--IGETDRYGWTPL 230
           ++  +++          S ++ALH AA N     ++  +L+  K    I E DR G T L
Sbjct: 181 LVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239

Query: 231 HYASYF---DRNIIAELLL------NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII 281
              ++    D+   A+LL+      + D +     +  +  TALH AA    + +V+ ++
Sbjct: 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV 299

Query: 282 SYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTP 335
                  +  D  G   +  A                 +V  LI         D   +T 
Sbjct: 300 GEKGSNKDKQDEDGKTPIMLAAQE----------GRIEVVMYLIQQGASVEAVDATDHTA 349

Query: 336 LHL 338
             L
Sbjct: 350 RQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  133 bits (338), Expect = 1e-34
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 51/274 (18%)

Query: 33  NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQS----VNAK---GDAPLHVAAKC 85
            +  T+LH    +   E        E ++        +    VNA     + PL +A   
Sbjct: 123 RHNRTVLHWIASNSSAEK------SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176

Query: 86  GHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK 145
               +V  L++           G + T        N  + +ALH+A  +R   ++  ++ 
Sbjct: 177 RRRRLVAYLMKA----------GADPTIY------NKSERSALHQAAANRDFGMMVYMLN 220

Query: 146 EDP--AVPYSTNGCGETPLYMAAERGFEKMLTEILE---------NCPSVAHEGP---SG 191
                      +  G T L + A       +    +         +    A +      G
Sbjct: 221 STKLKGDIEELDRNGMTALMIVAHNEGRDQV-ASAKLLVEKGAKVDYDGAARKDSEKYKG 279

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS 251
           +TALH AA   +++ +VK L+ +K S   + D  G TP+  A+   R  +   L+     
Sbjct: 280 RTALHYAAQV-SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-- 336

Query: 252 LAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
            A +  VD     TA  LA       +V+     
Sbjct: 337 -ASVEAVDATDH-TARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (297), Expect = 3e-29
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 42/264 (15%)

Query: 87  HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE 146
           +ASV    +E  +K  K  +S                   +L EA     +   +  ++ 
Sbjct: 13  NASVWMPPMENEEKNRKNHQS-------------ITSSQHSLLEASYDGYIKRQRNELQH 59

Query: 147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALHAAAVNINSI 205
                         P       G    L +       +  E  P     LH  A    S 
Sbjct: 60  Y----------SLYPNPQGYGNGN-DFLGDFNHTNLQIPTEPEPESPIKLHTEAA--GSY 106

Query: 206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSL-----AYI--VDN 258
            + + +  +  ++I    R+  T LH+ +       +E L+  +        A +  +D 
Sbjct: 107 AITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164

Query: 259 DRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDL-KHLLNN 317
           D + T L LA    + R+V  ++    +   + +    + LH A  +     +  ++LN+
Sbjct: 165 D-ENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQA-AANRDFGMMVYMLNS 221

Query: 318 YPIVRNLINDKDKEGNTPLHLLAA 341
             +  + I + D+ G T L  + A
Sbjct: 222 TKLKGD-IEELDRNGMTALM-IVA 243

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  136 bits (346), Expect = 1e-36
 Identities = 50/296 (16%), Positives = 83/296 (28%), Gaps = 51/296 (17%)

Query: 67  LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
           +   V   GD  LH+A    H   +  L+                     L + ND   T
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLL----------GFSAGHEY---LDLQNDLGQT 47

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
           ALH A        V+ L     A        G T L++A           +L+  PS   
Sbjct: 48  ALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 187 EGP-------------SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233
           +               +        +      +      D +   +   +  G TPLH A
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVA 165

Query: 234 SYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV 291
                  +  LL ++    A +   +     T LHLA       V+E ++    +     
Sbjct: 166 VIHKDAEMVRLLRDAG---ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTAR 221

Query: 292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
              G   L  A++            N  + R L        +   +  +P    + 
Sbjct: 222 MYGGRTPLGSALLR----------PNPILARLLRAHGAPEPEDGGDKLSPCS-SSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  126 bits (320), Expect = 5e-33
 Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 17/220 (7%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           V      G   LH+A +    +    L++    +P       ++   Q    T D  +  
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQ---PRPSHPRDASDTYLTQSQDCTPDTSHAP 127

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPSV-A 185
                Q    +  +   ++      + N  G TPL++A      +M   +L +    +  
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM-VRLLRDAGADLNK 186

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
            E   G+T LH A     +  V++LLL             G TPL  A      I+A LL
Sbjct: 187 PEPTCGRTPLHLAVEA-QAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLL 244

Query: 246 LNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
                  A       D+  +    +         +E   Y
Sbjct: 245 RAHG---APEPEDGGDKL-SPCSSSGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  122 bits (309), Expect = 2e-31
 Identities = 45/246 (18%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLYMAAERGFEKML 174
            G   ++ +TALH A+ H+    +  L+            N  G+T L++AA  G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK------------KSLIGET 222
            ++      V      G TALH A     +     +LL  +                  T
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
                 P    S  +     E      +      + D   T LH+A       +V  +  
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH-TPLHVAVIHKDAEMVRLLRD 179

Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPL 336
              +  +     G   LH A                 ++  L+        +   G TPL
Sbjct: 180 AGADLNKPEPTCGRTPLHLA-----VEA-----QAASVLELLLKAGADPTARMYGGRTPL 229

Query: 337 HLLAAL 342
              A L
Sbjct: 230 G-SALL 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  135 bits (342), Expect = 1e-36
 Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 69/279 (24%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
                  GD PLH+A   G+   V  L+ +        + G E      L + N+ + T 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLF------QQGGRE------LDIYNNLRQTP 49

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-----ENCP 182
           LH A+      VV++L+    A P + +  G+T  ++A E          L         
Sbjct: 50  LHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLACEHRSPTC-LRALLDSAAPGTL 107

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDR-YGWTPLHYASYFDRNII 241
            +      G TALH A       + V+LLL+ + + I   D   G +PL +A   +   +
Sbjct: 108 DLEARNYDGLTALHVAVNT-ECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSM 165

Query: 242 AELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVL 299
            +LLL      A +         +ALH A+G+G L +V  ++             G +  
Sbjct: 166 VQLLLQHG---ANVNAQMYSGS-SALHSASGRGLLPLVRTLVRS-----------GAD-- 208

Query: 300 HFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                                     + K+   +TPL +
Sbjct: 209 -------------------------SSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  131 bits (331), Expect = 5e-35
 Identities = 50/264 (18%), Positives = 96/264 (36%), Gaps = 45/264 (17%)

Query: 33  NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAK---GDAPLHVAAKCGHAS 89
            + +T LH+ ++  +         V +++ +     + ++        PLH+A      S
Sbjct: 7   EDGDTPLHIAVVQGNLPA------VHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 90  VVTALIE----IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK 145
           VV  L+                             +    TA H A +HRS   ++ L+ 
Sbjct: 61  VVRLLVTAGASPMAL--------------------DRHGQTAAHLACEHRSPTCLRALLD 100

Query: 146 ---EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV-AHEGPSGKTALHAAAVN 201
                     + N  G T L++A     ++ +  +LE    + A +  SG++ L  A  N
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160

Query: 202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDND 259
            NS+ +V+LLL    + +      G + LH AS      +   L+ S    A     +  
Sbjct: 161 -NSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSG---ADSSLKNCH 215

Query: 260 RKMTALHLAAGQGKLRVVEEIISY 283
              T L +A  +  + ++    + 
Sbjct: 216 ND-TPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.6 bits (195), Expect = 1e-16
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 8/127 (6%)

Query: 221 ETDRYGWTPLHYASYFDRNIIAELLLNSDKSL-AYI--VDNDRKMTALHLAAGQGKLRVV 277
             D  G TPLH A           L+N  +     +   +N R+ T LHLA       VV
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPSVV 62

Query: 278 EEIISYCPECCELVDGRGWNVLHFAMVSFDASD-LKHLLNNYPIVRNLINDKDKEGNTPL 336
             +++        +D  G    H A     +   L+ LL++       +  ++ +G T L
Sbjct: 63  RLLVTAGAS-PMALDRHGQTAAHLA-CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 337 HLLAALC 343
           H +A   
Sbjct: 121 H-VAVNT 126

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  137 bits (348), Expect = 3e-36
 Identities = 52/285 (18%), Positives = 90/285 (31%), Gaps = 64/285 (22%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
                      +HVAA+ G    V  LI          E+GV  T +      N    TA
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLI----------ETGVSPTIQ------NRFGCTA 56

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A +   +D  K L      V    +  G+ P+++A       +    L     V   
Sbjct: 57  LHLACKFGCVDTAKYLASVG-EVHSLWH--GQKPIHLAVMANKTDL-VVAL-----VEGA 107

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI--IAELL 245
              G+          +  +V ++    K          G T LH+          + ++L
Sbjct: 108 KERGQMPESLLNEC-DEREVNEIGSHVK-------HCKGQTALHWCVGLGPEYLEMIKIL 159

Query: 246 LNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECC----ELVDGRGWNVL 299
           +      A     D   + T L  A        ++ ++   P       +  + +G + L
Sbjct: 160 VQLG---ASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 300 HFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
           H+A++           N   +    +      N +D E   PL+L
Sbjct: 216 HWAILI----------NWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  134 bits (341), Expect = 3e-35
 Identities = 40/287 (13%), Positives = 84/287 (29%), Gaps = 55/287 (19%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN-- 125
              +   G   LH+A K G       L  +                    G  +   +  
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLASV--------------------GEVHSLWHGQ 85

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
             +H A+     D+V  L++            G+ P  +  E    ++  EI  +     
Sbjct: 86  KPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDEREV-NEIGSHVKHC- 136

Query: 186 HEGPSGKTALH-AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
                G+TALH    +    ++++K+L+    +     D+   TPL  A  F      +L
Sbjct: 137 ----KGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 245 LLNSDKSL--AYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLH 300
           ++++  S     +   +     + LH A       V    +    +   + D      L+
Sbjct: 192 MMDTVPSKSSLRLDYANKQ-GNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLY 249

Query: 301 FA-------MVSF--DASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
            +       +       +D+  +          +          +  
Sbjct: 250 LSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  134 bits (340), Expect = 5e-35
 Identities = 50/360 (13%), Positives = 102/360 (28%), Gaps = 82/360 (22%)

Query: 7   LYEAAAKGEIEPFKEISNVL---GRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEM 63
           L+ A   G      + +  L   G V +  +    +H+ +++        T+ V      
Sbjct: 57  LHLACKFG----CVDTAKYLASVGEVHSLWHGQKPIHLAVMAN------KTDLVVA---- 102

Query: 64  CPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDE 123
              L++    +G  P  +  +C    V      +                       + +
Sbjct: 103 ---LVEGAKERGQMPESLLNECDEREVNEIGSHV----------------------KHCK 137

Query: 124 KNTALHEA--MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
             TALH    +    L+++KIL++   A P + +   ETPL  A E    +   +++ + 
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADETPLMRAMEFRNREA-LDLMMDT 195

Query: 182 PSVAH------EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
                          G + LH A +  N  DV    ++     +   D     PL+ +  
Sbjct: 196 VPSKSSLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVR 253

Query: 236 FDRNIIAELLLNSDKSLAYI-----------VDNDRKMTALHLAAGQGKLRVVEEIISYC 284
               ++ + LL                     D    +  +  AA   K  V++ +    
Sbjct: 254 AAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL 313

Query: 285 PECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
            E        G                        + R  +        + +       +
Sbjct: 314 DEVVR-SLNTGAGGAVKR-----KKK-----AAPAVKRMKLAPSAPVRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (314), Expect = 1e-31
 Identities = 46/230 (20%), Positives = 85/230 (36%), Gaps = 30/230 (13%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
           ++DE    +H A +    D V+ LI+     P   N  G T L++A + G       +  
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
                +     G+  +H A +  N  D+V  L++            G  P    +  D  
Sbjct: 75  VGEVHSLW--HGQKPIHLAVMA-NKTDLVVALVEGA-------KERGQMPESLLNECDER 124

Query: 240 IIAELLLNSDKSLAYIVDNDRKMTALHLAA--GQGKLRVVEEIISY--CPECCELVDGRG 295
            + E+  +       +     + TALH     G   L +++ ++     P      D   
Sbjct: 125 EVNEIGSH-------VKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPTAK---DKAD 173

Query: 296 WNVLHFAMVSFDASDL-KHLLNNYPIVRNL-INDKDKEGNTPLHLLAALC 343
              L  A + F   +    +++  P   +L ++  +K+GN+ LH  A L 
Sbjct: 174 ETPLMRA-MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH-WAILI 221

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  117 bits (296), Expect = 4e-29
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 57/284 (20%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
                   E E  +  S+V      H    T LH                  + LEM   
Sbjct: 115 ESLLNECDEREVNEIGSHV-----KHCKGQTALHW-----------CVGLGPEYLEMIKI 158

Query: 67  LLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
           L+Q   S  AK    + PL  A +  +   +  +++    +     S +           
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK-----SSLRLDYA------ 207

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-- 178
           N + N+ LH A+     DV    ++         +     PLY++       + T+ L  
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLL-TKELLQ 265

Query: 179 -------ENCPS-----VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYG 226
                  + CP      V  +       + AAA   +  +V++LL  +K   +  +   G
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP-SKQEVLQLLQ-EKLDEVVRSLNTG 323

Query: 227 WTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLA 268
                         +  + L      A +      R   +  ++
Sbjct: 324 AGGAVKRKKKAAPAVKRMKLAPS---APVRTRSRSRA-RSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 6e-15
 Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 19/132 (14%)

Query: 211 LLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI-VDNDRKMTALHLAA 269
           + D  K    ++D      +H A+   +      L+ +        + N    TALHLA 
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG---VSPTIQNRFGCTALHLAC 61

Query: 270 GQGKLRVVEEIISYCPECCELVDGR-GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDK 328
             G +   + + S             G   +H A+          + N   +V  L+   
Sbjct: 62  KFGCVDTAKYLASVGEV----HSLWHGQKPIHLAV----------MANKTDLVVALVEGA 107

Query: 329 DKEGNTPLHLLA 340
            + G  P  LL 
Sbjct: 108 KERGQMPESLLN 119

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (339), Expect = 5e-36
 Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 38/268 (14%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           +          +  A + G       L+E          +G +          + E  T 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVE----------AGYDVRQP------DKENVTL 45

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A  +  +D+VK  I +   V         TPL+ A  +G   M+ ++++     +  
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI-IAELLL 246
              G + +H AA       +V  L+ K +  +   D+ G TPL +A+Y   ++    LLL
Sbjct: 106 DGEGCSCIHLAAQF-GHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163

Query: 247 NSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304
             +     +   D   K TALH A   G   V+  ++       +  + +G + L     
Sbjct: 164 TFN---VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDL--- 216

Query: 305 SFDASDLKHLLNNYPIVRNLINDKDKEG 332
              A   K++     ++ +L   +  +G
Sbjct: 217 ---AKQRKNVW----MINHLQEARQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (326), Expect = 2e-34
 Identities = 51/231 (22%), Positives = 87/231 (37%), Gaps = 30/231 (12%)

Query: 61  LEMCPSLLQS---VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTA 113
            E C  L+++   V          LH AA      +V   I   A               
Sbjct: 22  YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL---------- 71

Query: 114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKM 173
                   D  +T LH A +   L +V  L+K   A P   +G G + +++AA+ G   +
Sbjct: 72  ------GGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSI 124

Query: 174 LTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233
           +  ++     V     +G T L  AA   +S+D  +LLL    S+      +  T LH+A
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

Query: 234 SYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIIS 282
                  +  LLL +    A +   +   + +AL LA  +  + ++  +  
Sbjct: 185 VLAGNTTVISLLLEAG---ANVDAQNIKGE-SALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 219 IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRV 276
           +   D Y    +  A+ +        L+ +      +   D +  +T LH AA   ++ +
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAG---YDVRQPDKE-NVTLLHWAAINNRIDL 57

Query: 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDK 330
           V+  IS      +L        LH+A              +  +V  L+      +  D 
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWA-----TRQ-----GHLSMVVQLMKYGADPSLIDG 107

Query: 331 EGNTPLHLLAA 341
           EG + +H LAA
Sbjct: 108 EGCSCIH-LAA 117

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  133 bits (338), Expect = 8e-36
 Identities = 52/280 (18%), Positives = 94/280 (33%), Gaps = 65/280 (23%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VN +   G  PL +A+  G                                         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGL------------------------------------ET 26

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPSVAH 186
            +   +  +  V+   I +  ++   T+  GET L++AA         + L E       
Sbjct: 27  GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANI 85

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
           +   G+T LHAA    ++  V ++L+  + + +      G TPL  A+      + E L+
Sbjct: 86  QDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144

Query: 247 NSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304
           NS    A +  VD+  K +ALH AA    +     ++       ++ + R    L  A  
Sbjct: 145 NSH---ADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLA-- 197

Query: 305 SFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
              A +      +Y   + L+      +  D     P  +
Sbjct: 198 ---ARE-----GSYETAKVLLDHFANRDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  125 bits (316), Expect = 8e-33
 Identities = 54/263 (20%), Positives = 94/263 (35%), Gaps = 39/263 (14%)

Query: 33  NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQS----VNAK---GDAPLHVAAKC 85
            +  T L +   S       ++E  E    +    +       N     G+  LH+AA+ 
Sbjct: 8   PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY 67

Query: 86  GHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVK 141
             +     L+E       +                    ++   T LH A+   +  V +
Sbjct: 68  SRSDAAKRLLEASADANIQ--------------------DNMGRTPLHAAVSADAQGVFQ 107

Query: 142 ILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN 201
           ILI+       +    G TPL +AA    E ML +++ +   V      GK+ALH AA  
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDND 259
            N++D   +LL K  +     +    TPL  A+       A++LL+     A     D+ 
Sbjct: 168 -NNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF---ANRDITDHM 222

Query: 260 RKMTALHLAAGQGKLRVVEEIIS 282
            +     +A  +    +V  +  
Sbjct: 223 DR-LPRDIAQERMHHDIVRLLDL 244

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  106 bits (266), Expect = 5e-26
 Identities = 37/181 (20%), Positives = 57/181 (31%), Gaps = 21/181 (11%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            N +   G  PLH A       V   LI                           +  T 
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA---------------RMHDGTTP 127

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L  A +     +++ LI    A   + +  G++ L+ AA          +L+N  +   +
Sbjct: 128 LILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 186

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
               +T L  AA    S +  K+LLD   +    TD     P   A     + I  LL  
Sbjct: 187 NNREETPLFLAARE-GSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDL 244

Query: 248 S 248
            
Sbjct: 245 E 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 9e-05
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 19/82 (23%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            + +    + PL +AA+ G       L++                      +T+      
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLD----------HFAN------RDITDHMDRLP 226

Query: 128 LHEAMQHRSLDVVKILIKEDPA 149
              A +    D+V++L  E   
Sbjct: 227 RDIAQERMHHDIVRLLDLEHHH 248

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  132 bits (334), Expect = 1e-35
 Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 59/268 (22%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
            + PLH A        V  L+                  +      + +    LH ++  
Sbjct: 2   SNYPLHQACMENEFFKVQELL---------HSKPSLLLQK------DQDGRIPLHWSVSF 46

Query: 135 RSLDVVKILIKE--DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC--PSVAHEGPS 190
           ++ ++   L+ +  +  +    +  G TP ++A   G  +++  + +    P +      
Sbjct: 47  QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G T LH A       +V + L++   S +   D++   PLH A+      + ELL    K
Sbjct: 107 GVTCLHLAVGK-KWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310
           S     D     T L  A  +G       ++                             
Sbjct: 165 SAVNWQDKQGW-TPLFHALAEGHGDAAVLLVE---------------------------- 195

Query: 311 LKHLLNNYPIVRNLINDKDKEGNTPLHL 338
            K+            +  D +G     +
Sbjct: 196 -KYGAE--------YDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  131 bits (331), Expect = 4e-35
 Identities = 48/220 (21%), Positives = 82/220 (37%), Gaps = 30/220 (13%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALI----EIAKKQPKELESGVESTARQMLGMTNDE 123
           +  K   G  PLH +       + + L+     +                       +D 
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP-----------------DDS 71

Query: 124 KNTALHEAMQHRSLDVVKILIKEDP-AVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
             T  H A    +L+VVK L               G T L++A  + + ++   ++EN  
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
           SV  +    +  LH AA    S+ +++LL    KS +   D+ GWTPL +A        A
Sbjct: 132 SVRIKDKFNQIPLHRAASV-GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190

Query: 243 ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
            LL+    +   +VDN     A  +A      +V +  ++
Sbjct: 191 VLLVEKYGAEYDLVDNKGA-KAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  102 bits (256), Expect = 7e-25
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 22/160 (13%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN--S 248
               LH A +  N    V+ LL  K SL+ + D+ G  PLH++  F  + I   LL+   
Sbjct: 2   SNYPLHQACME-NEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 249 DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVDGRGWNVLHFAMVSFD 307
           + +L    D+    T  H+A   G L VV+ +     +     +  +G   LH A+    
Sbjct: 61  NVNLDDYPDDSGW-TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-- 117

Query: 308 ASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
                     + + + LI        KDK    PLH  AA
Sbjct: 118 --------KWFEVSQFLIENGASVRIKDKFNQIPLH-RAA 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  131 bits (333), Expect = 2e-35
 Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 26/223 (11%)

Query: 69  QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTAL 128
           Q +   GD+ LH+A      ++   +I   K     L               N+ + T L
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPL 49

Query: 129 HEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG 188
           H A+     ++ + L+      P   +  G TPL++A E+G    +  + ++C +     
Sbjct: 50  HLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 189 P------SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
                  +G T LH A+++   + +V+LL+     +  +    G T LH A       + 
Sbjct: 109 ILKATNYNGHTCLHLASIH-GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV 167

Query: 243 ELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
            LLL      A +  V      +   L  G+   R+ +++   
Sbjct: 168 SLLLKCG---ADVNRVTYQGY-SPYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  104 bits (261), Expect = 2e-25
 Identities = 54/285 (18%), Positives = 90/285 (31%), Gaps = 73/285 (25%)

Query: 7   LYEAAAKGEIEPFKEISNVL---GRVVTHNNKN--TILHVNIISRDRETIVSTEFVEQIL 61
           L+ A    E     E+   +      +   N    T LH+ +I+         E  E   
Sbjct: 12  LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITN------QPEIAEA-- 63

Query: 62  EMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ 115
                LL        +   G+ PLH+A + G  + V  L +          S        
Sbjct: 64  -----LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ----------SCTTPHLHS 108

Query: 116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLT 175
           +L  TN   +T LH A  H  L +V++L+           G                   
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVS---------LGA------------------ 141

Query: 176 EILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
           ++  N    A E  +G+TALH A     + D+V LLL      +      G++P      
Sbjct: 142 DV--N----AQEPCNGRTALHLAVDL-QNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWG 193

Query: 236 FDRNIIAELLLNSD-KSLAYIVDNDRKMTALHLAAGQGKLRVVEE 279
                I + L     ++L  + +++                  E+
Sbjct: 194 RPSTRIQQQLGQLTLENLQMLPESE---DEESYDTESEFTEFTED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 221 ETDRYGWTPLHYASYFDRNI----IAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKL 274
           +    G + LH A   +       +   +       A++   +N ++ T LHLA    + 
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL---AFLNFQNNLQQ-TPLHLAVITNQP 58

Query: 275 RVVEEIISY--CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN--YPIVRNLINDKDK 330
            + E ++     P   EL D RG   LH A      + +  L  +   P + +++   + 
Sbjct: 59  EIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 115

Query: 331 EGNTPLHLLAAL 342
            G+T LH LA++
Sbjct: 116 NGHTCLH-LASI 126

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  131 bits (331), Expect = 1e-34
 Identities = 42/289 (14%), Positives = 86/289 (29%), Gaps = 63/289 (21%)

Query: 66  SLLQS--VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
           S L S         G +  + A    +  +V  L+           +G            
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLN----------AGALKNLL------ 60

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
             E    LH+A       +VKIL+          +  G T LY A + G  + +   ++ 
Sbjct: 61  --ENEFPLHQAATLEDTKIVKILLFSG-LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 181 CPSVAHEGPSG-KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
              +   G +G KT+ + A +  N + +V   L +             + +H        
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIP--STFDLAILLSCIHITIKNGHV 174

Query: 240 IIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN 297
            +  LLL+           ++   +  + LA     + +++ +  Y             N
Sbjct: 175 DMMILLLDYM---TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-----------DIN 220

Query: 298 V---LHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLH 337
           +       +          LL++  I + +I             +  + 
Sbjct: 221 IYSANLENV----------LLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  111 bits (281), Expect = 1e-27
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 59/228 (25%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC------GETPLYMAAERGFEKML 174
           +   ++A + A+   ++ +V  L+           G        E PL+ AA     K++
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLN---------AGALKNLLENEFPLHQAATLEDTKIV 78

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW-TPLHYA 233
             +L +    +     G TAL+ A  +  ++  VKL + K    +    + GW T  ++A
Sbjct: 79  KILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHA 136

Query: 234 SYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG 293
              +   I    L+         D    ++ +H+    G + ++  ++ Y          
Sbjct: 137 VMLNDVSIVSYFLSEI---PSTFDLAILLSCIHITIKNGHVDMMILLLDY---------- 183

Query: 294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                          S                N  +     P   LA 
Sbjct: 184 -------------MTS---------------TNTNNSLLFIPDIKLAI 203

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 17/185 (9%), Positives = 53/185 (28%), Gaps = 38/185 (20%)

Query: 71  VNAK----GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN- 125
           +            + A      S+V+  +                        +  +   
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS--------------------EIPSTFDLAI 160

Query: 126 --TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETP-LYMAAERGFEKMLTEILENCP 182
             + +H  +++  +D++ +L+        + N     P + +A +    +ML  + +   
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-- 217

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
                  +  +A     +  +  ++ K++++K               +   +  D  I  
Sbjct: 218 -----DINIYSANLENVLL-DDAEIAKMIIEKHVE-YKSDSYTKDLDIVKNNKLDEIISK 270

Query: 243 ELLLN 247
              L 
Sbjct: 271 NKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G         N      +K  L  K     + D +G +  +YA   +   +   LLN+  
Sbjct: 1   GMDLSRI---NTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAG- 54

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310
             A     +     LH AA     ++V+ ++    +     D +G   L++A+ S     
Sbjct: 55  --ALKNLLE-NEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDS----- 105

Query: 311 LKHLLNNYPIVRNLI------NDKDKEG-NTPLHLLAA 341
                 N   V+  +          K G  T  +  A 
Sbjct: 106 -----GNMQTVKLFVKKNWRLMFYGKTGWKTSFY-HAV 137

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  131 bits (332), Expect = 2e-34
 Identities = 52/276 (18%), Positives = 86/276 (31%), Gaps = 46/276 (16%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
           +AK      +    G  + +   +   +K+ K                   +       A
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKV----------------KFDDGAVFLAA 47

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
                 + V  L++   A     N  G T L+ A       M+  ++EN  ++      G
Sbjct: 48  CSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS 251
              LHAAA     +D+ + L+ +    +G  +  G TPL  A       + +  +N    
Sbjct: 107 WIPLHAAASC-GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-- 162

Query: 252 LAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDL 311
                  D    A             + + S            G   LH A     A+  
Sbjct: 163 -----GVD-IEAARKEEERIMLRDARQWLNSGHIND-VRHAKSGGTALHVA-----AAK- 209

Query: 312 KHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
                   +++ LI      N KD +G TPLH  AA
Sbjct: 210 ----GYTEVLKLLIQARYDVNIKDYDGWTPLH-AAA 240

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  127 bits (321), Expect = 5e-33
 Identities = 57/272 (20%), Positives = 93/272 (34%), Gaps = 47/272 (17%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDE 123
           +N     G   LH A    +  +V  L+E    I +                     ++E
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQP--------------------DNE 105

Query: 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183
               LH A     LD+ + LI +  A   + N  G+TPL +A E   E++L +       
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELL-QNE----- 158

Query: 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE 243
           V  +G   + A           D  + L            + G T LH A+      + +
Sbjct: 159 VNRQGVDIEAARKEEERI-MLRDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 244 LLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHF 301
           LL+ +      +   D D   T LH AA  GK      ++    +  E V+  G      
Sbjct: 217 LLIQAR---YDVNIKDYDGW-TPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDV 271

Query: 302 AMVSFDASDLKHLLNNYPIVRNLINDKDKEGN 333
           A    D   L +L         L ++K ++ +
Sbjct: 272 A----DEDILGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  118 bits (299), Expect = 5e-30
 Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 22/225 (9%)

Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           M + ++           S   ++  + +        +         A   G  + +  +L
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLRLL 60

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
           E    + +    G TALH A ++ +++D+VK L++   + I + D  GW PLH A+    
Sbjct: 61  ERGADINYANVDGLTALHQACID-DNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGY 118

Query: 239 NIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
             IAE L++     A++  V+++   T L +A  +    +++  ++      E       
Sbjct: 119 LDIAEYLISQG---AHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 297 NVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
            ++            + L +             K G T LH +AA
Sbjct: 175 RIMLRDAR-------QWLNSG----HINDVRHAKSGGTALH-VAA 207

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 6e-16
 Identities = 36/246 (14%), Positives = 73/246 (29%), Gaps = 74/246 (30%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILH---VNIISRDRET--IVSTEFVEQIL 61
           L+ AA+ G    + +I+  L           I     V  ++ + +T   ++ E  E + 
Sbjct: 110 LHAAASCG----YLDIAEYL-----------ISQGAHVGAVNSEGDTPLDIAEE--EAME 152

Query: 62  EMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN 121
           E+  + +       +A      +                                     
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIML---------------------------------- 178

Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
                           D  + L              G T L++AA +G+ ++L  +++  
Sbjct: 179 ---------------RDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR 222

Query: 182 PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
             V  +   G T LHAAA      +  ++L++     +   ++ G T    A       +
Sbjct: 223 YDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILGYL 280

Query: 242 AELLLN 247
            EL   
Sbjct: 281 EELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.8 bits (172), Expect = 3e-13
 Identities = 32/155 (20%), Positives = 43/155 (27%), Gaps = 48/155 (30%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
            K           S   ++  + K+K         G   L   S  D       LL    
Sbjct: 8   QKRNEQLKRWI-GSETDLEPPVVKRKK-TKVKFDDGAVFLAACSSGDTEE-VLRLLERG- 63

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A I   + D  +TALH A     + +V+ ++             G N           
Sbjct: 64  --ADINYANVD-GLTALHQACIDDNVDMVKFLVE-----------NGAN----------- 98

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC 343
                           IN  D EG  PLH  AA C
Sbjct: 99  ----------------INQPDNEGWIPLH-AAASC 116

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  126 bits (320), Expect = 1e-33
 Identities = 49/217 (22%), Positives = 86/217 (39%), Gaps = 27/217 (12%)

Query: 72  NAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTAL 128
           N     G+  LH+AA+   +     L+          E+  ++  +      ++   T L
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLL----------EASADANIQ------DNMGRTPL 62

Query: 129 HEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG 188
           H A+   +  V +ILI+       +    G TPL +AA    E ML +++ +   V    
Sbjct: 63  HAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122

Query: 189 PSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS 248
             GK+ALH AA   N++D   +LL    +     +    TPL  A+       A++LL+ 
Sbjct: 123 DLGKSALHWAAAV-NNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH 180

Query: 249 DKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
               A     D+  +     +A  +    +V  +  Y
Sbjct: 181 F---ANRDITDHMDR-LPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  121 bits (307), Expect = 6e-32
 Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 136 SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL 195
           +  V+   I +  ++   T+  GET L++AA          +LE       +   G+T L
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL 62

Query: 196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI 255
           HAA    ++  V ++L+  + + +      G TPL  A+      + E L+NS    A +
Sbjct: 63  HAAVSA-DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH---ADV 118

Query: 256 --VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKH 313
             VD+  K +ALH AA    +     ++          + R    L  A     A +   
Sbjct: 119 NAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLA-----ARE--- 168

Query: 314 LLNNYPIVRNLI------NDKDKEGNTPLHL 338
              +Y   + L+      +  D     P  +
Sbjct: 169 --GSYETAKVLLDHFANRDITDHMDRLPRDI 197

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  107 bits (269), Expect = 1e-26
 Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 21/179 (11%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            N +   G  PLH A       V   LI                           +  T 
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA---------------RMHDGTTP 95

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L  A +     +++ LI    A   + +  G++ L+ AA          +L+N  +   +
Sbjct: 96  LILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ 154

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
               +T L  AA    S +  K+LLD   +    TD     P   A     + I  LL 
Sbjct: 155 NNREETPLFLAARE-GSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 6e-20
 Identities = 37/147 (25%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDR 260
           ++  V+   + +  SL  +TDR G T LH A+ + R+  A+ LL +    A     DN  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMG 58

Query: 261 KMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPI 320
           + T LH A       V + +I       +     G   L  A            L    +
Sbjct: 59  R-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA----------RLAVEGM 107

Query: 321 VRNLI------NDKDKEGNTPLHLLAA 341
           + +LI      N  D  G + LH  AA
Sbjct: 108 LEDLINSHADVNAVDDLGKSALH-WAA 133

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  127 bits (321), Expect = 4e-33
 Identities = 52/283 (18%), Positives = 95/283 (33%), Gaps = 47/283 (16%)

Query: 81  VAAKCGHASVVTALIE----IAKKQPKEL------ESGVESTARQML---GMTNDEKN-- 125
           + +   H    + L+     +A    K+        +G        L    +  D  +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
           + +HEA  H     ++ LI +  AV   T     +PL+ A   G    +  +L++   V 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITAD-HVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
                  T L  A V+  S D V LLL    S+  + +    +P+H A+          L
Sbjct: 120 GVTADWHTPLFNACVS-GSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 176

Query: 246 LNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV--DGRGWNVLHF 301
           +        I    +    T L+LA    +   V++++    +    V       + LH 
Sbjct: 177 IAYG---GNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD----VNQGKGQDSPLHA 228

Query: 302 AMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
            +             +  +   L+        K+ EG  P+ L
Sbjct: 229 VV----------RTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  126 bits (320), Expect = 4e-33
 Identities = 44/212 (20%), Positives = 77/212 (36%), Gaps = 30/212 (14%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VN       +PLH A   GH S V  L++           G +            + +T 
Sbjct: 85  VNIITADHVSPLHEACLGGHLSCVKILLK----------HGAQVNGV------TADWHTP 128

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L  A    S D V +L++   A     +    +P++ AA RG  + +  ++    ++ H+
Sbjct: 129 LFNACVSGSWDCVNLLLQHG-ASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHK 186

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
                T L+ A  N      VK LL+    +     +   +PLH         +A LL++
Sbjct: 187 ISHLGTPLYLACEN-QQRACVKKLLESGADV--NQGKGQDSPLHAVVRTASEELACLLMD 243

Query: 248 SDKSLAYI--VDNDRKMTALHLAAGQGKLRVV 277
                A     + + K   + L   +  L  +
Sbjct: 244 FG---ADTQAKNAEGK-RPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.3 bits (194), Expect = 3e-16
 Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 37/190 (19%)

Query: 164 MAAERGFEKMLTEILE-----NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL 218
           M +        + ++              G  G               +   L+    S 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFP-GIRLLSNPLMGDAVS- 58

Query: 219 IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRV 276
                   W+P+H A+     +    L++       +  +  D  ++ LH A   G L  
Sbjct: 59  -------DWSPMHEAAIHGHQLSLRNLISQG---WAVNIITADH-VSPLHEACLGGHLSC 107

Query: 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN-----DKDKE 331
           V+ ++ +  +    V       L  A VS           ++  V  L+        + +
Sbjct: 108 VKILLKHGAQ-VNGVTADWHTPLFNACVS----------GSWDCVNLLLQHGASVQPESD 156

Query: 332 GNTPLHLLAA 341
             +P+H  AA
Sbjct: 157 LASPIH-EAA 165

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  122 bits (310), Expect = 2e-32
 Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 30/220 (13%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
             +  A L  A +     V   L +             +          + E NT L+ A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDT----------TYQVDEV------DTEGNTPLNIA 46

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVAHEGPS 190
           + +  +++ K LI    A     N   ++P   A  +G  ++L  +L++  P +      
Sbjct: 47  VHNNDIEIAKALIDRG-ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI-----IAELL 245
           G  AL  AA     ID VKLLL+  +  I   + +G+T L  A            I +LL
Sbjct: 106 GGNALIPAAEK-GHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

Query: 246 LNS--DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           + +  D+S+    DN  + TA+  A  +G   + + +  Y
Sbjct: 165 MENGADQSIK---DNSGR-TAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (296), Expect = 1e-30
 Identities = 35/227 (15%), Positives = 66/227 (29%), Gaps = 50/227 (22%)

Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           M   E    L  A Q  +  V +IL           +  G TPL +A      ++   ++
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
           +    +  +     +    A       +++  +L      + + +RYG   L  A+    
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 239 NIIAELLLNSDKSLAYI--VDNDRKMTALHLAA-----GQGKLRVVEEIISYCPECCELV 291
               +LLL  +     I   ++    TAL  A       Q    +V+ ++          
Sbjct: 119 IDNVKLLL--EDGREDIDFQNDFGY-TALIEAVGLREGNQLYQDIVKLLME--------- 166

Query: 292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
              G +                            + KD  G T +  
Sbjct: 167 --NGAD---------------------------QSIKDNSGRTAMDY 184

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (264), Expect = 3e-26
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 27/185 (14%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           V+     G+ PL++A       +  ALI+  A    +                 N   ++
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-----------------NSISDS 74

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVA 185
               A      +++  ++K         N  G   L  AAE+G    +  +LE+    + 
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134

Query: 186 HEGPSGKTALHAAAVNINS----IDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
            +   G TAL  A           D+VKLL++   +     D  G T + YA+      I
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEI 193

Query: 242 AELLL 246
           +++L 
Sbjct: 194 SKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 30/105 (28%)

Query: 71  VNAK---GDAPLHVAAKCGHASVV-------------------TALIEIAKKQPKELESG 108
           +N     G   L  AA+ GH   V                   TALIE    +       
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGN--QL 156

Query: 109 VESTARQMLG------MTNDEKNTALHEAMQHRSLDVVKILIKED 147
            +   + ++       + ++   TA+  A Q    ++ KIL + +
Sbjct: 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  123 bits (310), Expect = 2e-32
 Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 30/230 (13%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G   +  A           L      +  ++                D  +T   +    
Sbjct: 12  GQVKVFRALYTFEPRTPDELY----IEEGDII------------YITDMSDTNWWKGTSK 55

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
               ++      +           + PL+ AA+RG    L E L+N   V     +G TA
Sbjct: 56  GRTGLIPSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTA 109

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN--SDKSL 252
           L+ A       D+V++L  +    + + ++ G T LH A++     I +LLL   +    
Sbjct: 110 LYWACHG-GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD- 167

Query: 253 AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
             + + ++K  A  +A       ++++          L +   +     +
Sbjct: 168 --LRNIEKK-LAFDMATNAACASLLKKKQGTDAV-RTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (293), Expect = 4e-30
 Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 41/212 (19%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
           +    D         G   ++ +     +                      +  +  LHE
Sbjct: 41  ITDMSDTNWWKGTSKGRTGLIPSNYVAEQ---------------------AESIDNPLHE 79

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP- 189
           A +  +L  ++  +          +  G T LY A   G + +  E+L            
Sbjct: 80  AAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWACHGGHKDI-VEML-----FTQPNIE 132

Query: 190 ------SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE 243
                  G TALHAAA      D+V+LLL K        +         A+      + +
Sbjct: 133 LNQQNKLGDTALHAAAWK-GYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLK 190

Query: 244 LLLNSDKSLAYIVDNDRK-MTALHLAAGQGKL 274
               +D   A    ++ +       +  +   
Sbjct: 191 KKQGTD---AVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 96.9 bits (242), Expect = 4e-23
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 29/196 (14%)

Query: 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKL 210
           P      G+  ++ A      +   E+      + +      T             ++  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-GRTGLIPS 63

Query: 211 LLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLA 268
               ++            PLH A+           L++      +  +D     TAL+ A
Sbjct: 64  NYVAEQ------AESIDNPLHEAAKRGNLSWLRECLDNR---VGVNGLDKAGS-TALYWA 113

Query: 269 AGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI--- 325
              G   +VE + +         +  G   LH A     A           IV+ L+   
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA-----AWK-----GYADIVQLLLAKG 163

Query: 326 ---NDKDKEGNTPLHL 338
              + ++ E      +
Sbjct: 164 ARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 29/231 (12%), Positives = 59/231 (25%), Gaps = 68/231 (29%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
            ++  +KG       +           + +  LH      +         + + L+    
Sbjct: 49  WWKGTSKGRTG----LIPSNYVAEQAESIDNPLHEAAKRGNLSW------LRECLDNRVG 98

Query: 67  LLQSVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDE 123
               VN     G   L+ A   GH  +V  L           +  +E   +      N  
Sbjct: 99  ----VNGLDKAGSTALYWACHGGHKDIVEMLFT---------QPNIELNQQ------NKL 139

Query: 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183
            +TALH A      D+V++L+ +  A     N   +    MA                  
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAA-------------- 184

Query: 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
                                  ++K       ++   ++   +     + 
Sbjct: 185 --------------------CASLLKKKQG-TDAVRTLSNAEDYLDDEDSD 214

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  122 bits (309), Expect = 5e-32
 Identities = 44/275 (16%), Positives = 73/275 (26%), Gaps = 52/275 (18%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
             +G     +  K GH+        IA                        E  T    A
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAAD-------------------VVSEYETPWWTA 52

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV-AHEGPS 190
            +      +  L+++      + +  G T L   A  G +K +  + E    +   +   
Sbjct: 53  ARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G TALH AA      +VV+ L++     I   D  G T L  A    +       +    
Sbjct: 111 GLTALHMAAGY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFG- 167

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310
               I     K+  +          V E +            G+G +V +          
Sbjct: 168 --RRI--GLEKVINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWK----- 209

Query: 311 LKHLLNNYPIVRNLI----NDKDKEGNTPLHLLAA 341
                +              D  K+    L    A
Sbjct: 210 -----DGGDCEWVKGVHVAEDVAKDYEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  103 bits (259), Expect = 4e-25
 Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 32/209 (15%)

Query: 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
           T G G     +  + G              V  E    +T    AA        +  LL+
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK-ADEQALSQLLE 66

Query: 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQ 271
            +   +   D  G T L + +    +    LL  +    A +   D    +TALH+AAG 
Sbjct: 67  DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAG---ADLDHRDMRGGLTALHMAAGY 121

Query: 272 GKLRVVEEIISYCPECCELVDGRGWNVLHFA-------MVSF--------DASDLKHLL- 315
            +  VVE ++    +  E+ D RG   L  A                       + ++L 
Sbjct: 122 VRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180

Query: 316 ---NNYPIVRNLINDKDKEGNTPLHLLAA 341
                Y  V   I +K  +G    +L+  
Sbjct: 181 GQVFEYAEVDE-IVEKRGKGKDVEYLVRW 208

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 91.5 bits (228), Expect = 5e-21
 Identities = 37/213 (17%), Positives = 58/213 (27%), Gaps = 48/213 (22%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           V+A    G   L   A  G    V  L E  A    +++  G                 T
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG----------------LT 113

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
           ALH A  +   +VV+ L++   A     +  G T L +A E                   
Sbjct: 114 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTP------------- 159

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSL-----IGETDRYGWTPLHYASYFDRNII 241
                   +      I    V+ +L  +         I E    G    +   + D    
Sbjct: 160 ----KGNPMQFGR-RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 242 AELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL 274
             +        A  V  D +   L  A  +  +
Sbjct: 215 EWVKGVHV---AEDVAKDYE-DGLEYAVAESVI 243

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  122 bits (308), Expect = 5e-32
 Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 46/236 (19%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
            ++PL +AAK      ++ L+            G E   R           TALH A  +
Sbjct: 3   WESPLLLAAKENDVQALSKLL---------KFEGCEVHQR------GAMGETALHIAALY 47

Query: 135 RSLDVVKILIKEDPAVPY----STNGCGETPLYMAAERGFEKMLTEIL------------ 178
            +L+   +L++  P + +    S    G+T L++A       +    L            
Sbjct: 48  DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL-VRALLARGASVSARAT 106

Query: 179 --ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF 236
                    +    G+  L  AA    S ++V+LL++     I   D  G T LH     
Sbjct: 107 GSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQ 164

Query: 237 DRNIIA----ELLLNSD-----KSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
                A     LLL+ D     KSL  + +N    T   LA  +G + + + ++  
Sbjct: 165 PNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  105 bits (264), Expect = 5e-26
 Identities = 45/206 (21%), Positives = 75/206 (36%), Gaps = 25/206 (12%)

Query: 158 GETPLYMAAERGFEKMLTEIL-ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK-- 214
            E+PL +AA+    + L+++L      V   G  G+TALH AA+  ++++   +L++   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAP 61

Query: 215 --KKSLIGETDRYGWTPLHYASYFDRNIIAELLL-----------NSDKSLAYIVDNDRK 261
                 +      G T LH A       +   LL            S             
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS----FDASDLKHLLNN 317
              L  AA  G   +V  +I +  +     D  G  VLH  ++     F       LL+ 
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRA-QDSLGNTVLHILILQPNKTFACQMYNLLLSY 180

Query: 318 --YPIVRNLINDKDKEGNTPLHLLAA 341
                +++L    + +G TP   LA 
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFK-LAG 205

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =   99 bits (250), Expect = 5e-24
 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 44/205 (21%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDE 123
           V+ +   G+  LH+AA   +      L+E    +  +                      E
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS---------------ELYE 74

Query: 124 KNTALHEAMQHRSLDVVKILIK------------EDPAVPYSTNGCGETPLYMAAERGFE 171
             TALH A+ ++++++V+ L+                  P++    GE PL  AA  G E
Sbjct: 75  GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134

Query: 172 KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVV----KLLLDK-----KKSLIGET 222
           +++  ++E+   +  +   G T LH   +   +         LLL        KSL    
Sbjct: 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQ-PNKTFACQMYNLLLSYDGGDHLKSLELVP 193

Query: 223 DRYGWTPLHYASYFDRNIIAELLLN 247
           +  G TP   A      ++ + L+ 
Sbjct: 194 NNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 41/145 (28%)

Query: 225 YGWTPLHYASYF-DRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEII 281
              +PL  A+   D   +++LL         +       + TALH+AA    L     ++
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGE-TALHIAALYDNLEAAMVLM 57

Query: 282 SYCPECCELV----DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDK- 330
              PE            G   LH A+++           N  +VR L+      + +   
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVIN----------QNVNLVRALLARGASVSARATG 107

Query: 331 ------------EGNTPLHLLAALC 343
                        G  PL   AA  
Sbjct: 108 SVFHYRPHNLIYYGEHPLS-FAACV 131

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  115 bits (292), Expect = 3e-30
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 8/161 (4%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
           + ++H+      LD +K  +++   +    +  G TPL  A+  G  + +  +LE     
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
                  ++AL  A+      D+V LLL++    I   D  G TPL YA   +     E 
Sbjct: 63  HILAKERESALSLASTG-GYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 245 LLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
           LL      A +    +    T + LA   G  +V + I ++
Sbjct: 121 LLARG---ADLTTEADSG-YTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  101 bits (255), Expect = 2e-25
 Identities = 31/178 (17%), Positives = 60/178 (33%), Gaps = 34/178 (19%)

Query: 78  PLHVAAKCGHASVVTALIE-----IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM 132
            +H  A  G    +   +      + K                     ++   T L  A 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKP--------------------DERGFTPLIWAS 44

Query: 133 QHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE---KMLTEILENCPSVAHEGP 189
               ++ V+ L++   A P+      E+ L +A+  G+     +L   LE    +     
Sbjct: 45  AFGEIETVRFLLEWG-ADPHILAKERESALSLASTGGYTDIVGLL---LERDVDINIYDW 100

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
           +G T L  A    N +  V+ LL +    +      G+TP+  A       + +++ N
Sbjct: 101 NGGTPLLYAVRG-NHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  101 bits (254), Expect = 3e-25
 Identities = 37/156 (23%), Positives = 60/156 (38%), Gaps = 24/156 (15%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS-- 248
              ++H  A     +D +K  L K  +L+ + D  G+TPL +AS F        LL    
Sbjct: 2   DSLSIHQLAAQ-GELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 249 DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
           D     I+  +R  +AL LA+  G   +V  ++    +   + D  G   L +A      
Sbjct: 61  DPH---ILAKER-ESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYA-----V 110

Query: 309 SDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
                  N+   V  L+        +   G TP+ L
Sbjct: 111 RG-----NHVKCVEALLARGADLTTEADSGYTPMDL 141

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 33/187 (17%), Positives = 56/187 (29%), Gaps = 26/187 (13%)

Query: 158 GETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK 216
               ++  A +G    L E L      V      G T L  A+     I+ V+ LL+   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGA 60

Query: 217 SLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKL 274
                  +   + L  AS      I  LLL  D     I   D +   T L  A     +
Sbjct: 61  D-PHILAKERESALSLASTGGYTDIVGLLLERD---VDINIYDWNG-GTPLLYAVRGNHV 115

Query: 275 RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDK 328
           + VE +++   +        G+  +        A  L +      + + +          
Sbjct: 116 KCVEALLARGAD-LTTEADSGYTPMDL------AVALGYR----KVQQVIENHILKLFQS 164

Query: 329 DKEGNTP 335
           +     P
Sbjct: 165 NLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 22/162 (13%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VN     G  PL  A+  G    V  L+          E G +            E+ +A
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLL----------EWGADPHIL------AKERESA 72

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           L  A      D+V +L++ D       +  G TPL  A      K +  +L     +  E
Sbjct: 73  LSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229
             SG T +  A        V +++ +     + +++     P
Sbjct: 132 ADSGYTPMDLAVAL-GYRKVQQVIEN-HILKLFQSNLVPADP 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (288), Expect = 1e-29
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 31/216 (14%)

Query: 70  SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH 129
            ++  G+    +  +      +  L                          +    T L 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNY----------------------RDSYNRTPLM 40

Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
            A      + +  L++         +  G T L  A +     +  ++L    +V  +  
Sbjct: 41  VACMLGMENAIDKLVENF-DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
           SGKT L  + +     ++   LL+   + + + +  G TPL  AS + R+ I + LL   
Sbjct: 100 SGKTPLMWSIIF-GYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 250 KSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
              A I   D     TA   A   G+  V++     
Sbjct: 158 ---ADISARDLTGL-TAEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  105 bits (264), Expect = 3e-26
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 55/221 (24%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-E 179
           +           +      +  L           +    TPL +A   G E    + L E
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENA-IDKLVE 56

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
           N   +  +   G TAL  A  N N + + + LL K  S +   D  G TPL ++  F  +
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKG-SNVNTKDFSGKTPLMWSIIFGYS 114

Query: 240 IIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN 297
            ++  LL      A +   + + + T L +A+  G+  +V++++             G +
Sbjct: 115 EMSYFLLEHG---ANVNDRNLEGE-TPLIVASKYGRSEIVKKLLEL-----------GAD 159

Query: 298 VLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                                      I+ +D  G T    
Sbjct: 160 ---------------------------ISARDLTGLTAEAS 173

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  104 bits (261), Expect = 7e-26
 Identities = 45/219 (20%), Positives = 82/219 (37%), Gaps = 42/219 (19%)

Query: 33  NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAK---GDAPLHVAAKCGHAS 89
            N   +            I   + + Q L+         N +      PL VA   G  +
Sbjct: 6   KNGEIVEK----------IKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMEN 49

Query: 90  VVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP 148
            +  L+E   K + K                 + E +TAL  A+++  L + + L+ +  
Sbjct: 50  AIDKLVENFDKLEDK-----------------DIEGSTALIWAVKNNRLGIAEKLLSKG- 91

Query: 149 AVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPSVAHEGPSGKTALHAAAVNINSIDV 207
           +   + +  G+TPL  +   G+ +M +  L E+  +V      G+T L  A+      ++
Sbjct: 92  SNVNTKDFSGKTPLMWSIIFGYSEM-SYFLLEHGANVNDRNLEGETPLIVASKY-GRSEI 149

Query: 208 VKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
           VK LL+   + I   D  G T    A  F R  + ++  
Sbjct: 150 VKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.8 bits (219), Expect = 3e-20
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 32/159 (20%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G+          +    +  L + +       D Y  TPL  A         + L+ +  
Sbjct: 8   GEIVEKIKDEK-SINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLVENF- 58

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
               +   D +   TAL  A    +L + E+++S         D  G   L ++++    
Sbjct: 59  --DKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIF--- 111

Query: 309 SDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
                      +   L+      ND++ EG TPL  +A+
Sbjct: 112 -------GYSEMSYFLLEHGANVNDRNLEGETPLI-VAS 142

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 77.0 bits (191), Expect = 1e-16
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 25/152 (16%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           +  K   G   L  A K     +   L+   +    K                 +    T
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-----------------DFSGKT 103

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPSVA 185
            L  ++     ++   L++   A     N  GETPL +A++ G  ++  + L E    ++
Sbjct: 104 PLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEI-VKKLLELGADIS 161

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
               +G TA  +A +     +V+K+  + +++
Sbjct: 162 ARDLTGLTAEASARIF-GRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.4 bits (166), Expect = 3e-13
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 28/128 (21%)

Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           D+ G            N   + L N         D+  + T L +A   G    +++++ 
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNR-TPLMVACMLGMENAIDKLVE 56

Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP-IVRNLI------NDKDKEGNTP 335
              +  E  D  G   L +A+            NN   I   L+      N KD  G TP
Sbjct: 57  NFDK-LEDKDIEGSTALIWAV-----------KNNRLGIAEKLLSKGSNVNTKDFSGKTP 104

Query: 336 LHLLAALC 343
           L   + + 
Sbjct: 105 LM-WSIIF 111

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  112 bits (282), Expect = 4e-29
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
           + ++H+      +  +   I+++  V   T+  G TPL  AA  G   ++  +L+N    
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
              G   ++AL  A       D+VK+LLD     + E D  G TPL YA + +     ++
Sbjct: 63  QLLGKGRESALSLACSK-GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKM 120

Query: 245 LLN--SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           LL   +D ++     +     ++ LA   G   V + I S+
Sbjct: 121 LLESGADPTIE---TDSGY-NSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  105 bits (264), Expect = 1e-26
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
               +H  A  G    +   IE                        ++E  T L  A  H
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIE----------QENVINHT------DEEGFTPLMWAAAH 46

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE---KMLTEILENCPSVAHEGPSG 191
             + VV+ L++   A P       E+ L +A  +G+    KML   L+    V     +G
Sbjct: 47  GQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKGYTDIVKML---LDCGVDVNEYDWNG 102

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
            T L  A    N +  VK+LL+   +        G+  +  A       + +++ +
Sbjct: 103 GTPLLYAVHG-NHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.8 bits (245), Expect = 4e-24
 Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 25/157 (15%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS- 248
           +   ++H  A     +  +   ++++ ++I  TD  G+TPL +A+   +  + E LL + 
Sbjct: 2   ANSLSVHQLAAQ-GEMLYLATRIEQE-NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 249 -DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
            D     ++   R  +AL LA  +G   +V+ ++    +     D  G   L +A     
Sbjct: 60  ADPQ---LLGKGR-ESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYA----- 109

Query: 308 ASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
                   N+   V+ L+        +   G   + L
Sbjct: 110 VHG-----NHVKCVKMLLESGADPTIETDSGYNSMDL 141

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 60.1 bits (147), Expect = 6e-11
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
                   ++ L +A   G+  +V  L+          + GV+          +    T 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLL----------DCGVDVNEY------DWNGGTP 105

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
           L  A+    +  VK+L++   A P      G   + +A   G
Sbjct: 106 LLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALG 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (280), Expect = 1e-28
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 11/167 (6%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL- 178
           + +     +    +  +   V++ +          +  G +PL+ A   G   +  E+L 
Sbjct: 2   SPEFM-DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV-VEMLI 59

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
                +        T LH AA +    D+V+ LL  K   I   + +G  PLHYA ++ +
Sbjct: 60  MRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ 117

Query: 239 NIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
           + +AE L+ +    A +   +   +   +  A    +  + E     
Sbjct: 118 DQVAEDLVANG---ALVSICNKYGE-MPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  109 bits (274), Expect = 9e-28
 Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 26/201 (12%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
               +    + G+A  V   ++  +    +                +D   + LH A + 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLNQ---------------GDDHGFSPLHWACRE 49

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
               VV++LI    A     N   +TPL++AA  G   ++ ++L+    +      G   
Sbjct: 50  GRSAVVEMLIMRG-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY 254
           LH A        V + L+    +L+   ++YG  P+  A    R ++ E           
Sbjct: 109 LHYACFW-GQDQVAEDLV-ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG---QN 163

Query: 255 IVDNDRKMTALHLAAGQGKLR 275
           +  N            +G  R
Sbjct: 164 L--NR---IPYKDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  104 bits (262), Expect = 4e-26
 Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 24/156 (15%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               +        +   V+L LD  ++ + + D +G++PLH+A    R+ + E+L+    
Sbjct: 5   FMDDIFTQCRE-GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG- 62

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A I  ++     T LHLAA  G   +V++++ Y  +    V+  G   LH+A   F  
Sbjct: 63  --ARINVMNRGDD-TPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA--CFW- 115

Query: 309 SDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
                      +  +L+      +  +K G  P+  
Sbjct: 116 -------GQDQVAEDLVANGALVSICNKYGEMPVDK 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           +N      D PLH+AA  GH  +V  L+          +   +  A       N+  N  
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLL----------QYKADINAV------NEHGNVP 108

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           LH A       V + L+    A+    N  GE P+  A      ++L E  
Sbjct: 109 LHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPL-RELLRERA 157

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (279), Expect = 7e-28
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 15/226 (6%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
             +L    +          I     V    N      L  ++  G   ++  I+      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP 63

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
           +     G TALH A       ++VK L+      +   D  GWTPLH A+  +   + + 
Sbjct: 64  SLPNDEGITALHNAVCA-GHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 245 LLNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA- 302
           L+ S  ++  +  +D +          +G  +  + +     +   +++      L    
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYE 180

Query: 303 -----MVSFDASDLKHLLN--NYPIVRNLI-NDKDKEGNTPLHLLA 340
                 +     D   +++  +   +        DKEG  P +LL 
Sbjct: 181 PQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (271), Expect = 8e-27
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 29/195 (14%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
           G+  L         K  +E + +   V    P     L  +++     D+V+ ++ +   
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALLLDSSLE-GEFDLVQRIIYEVDD 62

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLR 275
                +  G T LH A       I + L+        +   D+D   T LH AA    ++
Sbjct: 63  -PSLPNDEGITALHNAVCAGHTEIVKFLVQFG---VNVNAADSDGW-TPLHCAASCNNVQ 117

Query: 276 VVEEIISY--CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP-IVRNLI------N 326
           V + ++            D +        M              Y    + L        
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEM-----------EEGYTQCSQFLYGVQEKMG 166

Query: 327 DKDKEGNTPLHLLAA 341
             +K     L     
Sbjct: 167 IMNKGVIYALWDYEP 181

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.5 bits (241), Expect = 9e-23
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 29/209 (13%)

Query: 71  VNAK--GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTA 127
           V       A L  ++  G   +V  +I                          NDE  TA
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-----------------NDEGITA 73

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA-- 185
           LH A+     ++VK L++       + +  G TPL+ AA     ++   ++E+  +V   
Sbjct: 74  LHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132

Query: 186 -HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
            +                      + L   ++  +G  ++     L            EL
Sbjct: 133 TYSDMQTAADKCEEMEE-GYTQCSQFLYGVQEK-MGIMNKGVIYALWDYEP---QNDDEL 187

Query: 245 LLNSDKSLAYIVDNDRKMTALHLAAGQGK 273
            +     +  I   D        A    K
Sbjct: 188 PMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 29/159 (18%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN-- 247
           +G+ +L       N        +     +  + +      L  +S      + + ++   
Sbjct: 4   TGQVSLPPGKRT-NLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
            D SL     ND  +TALH A   G   +V+ ++ +        D  GW  LH A     
Sbjct: 61  DDPSLP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCA----- 110

Query: 308 ASDLKHLLNNYPIVRNLI---------NDKDKEGNTPLH 337
           AS      NN  + + L+            D +      
Sbjct: 111 ASC-----NNVQVCKFLVESGAAVFAMTYSDMQTAADKC 144

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 32/184 (17%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            +     G   LH A   GH  +V  L++           GV   A       + +  T 
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF----------GVNVNAA------DSDGWTP 106

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTN--GCGETPLYMAAERGFEKMLTEILENCPSVA 185
           LH A    ++ V K L++   AV   T              E G+ +    +      + 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 186 HEGPSGKTALHAAA------VNINSIDVVKLL----LDKKKSLIGE-TDRYGWTPLHYAS 234
                   AL          + +   D + ++     D+ +       D+ G+ P +   
Sbjct: 167 IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226

Query: 235 YFDR 238
            + R
Sbjct: 227 LYPR 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 21/127 (16%)

Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           +  G   L      +        +        +  N   +  L  ++ +G+  +V+ II 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPL 336
              +   L +  G   LH A              +  IV+ L+      N  D +G TPL
Sbjct: 59  EVDD-PSLPNDEGITALHNA-----VCA-----GHTEIVKFLVQFGVNVNAADSDGWTPL 107

Query: 337 HLLAALC 343
           H  AA C
Sbjct: 108 H-CAASC 113

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 1e-27
 Identities = 48/276 (17%), Positives = 80/276 (28%), Gaps = 64/276 (23%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
                  +  A    +   + +L+   ++  K      +S  +       +   T L +A
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR---LTDSEFKD-----PETGKTCLLKA 61

Query: 132 M---QHRSLDVVKILIKEDP----------AVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           M    +   D + +L+              A    +   G+T L++A ER    +   +L
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTL-VTLL 120

Query: 179 ---------------ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL--IGE 221
                                      G+  L  AA   N + +VK LL        I  
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT-NQLAIVKFLLQNSWQPADISA 179

Query: 222 TDRYGWTPLHYASYFDRNIIAELL---------------LNSDKSLAYIVDNDRKMTALH 266
            D  G T LH       N +                   L+    L  I +    +T L 
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG-LTPLA 238

Query: 267 LAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
           LAA  GK+ V+  I+          +       H A
Sbjct: 239 LAASSGKIGVLAYILQ--------REIHEPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  109 bits (275), Expect = 4e-27
 Identities = 49/300 (16%), Positives = 85/300 (28%), Gaps = 80/300 (26%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           +++A A+   +  + +   L R             +   +D ET                
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRL-------TDSEFKDPET---------------- 53

Query: 67  LLQSVNAKGDAPLHVA---AKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTND 122
                   G   L  A      G    +  L+++  K    +       T     G T  
Sbjct: 54  --------GKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQT-- 103

Query: 123 EKNTALHEAMQHRSLDVVKILIK-------------EDPAVPYSTNGCGETPLYMAAERG 169
               ALH A++ R++ +V +L++                         GE PL +AA   
Sbjct: 104 ----ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159

Query: 170 FE---KMLTEILENCPSVAHEGPSGKTALHAAAVNIN--------SIDVVKLLLDKKKSL 218
                K L +       ++     G T LHA     +           +   +L     L
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKL 219

Query: 219 IGE------TDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG 272
                    T+R G TPL  A+   +  +   +L  +           +    H AA   
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---------EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  100 bits (251), Expect = 6e-24
 Identities = 45/233 (19%), Positives = 74/233 (31%), Gaps = 53/233 (22%)

Query: 158 GETPLYMAAERGFEKMLTEILE--------NCPSVAHEGPSGKTALHAAAVNI--NSIDV 207
               ++ A  +   + L  +L            S   +  +GKT L  A +N+     D 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 208 VKLLLDKKKSL----------IGETDRYGWTPLHYASYFDRNIIAELLL----------- 246
           + LLLD  +              ++   G T LH A       +  LL+           
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 247 -NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCEL--VDGRGWNVLHFA- 302
            +  K              L LAA   +L +V+ ++    +  ++   D  G  VLH   
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 303 --------MVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHLLAA 341
                      F  S    +L    +   L          +++G TPL  LAA
Sbjct: 193 EVADNTVDNTKFVTSMYNEILI---LGAKLHPTLKLEEITNRKGLTPLA-LAA 241

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 50/160 (31%)

Query: 221 ETDRYGWTPLHYA-SYFDRNIIAELLLNSDKSLAYIVDNDRK-----MTALHLA---AGQ 271
               Y    +  A +  +   +  LL    +S   + D++ K      T L  A      
Sbjct: 8   PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHN 67

Query: 272 GKLRVVEEIISY----------CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
           G+   +  ++                      +G   LH A+             N  +V
Sbjct: 68  GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER----------RNMTLV 117

Query: 322 RNLI------NDKDKE--------------GNTPLHLLAA 341
             L+                          G  PL  LAA
Sbjct: 118 TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS-LAA 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  107 bits (270), Expect = 2e-27
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 9/161 (5%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
              L EA +    D V+IL+    A   + +  G TPL++AA  G  +++  +L+N   V
Sbjct: 15  GKKLLEAARAGRDDEVRILMANG-ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
                +G T L  AA+    +++V++LL      +   D  G TPLH A+ F    I E+
Sbjct: 74  NAVDHAGMTPLRLAALF-GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEV 131

Query: 245 LLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
           LL +    A +   D   K TA  ++   G   + E +   
Sbjct: 132 LLKNG---ADVNAQDKFGK-TAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  104 bits (263), Expect = 2e-26
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 72  NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEA 131
            +     L  AA+ G    V  L+           +G +  A       +    T LH A
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMA----------NGADVNAE------DASGWTPLHLA 54

Query: 132 MQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG 191
             +  L++V++L+K   A   + +  G TPL +AA  G  +++  +L+N   V      G
Sbjct: 55  AFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEG 113

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
            T LH AA+    +++V++LL K  + +   D++G T    +       +AE+L 
Sbjct: 114 HTPLHLAAMF-GHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.0 bits (235), Expect = 1e-22
 Identities = 47/183 (25%), Positives = 69/183 (37%), Gaps = 46/183 (25%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
               L  AA  G +  +  ++ N   V  E  SG T LH AA N   +++V++LL     
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGAD 72

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLR 275
            +   D  G TPL  A+ F    I E+LL +    A +   D +   T LHLAA  G L 
Sbjct: 73  -VNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---ADVNANDMEGH-TPLHLAAMFGHLE 127

Query: 276 VVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTP 335
           +VE ++             G +                           +N +DK G T 
Sbjct: 128 IVEVLLK-----------NGAD---------------------------VNAQDKFGKTA 149

Query: 336 LHL 338
             +
Sbjct: 150 FDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 45/118 (38%)

Query: 226 GWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
               L  A+   R+    +L+ +    A +   D     T LHLAA  G L +VE ++  
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANG---ADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKN 69

Query: 284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                      G +                           +N  D  G TPL  LAA
Sbjct: 70  -----------GAD---------------------------VNAVDHAGMTPLR-LAA 88

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 21/81 (25%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           VNA    G  PLH+AA  GH  +V  L++  A    +                 +    T
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-----------------DKFGKT 148

Query: 127 ALHEAMQHRSLDVVKILIKED 147
           A   ++ + + D+ +IL K +
Sbjct: 149 AFDISIDNGNEDLAEILQKLN 169

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (269), Expect = 3e-27
 Identities = 45/183 (24%), Positives = 68/183 (37%), Gaps = 31/183 (16%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
            N++ D  L  AAK G    V  L  +           V              ++T LH 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ---------SVNCRDI------EGRQSTPLHF 48

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH---- 186
           A  +  + VV+ L++   A  ++ +  G  PL+ A   G  ++  E+L     V H    
Sbjct: 49  AAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNACSYGHYEV-AELL-----VKHGAVV 101

Query: 187 --EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
                   T LH AA      ++ KLLL        + +R G TPL      D + I +L
Sbjct: 102 NVADLWKFTPLHEAAAK-GKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDGDTD-IQDL 158

Query: 245 LLN 247
           L  
Sbjct: 159 LRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  103 bits (259), Expect = 6e-26
 Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 21/171 (12%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
           N E +  L EA +   ++ VK L            G   TPL+ AA      +  E L  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-VEYL-- 61

Query: 181 CPSVAH------EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
              + H      +   G   LH A       +V +LL+ K  +++   D + +TPLH A+
Sbjct: 62  ---LQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLV-KHGAVVNVADLWKFTPLHEAA 116

Query: 235 YFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
              +  I +LLL      A     + D   T L L    G   + + +   
Sbjct: 117 AKGKYEICKLLLQHG---ADPTKKNRDGN-TPLDLVK-DGDTDIQDLLRGD 162

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (254), Expect = 3e-25
 Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 24/156 (15%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  AA     ++ VK L   +     + +    TPLH+A+ ++R  + E LL    
Sbjct: 8   ADRQLLEAAKA-GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG- 65

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A +   D       LH A   G   V E ++ +        D   +  LH A     A
Sbjct: 66  --ADVHAKDKGGL-VPLHNACSYGHYEVAELLVKHGAVVNV-ADLWKFTPLHEA-----A 116

Query: 309 SDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
           +        Y I + L+        K+++GNTPL L
Sbjct: 117 AK-----GKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.3 bits (171), Expect = 5e-14
 Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 31/131 (23%)

Query: 223 DRYGWTPLHYASYFDRNIIAELLLNS------DKSLAYIVDNDRKMTALHLAAGQGKLRV 276
           +      L  A+        + L         D          R+ T LH AAG  ++ V
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------EGRQSTPLHFAAGYNRVSV 57

Query: 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDK 330
           VE ++ +  +     D  G   LH A      S       +Y +   L+      N  D 
Sbjct: 58  VEYLLQHGADVHA-KDKGGLVPLHNA-----CSY-----GHYEVAELLVKHGAVVNVADL 106

Query: 331 EGNTPLHLLAA 341
              TPLH  AA
Sbjct: 107 WKFTPLH-EAA 116

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  105 bits (266), Expect = 6e-27
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 19/174 (10%)

Query: 74  KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
                L  AA  G    +T+L++          + V   A+      N    TAL     
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQ----------NNVNVNAQ------NGFGRTALQVMKL 47

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT 193
             + ++ + L+    A P   +  G   ++ AA  GF   L  +LE    V  E   G  
Sbjct: 48  G-NPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 194 ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
            LH AA     + VV+ L+    S +G  +  G T    A  + RN +  L+  
Sbjct: 106 PLHLAAKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  104 bits (263), Expect = 1e-26
 Identities = 36/167 (21%), Positives = 62/167 (37%), Gaps = 10/167 (5%)

Query: 119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE--KMLTE 176
           M        L  A     L+ +  L++ +     + NG G T L +      E  + L  
Sbjct: 1   MAEPW-GNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRL-- 56

Query: 177 ILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF 236
            L    +   +  +G   +H AA     +D ++ LL+ +   +   D  G  PLH A+  
Sbjct: 57  -LLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKE 113

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
               + E L+    S     ++    TA  LA   G+  VV  + + 
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 98.2 bits (246), Expect = 4e-24
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 46/183 (25%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
               L  AA RG  + LT +L+N  +V  +   G+TAL      + + ++ + LL +  +
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK--LGNPEIARRLLLRGAN 62

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLR 275
                DR G+  +H A+        + LL      A +   DN+     LHLAA +G LR
Sbjct: 63  -PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ---ADVNIEDNEGN-LPLHLAAKEGHLR 117

Query: 276 VVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTP 335
           VVE ++ +                        AS+              +  ++ +G+T 
Sbjct: 118 VVEFLVKH-----------------------TASN--------------VGHRNHKGDTA 140

Query: 336 LHL 338
             L
Sbjct: 141 CDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 82.0 bits (204), Expect = 1e-18
 Identities = 30/153 (19%), Positives = 48/153 (31%), Gaps = 48/153 (31%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L +AA     ++ +  LL    + +   + +G T L      +  I A  LL    
Sbjct: 5   WGNELASAAAR-GDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEI-ARRLLLRG- 60

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A     D       +H AA  G L  ++ ++ +             +           
Sbjct: 61  --ANPDLKDRTGF-AVIHDAARAGFLDTLQTLLEF-----------QAD----------- 95

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                           +N +D EGN PLH LAA
Sbjct: 96  ----------------VNIEDNEGNLPLH-LAA 111

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.1 bits (116), Expect = 8e-07
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 18/78 (23%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
           VN +   G+ PLH+AAK GH  VV  L++                        N + +TA
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH---------------RNHKGDTA 140

Query: 128 LHEAMQHRSLDVVKILIK 145
              A  +   +VV ++  
Sbjct: 141 CDLARLYGRNEVVSLMQA 158

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  109 bits (273), Expect = 7e-27
 Identities = 54/269 (20%), Positives = 86/269 (31%), Gaps = 60/269 (22%)

Query: 47  DRET---IVSTEFVEQILEMCPSLLQ---SVNAK-------GDAPLHVAA---KCGHASV 90
           +R     IVS    + +  +   LL     +  +       G   L  A      G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 91  VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150
           +  L++IA+K     E                   TALH A++ R    V++L+++   V
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDV-----YYRGQTALHIAIERRCKHYVELLVEKGADV 119

Query: 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKL 210
                G    P        F                    G+  L  AA   N   +V  
Sbjct: 120 HAQARGRFFQPKDEGGYFYF--------------------GELPLSLAACT-NQPHIVHY 158

Query: 211 LLDKKKSL--IGETDRYGWTPLHYASYFDRNI---------IAELLL------NSDKSLA 253
           L +       +   D  G T LH       N          + +LLL        D +L 
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 254 YIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
            +++ND   + L +AA  GK+ + + II 
Sbjct: 219 ALLNNDGL-SPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.5 bits (243), Expect = 6e-23
 Identities = 47/231 (20%), Positives = 74/231 (32%), Gaps = 49/231 (21%)

Query: 158 GETPLYMAAERGFEKMLTEILE-------NCPSVAHEGPS-GKTALHAAAVNINSI--DV 207
               L+    RG    L  +L                 PS GKT L  A +N+++   D 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 208 VKLLLDKKKSL----------IGETDRYGWTPLHYASYFDRNIIAELLLNS-------DK 250
           + +LLD  +              +    G T LH A         ELL+          +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 251 SLAYIVDNDRKM-----TALHLAAGQGKLRVVEEIISYCPECCEL--VDGRGWNVLHFAM 303
              +   ++          L LAA   +  +V  +     +  +L   D RG  VLH  +
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 304 VSFDASD-------------LKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
              D +              L      +P   NL    + +G +PL  +AA
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDT-NLEALLNNDGLSPLM-MAA 233

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (265), Expect = 7e-27
 Identities = 41/174 (23%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 74  KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
           +    L  AA  G    V  L+             V   A       N    TAL   M 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH---------RELVHPDAL------NRFGKTALQ-VMM 44

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT 193
             S  +   L+K+  A P   +  G +P++ AA  GF   L  ++E+   V     +G  
Sbjct: 45  FGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103

Query: 194 ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
            +H A        VV  L    +S +   D  G TPL  A       + ++L  
Sbjct: 104 PIHLAVQE-GHTAVVSFLA--AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  103 bits (259), Expect = 4e-26
 Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 8/159 (5%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
              L  A     +  V+ L+  +   P + N  G+T L +    G   +  E+L+   S 
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP 61

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
             +  SG + +H AA     +D +K+L++     +   D  G  P+H A       +   
Sbjct: 62  NVQDTSGTSPVHDAART-GFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 245 LL-NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           L   SD       D     T L LA  +G   +V+ +  
Sbjct: 120 LAAESDLH---RRDARGL-TPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.3 bits (228), Expect = 7e-22
 Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 25/158 (15%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  AA     +  V+ LL ++       +R+G T L    +     IA  LL    
Sbjct: 2   AGDRLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQG- 58

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A     D     + +H AA  G L  ++ ++ +  +   + DG G   +H A      
Sbjct: 59  --ASPNVQDTSGT-SPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLA-----V 109

Query: 309 SDLKHLLNNYPIVRNLI-----NDKDKEGNTPLHLLAA 341
            +      +  +V  L      + +D  G TPL  LA 
Sbjct: 110 QE-----GHTAVVSFLAAESDLHRRDARGLTPLE-LAL 141

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.4 bits (153), Expect = 9e-12
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            N +   G +P+H AA+ G    +  L+          E G +          +      
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLV----------EHGADVNVP------DGTGALP 104

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           +H A+Q     VV  L  E  +  +  +  G TPL +A +RG + +  +IL
Sbjct: 105 IHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDL-VDIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  104 bits (263), Expect = 1e-26
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 12/157 (7%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPS 183
              L EA +    D V+IL+        +T+  G +PL++AA+ G     TE+L     S
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFST-TEVLLRAGVS 59

Query: 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE 243
                   +T LH AA      ++V++LL      +   D    T LH+A+  +   + E
Sbjct: 60  RDARTKVDRTPLHMAASE-GHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVE 117

Query: 244 LLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVE 278
           LL+      A +       K TA  ++   G   + E
Sbjct: 118 LLIKYG---ADVHTQSKFCK-TAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  102 bits (256), Expect = 1e-25
 Identities = 36/176 (20%), Positives = 63/176 (35%), Gaps = 30/176 (17%)

Query: 75  GDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
               L  AA+ G    V  L+                             +    + LH 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT---------------------DWLGTSPLHL 40

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL-ENCPSVAHEGP 189
           A Q+      ++L++       +      TPL+MAA  G   +  E+L ++   V  +  
Sbjct: 41  AAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEGHANI-VEVLLKHGADVNAKDM 98

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
              TALH A  + N  +VV+LL+ K  + +    ++  T    +       +AE+L
Sbjct: 99  LKMTALHWATEH-NHQEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 95.1 bits (238), Expect = 3e-23
 Identities = 42/188 (22%), Positives = 58/188 (30%), Gaps = 57/188 (30%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGP-----SGKTALHAAAVNINSIDVVKLLL 212
               L  AA  G +     IL     +A+  P      G + LH AA         ++LL
Sbjct: 2   LGKKLLEAARAGQDDE-VRIL-----MANGAPFTTDWLGTSPLHLAAQY-GHFSTTEVLL 54

Query: 213 DKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAG 270
               S      +   TPLH A+      I E+LL      A +   D   KMTALH A  
Sbjct: 55  RAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHG---ADVNAKDML-KMTALHWATE 109

Query: 271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDK 330
                VVE +I Y           G +                           ++ + K
Sbjct: 110 HNHQEVVELLIKY-----------GAD---------------------------VHTQSK 131

Query: 331 EGNTPLHL 338
              T   +
Sbjct: 132 FCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 83.2 bits (207), Expect = 4e-19
 Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 54/156 (34%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIG---ETDRYGWTPLHYASYFDRNIIAELLLN 247
               L  AA      D V++L+       G    TD  G +PLH A+ +      E+LL 
Sbjct: 2   LGKKLLEAARA-GQDDEVRILMAN-----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 248 SDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS 305
           +              + T LH+AA +G   +VE ++ +           G +        
Sbjct: 56  AG---VSRDARTKVDR-TPLHMAASEGHANIVEVLLKH-----------GAD-------- 92

Query: 306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                              +N KD    T LH  A 
Sbjct: 93  -------------------VNAKDMLKMTALH-WAT 108

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  106 bits (266), Expect = 4e-26
 Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 46/230 (20%)

Query: 72  NAKGDAPLHVAA---KCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTA 127
            + G   L  A    + G  + +  L++I       +     + T     G +      A
Sbjct: 40  GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHS------A 93

Query: 128 LHEAMQHRSLDVVKILIK------------EDPAVPYSTNGCGETPLYMAAERGFEKMLT 175
           LH A++ RSL  VK+L++                   +    GE PL +AA      ++T
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 176 EILENCPSVAH---EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY 232
            +LEN    A        G T LHA  +                      +    + L  
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALVMI-------------------ADNSPENSALVI 194

Query: 233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
             Y     +   L      L  I ++   +T L LAA +GK+ +   I+ 
Sbjct: 195 HMYDGLLQMGARLC-PTVQLEEISNHQ-GLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (254), Expect = 2e-24
 Identities = 45/264 (17%), Positives = 80/264 (30%), Gaps = 42/264 (15%)

Query: 7   LYEAAAKGEIEPFKEISNVLGR--------VVTHNNK-NTILHVNIISRDRETIVSTEFV 57
           L+   ++G  E    +   L            T  +   T L   +++           +
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 58  EQILEMCPSLLQSVNA-------KGDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGV 109
            QI +   +    VNA       +G + LH+A +      V  L+E  A    +      
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR----AC 121

Query: 110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK--EDPAVPYSTNGCGETPLYMAAE 167
               ++  G         L  A   +  DVV  L++    PA   +T+  G T L+    
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 168 RGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW 227
                                    +AL     +   + +   L      L   ++  G 
Sbjct: 182 IADNS-----------------PENSALVIHMYD-GLLQMGARLCPTV-QLEEISNHQGL 222

Query: 228 TPLHYASYFDRNIIAELLLNSDKS 251
           TPL  A+   +  I   +L  + S
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  100 bits (250), Expect = 6e-24
 Identities = 48/281 (17%), Positives = 75/281 (26%), Gaps = 73/281 (25%)

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRS- 136
            L      G    +T L+E  +   K L     +              T L +A+ +   
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE--------GSTGKTCLMKAVLNLQD 56

Query: 137 --LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
                +  L++                     + G  K L            E   G +A
Sbjct: 57  GVNACIMPLLQI------------------DKDSGNPKPLVNAQCTD-----EFYQGHSA 93

Query: 195 LHAAAVNINSIDVVKLLLDK------------KKSLIGETDRYGWTPLHYASYFDRNIIA 242
           LH A     S+  VKLL++              +   G    +G  PL  A+   +  + 
Sbjct: 94  LHIAIEK-RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVV 152

Query: 243 ELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLH 300
             LL +    A +   D+    T LH                         +    + L 
Sbjct: 153 TYLLENPHQPASLEATDSLGN-TVLHALVMIAD------------------NSPENSALV 193

Query: 301 FAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
             M          L         L    + +G TPL  LAA
Sbjct: 194 IHMYDGLLQMGARLCPT----VQLEEISNHQGLTPLK-LAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 39/220 (17%), Positives = 57/220 (25%), Gaps = 66/220 (30%)

Query: 158 GETPLYMAAERGFEKMLTEILE--------NCPSVAHEGPSGKTALHAAAVNI--NSIDV 207
               L+    RG  + LT +LE           S   EG +GKT L  A +N+       
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 208 VKLLLDKKKSL----------IGETDRYGWTPLHYASYFDRNIIAELLL----------- 246
           +  LL   K              +    G + LH A         +LL+           
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 247 NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306
                             L LAA   +  VV  ++    +                    
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----------------- 164

Query: 307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS 346
                             +   D  GNT LH L  +  +S
Sbjct: 165 ------------------LEATDSLGNTVLHALVMIADNS 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  105 bits (264), Expect = 4e-26
 Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 22/228 (9%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
                ++A       +   ++               +T       T+ +  TALH A   
Sbjct: 7   NIMICNLAYSGKLDELKERILA----------DKSLATR------TDQDSRTALHWACSA 50

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
              ++V+ L++         +  G +PL++AA  G ++++  +L     V     +G T 
Sbjct: 51  GHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY 254
           LH AA   N  ++  +LL+   +     D Y  T +H A+      +  +LL    S   
Sbjct: 110 LHYAASK-NRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN- 166

Query: 255 IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
            + +    T LHLA  + ++   + +++       + +      L  A
Sbjct: 167 -IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.4 bits (245), Expect = 2e-23
 Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 12/221 (5%)

Query: 156 GC--GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
           GC        +A     +++   IL +           +TALH A       ++V+ LL 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQ 61

Query: 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK 273
                + + D  GW+PLH A+    + I + LL     +     N    T LH AA + +
Sbjct: 62  LGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPLHYAASKNR 118

Query: 274 LRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGN 333
             +   ++       +  D      +H A    +   +  LL      +   N +D EGN
Sbjct: 119 HEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFY----KASTNIQDTEGN 173

Query: 334 TPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR 374
           TPLHL     R    + +    G      NK+  +   + +
Sbjct: 174 TPLHLACDEERVEEAKFL-VTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 3e-23
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 26/215 (12%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
                      LH A   GH  +V  L+          + GV    +      +D   + 
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLL----------QLGVPVNDK------DDAGWSP 76

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE 187
           LH A      ++VK L+ +  A   + N  G TPL+ AA +   ++   +LE   +   +
Sbjct: 77  LHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135

Query: 188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
                TA+H AA    ++ +V +LL  K S     D  G TPLH A   +R   A+ L+ 
Sbjct: 136 DHYDATAMHRAAAK-GNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
              S+   ++N  + T L +A G   L ++ + ++
Sbjct: 194 QGASIY--IENKEEKTPLQVAKGG--LGLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 24/164 (14%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGV-----------ESTARQM 116
           VN K   G +PLH+AA  G   +V AL+          ++G               A  +
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 117 LG------MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF 170
           L         +    TA+H A    +L +V IL+    A     +  G TPL++A +   
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEER 184

Query: 171 EKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK 214
            +    ++    S+  E    KT L  A      + ++   L +
Sbjct: 185 VEEAKFLVTQGASIYIENKEEKTPLQVAK---GGLGLILKRLAE 225

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (261), Expect = 5e-26
 Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
              +G     +  K GH+        I            +            E  T    
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYI----------AAD---------VVSEYETPWWT 50

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV-AHEGP 189
           A +      +  L+++      + +  G T L   A  G +K +  + E    +   +  
Sbjct: 51  AARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR 108

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
            G TALH AA      +VV+ L++     I   D  G T L  A    +       +
Sbjct: 109 GGLTALHMAAGY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  101 bits (253), Expect = 5e-25
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 14/167 (8%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
           T  E         +                V        ETP + AA +  E+ L+++LE
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKADEQALSQLLE 65

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD-RYGWTPLHYASYFDR 238
           +   V     +G+TAL   A    S   V+LL +     +   D R G T LH A+ + R
Sbjct: 66  DR-DVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVR 122

Query: 239 NIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISY 283
             + E L+      A I   D     TAL LA    K       + +
Sbjct: 123 PEVVEALVELG---ADIEVEDERGL-TALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 96.4 bits (241), Expect = 3e-23
 Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 50/190 (26%)

Query: 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
           T G G     +  + G              V  E    +T    AA        +  LL+
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARK-ADEQALSQLLE 65

Query: 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQ 271
            +   +   D  G T L + +    +    LL  +    A +   D    +TALH+AAG 
Sbjct: 66  DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAG---ADLDHRDMRGGLTALHMAAGY 120

Query: 272 GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKE 331
            +  VVE ++             G +                           I  +D+ 
Sbjct: 121 VRPEVVEALVE-----------LGAD---------------------------IEVEDER 142

Query: 332 GNTPLHLLAA 341
           G T L  LA 
Sbjct: 143 GLTALE-LAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 70.2 bits (173), Expect = 3e-14
 Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 39/148 (26%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           V+A    G   L   A  G    V  L E  A    +++  G                 T
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG----------------LT 112

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
           ALH A  +   +VV+ L++   A     +  G T L +A E                   
Sbjct: 113 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTP------------- 158

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDK 214
                   +      I    V+ +L  +
Sbjct: 159 ----KGNPMQFGR-RIGLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 25/136 (18%)

Query: 213 DKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG 272
           +  K +   T   G            +             A +V      T    AA + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA---ADVVSEYE--TPWWTAARKA 55

Query: 273 KLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------N 326
             + + +++       + VD  G   L F      A        +   VR L       +
Sbjct: 56  DEQALSQLLEDR--DVDAVDENGRTALLFV-----AGL-----GSDKCVRLLAEAGADLD 103

Query: 327 DKD-KEGNTPLHLLAA 341
            +D + G T LH +AA
Sbjct: 104 HRDMRGGLTALH-MAA 118

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 99.3 bits (248), Expect = 8e-24
 Identities = 44/218 (20%), Positives = 68/218 (31%), Gaps = 31/218 (14%)

Query: 70  SVNAK------GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDE 123
           S              L  AA  G   VV   ++             + +        N+E
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVK----------EMNDPSQP------NEE 53

Query: 124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS 183
             TALH A+   +  +V  LI    A   S +  G TPL+ AA      +   ++++  +
Sbjct: 54  GITALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112

Query: 184 VAHEGPS-GKTALHAAAVNIN-SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
           +     S G TA            D    L D ++S +G  +      L   S       
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYS---AEFG 168

Query: 242 AELL-LNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
            EL     +       D   + T    AA  G+   V 
Sbjct: 169 DELSFREGESVTVLRRDGPEE-TDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.5 bits (246), Expect = 2e-23
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 22/239 (9%)

Query: 140 VKILIKE--DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
           ++ ++++   P             L  AA  G  +++ + ++     +     G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI-- 255
           A     +  +V  L+    + +   D +GWTPLH A+  +  +I   L+      A I  
Sbjct: 61  AICG-ANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHG---AAIFA 115

Query: 256 VDNDRKMTALHLAAG--QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKH 313
                  TA        +G       +     +   L++      L     S +  D   
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDY--SAEFGDELS 172

Query: 314 LLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHR-IVPWNVGGDYQAVNKQNISVKH 371
                 +    +  +D    T     AAL         VP N  G +  V  Q   VKH
Sbjct: 173 FREGESV--T-VLRRDGPEETDWW-WAALHG---QEGYVPRNYFGLFPRVKPQRSKVKH 224

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 95.2 bits (238), Expect = 2e-23
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 3/128 (2%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILE 179
           TN    T LH A     +  V+ L++   + P   +  G TPL+ A   G  K++  +L+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 180 NCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRN 239
           +   V   G    + LH AA N   +D+VKLLL    S     + +G  P+ Y       
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMK 122

Query: 240 IIAELLLN 247
            +  L   
Sbjct: 123 SLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 87.5 bits (218), Expect = 8e-21
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
           TN  GET L++A+ +G    +  +L+N      +  +G T LH A  +   + VV+LLL 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLL- 63

Query: 214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQ 271
           + K+L+  T     +PLH A+      I +LLL+    ++    V+       +     +
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN---AVNIFGL-RPVDYTDDE 119

Query: 272 GKLRVVEEIIS 282
               ++     
Sbjct: 120 SMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.2 bits (207), Expect = 3e-19
 Identities = 36/150 (24%), Positives = 51/150 (34%), Gaps = 46/150 (30%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G+T LH A++    I  V+ LL +  S     D  GWTPLH A       + ELLL    
Sbjct: 10  GETLLHIASIK-GDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK- 66

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A +         + LH AA  G + +V+ ++SY                        A
Sbjct: 67  --ALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLSY-----------------------GA 100

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
           S                N  +  G  P+  
Sbjct: 101 S---------------RNAVNIFGLRPVDY 115

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.1 bits (152), Expect = 7e-12
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTA 127
            N K   G  PLH A   GH  VV  L++                       T  + ++ 
Sbjct: 36  PNVKDHAGWTPLHEACNHGHLKVVELLLQ----------HKALVNT------TGYQNDSP 79

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
           LH+A ++  +D+VK+L+    A   + N  G  P+    +   + +L  + E 
Sbjct: 80  LHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLL-LLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 18/92 (19%)

Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN 317
           N R  T LH+A+ +G +  VE ++    +   + D  GW  LH A      +       +
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEA-----CNH-----GH 55

Query: 318 YPIVRNLI------NDKDKEGNTPLHLLAALC 343
             +V  L+      N    + ++PLH  AA  
Sbjct: 56  LKVVELLLQHKALVNTTGYQNDSPLH-DAAKN 86

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 35/272 (12%)

Query: 92  TALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP 151
             L  +   + +E+ + + + +               H +      +V          + 
Sbjct: 65  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124

Query: 152 YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSID--VVK 209
              +  G TPL+        +++  ++++  +  +    G++ L  A  ++N+ D    +
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 184

Query: 210 LLLDKKKSLIGETDRYGWTPLHYASYFDRN------------IIAELLLNSDKSLAYIVD 257
            LLD     +   D    T LH+                   I+   ++   K    I  
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK--KQNRPIQS 242

Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELV---DGRGWNVLHFAMVSFDASDLKHL 314
              +  +        +   + E +        ++   D  G   L+ A            
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA----------R 292

Query: 315 LNNYPIVRNLI------NDKDKEGNTPLHLLA 340
           L N  IV  L+         +K G  P+   A
Sbjct: 293 LGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.8 bits (243), Expect = 2e-22
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 28/260 (10%)

Query: 101 QPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET 160
            P ++   + S           +    L   +     ++   L   D +   S  G    
Sbjct: 41  SPLKIMKALPSPVVND-NEQKMKLEAFLQRLLFPEIQEMPTSLN-NDSSNRNSEGGSSNQ 98

Query: 161 PLYMAAERGFEKMLTEILENCPSV-----AHEGPSGKTALHAAAVNINSIDVVKLLLDKK 215
                +   F+ +L E+ +  P+            G T LH       ++++VK L+   
Sbjct: 99  QQQHVS---FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHG 154

Query: 216 KSLIGETDRYGWTPLHYASYFDRNI---IAELLLNSDKSLAYIVDNDRKMTALHLAAGQG 272
            +     D  G + L  A     N      E LL+       + D+  + T LH      
Sbjct: 155 SN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR-TILHHIIITS 212

Query: 273 KLRVVEEIISYCPEC-CELV----------DGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
            +        Y  +     +                             +   L+   I+
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272

Query: 322 RNLINDKDKEGNTPLHLLAA 341
            N++N +D  G+T L+ +AA
Sbjct: 273 ANMLNAQDSNGDTCLN-IAA 291

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 87.4 bits (216), Expect = 5e-19
 Identities = 33/274 (12%), Positives = 82/274 (29%), Gaps = 40/274 (14%)

Query: 18  PFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDA 77
            F EI  +   +   ++       +   + +        ++++ +  P+   ++N   D 
Sbjct: 71  LFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD-SLLQEVNDAFPNTQLNLNIPVDE 129

Query: 78  ----PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
               PLH      +  +V  L++           G            ++   + L +A++
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVK----------HGSNRLYG------DNMGESCLVKAVK 173

Query: 134 HR---SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG------------FEKMLTEIL 178
                     + L+          +    T L+                   + ++  I+
Sbjct: 174 SVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233

Query: 179 ENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK--KSLIGETDRYGWTPLHYASYF 236
           +        G + K +            +++ L  K    +++   D  G T L+ A+  
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG 270
               I + LL+      +I +       +   AG
Sbjct: 294 GNISIVDALLDYGADP-FIANKSGL-RPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 72.4 bits (177), Expect = 5e-14
 Identities = 29/236 (12%), Positives = 61/236 (25%), Gaps = 52/236 (22%)

Query: 120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST----------NGCGETPLYMAAERG 169
              + N      +   + D+    +     +  +               E  L       
Sbjct: 15  NGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPE 74

Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229
            ++M T +  +  +   EG S        + +    +V     + + +L    D +G TP
Sbjct: 75  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTP 134

Query: 230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQG---KLRVVEEIISYCPE 286
           LH+ +      + + L+    +     DN  + + L  A            E +      
Sbjct: 135 LHWLTSIANLELVKHLVKHGSNR-LYGDNMGE-SCLVKAVKSVNNYDSGTFEAL------ 186

Query: 287 CCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL 342
                                   L +L          +  +D    T LH +   
Sbjct: 187 ------------------------LDYLYPC-------LILEDSMNRTILHHIIIT 211

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.1 bits (225), Expect = 8e-22
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 8/128 (6%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
           G TPL++AA  G  +++  +LE    V  +  +G+T LH AA N   ++VVKLLL+   +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAG-A 59

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLR 275
            +   D+ G TPLH A+      + +LLL +    A +   D + + T LHLAA  G L 
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG---ADVNAKDKNGR-TPLHLAARNGHLE 115

Query: 276 VVEEIISY 283
           VV+ ++  
Sbjct: 116 VVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 84.7 bits (211), Expect = 8e-20
 Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 47/154 (30%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD 249
           +G+T LH AA N   ++VVKLLL+     +   D+ G TPLH A+      + +LLL + 
Sbjct: 1   NGRTPLHLAARN-GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 250 KSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
              A +   D + + T LHLAA  G L VV+ ++             G +          
Sbjct: 59  ---ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLE-----------AGAD---------- 93

Query: 308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                            +N KDK G TPLH LAA
Sbjct: 94  -----------------VNAKDKNGRTPLH-LAA 109

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 79.7 bits (198), Expect = 4e-18
 Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 54/173 (31%)

Query: 75  GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
           G  PLH+AA+ GH  VV  L+E  A    K                 +    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAAR 44

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT 193
           +  L+VVK+L++   A   + +  G TPL++AA  G                        
Sbjct: 45  NGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG------------------------ 79

Query: 194 ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
                      ++VVKLLL+     +   D+ G TPLH A+      + +LLL
Sbjct: 80  ----------HLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.3 bits (145), Expect = 5e-11
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 22/103 (21%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           VNAK   G  PLH+AA+ GH  VV  L+E  A    K                 +    T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRT 70

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
            LH A ++  L+VVK+L++   A   + +  G TPL++AA  G
Sbjct: 71  PLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 112

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.0 bits (227), Expect = 9e-22
 Identities = 27/164 (16%), Positives = 54/164 (32%), Gaps = 16/164 (9%)

Query: 118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE--KMLT 175
           G + +     L  A     ++ V+ L++   A P + N  G  P+ +         ++L 
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMMMGSARVAELL- 63

Query: 176 EILENCPSVAHEGPSGKT-ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
             L +        P+  T  +H AA     +D + +L       +   D +G  P+  A 
Sbjct: 64  --LLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAE 119

Query: 235 YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
                 +A  L  +                  + A +G   + +
Sbjct: 120 ELGHRDVARYLRAAA------GGTRGS-NHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 21/156 (13%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN-- 247
                L  AA     ++ V+ LL+   +     + YG  P+          +AELLL   
Sbjct: 11  PSADWLATAAAR-GRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLLHG 67

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD 307
           ++ + A   D       +H AA +G L  +  +        ++ D  G   +  A     
Sbjct: 68  AEPNCA---DPATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLA----- 118

Query: 308 ASDLKHLLNNYPIVRNLINDK-DKEGNTPLHLLAAL 342
             +L H      + R L        G+     + A 
Sbjct: 119 -EELGHR----DVARYLRAAAGGTRGSNHAR-IDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 79.1 bits (196), Expect = 1e-17
 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
               L  AA RG  + +  +LE   +       G+  +      + S  V +LLL     
Sbjct: 12  SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM--MGSARVAELLLLHGAE 69

Query: 218 LIGETDRYGWT-PLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKL 274
                D    T P+H A+         +L  +        + D       + LA   G  
Sbjct: 70  -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAW-GRLPVDLAEELGHR 124

Query: 275 RVVEEIISY 283
            V   + + 
Sbjct: 125 DVARYLRAA 133

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           +E   +LL+   + NA    G  P+ V    G A V   L+            G E    
Sbjct: 25  VEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLL----------LHGAEPNCA 73

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
                        +H+A +   LD + +L +   A     +  G  P+ +A E G   + 
Sbjct: 74  -----DPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVA 127

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVV 208
             +             G       A      D+ 
Sbjct: 128 RYLRAAAGGT-----RGSNHARIDAAE-GPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.2 bits (147), Expect = 4e-11
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 30/134 (22%)

Query: 219 IGETDRYGWTPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLRV 276
            G +       L  A+   R      LL +  + +      N      + +    G  RV
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAP----NSYGRRPIQVMM-MGSARV 59

Query: 277 VEEIISY--CPECCELVDGRGWNV-LHFAMVSFDASDLKHLLNNYPIVRNLI------ND 327
            E ++ +   P C    D       +H A     A +          +  L       + 
Sbjct: 60  AELLLLHGAEPNCA---DPATLTRPVHDA-----ARE-----GFLDTLVVLHRAGARLDV 106

Query: 328 KDKEGNTPLHLLAA 341
           +D  G  P+  LA 
Sbjct: 107 RDAWGRLPVD-LAE 119

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 91.7 bits (228), Expect = 1e-21
 Identities = 30/192 (15%), Positives = 59/192 (30%), Gaps = 34/192 (17%)

Query: 72  NAKGD-APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
           NA  +   +  AA  G       L           E G E          +  K+  L++
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLEL----------FEKGYEDKE-------SVLKSNILYD 44

Query: 131 AMQHRS----LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEI------LEN 180
            +++ +      +   LI +  A   S    G T  +   + G   +          LE 
Sbjct: 45  VLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103

Query: 181 CPSVAHEGPSGKTALHAAAVN-----INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
              +       K  +     N        I + KL+  +    +   D++G T L +   
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 236 FDRNIIAELLLN 247
             + I  +++ +
Sbjct: 164 CQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.4 bits (204), Expect = 2e-18
 Identities = 18/174 (10%), Positives = 47/174 (27%), Gaps = 15/174 (8%)

Query: 123 EKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
            +   +  A    + +    L ++  +       +      L    +    K+   ++  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 181 CPSVAHEGPSGKTALHAAAVN-----INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
              +      G T               + ++ K+ L+K    I    +     +    +
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIF 123

Query: 236 ------FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
                  +   + +L+ +       I D     TAL       K   ++ +  Y
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL-TALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.2 bits (193), Expect = 5e-17
 Identities = 25/170 (14%), Positives = 51/170 (30%), Gaps = 35/170 (20%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDK--KKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
           S    + AAA+   + +    L +K  +           +  L   +   R  I+  L+N
Sbjct: 5   SEYRTVSAAAML-GTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 248 SDKSLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCEL----------VDGRG 295
                A I     +   T        G   +         E C++          +    
Sbjct: 64  KG---ADIKSRTKE-GTTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPY 114

Query: 296 WNVLHFAMVSFDASDLKHLLNNYPIVRNL-------INDKDKEGNTPLHL 338
             V+   + ++   + + +    P+ + +       +  KDK G T L  
Sbjct: 115 KIVVFKNIFNYFVDENEMI----PLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 26/186 (13%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           +  AA  G  E F E+            K+ IL+          ++     E   ++   
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILY---------DVLRNNNDEARYKISMF 60

Query: 67  LLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT 120
           L+     + ++   G        + G   +     E+ K     LE G + TA       
Sbjct: 61  LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTT-ELCKIF---LEKGADITAL------ 110

Query: 121 NDEKNTALHEAMQHRSLD------VVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
                  + + + +  +D      + K++  +        +  G T L            
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA- 169

Query: 175 TEILEN 180
            +++E+
Sbjct: 170 LKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 14/87 (16%)

Query: 261 KMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPI 320
           +   +  AA  G      E+     +  E  +    + + + ++  +  +       Y I
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFE---KGYEDKESVLKSNILYDVLRNNNDE-----ARYKI 57

Query: 321 VRNLI------NDKDKEGNTPLHLLAA 341
              LI        + KEG T    L  
Sbjct: 58  SMFLINKGADIKSRTKEGTTLFFPLFQ 84

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 88.2 bits (220), Expect = 5e-21
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
              L EA +    D V+IL+    A   + +  G TPLY+A   G  +++  +L+N   V
Sbjct: 15  GKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
                 G T LH AA     +++ ++LL      +   D++G T    +       +AE+
Sbjct: 74  NAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEI 131

Query: 245 LL 246
           L 
Sbjct: 132 LQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
               L  AA  G +  +  ++ N   V  +   G T L+ A  +   +++V++LL     
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGAD 72

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLR 275
            +   D  G+TPLH A++     IAE+LL      A +   D   K TA  ++ G G   
Sbjct: 73  -VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG---ADVNAQDKFGK-TAFDISIGNGNED 127

Query: 276 VVEEIISY 283
           + E +   
Sbjct: 128 LAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.8 bits (206), Expect = 4e-19
 Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 46/150 (30%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  AA      D V++L+      +   D YG TPL+ A+      I E+LL +  
Sbjct: 14  LGKKLLEAARA-GQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG- 70

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A +  VD     T LHLAA  G L + E ++ +           G +           
Sbjct: 71  --ADVNAVDAIGF-TPLHLAAFIGHLEIAEVLLKH-----------GAD----------- 105

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                           +N +DK G T   +
Sbjct: 106 ----------------VNAQDKFGKTAFDI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 27/84 (32%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDE 123
           VNA    G  PLH+AA  GH  +   L++    +  +                    +  
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ--------------------DKF 112

Query: 124 KNTALHEAMQHRSLDVVKILIKED 147
             TA   ++ + + D+ +IL K +
Sbjct: 113 GKTAFDISIGNGNEDLAEILQKLN 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 85.1 bits (212), Expect = 3e-20
 Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 46/149 (30%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
           G T LH AA N    + VK LL K  + +    + G TPLH A+      I +LLL    
Sbjct: 9   GNTPLHNAAKN-GHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG- 65

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A +     D   T  HLA   G   +V+ + +           +G +           
Sbjct: 66  --ADVNARSKDGN-TPEHLAKKNGHHEIVKLLDA-----------KGAD----------- 100

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLH 337
                           +N +    +   H
Sbjct: 101 ----------------VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.3 bits (202), Expect = 8e-19
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
           + + NT LH A ++   + VK L+ +  A   + +  G TPL++AA+ G  +++  +L  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 181 CPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY 232
              V      G T  H A  N    ++VKLL  K    +           H+
Sbjct: 65  GADVNARSKDGNTPEHLAKKN-GHHEIVKLLDAKGAD-VNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 52.4 bits (127), Expect = 9e-09
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 22/97 (22%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           VNA+   G+ PLH+AAK GHA +V  L+   A    +                 + + NT
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-----------------SKDGNT 77

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLY 163
             H A ++   ++VK+L  +  A   + +       +
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKG-ADVNARSWGSSHHHH 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 84.8 bits (211), Expect = 6e-20
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
            +     A + G    + + +     V      G+  LH AA     +++++ LL  K +
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLL-LKGA 64

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLR 275
            I   D++  TPL  A Y       +LLL+   DK+   +   D   TA      Q    
Sbjct: 65  DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT---VKGPDGL-TAFEATDNQAIKA 120

Query: 276 VVE 278
           +++
Sbjct: 121 LLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 30/150 (20%), Positives = 44/150 (29%), Gaps = 46/150 (30%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
                  A  N   +D VK  + K +  +  T   G  PLHYA+   +  I E LL    
Sbjct: 7   CDKEFMWALKN-GDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKG- 63

Query: 251 SLAYI--VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDA 308
             A I   D     T L  A  +G +  V+ ++S           +G +           
Sbjct: 64  --ADINAPDKHHI-TPLLSAVYEGHVSCVKLLLS-----------KGADK---------- 99

Query: 309 SDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                              K  +G T    
Sbjct: 100 -----------------TVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 29/175 (16%), Positives = 43/175 (24%), Gaps = 55/175 (31%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
           + +  D     A K G    V   +            G +         T +     LH 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYV----------AKGEDVNR------TLEGGRKPLHY 46

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS 190
           A     L++++ L+ +  A   + +    TPL  A   G                     
Sbjct: 47  AADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEG--------------------- 84

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
                         +  VKLLL K           G T            I  LL
Sbjct: 85  -------------HVSCVKLLLSKGAD-KTVKGPDGLTAFEATD---NQAIKALL 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE--KMLTEIL 178
               +  L  A     ++ V+ L++   A P + N  G  P+ +      +  ++L   L
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMMGSAQVAELL---L 64

Query: 179 ENCPSVAHEGPSGKT-ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFD 237
            +        P+  T  +H AA     +D + +L       +   D +G  P+  A    
Sbjct: 65  LHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQG 122

Query: 238 RNIIAELLLN 247
              IA  L  
Sbjct: 123 HRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 79.8 bits (198), Expect = 5e-18
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 10/129 (7%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
            +  L  AA RG  + + ++LE           G+  +      + S  V +LLL     
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM--MGSAQVAELLLLHGAE 69

Query: 218 LIGETDRYGWT-PLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKL 274
                D    T P+H A+         +L  +        + D       + LA  QG  
Sbjct: 70  -PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---VCDAW-GRLPVDLAEEQGHR 124

Query: 275 RVVEEIISY 283
            +   + + 
Sbjct: 125 DIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 26/130 (20%)

Query: 221 ETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI--VDNDRKMTALHLAAGQGKLRVVE 278
                    L  A+   +      LL +    A    ++       + +    G  +V E
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAG---ADPNALNRF-GRRPIQVMM-MGSAQVAE 61

Query: 279 EIISYCPECCELVDGRGWNV-LHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKE 331
            ++ +  E     D       +H A     A +          +  L       +  D  
Sbjct: 62  LLLLHGAE-PNCADPATLTRPVHDA-----ARE-----GFLDTLVVLHRAGARLDVCDAW 110

Query: 332 GNTPLHLLAA 341
           G  P+  LA 
Sbjct: 111 GRLPVD-LAE 119

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.7 bits (217), Expect = 7e-19
 Identities = 45/283 (15%), Positives = 81/283 (28%), Gaps = 50/283 (17%)

Query: 66  SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN 125
           S       K +    VAA  G +S +    +        L S               E  
Sbjct: 83  SDAHKKGIKSEVICFVAAITGCSSAL----DTLCLL---LTSDEIVKV------IQAENY 129

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYST-NGCGETPLYMAAERGFEKMLTEILENCPSV 184
            A   A ++  L V+  L +  P    +           +AAE G   +L  + E  P+ 
Sbjct: 130 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 185 AHE--GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
           A          A   AAV     +V+  LL     ++   + + +             + 
Sbjct: 190 ATAMIQAENYYAFRWAAVGRGHHNVINFLL-DCPVMLAYAEIHEFEYGEKY-------VN 241

Query: 243 ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
             +        ++        A  L+   G   +V +              +G+ +L   
Sbjct: 242 PFIAR------HVNRLKEMHDAFKLSNPDGVFDLVTKSECL----------QGFYMLRNL 285

Query: 303 MVSFDASDLKHL-----LNNYPIVRNL--INDKDKEGNTPLHL 338
           +     +D   L     L + P ++ L        + N  L L
Sbjct: 286 I---RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 84.6 bits (209), Expect = 6e-18
 Identities = 36/250 (14%), Positives = 75/250 (30%), Gaps = 49/250 (19%)

Query: 54  TEFVEQILEMCPSLLQS-VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112
              + ++ E+ P+ + + + A+      +AA+ GH  V+  L E+A              
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA-------------- 186

Query: 113 ARQMLGMTNDEKNTALHE-AMQHRSLDVVKILIKEDPAVPYS-----------------T 154
             +   M   E   A    A+     +V+  L+     + Y+                  
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246

Query: 155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS--IDVVKLLL 212
           +      ++ A +      + +++        E   G   L       +   +D ++ LL
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTK-----SECLQGFYMLRNLIRRNDEVLLDDIRFLL 301

Query: 213 D----KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA 268
                K  +            L  A          LLL+    LA    N+      ++ 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN-----YYIN 356

Query: 269 AGQGKLRVVE 278
              G+L +  
Sbjct: 357 ETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 45/238 (18%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
           + A+      +AA+ GH  V+  L E+A                +++ M   E   A   
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELA--------------PTEIMAMIQAENYHAFRL 169

Query: 131 AMQHRSLDVVKILIKEDPAVPYST-NGCGETPLYMAA-ERGFEKMLTEILENCPSVAHEG 188
           A ++  L V+  L +  P    +            AA  RG   ++  +L+    +A+  
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 189 PSGKTALHAA-----------------AVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH 231
                                      A  +++ D V  L+ K           G+  L 
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK------SECLQGFYMLR 283

Query: 232 YASYFDRNIIAELL-----LNSDKSLAYIVDNDRK-MTALHLAAGQGKLRVVEEIISY 283
                +  ++ + +     +   K+LA            L LA   G       ++S 
Sbjct: 284 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 1e-13
 Identities = 33/234 (14%), Positives = 63/234 (26%), Gaps = 20/234 (8%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEI--- 177
           N E+   L            K L  +     +      E   ++AA  G    L  +   
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLWSDA----HKKGIKSEVICFVAAITGCSSALDTLCLL 114

Query: 178 LENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK-KSLIGETDRYGWTPLHYASYF 236
           L +   V         A   AA N   + V+  L +     ++       +     A+  
Sbjct: 115 LTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 173

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA-GQGKLRVVEEIISYCPECCELVDGRG 295
               +   L     + A  +       A   AA G+G   V+  ++          +   
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-MLAYAEIHE 232

Query: 296 WNVLHFAMVSFDASDLKHLLNNYPIVRN---------LINDKDKEGNTPLHLLA 340
           +      +  F A  +  L   +   +          +   +  +G   L  L 
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 22/231 (9%), Positives = 47/231 (20%), Gaps = 64/231 (27%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN 180
               +      M     + + I +         T    +    +              + 
Sbjct: 31  QHFISANELSLMTLSYKEAIHIFLP-------GTKNMEQVRQLLCLYYA--HYNRNAKQL 81

Query: 181 CPSVAHEGPSGKTALHAAAVN--INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
                 +G   +     AA+    +++D + LLL     ++       +           
Sbjct: 82  WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVIQAENYQAFR------- 133

Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE-LVDGRGWN 297
                                       LAA  G L V+  +    P     ++    ++
Sbjct: 134 ----------------------------LAAENGHLHVLNRLCELAPTEIMAMIQAENYH 165

Query: 298 VLHFA-------MVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
               A       ++         L    P           E        A 
Sbjct: 166 AFRLAAENGHLHVL-------NRLCELAPTE--ATAMIQAENYYAFRWAAV 207

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.2 bits (194), Expect = 6e-18
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 8/96 (8%)

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN-- 247
           +G+T LH AA N   ++VVKLLL+     +   D+ G TPLH A+      + +LLL   
Sbjct: 1   NGRTPLHLAARN-GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           +D +     D + + T LHLAA  G L VV+ ++  
Sbjct: 59  ADVN---AKDKNGR-TPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 2e-10
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 19/96 (19%)

Query: 75  GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
           G  PLH+AA+ GH  VV  L+E  A    K                 +    T LH A +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRTPLHLAAR 44

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
           +  L+VVK+L++   A   + +  G TPL++AA  G
Sbjct: 45  NGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.8 bits (136), Expect = 4e-10
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 45/118 (38%)

Query: 226 GWTPLHYASYFDRNIIAELLLNS--DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           G TPLH A+      + +LLL +  D +     D + + T LHLAA  G L VV+ ++  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGR-TPLHLAARNGHLEVVKLLLE- 56

Query: 284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAA 341
                      G +                           +N KDK G TPLH LAA
Sbjct: 57  ----------AGAD---------------------------VNAKDKNGRTPLH-LAA 76

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 21/79 (26%)

Query: 71  VNAK---GDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNT 126
           VNAK   G  PLH+AA+ GH  VV  L+E  A    K                 +    T
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------------DKNGRT 70

Query: 127 ALHEAMQHRSLDVVKILIK 145
            LH A ++  L+VVK+L++
Sbjct: 71  PLHLAARNGHLEVVKLLLE 89

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  AA      D V++L+      +   D+ G TPLH A+      + +LLL +  
Sbjct: 24  LGKKLLEAARA-GQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG- 80

Query: 251 SLAYIVDNDRK-MTALHLAAGQGKLRVVE 278
             A +   D+   TA  ++   G   + E
Sbjct: 81  --ADVXAQDKFGKTAFDISIDNGNEDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 6e-14
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 6/115 (5%)

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS 190
              H        L+     +           L  AA  G +  +  ++ N   VA +  +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
           G T LH AA N   ++VVKLLL+     +   D++G T    +       +AE+L
Sbjct: 57  GSTPLHLAARN-GHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALH 129
           + +     L  AA+ G    V  L+   A    K                 +   +T LH
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-----------------DKNGSTPLH 62

Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKML 174
            A ++  L+VVK+L++   A   + +  G+T   ++ + G E + 
Sbjct: 63  LAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDISIDNGNEDLA 106

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 81/557 (14%), Positives = 157/557 (28%), Gaps = 147/557 (26%)

Query: 32  HNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVV 91
           +  K+ IL V       +  V     + + +M  S+L           H+       S  
Sbjct: 16  YQYKD-ILSVF-----EDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSGT 64

Query: 92  TALIEIAKKQPKELESGVESTARQMLGMTNDEKN-----TALHEAMQHRSLDVVKILIKE 146
             L      +        E   ++ +       N     + +    +  S+     + + 
Sbjct: 65  LRLFWTLLSKQ-------EEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 147 DPAVPYSTNGCGETPLY--MAAERGFEKMLTEI------LENCPSVAHEGP--SGKTALH 196
           D    Y+ N      ++      R   +   ++      L    +V  +G   SGKT + 
Sbjct: 117 DRL--YNDN-----QVFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV- 166

Query: 197 AAAV--------------------NINSIDVV-----KLLLDKKKSLIGETDRYGWTPLH 231
           A  V                    N NS + V     KLL     +    +D      L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 232 YASYFDRNIIAELLLNSDKSLAYIV-DN--DRKMTALHLAAGQGKLRVVEEIISYCPECC 288
             S      +  LL +       +V  N  + K       A     +++  + +   +  
Sbjct: 227 IHSIQAE--LRRLLKSKPYENCLLVLLNVQNAK----AWNAFNLSCKIL--LTTRFKQVT 278

Query: 289 ELVDGRGWNVLHFAMV----SFDASDLKHLLNNYPIVRNLINDKDKE-------GNTPLH 337
           + +        H ++     +    ++K LL  Y      ++ + ++        N P  
Sbjct: 279 DFLSAA--TTTHISLDHHSMTLTPDEVKSLLLKY------LDCRPQDLPREVLTTN-PRR 329

Query: 338 --LLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLE-QEIRELSKYIGSG 394
             ++A   RD       W     +   +K    +  I       LE  E R++  +    
Sbjct: 330 LSIIAESIRDGLATWDNW----KHVNCDK----LTTIIESSLNVLEPAEYRKM--FDRLS 379

Query: 395 QYPEGVVSMRENKIVKRT--SHWKFIDENYIGMKEASEFHLVVATLIATVAFSAAFTLPG 452
            +P          I        W  + +    M   ++ H    +L+      +  ++P 
Sbjct: 380 VFPPSA------HIPTILLSLIWFDVIK-SDVMVVVNKLH--KYSLVEKQPKESTISIPS 430

Query: 453 G-----NKSEGSPDQGAAILSKQAAFQAFVISDAIAMALSLSAVFVYF----------IL 497
                  K E       +I+      + F   D     L    +  YF          I 
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-----LIPPYLDQYFYSHIGHHLKNIE 485

Query: 498 SLKAFQEF--IFL-FAF 511
             +    F  +FL F F
Sbjct: 486 HPERMTLFRMVFLDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 55/316 (17%), Positives = 97/316 (30%), Gaps = 96/316 (30%)

Query: 16  IEPFKEISNVLGRVVTHNNKNTI---LHVN------IISRDRETIVSTEFVEQILEMC-- 64
             P + +S ++   +  +   T     HVN      II      +   E+  ++ +    
Sbjct: 325 TNPRR-LS-IIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSV 380

Query: 65  --------PSLLQSV--NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
                     LL  +  +      + V  K    S+V       +KQPKE    + S   
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-------EKQPKESTISIPS--I 431

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL--YMAAERGFEK 172
            +      E   ALH ++    +D   I         + ++      L  Y  +  G   
Sbjct: 432 YLELKVKLENEYALHRSI----VDHYNIPKT------FDSDDLIPPYLDQYFYSHIGH-- 479

Query: 173 MLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD----KKKSLIGETDRYGWT 228
                        H     K   H   + +       + LD    ++K  I    R+  T
Sbjct: 480 -------------HL----KNIEHPERMTLFR----MVFLDFRFLEQK--I----RHDST 512

Query: 229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECC 288
             + +       I   L        YI DND K             R+V  I+ + P+  
Sbjct: 513 AWNASGS-----ILNTLQQLKFYKPYICDNDPKYE-----------RLVNAILDFLPKIE 556

Query: 289 E-LVDGRGWNVLHFAM 303
           E L+  +  ++L  A+
Sbjct: 557 ENLICSKYTDLLRIAL 572

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 178 LENCPSVAHEGPSGKTALHAAAVNINSIDVVKL-LLDKKKSLIGETDRYGWTPLHYASYF 236
           L     +A+     +TALH A  +++   +  +  L +    + +    G T LHY    
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           D     +LLL   K+   I +   + T L +A         E +   
Sbjct: 216 DNAECLKLLLRG-KASIEIANESGE-TPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 74  KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
             +  LH+A +    + +  +  +       +++      +        + +TALH    
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFL-------VQNSGNLDKQ------TGKGSTALHYCCL 214

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
             + + +K+L++   A     N  GETPL +A     E    E+L   
Sbjct: 215 TDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEH-CEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 180 NCPSVAHEGPS-GKTALHAA--AVNINSIDVVKLLL----DKKKSLIGETDRYGWTPLHY 232
             P    +  +  +  LH A    N  S+ +V  ++          +      G T LHY
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----LDAKAADGNTALHY 232

Query: 233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
           A+ +++    +LLL   ++L   V+   + TAL +A  +      E
Sbjct: 233 AALYNQPDCLKLLLKG-RALVGTVNEAGE-TALDIARKKHHKECEE 276

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 12/154 (7%)

Query: 98  AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC 157
           AK              +++     +    ++ EA  +   D  + L   D   P      
Sbjct: 137 AKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQ-DFGQPLPGPDAQAP------ 189

Query: 158 GETPLYMAAERGFEK---MLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK 214
            E  L++A +   +    ++  I++N   +  +   G TALH AA+  N  D +KLLL K
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY-NQPDCLKLLL-K 247

Query: 215 KKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS 248
            ++L+G  +  G T L  A         ELL  +
Sbjct: 248 GRALVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 17/124 (13%)

Query: 63  MCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTND 122
             P       A  +  LH+A K  + + +  L++        +++G        L     
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFI------IQNGGH------LDAKAA 224

Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF---EKMLTEILE 179
           + NTALH A  +   D +K+L+K   A+  + N  GET L +A ++     E++L +   
Sbjct: 225 DGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

Query: 180 NCPS 183
              +
Sbjct: 284 GTFA 287

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 5/130 (3%)

Query: 182 PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
            +  + G    T L  A    + +    LL +     + + D  G  PLH+A+      +
Sbjct: 226 VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN--VNQADSAGRGPLHHATILGHTGL 283

Query: 242 AELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHF 301
           A L L     L    D++ +   L +A  +     +  ++                   +
Sbjct: 284 ACLFLKRGADLG-ARDSEGR-DPLTIAM-ETANADIVTLLRLAKMREAEAAQGQAGDETY 340

Query: 302 AMVSFDASDL 311
             +  D S +
Sbjct: 341 LDIFRDFSLM 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	577
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.61

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.8e-54  Score=446.69  Aligned_cols=349  Identities=24%  Similarity=0.286  Sum_probs=281.5

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA   82 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A   82 (577)
                      .++|+.|+..|+.+++++|++.+.+. ..+..|.||||+|+..|+   .+++++|++    .+..++.++..|.||||+|
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   87 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH---TEVAKYLLQ----NKAKVNAKAKDDQTPLHCA   87 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC---HHHHHHHHH----HTCCSSCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHh----CCCCCCCCCCCCCCHHHHH
Confidence            57899999999999999999998877 555689999999999999   999999988    4677888999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHH
Q 008102           83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL  162 (577)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  162 (577)
                      +..|+.++|++|++.+++.                +..+..|.||||+|++.|+.+++++|++++.+.. ..+..|.|||
T Consensus        88 ~~~g~~~~v~~Ll~~ga~~----------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L  150 (437)
T 1n11_A           88 ARIGHTNMVKLLLENNANP----------------NLATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPL  150 (437)
T ss_dssp             HHHTCHHHHHHHHHHTCCT----------------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHH
T ss_pred             HHCCCHHHHHHHHhCCCCC----------------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHH
Confidence            9999999999999998763                4567778888888888888888888888776654 4566678888


Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHH
Q 008102          163 YMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA  242 (577)
Q Consensus       163 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  242 (577)
                      |+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..+..|.||||+|+..|+.+++
T Consensus       151 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~  228 (437)
T 1n11_A          151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVA  228 (437)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHH
Confidence            888888888888888888888877777888888888887 788888888887776 566677788888888888888888


Q ss_pred             HHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccc
Q 008102          243 ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR  322 (577)
Q Consensus       243 ~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  322 (577)
                      ++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ .+..|..|+||||+|+..++.+++++|+++    |
T Consensus       229 ~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g  301 (437)
T 1n11_A          229 RSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----G  301 (437)
T ss_dssp             HHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----T
T ss_pred             HHHHHcCCCCC--CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC----C
Confidence            88888777654  2334677888888888888888888877777 567777788888888888888888888777    7


Q ss_pred             ccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          323 NLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       323 ~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      .++|.+|..|+||||+|+..+ ...+.++|+++|+|+|.+|..|.||+++|. .++.+++++|.+
T Consensus       302 ~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          302 VMVDATTRMGYTPLHVASHYG-NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSS-CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHcC-cHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            777777888888888888777 455666777778888888888888888877 677777777776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-53  Score=443.06  Aligned_cols=351  Identities=24%  Similarity=0.278  Sum_probs=324.7

Q ss_pred             CCHHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            3 MDPLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      ..++|+.|++.|+.+++++|++.+.++ ..+.+|.||||+|+..|+   .+++++|++.    +..++..+..|.||||+
T Consensus        47 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~----ga~~~~~~~~g~t~L~~  119 (437)
T 1n11_A           47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH---TNMVKLLLEN----NANPNLATTAGHTPLHI  119 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTC---HHHHHHHHHH----TCCTTCCCTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC---HHHHHHHHhC----CCCCCCCCCCCCcHHHH
Confidence            357899999999999999999998887 556689999999999999   9999999883    66778889999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102           82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETP  161 (577)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  161 (577)
                      |+..|+.+++++|++.+.+                .+..+..|.||||+|+..|+.+++++|++++.+++ ..+..|.||
T Consensus       120 A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~  182 (437)
T 1n11_A          120 AAREGHVETVLALLEKEAS----------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTP  182 (437)
T ss_dssp             HHHHTCHHHHHHHHHTTCC----------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCH
T ss_pred             HHHcCCHHHHHHHHhCCCC----------------CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCH
Confidence            9999999999999997655                34578889999999999999999999999998875 678889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHH
Q 008102          162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII  241 (577)
Q Consensus       162 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  241 (577)
                      ||+|+..|+.+++++|++++++++..+..|.||||.|+.. ++.+++++|++.+.+ .+..+..|.||||+|+..|+.++
T Consensus       183 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~  260 (437)
T 1n11_A          183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEM  260 (437)
T ss_dssp             HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHH
Confidence            9999999999999999999999999999999999999999 999999999999987 68889999999999999999999


Q ss_pred             HHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccc
Q 008102          242 AELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV  321 (577)
Q Consensus       242 v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  321 (577)
                      +++|++.+.+.+  ..+..|.||||+|+..|+.+++++|++++.+ ++..|..|+||||+|+..|+.+++++|+++    
T Consensus       261 v~~Ll~~~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----  333 (437)
T 1n11_A          261 VALLLSKQANGN--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH----  333 (437)
T ss_dssp             HHHHHTTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT----
T ss_pred             HHHHHhcCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc----
Confidence            999999998875  3345799999999999999999999999988 788999999999999999999999999998    


Q ss_pred             cccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHHH
Q 008102          322 RNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIREL  387 (577)
Q Consensus       322 ~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~~  387 (577)
                      |+++|.+|..|+||||+|+..+ ...+.++|+++|+|++.+|.+|.||+++|. .++.++++.|+..
T Consensus       334 gad~n~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~  399 (437)
T 1n11_A          334 QADVNAKTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  399 (437)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHCC-hHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence            9999999999999999999999 577788888999999999999999999999 7888888888763

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=6.2e-42  Score=343.68  Aligned_cols=292  Identities=20%  Similarity=0.163  Sum_probs=213.4

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccC-CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNA-KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST  112 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  112 (577)
                      +|+|+||.|+.+|+   .++|++|++    .+..++.++. .|.||||+|+..|+.++|++|++.|++            
T Consensus        24 ~~~t~L~~Av~~g~---~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~------------   84 (337)
T 4g8k_A           24 EDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------------   84 (337)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             CCChHHHHHHHcCC---HHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc------------
Confidence            45778888888888   888888876    3566666554 478888888888888888888887765            


Q ss_pred             HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCC-----
Q 008102          113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE-----  187 (577)
Q Consensus       113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----  187 (577)
                          ++.++..+.+|++.++..++.+++..+++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..     
T Consensus        85 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~  159 (337)
T 4g8k_A           85 ----PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  159 (337)
T ss_dssp             ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-
T ss_pred             ----hhhhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc
Confidence                34567778888888888888888888887777765 56777888888888888888888888887766542     


Q ss_pred             -----CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc----HHHHHHHhcCCCCccchhcC
Q 008102          188 -----GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR----NIIAELLLNSDKSLAYIVDN  258 (577)
Q Consensus       188 -----~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~  258 (577)
                           +..|.||||.|+.. |+.+++++|+++....++..|..|.||++.++..+.    ..++++|+++|++++.  .+
T Consensus       160 ~~~~~~~~g~T~L~~A~~~-g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~--~d  236 (337)
T 4g8k_A          160 DQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--RG  236 (337)
T ss_dssp             ----CTTCSCCHHHHHHHH-TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--CC
T ss_pred             ccccccCCCCcHHHHHHHC-CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--cC
Confidence                 34577888888888 888888888865333367777888888877665433    4577778888777652  23


Q ss_pred             CCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHH
Q 008102          259 DRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL  338 (577)
Q Consensus       259 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~  338 (577)
                      ..|.||||+|+..|+.++++.|++.....++.+|..|+||||+|+..|+.+++++|+++    |+++|.+     ||||+
T Consensus       237 ~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~----GAd~n~~-----~~L~~  307 (337)
T 4g8k_A          237 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCG-----DLVMT  307 (337)
T ss_dssp             GGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT----SCSSTTC-----CHHHH
T ss_pred             CCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCC-----CHHHH
Confidence            36778888888888888888888764444777788888888888888888888888877    7766543     48888


Q ss_pred             HHHhCCccceeccccCcccchhhh
Q 008102          339 LAALCRDSFHRIVPWNVGGDYQAV  362 (577)
Q Consensus       339 A~~~~~~~~~~~lL~~~g~d~~~~  362 (577)
                      |++.+ ...+.++|+++|||+|..
T Consensus       308 A~~~~-~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          308 ARRNY-DHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHHTT-CHHHHHHHHHTTCCC---
T ss_pred             HHHcC-CHHHHHHHHHCcCCCCCC
Confidence            88877 456667777888887753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.8e-42  Score=349.41  Aligned_cols=309  Identities=18%  Similarity=0.132  Sum_probs=267.8

Q ss_pred             cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccc
Q 008102           30 VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGV  109 (577)
Q Consensus        30 ~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  109 (577)
                      ..+..+.++||.|+..|+   .+.++.+   +...+..++.+|..|.||||+|+..|+.++|++|++.|++         
T Consensus        19 ~~~~~~~~~L~~A~~~g~---~~~v~~l---l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------   83 (351)
T 3utm_A           19 LTGEYKKDELLEAARSGN---EEKLMAL---LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---------   83 (351)
T ss_dssp             HHHHHHHHHHHHHHHHTC---HHHHHHH---CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             eeccccchhHHHHHHcCC---HHHHHHH---HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------
Confidence            334467899999999999   9988888   4456777888999999999999999999999999998765         


Q ss_pred             cchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCC
Q 008102          110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP  189 (577)
Q Consensus       110 ~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~  189 (577)
                             ++.+|..|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus        84 -------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  155 (351)
T 3utm_A           84 -------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC  155 (351)
T ss_dssp             -------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             -------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence                   46688899999999999999999999999988876 6788899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhh
Q 008102          190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA  269 (577)
Q Consensus       190 ~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  269 (577)
                      .|.+|++.++.. +..+.+++...             .+++..++..++.+.++.++.......  ..+..|.||||+|+
T Consensus       156 ~g~~~l~~a~~~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~t~L~~A~  219 (351)
T 3utm_A          156 HGKSAVDMAPTP-ELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF--KQPQSHETALHCAV  219 (351)
T ss_dssp             TSCCHHHHCSSH-HHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC--CCTTTCCCHHHHHH
T ss_pred             CCCcchHHHhhh-hhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc--cCCCCCCCHHHHHH
Confidence            999999999877 66666666543             246778888889999888888765432  33457899999999


Q ss_pred             hc---CcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcc
Q 008102          270 GQ---GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS  346 (577)
Q Consensus       270 ~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~  346 (577)
                      ..   +..+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++    |+++|.+|..|+||||+|+..+ ..
T Consensus       220 ~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~n~~d~~g~t~L~~A~~~~-~~  293 (351)
T 3utm_A          220 ASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH----GAKMNALDSLGQTALHRAALAG-HL  293 (351)
T ss_dssp             HCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHHT-CH
T ss_pred             HHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcC-cH
Confidence            99   668999999999998 788999999999999999999999999998    9999999999999999999999 57


Q ss_pred             ceeccccCcccchhhhhhCCCChHHHHhcCCcchHHHHHH
Q 008102          347 FHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE  386 (577)
Q Consensus       347 ~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~l~~  386 (577)
                      .+.++|+++|+|++.+|..|+||+++|.   ..+.++|.+
T Consensus       294 ~~v~~Ll~~gad~~~~~~~g~tal~~a~---~~~~~~l~~  330 (351)
T 3utm_A          294 QTCRLLLSYGSDPSIISLQGFTAAQMGN---EAVQQILSE  330 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHSC---HHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCChhhhhh---HHHHHHHHh
Confidence            7788889999999999999999999984   455566665

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-41  Score=331.37  Aligned_cols=265  Identities=21%  Similarity=0.208  Sum_probs=233.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccC-CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMT-NDEKNTALHEAMQHRSLDVVKILIKEDPAVPY  152 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  152 (577)
                      +|.||||.|++.|+.+++++|++.+.+.                +.. +..|.||||+|+..|+.+++++|++++.++. 
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-   66 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANV----------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-   66 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT----------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCc----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-
Confidence            5789999999999999999999987552                333 7789999999999999999999999988875 


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccC----------
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGET----------  222 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~----------  222 (577)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ .+..          
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~  144 (285)
T 1wdy_A           67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGAN-VNLRRKTKEDQERL  144 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCCCCHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh-CCHHHHHHHHHhCCC-cccccccHHHHHhh
Confidence            6788899999999999999999999999999999999999999999999 999999999999877 3444          


Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHhhhcCc----HHHHHHHHhhCCcccccccCCCCc
Q 008102          223 DRYGWTPLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGK----LRVVEEIISYCPECCELVDGRGWN  297 (577)
Q Consensus       223 d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~d~~g~t  297 (577)
                      +..|.||||.|+..|+.+++++|++. +.+++  ..+..|.||||.|+..++    .+++++|++++.+ ++.+|..|+|
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t  221 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT  221 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCc
Confidence            77899999999999999999999987 77664  334478999999999998    8999999999988 7888999999


Q ss_pred             hhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhh
Q 008102          298 VLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK  364 (577)
Q Consensus       298 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~  364 (577)
                      |||+|+..++.+++++|+++   .+.++|.+|.+|+||||+|+..+ ...+.++|+++|++++.+|.
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~-~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELK-LKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcC-cHHHHHHHHHcCCCCCcccc
Confidence            99999999999999999983   28899999999999999999998 67778888999999998773

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3e-40  Score=331.35  Aligned_cols=289  Identities=20%  Similarity=0.176  Sum_probs=252.7

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhhcCCc--cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNVLGRV--VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      ++.|+.|++.|++++|++|++.|.++  ..+..|.||||+|+.+|+   .+++++|++    .+..++.++..+.++++.
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~---~~iv~~Ll~----~ga~~~~~~~~~~~~~~~   98 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR---EDIVELLLR----HGADPVLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC---HHHHHHHHH----cCCchhhhccCCCchhHH
Confidence            46799999999999999999999887  344469999999999999   999999988    578888999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc---------
Q 008102           82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY---------  152 (577)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~---------  152 (577)
                      ++..++..++..+++.+.+                ++..|..|.||||+|+..|+.+++++|++++++++.         
T Consensus        99 ~~~~~~~~~~~~~~~~~~~----------------~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~  162 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSKGAD----------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE  162 (337)
T ss_dssp             HHHHTCHHHHHHHHTTTCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----
T ss_pred             HHhcccchhhHHhhhccch----------------hhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccc
Confidence            9999999999999887654                567899999999999999999999999999887642         


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHH-hCCCCCCCCCCCCCHHHHHHHcCCC---HHHHHHHHhhCCCccccCCCCCCc
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILE-NCPSVAHEGPSGKTALHAAAVNINS---IDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      ..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.++.....   .+++++|++.+.+ ++.+|..|+|
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t  241 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKT  241 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCC
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCC
Confidence            234568999999999999999999996 4899999999999999998876222   4688999999988 7889999999


Q ss_pred             HHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102          229 PLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD  307 (577)
Q Consensus       229 pL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  307 (577)
                      |||+|+..|+.++++.|++. +.+++  ..+..|.||||+|+..|+.+++++|+++|++ +     ++.+|||+|+.+++
T Consensus       242 ~L~~a~~~~~~~~v~~Ll~~~~~~vn--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~-----n~~~~L~~A~~~~~  313 (337)
T 4g8k_A          242 PLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKTALLLAVELKLKKIAELLCKRGAS-T-----DCGDLVMTARRNYD  313 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHTSTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-S-----TTCCHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHhcCCccc--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-----CCCCHHHHHHHcCC
Confidence            99999999999999999985 55554  3345899999999999999999999999987 3     34679999999999


Q ss_pred             hhHHHHHHhccccccccccCC
Q 008102          308 ASDLKHLLNNYPIVRNLINDK  328 (577)
Q Consensus       308 ~~~v~~Ll~~~~~~~~~~n~~  328 (577)
                      .+++++|+++    |+++|..
T Consensus       314 ~~iv~~Ll~~----GA~~d~~  330 (337)
T 4g8k_A          314 HSLVKVLLSH----GAKEDFH  330 (337)
T ss_dssp             HHHHHHHHHT----TCCC---
T ss_pred             HHHHHHHHHC----cCCCCCC
Confidence            9999999999    8888754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-41  Score=345.54  Aligned_cols=315  Identities=18%  Similarity=0.150  Sum_probs=221.6

Q ss_pred             CCHHHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHH
Q 008102            3 MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVA   82 (577)
Q Consensus         3 ~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A   82 (577)
                      +.++|..|+..|+.+.+..+++.......   -.++++-+...|+   .+++++++.         +..+..|.||||+|
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~---~~~~~~~~~---------~~~~~~g~t~L~~A  101 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYSLYPN---PQGYGNGNDFLGD---FNHTNLQIP---------TEPEPESPIKLHTE  101 (373)
T ss_dssp             ------------------------------------------------------------------------CCCHHHHH
T ss_pred             cccccccccCCccccchhhhhhhhccccC---ccccCCCCCcccc---ccccccccc---------cCCCCCCccHHHHH
Confidence            56778888888898888888875443321   1345667788888   888777643         35688999999999


Q ss_pred             HHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCC-CCCCcHhHHHHHcCCHHHHHHHH--------hcCCCCCcC
Q 008102           83 AKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-DEKNTALHEAMQHRSLDVVKILI--------KEDPAVPYS  153 (577)
Q Consensus        83 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~  153 (577)
                      +..++ +++++|+..                  .++..| ..|.||||+|+..|+.+++++|+        +.|.+++ .
T Consensus       102 a~~~~-~~~~~L~~~------------------~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~  161 (373)
T 2fo1_E          102 AAGSY-AITEPITRE------------------SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-A  161 (373)
T ss_dssp             HHSSS-CCCSCCSTT------------------TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-C
T ss_pred             hcCCc-hHHHHhccc------------------cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-C
Confidence            99654 777777542                  145566 78999999999999998887776        6777775 6


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC--CccccCCCCCCcHHH
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK--SLIGETDRYGWTPLH  231 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~--~~~~~~d~~g~tpL~  231 (577)
                      .|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.  ...+..|..|.||||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~  240 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRNGMTALM  240 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence            788899999999999999999999999999999999999999999999 99999999999872  236888999999999


Q ss_pred             HHHhcC---cHHHHHHHhcCCCCccch------hcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHH
Q 008102          232 YASYFD---RNIIAELLLNSDKSLAYI------VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA  302 (577)
Q Consensus       232 ~A~~~g---~~~~v~~Ll~~~~~~~~~------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  302 (577)
                      +|+..+   +.+++++|++.+.+++..      ..+..|.||||+|+..|+.+++++|+++++..++.+|..|+||||+|
T Consensus       241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A  320 (373)
T 2fo1_E          241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA  320 (373)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHH
T ss_pred             HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHH
Confidence            999988   899999999998887531      12347899999999999999999999888555888999999999999


Q ss_pred             HhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          303 MVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       303 ~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      +..|+.+++++|+++    |+++|.+|..|+||||+|+..+ ...+.++|+++|++
T Consensus       321 ~~~g~~~iv~~Ll~~----gad~~~~d~~g~t~l~~A~~~g-~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          321 AQEGRIEVVMYLIQQ----GASVEAVDATDHTARQLAQANN-HHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHTCHHHHHHHHHT----TCCSSCCCSSSCCHHHHHHHTT-CHHHHHHHHTTC--
T ss_pred             HHcCCHHHHHHHHHc----CCCccCCCCCCCCHHHHHHHcC-CHHHHHHHHhcCcc
Confidence            999999999999998    8999999999999999999998 56677777777765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4e-40  Score=321.88  Aligned_cols=265  Identities=22%  Similarity=0.215  Sum_probs=234.6

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccc-cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSV-NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST  112 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  112 (577)
                      +|+|+||.|+..|+   .+++++|++    .+..++.. +..|.||||+|+..|+.+++++|++.+++            
T Consensus         4 ~g~~~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------   64 (285)
T 1wdy_A            4 EDNHLLIKAVQNED---VDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------------   64 (285)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------
T ss_pred             ccchHHHHHHHcCC---HHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            46789999999999   999999977    34555555 78899999999999999999999998765            


Q ss_pred             HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCC-----
Q 008102          113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHE-----  187 (577)
Q Consensus       113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----  187 (577)
                          ++.+|.+|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+..|+.+++++|+++|++++..     
T Consensus        65 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~  139 (285)
T 1wdy_A           65 ----PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             ----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             ----CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence                35678899999999999999999999999988875 67888999999999999999999999999988876     


Q ss_pred             -----CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc----HHHHHHHhcCCCCccchhcC
Q 008102          188 -----GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR----NIIAELLLNSDKSLAYIVDN  258 (577)
Q Consensus       188 -----~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~  258 (577)
                           +..|.||||.|+.. ++.+++++|++.....++..|..|.||||.|+..++    .+++++|++.+.+++  ..+
T Consensus       140 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~--~~~  216 (285)
T 1wdy_A          140 DQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN--VRG  216 (285)
T ss_dssp             HHHHTTCCCCCHHHHHHHH-TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS--CCC
T ss_pred             HHHhhccCCCcHHHHHHHc-CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC--CcC
Confidence                 77899999999999 999999999998444478899999999999999999    899999999998875  334


Q ss_pred             CCCCcchhHhhhcCcHHHHHHHHh-hCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCC
Q 008102          259 DRKMTALHLAAGQGKLRVVEEIIS-YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDK  330 (577)
Q Consensus       259 ~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~  330 (577)
                      ..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|+++    |++++.+|.
T Consensus       217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~----Ga~~~~~d~  284 (285)
T 1wdy_A          217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKR----GASTDCGDL  284 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SSCSCCSSC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHc----CCCCCcccc
Confidence            579999999999999999999999 5555 888999999999999999999999999998    999998874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.7e-40  Score=329.71  Aligned_cols=318  Identities=21%  Similarity=0.161  Sum_probs=265.2

Q ss_pred             CHHHHHHHHcCCcHHHHHhhhh-cCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHH
Q 008102            4 DPLLYEAAAKGEIEPFKEISNV-LGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHV   81 (577)
Q Consensus         4 ~~~L~~Aa~~g~~~~v~~Ll~~-~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~   81 (577)
                      .++|+.|++.|+.+.+++|+.. +.+. ..+..|.||||+|+.+|+   .+++++|++    .+..++.++..|.||||+
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~----~g~~~~~~~~~g~t~L~~   97 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR---VRIVQLLLQ----HGADVHAKDKGGLVPLHN   97 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC---HHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC---HHHHHHHHH----cCCCCCccCCCCCcHHHH
Confidence            4689999999999999999986 4555 555689999999999999   999999987    577889999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChH
Q 008102           82 AAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETP  161 (577)
Q Consensus        82 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp  161 (577)
                      |+..|+.+++++|++.+++                ++..|..|.||||+|+..|+.+++++|++++.+.. ..+..|.+|
T Consensus        98 A~~~g~~~iv~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~  160 (351)
T 3utm_A           98 ACSYGHYEVTELLLKHGAC----------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSA  160 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred             HHHCCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcc
Confidence            9999999999999998766                46688999999999999999999999999998875 678889999


Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc---Cc
Q 008102          162 LYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF---DR  238 (577)
Q Consensus       162 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~---g~  238 (577)
                      +++|+..+..+.+++....            +++..++.. ++.+.++.++..... ....+..|.||||+|+..   ++
T Consensus       161 l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~  226 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKG------------HSLLQAARE-ADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKR  226 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHH------------HHHHHHHHT-TCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTH
T ss_pred             hHHHhhhhhHHHHHhhhcc------------cHHHHHHHh-ccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccH
Confidence            9999999988888887753            467778888 889999888887665 456778899999999999   66


Q ss_pred             HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcc
Q 008102          239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNY  318 (577)
Q Consensus       239 ~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~  318 (577)
                      .+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..++.+++++|+++ 
T Consensus       227 ~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-  302 (351)
T 3utm_A          227 KQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSY-  302 (351)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred             HHHHHHHHHcCCCcC--CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-
Confidence            899999999998875  3345899999999999999999999999988 788999999999999999999999999998 


Q ss_pred             ccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          319 PIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       319 ~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                         |++++.+|..|+||+|+|.     ..+.++|.+.+.   .....+.+++..|+
T Consensus       303 ---gad~~~~~~~g~tal~~a~-----~~~~~~l~~~~~---~~~~~~~~~l~~A~  347 (351)
T 3utm_A          303 ---GSDPSIISLQGFTAAQMGN-----EAVQQILSESTP---MRTSDVDYRLLEAS  347 (351)
T ss_dssp             ---TCCTTCCCTTSCCHHHHSC-----HHHHHHHHHC-------------------
T ss_pred             ---CCCCCCcCCCCCChhhhhh-----HHHHHHHHhccc---cccCcceeehhhhh
Confidence               9999999999999999983     334445544332   23334445555444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-39  Score=315.01  Aligned_cols=271  Identities=18%  Similarity=0.106  Sum_probs=196.9

Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102           71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV  150 (577)
Q Consensus        71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  150 (577)
                      ....|.|+||+|+..|+.+.+..++..+........     .....++.+|..|.||||+|+..|+.+++++|++.+.++
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~   85 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV   85 (285)
T ss_dssp             -------------------------------CCSEE-----CCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchh-----hhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            456789999999999998877777766533111000     001125678999999999999999999999999999887


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+. +. +..|.|||
T Consensus        86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~-~~-~~~g~t~L  161 (285)
T 3d9h_A           86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV-QP-ESDLASPI  161 (285)
T ss_dssp             C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCS-SC-SCTTSCHH
T ss_pred             C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCC-CC-CCCCCCHH
Confidence            5 6788899999999999999999999999999999999999999999999 9999999999998873 33 44599999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhH
Q 008102          231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD  310 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  310 (577)
                      |+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++.+++ ++ .|..|+||||+|+..++.++
T Consensus       162 ~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~  237 (285)
T 3d9h_A          162 HEAARRGHVECVNSLIAYGGNID--HKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEEL  237 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999988775  3344788999999999999999999999888 44 48889999999999999999


Q ss_pred             HHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCc-ccchhh
Q 008102          311 LKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNV-GGDYQA  361 (577)
Q Consensus       311 v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~-g~d~~~  361 (577)
                      +++|+++    |++++.+|.+|+||||+|+..   ..+.++|+++ |+++..
T Consensus       238 v~~Ll~~----gad~~~~d~~g~t~l~~A~~~---~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          238 ACLLMDF----GADTQAKNAEGKRPVELVPPE---SPLAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHHHHT----TCCTTCCCTTSCCGGGGSCTT---SHHHHHHHHHC------
T ss_pred             HHHHHHC----CCCCCCcCCCCCCHHHHhcCc---cHHHHHHHHhhccCCCC
Confidence            9999988    889999999999999999833   3344444444 666543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.5e-39  Score=313.34  Aligned_cols=253  Identities=19%  Similarity=0.162  Sum_probs=206.3

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCC----------CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPA----------VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS  190 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----------~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  190 (577)
                      ...|.|+||+|+..|+.+.+..++..++.          .....+..|.||||+|+..|+.+++++|++.|++++.++..
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~   91 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD   91 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            45789999999999998777776654322          23457888999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       191 g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      |.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++.  .+ ..|.||||+|+.
T Consensus        92 g~t~L~~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~-~~g~t~L~~A~~  166 (285)
T 3d9h_A           92 HVSPLHEACLG-GHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PE-SDLASPIHEAAR  166 (285)
T ss_dssp             CCCHHHHHHHT-TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CS-CTTSCHHHHHHH
T ss_pred             CCCHHHHHHHC-CcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CC-CCCCCHHHHHHH
Confidence            99999999999 999999999999887 78899999999999999999999999999998874  23 369999999999


Q ss_pred             cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceec
Q 008102          271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRI  350 (577)
Q Consensus       271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~  350 (577)
                      .|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++    |+++|. |..|+||||+|+..+ ...+.+
T Consensus       167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~-~~~g~t~L~~A~~~~-~~~~v~  239 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES----GADVNQ-GKGQDSPLHAVVRTA-SEELAC  239 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TCCTTC-CBTTBCHHHHHHHTT-CHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CCCCCC-CCCCCCHHHHHHHcC-CHHHHH
Confidence            9999999999999998 788999999999999999999999999998    888885 899999999999999 567778


Q ss_pred             cccCcccchhhhhhCCCChHHHHhcCCcchHHHHHH
Q 008102          351 VPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRE  386 (577)
Q Consensus       351 lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~~l~~  386 (577)
                      +|+++|+|++.+|..|+||+++|. ++.++++.|.+
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~-~~~~~~~~Ll~  274 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVP-PESPLAQLFLE  274 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSC-TTSHHHHHHHH
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhc-CccHHHHHHHH
Confidence            888999999999999999999998 45677777776

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-39  Score=331.36  Aligned_cols=308  Identities=15%  Similarity=0.097  Sum_probs=222.4

Q ss_pred             CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102           36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ  115 (577)
Q Consensus        36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  115 (577)
                      ..+|+.++..|+   .+.++.+++....    +.    .-.+++.-+...|+.+++++++..                  
T Consensus        38 ~~~l~~~~~~~~---~~~~~~~~~~~~~----~~----~~~~~~~~~~~~g~~~~~~~~~~~------------------   88 (373)
T 2fo1_E           38 QHSLLEASYDGY---IKRQRNELQHYSL----YP----NPQGYGNGNDFLGDFNHTNLQIPT------------------   88 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCCcc---ccchhhhhhhhcc----cc----CccccCCCCCcccccccccccccc------------------
Confidence            456777777788   7777666542111    10    223456677788888888887653                  


Q ss_pred             hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHH--------HhCCCCCCC
Q 008102          116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL--------ENCPSVAHE  187 (577)
Q Consensus       116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll--------~~~~~~~~~  187 (577)
                         .++..|.||||+|+..++ ++++.|+..  +++...+..|.||||+|+..|+.+++++|+        +.|++++..
T Consensus        89 ---~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~  162 (373)
T 2fo1_E           89 ---EPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM  162 (373)
T ss_dssp             --------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC
T ss_pred             ---CCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence               357889999999999665 788888654  343233378999999999999988877776        789999999


Q ss_pred             CCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC---CCccchhcCCCCCcc
Q 008102          188 GPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD---KSLAYIVDNDRKMTA  264 (577)
Q Consensus       188 ~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~tp  264 (577)
                      |..|.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+   .+++  ..+..|.||
T Consensus       163 d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~d~~g~t~  238 (373)
T 2fo1_E          163 DCDENTPLMLAVLA-RRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE--ELDRNGMTA  238 (373)
T ss_dssp             CTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS--CCCTTSCCH
T ss_pred             CCCCCCHHHHHHHc-ChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh--hcCCCCCCH
Confidence            99999999999999 999999999999988 6889999999999999999999999999987   3443  334589999


Q ss_pred             hhHhhhcC---cHHHHHHHHhhCCcccc-------cccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCc
Q 008102          265 LHLAAGQG---KLRVVEEIISYCPECCE-------LVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNT  334 (577)
Q Consensus       265 L~~A~~~g---~~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~T  334 (577)
                      ||+|+..+   +.+++++|++++++...       ..|..|+||||+|+..|+.+++++|+++   .+.++|.+|.+|+|
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDEDGKT  315 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHH---SCCCTTCCCTTCCC
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHh---cCCCccCcCCCCCC
Confidence            99999998   89999999999988321       3677999999999999999999999987   24899999999999


Q ss_pred             HHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          335 PLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       335 pLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      |||+|+..| ...+.++|+++|+|++.+|..|+||+++|. .++.+++++|.+
T Consensus       316 pL~~A~~~g-~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          316 PIMLAAQEG-RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             HHHHHHHHT-CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHcC-CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999 567778888999999999999999999999 889999998887

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.5e-39  Score=328.34  Aligned_cols=263  Identities=20%  Similarity=0.131  Sum_probs=200.1

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      ..+..|..|.||||+|+..|+.++|++|++.+++                ++.+|..|.||||+|+..|+.+++++|++.
T Consensus        12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~----------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~   75 (364)
T 3ljn_A           12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS----------------PTIQNRFGCTALHLACKFGCVDTAKYLASV   75 (364)
T ss_dssp             ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            3456788889999999999999999999987655                466788899999999999999999999999


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh----CCCCCC-----------------CCCCCCCHHHHHHHcCC--
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN----CPSVAH-----------------EGPSGKTALHAAAVNIN--  203 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~~--  203 (577)
                      +++.   .+..|.||||+|+..|+.+++++|++.    +.+++.                 .+..|.||||+|+.. |  
T Consensus        76 g~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~  151 (364)
T 3ljn_A           76 GEVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL-GPE  151 (364)
T ss_dssp             CCCC---CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS-CGG
T ss_pred             CCCc---cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc-CCc
Confidence            8854   334688999999999999999999998    666655                 667788888888888 7  


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC-----ccchhcCCCCCcchhHhhhcCcHHHHH
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS-----LAYIVDNDRKMTALHLAAGQGKLRVVE  278 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~g~tpL~~A~~~g~~~iv~  278 (577)
                      +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++     ++  ..+..|.||||+|+..|+.++++
T Consensus       152 ~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~  228 (364)
T 3ljn_A          152 YLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANKQGNSHLHWAILINWEDVAM  228 (364)
T ss_dssp             GHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCTTCCCTTHHHHTTTCHHHHH
T ss_pred             hHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc--ccCCCCCcHHHHHHHcCCHHHHH
Confidence            78888888888776 677788888888888888888888888887766     43  23346888888888888888888


Q ss_pred             HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccc--------cccccCCCCCCCcHHHHHHHhCCccceec
Q 008102          279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV--------RNLINDKDKEGNTPLHLLAALCRDSFHRI  350 (577)
Q Consensus       279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--------~~~~n~~d~~G~TpLh~A~~~~~~~~~~~  350 (577)
                      +|++++++ ++.+|..|+||||+|+..|+.+++++|+++....        .......+..|+|||+.|+..++...+..
T Consensus       229 ~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          229 RFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             HHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             HHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence            88888877 6778888888888888888888888888762111        11111245566777777776664444444


Q ss_pred             ccc
Q 008102          351 VPW  353 (577)
Q Consensus       351 lL~  353 (577)
                      +|.
T Consensus       308 ll~  310 (364)
T 3ljn_A          308 LLQ  310 (364)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.4e-38  Score=300.96  Aligned_cols=220  Identities=20%  Similarity=0.207  Sum_probs=153.3

Q ss_pred             hccCCCCCCcHhHHHHHcC-------------CHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC
Q 008102          117 LGMTNDEKNTALHEAMQHR-------------SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPS  183 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  183 (577)
                      ++.+|.+|.||||+|+..|             +.+++++|++.++++....|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5678999999999999987             889999999999888777788899999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCc
Q 008102          184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMT  263 (577)
Q Consensus       184 ~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~t  263 (577)
                      ++..+..|.||||+|+.. ++.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+.+++  ..+..|.|
T Consensus        83 ~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t  159 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKS  159 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCB
T ss_pred             CCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCC
Confidence            999999999999999999 899999999998875578888888888888888888888888888887765  23346778


Q ss_pred             chhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          264 ALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       264 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      |||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++    |++++.+|..|+||||+|++.|
T Consensus       160 ~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~~~g  234 (253)
T 1yyh_A          160 ALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH----FANRDITDHMDRLPRDIAQERM  234 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc----CCCccccccCCCCHHHHHHHcC
Confidence            88888888888888888887777 667777788888888888888888888877    7777778888888888887777


Q ss_pred             C
Q 008102          344 R  344 (577)
Q Consensus       344 ~  344 (577)
                      +
T Consensus       235 ~  235 (253)
T 1yyh_A          235 H  235 (253)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-37  Score=303.61  Aligned_cols=263  Identities=20%  Similarity=0.143  Sum_probs=146.0

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102           68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED  147 (577)
Q Consensus        68 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  147 (577)
                      ++.+|.+|.||||+|+..|+.++|++|++.+++.             ..++.+|..|.||||+|+..|+.+++++|+++|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   68 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-------------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG   68 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-------------ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4678899999999999999999999999987652             125678899999999999999999999999999


Q ss_pred             CCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCC
Q 008102          148 PAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW  227 (577)
Q Consensus       148 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  227 (577)
                      ++++ ..+..|.||||+|+..|+.+++++|++++++.........  +.                 ..   .......+.
T Consensus        69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~--~~-----------------~~---~~~~~~~~~  125 (282)
T 1oy3_D           69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY--LT-----------------QS---QDCTPDTSH  125 (282)
T ss_dssp             CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------
T ss_pred             CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH--hh-----------------cc---cccCcchhc
Confidence            8876 6788899999999999999999999998876432211100  00                 00   001112233


Q ss_pred             cHHHHHHhcCcHHHH-HHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC-CCCchhhHHHhc
Q 008102          228 TPLHYASYFDRNIIA-ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG-RGWNVLHFAMVS  305 (577)
Q Consensus       228 tpL~~A~~~g~~~~v-~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~  305 (577)
                      ++++.++..+..... ..+...+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|+..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          126 APAAVDSQPNPENEEEPRDEDWRLQLE--AENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             ------------------CCCGGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHT
T ss_pred             chhhhccccccchhhhhhhhhhhhcCC--CcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHc
Confidence            333333333222111 11212222221  1222455555555555555555555555554 333332 255555555555


Q ss_pred             CChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       306 ~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      ++.+++++|+++    |+++|.+|..|+||||+|+..+ ...+.++|+++|++++.+|..|.||+++|.
T Consensus       203 ~~~~~v~~Ll~~----gad~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          203 QAASVLELLLKA----GADPTARMYGGRTPLGSALLRP-NPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             TCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHTSS-CHHHHHHHHHTTCCCCCCC-----------
T ss_pred             CCHHHHHHHHHc----CCCCcccccCCCCHHHHHHHcC-CcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            555555555554    5555555555555555555555 344444555555555555555555555554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5e-37  Score=294.72  Aligned_cols=229  Identities=21%  Similarity=0.247  Sum_probs=181.1

Q ss_pred             cccccCCCCcHHHHHHHhC-------------CHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc
Q 008102           68 LQSVNAKGDAPLHVAAKCG-------------HASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH  134 (577)
Q Consensus        68 ~~~~~~~g~t~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~  134 (577)
                      ++.+|.+|.||||+|+..|             +.+++++|++.+++.               ....|..|.||||+|+..
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~---------------~~~~d~~g~t~L~~A~~~   67 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASL---------------HNQTDRTGETALHLAARY   67 (253)
T ss_dssp             ----------------------------------------------------------------CCCTTSCCHHHHHHHT
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCc---------------ccccCCCCCcHHHHHHHc
Confidence            4667788888888888876             899999999987663               234688999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP-SVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       135 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      |+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||.|+.. ++.+++++|++
T Consensus        68 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~  145 (253)
T 1yyh_A           68 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLIN  145 (253)
T ss_dssp             TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH-TCSSHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc-ChHHHHHHHHH
Confidence            99999999999998876 678889999999999999999999999996 8899999999999999999 99999999999


Q ss_pred             hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC
Q 008102          214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG  293 (577)
Q Consensus       214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~  293 (577)
                      .+.+ ++..|..|.||||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus       146 ~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~  221 (253)
T 1yyh_A          146 SHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDH  221 (253)
T ss_dssp             TTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             cCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccc
Confidence            9888 78899999999999999999999999999999876  3345899999999999999999999999999 788999


Q ss_pred             CCCchhhHHHhcCChhHHHHHHhc
Q 008102          294 RGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       294 ~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                      .|+||+|+|+.+|+.+++++|...
T Consensus       222 ~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          222 MDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.9e-37  Score=290.67  Aligned_cols=231  Identities=19%  Similarity=0.136  Sum_probs=199.5

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHh----cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIK----EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK  192 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  192 (577)
                      ++.+|.+|.||||+|++.|+.+++++|++    .+.++ ...|..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            35689999999999999999999999997    45554 47788899999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCCHHHHHHHHhhCCC---ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhh
Q 008102          193 TALHAAAVNINSIDVVKLLLDKKKS---LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA  269 (577)
Q Consensus       193 t~L~~A~~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~  269 (577)
                      ||||.|+.. ++.+++++|++.+..   ..+..|..|.||||+|+..|+.+++++|++.+.+++.. +...|.||||+|+
T Consensus        81 t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~g~t~L~~A~  158 (241)
T 1k1a_A           81 TAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV-DIKSGRSPLIHAV  158 (241)
T ss_dssp             CHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHH
T ss_pred             CHHHHHHHc-CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCcHHHHHH
Confidence            999999999 999999999999872   36788899999999999999999999999999887532 2247899999999


Q ss_pred             hcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcccee
Q 008102          270 GQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHR  349 (577)
Q Consensus       270 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~  349 (577)
                      ..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++    |++++.+|..|+||||+|+..+ ...+.
T Consensus       159 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~tpl~~A~~~~-~~~i~  232 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS----GADSSLKNCHNDTPLMVARSRR-VIDIL  232 (241)
T ss_dssp             HTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTSCCTTTTCSSHH-HHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc----CCCCCCcCCCCCCHHHHHHhcC-cHHHH
Confidence            99999999999999988 788899999999999999999999999998    9999999999999999999888 45555


Q ss_pred             ccccCcc
Q 008102          350 IVPWNVG  356 (577)
Q Consensus       350 ~lL~~~g  356 (577)
                      +.|.+.+
T Consensus       233 ~~l~~~~  239 (241)
T 1k1a_A          233 RGKATRP  239 (241)
T ss_dssp             TC-----
T ss_pred             hhhccCC
Confidence            5555544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.5e-36  Score=288.47  Aligned_cols=219  Identities=24%  Similarity=0.347  Sum_probs=182.5

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH  196 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  196 (577)
                      ++.+|.+|.||||+|+..|+.+++++|++++.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            46688889999999999999999999999988775 66778999999999999999999999999998888889999999


Q ss_pred             HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHH
Q 008102          197 AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRV  276 (577)
Q Consensus       197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~i  276 (577)
                      .|+.. ++.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.++
T Consensus        83 ~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           83 LAAKK-GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHT-TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHc-CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHCCCHHH
Confidence            99998 899999999998865577888888888888888888888888888887764  233467788888888888888


Q ss_pred             HHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCC
Q 008102          277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCR  344 (577)
Q Consensus       277 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~  344 (577)
                      +++|++.+++ ++..|..|+||||+|+..++.+++++|+++    |++++.+|.+|+||||+|+..++
T Consensus       160 ~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          160 AEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR----DSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             HHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT----TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             HHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc----CCCCCccCCCCCCHHHHHHHHHH
Confidence            8888888777 667777788888888888888888888877    77778888888888888877763

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-37  Score=301.62  Aligned_cols=241  Identities=21%  Similarity=0.166  Sum_probs=183.0

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC--CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCH
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV--PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA  194 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  194 (577)
                      ++.+|.+|.||||+|++.|+.+++++|++.+++.  ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4678999999999999999999999999988763  34778889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcH
Q 008102          195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL  274 (577)
Q Consensus       195 L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  274 (577)
                      ||+|+.. ++.+++++|++.++..... ...  +.                +.....    .....+.++++.++..+..
T Consensus        82 L~~A~~~-~~~~~v~~Ll~~~~~~~~~-~~~--~~----------------~~~~~~----~~~~~~~~~~~~~~~~~~~  137 (282)
T 1oy3_D           82 LHLACRV-RAHTCACVLLQPRPSHPRD-ASD--TY----------------LTQSQD----CTPDTSHAPAAVDSQPNPE  137 (282)
T ss_dssp             HHHHTTT-TCHHHHHHHSSSCCSSCCC-C---------------------------------------------------
T ss_pred             HHHHHHc-CCcchhHhhhccCCCCchh-hHH--HH----------------hhcccc----cCcchhcchhhhccccccc
Confidence            9999999 9999999999987762211 110  00                000111    1112466778877776655


Q ss_pred             HHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCC-CCcHHHHHHHhCCccceecccc
Q 008102          275 RVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKE-GNTPLHLLAALCRDSFHRIVPW  353 (577)
Q Consensus       275 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~-G~TpLh~A~~~~~~~~~~~lL~  353 (577)
                      .....++......++..|..|+||||+|+..|+.+++++|+++    |+++|.+|.. |+||||+|+..+ ...+.++|+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~~g~tpL~~A~~~~-~~~~v~~Ll  212 (282)
T 1oy3_D          138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GADLNKPEPTCGRTPLHLAVEAQ-AASVLELLL  212 (282)
T ss_dssp             ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CCCCCCCCCCCCcCHHHHHHHcC-CHHHHHHHH
Confidence            5554444444344788899999999999999999999999998    9999999865 999999999999 567778888


Q ss_pred             CcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          354 NVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       354 ~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      ++|+|++.+|..|.||+++|. .++.+++++|.+
T Consensus       213 ~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  246 (282)
T 1oy3_D          213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (282)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             HcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHH
Confidence            999999999999999999999 888899999887

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.8e-37  Score=313.26  Aligned_cols=258  Identities=17%  Similarity=0.112  Sum_probs=224.0

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH  196 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  196 (577)
                      .+..|.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++.  ..|.||||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~   89 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH   89 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence            45678899999999999999999999999998875 7888999999999999999999999999996553  57999999


Q ss_pred             HHHHcCCCHHHHHHHHhh----CCCcccc-----------------CCCCCCcHHHHHHhcC--cHHHHHHHhcCCCCcc
Q 008102          197 AAAVNINSIDVVKLLLDK----KKSLIGE-----------------TDRYGWTPLHYASYFD--RNIIAELLLNSDKSLA  253 (577)
Q Consensus       197 ~A~~~~~~~~~~~~Ll~~----~~~~~~~-----------------~d~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~  253 (577)
                      +|+.. ++.+++++|++.    +.+ .+.                 .|..|.||||+|+..|  +.+++++|++.+.+++
T Consensus        90 ~A~~~-g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           90 LAVMA-NKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHc-CCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            99999 999999999998    444 333                 7788999999999999  9999999999998875


Q ss_pred             chhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc----cccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCC
Q 008102          254 YIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC----CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKD  329 (577)
Q Consensus       254 ~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d  329 (577)
                        ..+..|.||||+|+..|+.+++++|++++++.    ++..|..|+||||+|+..|+.+++++|+++    |+++|.+|
T Consensus       168 --~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----gad~~~~d  241 (364)
T 3ljn_A          168 --AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM----GIDVNMED  241 (364)
T ss_dssp             --CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT----TCCTTCCC
T ss_pred             --ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCCC
Confidence              33458999999999999999999999998874    678899999999999999999999999998    99999999


Q ss_pred             CCCCcHHHHHHHhCCccceeccccCcccchhh------------hhhCCCChHHHHh-cCCcchH-HHHHH
Q 008102          330 KEGNTPLHLLAALCRDSFHRIVPWNVGGDYQA------------VNKQNISVKHITR-YGFPQLE-QEIRE  386 (577)
Q Consensus       330 ~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~------------~n~~G~t~l~~a~-~~~~~~~-~~l~~  386 (577)
                      .+|+||||+|+..+ ...+.++|+++|++++.            .+..|.||+..|. .++.+.+ +.|.+
T Consensus       242 ~~g~tpL~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          242 NEHTVPLYLSVRAA-MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             TTSCCHHHHHHHTC-CHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhC-hHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHH
Confidence            99999999999999 67778888888988766            5567788888777 4444433 44443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.2e-36  Score=287.89  Aligned_cols=228  Identities=25%  Similarity=0.298  Sum_probs=207.5

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV  200 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  200 (577)
                      +..++||||.|++.|+.+.+++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   82 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS   82 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence            45688999999999999999999999887777889999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102          201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI  280 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  280 (577)
                      . ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|
T Consensus        83 ~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           83 A-GXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             H-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             c-CHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            9 999999999999888 68889999999999999999999999999988875  3344789999999999999999999


Q ss_pred             HhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          281 ISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      ++++.+ ++.+|..|+||||+|+..++.+++++|+++    |++++.+|..|.||||+|+..+ ...+.++|.++|++
T Consensus       159 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~t~l~~A~~~~-~~~i~~lL~~~~a~  230 (231)
T 3aji_A          159 LFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ----GASIYIENKEEKTPLQVAKGGL-GLILKRLAEGEEAS  230 (231)
T ss_dssp             HHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHSCHHH-HHHHHHHHHHHHHC
T ss_pred             HhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHHHhhH-HHHHHHHHcccccc
Confidence            999888 788899999999999999999999999998    8999999999999999998876 56777777777665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3e-36  Score=286.96  Aligned_cols=232  Identities=24%  Similarity=0.315  Sum_probs=204.2

Q ss_pred             cccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC
Q 008102           68 LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED  147 (577)
Q Consensus        68 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~  147 (577)
                      ++.+|.+|.||||+|+..|+.+++++|++......            ..++.+|..|.||||+|+..|+.+++++|++.+
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   69 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG------------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG   69 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC------------CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            46789999999999999999999999998643321            225678999999999999999999999999999


Q ss_pred             CCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC
Q 008102          148 PAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP----SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD  223 (577)
Q Consensus       148 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d  223 (577)
                      .++. ..+..|.||||+|+..|+.+++++|++.++    +++..+..|.||||.|+.. ++.+++++|++.+.+ .+..+
T Consensus        70 ~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~  146 (241)
T 1k1a_A           70 ASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGAD-IDAVD  146 (241)
T ss_dssp             CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCCC
T ss_pred             CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc-CCHHHHHHHHHcCCC-ccccc
Confidence            8875 678889999999999999999999999997    7888999999999999999 999999999999988 56666


Q ss_pred             -CCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHH
Q 008102          224 -RYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA  302 (577)
Q Consensus       224 -~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  302 (577)
                       ..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus       147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA  223 (241)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence             889999999999999999999999998875  3345899999999999999999999999998 788999999999999


Q ss_pred             HhcCChhHHHHHHhc
Q 008102          303 MVSFDASDLKHLLNN  317 (577)
Q Consensus       303 ~~~~~~~~v~~Ll~~  317 (577)
                      +..++.++++.|.++
T Consensus       224 ~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          224 RSRRVIDILRGKATR  238 (241)
T ss_dssp             SSHHHHHHHTC----
T ss_pred             HhcCcHHHHhhhccC
Confidence            999999999999876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-35  Score=281.99  Aligned_cols=228  Identities=26%  Similarity=0.329  Sum_probs=202.3

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      .++..+..|.||||+|+..|+.+++++|++.|.+                ++..+..|.||||+|+..|+.+++++|+++
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   66 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN----------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKA   66 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------------cCccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            3567888999999999999999999999998665                456788899999999999999999999999


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      +.++. ..+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..
T Consensus        67 g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~  143 (237)
T 3b7b_A           67 GALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSD-INIRDNE  143 (237)
T ss_dssp             TCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             CCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC-CCccCCC
Confidence            88765 67788999999999999999999999998 78888899999999999999 999999999998887 6888999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhc
Q 008102          226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS  305 (577)
Q Consensus       226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  305 (577)
                      |.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+
T Consensus       144 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          144 ENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHH
Confidence            9999999999999999999999998875  3345799999999999999999999999988 788899999999999999


Q ss_pred             CChhHHHHHHh
Q 008102          306 FDASDLKHLLN  316 (577)
Q Consensus       306 ~~~~~v~~Ll~  316 (577)
                      ++.+.+..+++
T Consensus       221 ~~~~~~~~l~~  231 (237)
T 3b7b_A          221 SQVWSALQMSK  231 (237)
T ss_dssp             CHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            98876666554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.6e-35  Score=277.67  Aligned_cols=225  Identities=20%  Similarity=0.232  Sum_probs=208.3

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP  151 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  151 (577)
                      +..+.||||.|++.|+.++++.|++.+..               .++..|..|.||||+|+..|+.+++++|++.+.+++
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~   67 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS---------------LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN   67 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh---------------hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC
Confidence            34678999999999999999999997432               256789999999999999999999999999998875


Q ss_pred             cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHH
Q 008102          152 YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH  231 (577)
Q Consensus       152 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~  231 (577)
                       ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||
T Consensus        68 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~  144 (231)
T 3aji_A           68 -DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGAN-PDAKDHYDATAMH  144 (231)
T ss_dssp             -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred             -CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence             6788899999999999999999999999999999999999999999999 999999999999888 7888999999999


Q ss_pred             HHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHH
Q 008102          232 YASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDL  311 (577)
Q Consensus       232 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  311 (577)
                      +|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||+|+|+..++.+++
T Consensus       145 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          145 RAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHH
Confidence            9999999999999999998875  3345899999999999999999999999998 788999999999999999999999


Q ss_pred             HHHHhc
Q 008102          312 KHLLNN  317 (577)
Q Consensus       312 ~~Ll~~  317 (577)
                      ++|.++
T Consensus       222 ~lL~~~  227 (231)
T 3aji_A          222 RLAEGE  227 (231)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            999987

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=292.74  Aligned_cols=216  Identities=19%  Similarity=0.187  Sum_probs=171.0

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC-------CcCCCCCCChHHHHHHHhCCH-HHHHHHHHhCCCCCCCCCC
Q 008102          119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAV-------PYSTNGCGETPLYMAAERGFE-KMLTEILENCPSVAHEGPS  190 (577)
Q Consensus       119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~  190 (577)
                      .+|..+.+||+.|++.|+.++|++|++.+.+.       ....+..|.|||+.|+..+.. .+++.|++.|++++..|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            46778889999999999999999999987653       234566789999999988775 4889999999999999999


Q ss_pred             CCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       191 g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      |.||||+|+.. |+.+++++|++.+.+ ++..+..|.||+|.|+..++.+++++|++.+.+++  ..+..|.||||+|+.
T Consensus        86 G~TpLh~A~~~-g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~~A~~  161 (269)
T 4b93_B           86 GSSPLHVAALH-GRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLIYACS  161 (269)
T ss_dssp             SCCHHHHHHHT-TCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHc-CcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHH
Confidence            99999999999 999999999999988 78889999999999999999999999999998886  334589999999999


Q ss_pred             cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      .|+.+++++|++++++ ++..|..|+||||+|+.+|+.+++++|+++    |+++|.+|.+|+||||+|++++
T Consensus       162 ~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          162 GGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH----GASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHhCC
Confidence            9999999999999998 788999999999999999999999999998    9999999999999999998776

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-36  Score=297.06  Aligned_cols=277  Identities=19%  Similarity=0.133  Sum_probs=227.3

Q ss_pred             HHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCCh
Q 008102           81 VAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGET  160 (577)
Q Consensus        81 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t  160 (577)
                      .++..++.+.++.++............       ......+..|.||||.|+..|+.+++++|++++.+++ ..|..|.|
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t   75 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVK-------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT   75 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCC-------CSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred             hHHHHHHHHHHHHHHcccccccccccc-------CcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            567788888888888765432211110       0012234568899999999999999999999998876 67888999


Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHH
Q 008102          161 PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNI  240 (577)
Q Consensus       161 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~  240 (577)
                      |||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.+++++|++.+.+ ++..|..|.||||+|+..++.+
T Consensus        76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~  153 (299)
T 1s70_B           76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEE  153 (299)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999 999999999999988 7888999999999999999999


Q ss_pred             HHHHHhcC-CCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccc
Q 008102          241 IAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYP  319 (577)
Q Consensus       241 ~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  319 (577)
                      +++.++.. +.+... ... .+.+++        ...++.++..+.......+..|.||||+|+..|+.+++++|+++  
T Consensus       154 ~~~~ll~~~~~~~~~-~~~-~~~~~~--------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--  221 (299)
T 1s70_B          154 LLQNEVNRQGVDIEA-ARK-EEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA--  221 (299)
T ss_dssp             HHHHHHHHHTCCHHH-HHH-HHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT--
T ss_pred             HHHHHHhhcCCCchh-hhh-hhhhHH--------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc--
Confidence            99988874 333221 111 122222        23456667777665667788999999999999999999999998  


Q ss_pred             cccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHhcCCcchHH
Q 008102          320 IVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQ  382 (577)
Q Consensus       320 ~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~~~~~~~~~  382 (577)
                        |+++|.+|.+|+||||+|+..+ ...+.++|+++|+|++.+|..|+||+++|..+..+.++
T Consensus       222 --g~d~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          222 --RYDVNIKDYDGWTPLHAAAHWG-KEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             --TCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred             --CCCCCCcCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence              9999999999999999999999 56778888999999999999999999999754333333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.3e-35  Score=277.28  Aligned_cols=211  Identities=20%  Similarity=0.269  Sum_probs=175.4

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC--CCCCC-CCCCCCCHHHHHHH
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC--PSVAH-EGPSGKTALHAAAV  200 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~  200 (577)
                      |+||||+|++.|+.+++++|++.+++.....+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||.|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6899999999999999999999998877778889999999999999999999999999  55555 77889999999999


Q ss_pred             cCCCHHHHHHHHhhC--CCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHH
Q 008102          201 NINSIDVVKLLLDKK--KSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE  278 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~--~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~  278 (577)
                      . ++.+++++|++.+  .+ .+..+..|.||||.|+..|+.+++++|++++.+++  ..+..|.||||+|+..|+.++++
T Consensus        82 ~-~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~  157 (228)
T 2dzn_A           82 V-GNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIE  157 (228)
T ss_dssp             H-CCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             c-CCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHH
Confidence            8 8999999999887  44 67778888888888888888888888888887765  33446888888888888888888


Q ss_pred             HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHH-hccccccccccCCCCCCCcHHHHHHHh
Q 008102          279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL-NNYPIVRNLINDKDKEGNTPLHLLAAL  342 (577)
Q Consensus       279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll-~~~~~~~~~~n~~d~~G~TpLh~A~~~  342 (577)
                      +|++.++..++.+|..|+||||+|+..++.+++++|+ +.    |++++.+|.+|+||||+|+..
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~----ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY----GAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH----CCCSCCBCTTSCBGGGGCSST
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCcHHHHHHHH
Confidence            8888884447778888888888888888888888888 55    788888888888888888543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.6e-36  Score=288.68  Aligned_cols=224  Identities=22%  Similarity=0.241  Sum_probs=172.7

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCH-HHHHHHHhcCC
Q 008102           70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL-DVVKILIKEDP  148 (577)
Q Consensus        70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~  148 (577)
                      .+|.++.+||+.||+.|+.++|++|++.++....+        ....++..+..|.||||.|+..++. .+++.|++.|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~--------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga   77 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED--------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL   77 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc--------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence            46777889999999999999999999976653221        1223566788999999999998876 48899999998


Q ss_pred             CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      +++ .+|..|.||||+|+..|+.+++++|++.+++++..+..|.||+|.|+.. ++.++++.|++.+.+ ++.+|..|+|
T Consensus        78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~-~n~~d~~g~T  154 (269)
T 4b93_B           78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-GHFQVVKCLLDSNAK-PNKKDLSGNT  154 (269)
T ss_dssp             CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCC-SCCCCTTCCC
T ss_pred             CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCcccccccc-ChHHHHHHHHHCCCC-CCCCCCCCCC
Confidence            886 7888999999999999999999999999999999999999999999999 999999999999988 7899999999


Q ss_pred             HHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102          229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD  307 (577)
Q Consensus       229 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  307 (577)
                      |||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++++
T Consensus       155 pL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          155 PLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999999886  3445899999999999999999999999998 78999999999999988764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.6e-34  Score=272.55  Aligned_cols=220  Identities=21%  Similarity=0.293  Sum_probs=197.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcC--CCCCc
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKED--PAVPY  152 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~  152 (577)
                      |+||||.|++.|+.+++++|++.+...               ....|..|.||||+|+..|+.+++++|++.+  .++..
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL---------------LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG---------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc---------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence            789999999999999999999986542               3457899999999999999999999999998  55554


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhC--CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENC--PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      ..+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus        67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L  144 (228)
T 2dzn_A           67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGAS-VRIKDKFNQIPL  144 (228)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-SCCCCTTSCCHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc-CCHhHHHHHHHcCCC-ccccCCCCCCHH
Confidence            47889999999999999999999999999  88899999999999999999 999999999999888 788999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCC-CCccchhcCCCCCcchhHhhhcCcHHHHHHHH-hhCCcccccccCCCCchhhHHHhcCCh
Q 008102          231 HYASYFDRNIIAELLLNSD-KSLAYIVDNDRKMTALHLAAGQGKLRVVEEII-SYCPECCELVDGRGWNVLHFAMVSFDA  308 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll-~~~~~~~~~~d~~g~t~Lh~A~~~~~~  308 (577)
                      |+|+..|+.+++++|++.+ .+++  ..+..|.||||+|+..|+.+++++|+ +.+.+ ++.+|..|+||+|+|+..   
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---  218 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---  218 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---
T ss_pred             HHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---
Confidence            9999999999999999999 6554  33458999999999999999999999 88888 789999999999999654   


Q ss_pred             hHHHHHHhc
Q 008102          309 SDLKHLLNN  317 (577)
Q Consensus       309 ~~v~~Ll~~  317 (577)
                      ++.++|+++
T Consensus       219 ~~~~~l~~~  227 (228)
T 2dzn_A          219 QVKKFFLNN  227 (228)
T ss_dssp             THHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            667777654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=274.59  Aligned_cols=229  Identities=23%  Similarity=0.262  Sum_probs=203.0

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCC
Q 008102           69 QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP  148 (577)
Q Consensus        69 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  148 (577)
                      +..|..|.||||.|+..|+.+++++|++.+.+                ++.++..|.||||+|+..|+.+++++|+++++
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   66 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD----------------VRQPDKENVTLLHWAAINNRIDLVKYYISKGA   66 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            45678899999999999999999999997655                45678889999999999999999999999999


Q ss_pred             CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      +.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..+..|.|
T Consensus        67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~-~~~~~~~g~t  144 (240)
T 3eu9_A           67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQD-VDMMDQNGMT  144 (240)
T ss_dssp             CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CHHHHHHHHHhcCCC-ccccCCCCCc
Confidence            88877777899999999999999999999999999999999999999999999 999999999999887 6888899999


Q ss_pred             HHHHHHhcCc-HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102          229 PLHYASYFDR-NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD  307 (577)
Q Consensus       229 pL~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  307 (577)
                      |||.|+..++ .+++++|++.+.+++.. +...|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++
T Consensus       145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          145 PLMWAAYRTHSVDPTRLLLTFNVSVNLG-DKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             HHHHHHHHCCSSTTHHHHHHTTCCTTCC-CTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHHHHhCChHHHHHHHHhcCCCcchh-hccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCc
Confidence            9999997666 78899999998887533 223688999999999999999999999888 67888999999999999999


Q ss_pred             hhHHHHHHhc
Q 008102          308 ASDLKHLLNN  317 (577)
Q Consensus       308 ~~~v~~Ll~~  317 (577)
                      .+++++|++.
T Consensus       223 ~~~v~~L~~~  232 (240)
T 3eu9_A          223 VWMINHLQEA  232 (240)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999887

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=292.50  Aligned_cols=241  Identities=22%  Similarity=0.237  Sum_probs=205.7

Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102           71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV  150 (577)
Q Consensus        71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  150 (577)
                      .+.+|.||||.||..|+.++|++|++.|++                ++..|.+|.||||+|+..|+.+++++|+++|+++
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~   99 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANI   99 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            455778999999999999999999998765                4668899999999999999999999999999887


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.++++.++.......+..+..+.+++
T Consensus       100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~  177 (299)
T 1s70_B          100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-AMEELLQNEVNRQGVDIEAARKEEERIM  177 (299)
T ss_dssp             T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH-HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc-chHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence            6 6788899999999999999999999999999999999999999999999 9999999988765543333222233333


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhH
Q 008102          231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD  310 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  310 (577)
                      +        ..++.++..+..... ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.++
T Consensus       178 ~--------~~~~~~l~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~  247 (299)
T 1s70_B          178 L--------RDARQWLNSGHINDV-RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEA  247 (299)
T ss_dssp             H--------HHHHHHHHHTCCCCC-CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             H--------HHHHHHHhccCcchh-hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHH
Confidence            2        334455555544432 2334799999999999999999999999988 78899999999999999999999


Q ss_pred             HHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          311 LKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       311 v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      +++|+++    |++++.+|..|+||||+|+...
T Consensus       248 v~~Ll~~----gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          248 CRILVEN----LCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             HHHHHHT----TCCTTCCCTTSCCTTTSCCSGG
T ss_pred             HHHHHHc----CCCCCCcCCCCCCHHHHHHHHH
Confidence            9999998    9999999999999999996543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.8e-34  Score=270.04  Aligned_cols=217  Identities=19%  Similarity=0.164  Sum_probs=191.3

Q ss_pred             cCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       134 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      .|+.+++++|+++++++....|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~   79 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIR   79 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence            36788899999999998877788999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccC
Q 008102          214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG  293 (577)
Q Consensus       214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~  293 (577)
                      .++...+..+..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|.
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~  156 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNN  156 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc--CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC
Confidence            9886688889999999999999999999999999988875  3344789999999999999999999999888 778899


Q ss_pred             CCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccch
Q 008102          294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDY  359 (577)
Q Consensus       294 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~  359 (577)
                      .|+||||+|+..++.+++++|+++    |++++.+|..|.||||+|+..+ ...+.++|+++|+..
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~----ga~~~~~~~~g~t~l~~A~~~~-~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDH----FANRDITDHMDRLPRDIAQERM-HHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCSS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHc----CCCCccccccCCCHHHHHHHhc-chHHHHHHHHcCCCc
Confidence            999999999999999999999998    8899999999999999999998 566677777777653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.6e-34  Score=269.95  Aligned_cols=233  Identities=17%  Similarity=0.154  Sum_probs=188.2

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHH
Q 008102          118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALH  196 (577)
Q Consensus       118 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~  196 (577)
                      +..|..|.||||.|++.|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++++++++..+ ..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            3467788899999999999999999999887765 667789999999999999999999999998776544 44889999


Q ss_pred             HHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc-HH
Q 008102          197 AAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK-LR  275 (577)
Q Consensus       197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~-~~  275 (577)
                      .|+.. ++.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|++.+.++.  ..+..|.||||.|+..++ .+
T Consensus        82 ~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           82 WATRQ-GHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCSST
T ss_pred             HHHHc-CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHHHHHHhCChHH
Confidence            99998 899999999988877 67788888999999999999999999998887765  334478888888886555 78


Q ss_pred             HHHHHHhhCCcccccccC-CCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102          276 VVEEIISYCPECCELVDG-RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN  354 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~  354 (577)
                      ++++|++.+++ ++..+. .|+||||+|+.+++.+++++|+++    |++++.+|..|+||||+|++.+ ...+.++|++
T Consensus       158 ~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~-~~~~v~~L~~  231 (240)
T 3eu9_A          158 PTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRK-NVWMINHLQE  231 (240)
T ss_dssp             THHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcC-cHHHHHHHHH
Confidence            88888888887 555565 788888888888888888888887    8888888888888888888888 5566666666


Q ss_pred             cccchhh
Q 008102          355 VGGDYQA  361 (577)
Q Consensus       355 ~g~d~~~  361 (577)
                      .|++...
T Consensus       232 ~~~~~~~  238 (240)
T 3eu9_A          232 ARQAKGY  238 (240)
T ss_dssp             HC-----
T ss_pred             hhhccCc
Confidence            6665543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.2e-34  Score=283.01  Aligned_cols=227  Identities=17%  Similarity=0.107  Sum_probs=182.4

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALH  196 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  196 (577)
                      ++.+|.+|.||||+|+..|+.+++++|++++.+++..   +|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            4668888999999999999999999999988776533   4889999999999999999999999988888888999999


Q ss_pred             HHHHcCCCHHHHHHHHhhCCCccccCCCCC-CcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH
Q 008102          197 AAAVNINSIDVVKLLLDKKKSLIGETDRYG-WTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR  275 (577)
Q Consensus       197 ~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  275 (577)
                      +|+.. ++.+++++|++.+.+ ++..+..| .||||+|+..|+.+++++|++++++..   +...|.||||+|+..|+.+
T Consensus       101 ~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~g~~~  175 (285)
T 3kea_A          101 YAVDS-GNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAILLSCIHITIKNGHVD  175 (285)
T ss_dssp             HHHHT-TCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCSTHHHHHHHHHHTTCHH
T ss_pred             HHHHc-CCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccCCccHHHHHHHcChHH
Confidence            99988 889999999988877 67778888 788888888888888888888877652   2226778888888888888


Q ss_pred             HHHHHHhhCCcccccccCCCCch-hhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102          276 VVEEIISYCPECCELVDGRGWNV-LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN  354 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~  354 (577)
                      ++++|++++++ ++.+|..|+|| ||+|+..++.+++++|+++    |+++|.+|.       .|+..+ ...+.++|++
T Consensus       176 ~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~----gad~~~~~~-------~a~~~~-~~~iv~~Ll~  242 (285)
T 3kea_A          176 MMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY----DINIYSANL-------ENVLLD-DAEIAKMIIE  242 (285)
T ss_dssp             HHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS----CBCSTTTTG-------GGGTTT-CHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc----CCCCCCCCh-------hhhhcC-CHHHHHHHHH
Confidence            88888888777 67778888886 8888888888888888887    778877773       344455 5666677777


Q ss_pred             cccchhhhhh
Q 008102          355 VGGDYQAVNK  364 (577)
Q Consensus       355 ~g~d~~~~n~  364 (577)
                      +|++++..+.
T Consensus       243 ~g~~~~~~~~  252 (285)
T 3kea_A          243 KHVEYKSDSY  252 (285)
T ss_dssp             HHHHHTTCTT
T ss_pred             cCCCCCCccc
Confidence            7777665443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.7e-34  Score=278.75  Aligned_cols=229  Identities=17%  Similarity=0.174  Sum_probs=201.6

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      .++.+|..|.||||+|+..|+.++|++|++.|++.                +..  +|.||||+|+..|+.+++++|+++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------~~~--~g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK----------------NLL--ENEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG----------------SCC--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------------CCC--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence            47889999999999999999999999999987662                333  489999999999999999999999


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCC-CCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSG-KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      |++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||.|+.. ++.+++++|++.+++..+  ...
T Consensus        85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~--~~~  160 (285)
T 3kea_A           85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFD--LAI  160 (285)
T ss_dssp             TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHT-TCHHHHHHHHTTSCTTCC--CST
T ss_pred             CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCcccc--ccC
Confidence            99876 678899999999999999999999999999999999999 8999999999 999999999999876422  128


Q ss_pred             CCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcc-hhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHh
Q 008102          226 GWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTA-LHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV  304 (577)
Q Consensus       226 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tp-L~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  304 (577)
                      |.||||+|+..|+.+++++|+++|++++  ..+..|.|| ||+|+..|+.+++++|+++|++ ++..|       +.|+.
T Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~  230 (285)
T 3kea_A          161 LLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVL  230 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGT
T ss_pred             CccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhh
Confidence            9999999999999999999999988875  334478897 9999999999999999999988 55555       46788


Q ss_pred             cCChhHHHHHHhccccccccccCCCCC
Q 008102          305 SFDASDLKHLLNNYPIVRNLINDKDKE  331 (577)
Q Consensus       305 ~~~~~~v~~Ll~~~~~~~~~~n~~d~~  331 (577)
                      .++.+++++|+++    |.+++..+..
T Consensus       231 ~~~~~iv~~Ll~~----g~~~~~~~~~  253 (285)
T 3kea_A          231 LDDAEIAKMIIEK----HVEYKSDSYT  253 (285)
T ss_dssp             TTCHHHHHHHHHH----HHHHTTCTTT
T ss_pred             cCCHHHHHHHHHc----CCCCCCcccc
Confidence            9999999999998    7777655443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.7e-35  Score=291.66  Aligned_cols=276  Identities=13%  Similarity=0.023  Sum_probs=182.0

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch-
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST-  112 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~-  112 (577)
                      ...+|+|.    ..   .+++++|++    .|..++..+..|.|+++     |+.++|+.|++.|.++........... 
T Consensus        22 ~~~~~~~~----~~---~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~   85 (327)
T 1sw6_A           22 RTAGPIIT----FT---HDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNND   85 (327)
T ss_dssp             ---CCEEE----CC---TTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------
T ss_pred             ccccchhh----hc---CchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcc
Confidence            44566663    44   567777766    78889999999999987     999999999999987432100000000 


Q ss_pred             HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102          113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK  192 (577)
Q Consensus       113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  192 (577)
                      ...--........+.+|.|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~  165 (327)
T 1sw6_A           86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE  165 (327)
T ss_dssp             ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred             cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            00000001112234468888888899999999999988755899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCC---HHHHHHHHhhCCCccccCCCCCCcHHHHHHh----cCcHHHHHHHhcCCC---------------
Q 008102          193 TALHAAAVNINS---IDVVKLLLDKKKSLIGETDRYGWTPLHYASY----FDRNIIAELLLNSDK---------------  250 (577)
Q Consensus       193 t~L~~A~~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~---------------  250 (577)
                      ||||+|+.. ++   .++++.|++.+...++..|..|+||||+|+.    .|+.+++++|++.+.               
T Consensus       166 TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          166 SCLVKAVKS-VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CHHHHHHHh-cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            999999998 77   6778888887754578899999999999999    899999999998743               


Q ss_pred             -----CccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccc
Q 008102          251 -----SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI  325 (577)
Q Consensus       251 -----~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~  325 (577)
                           +++  ..+..|.||||.|+.      +++|++++   ++.+|..|+||||+|+.+|+.+++++|+++    |+++
T Consensus       245 ~~~g~~~~--~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~----Gad~  309 (327)
T 1sw6_A          245 NEKESKPN--DKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY----GADP  309 (327)
T ss_dssp             -----------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT----TCCT
T ss_pred             hcccCCcc--cccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCC
Confidence                 222  122345555555553      45555542   344455555555555555555555555554    5555


Q ss_pred             cCCCCCCCcHHHHHHH
Q 008102          326 NDKDKEGNTPLHLLAA  341 (577)
Q Consensus       326 n~~d~~G~TpLh~A~~  341 (577)
                      |.+|.+|+||||+|++
T Consensus       310 ~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          310 FIANKSGLRPVDFGAG  325 (327)
T ss_dssp             TCCCTTSCCGGGGTCC
T ss_pred             cccCCCCCCHHHHHHh
Confidence            5555555555555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.9e-33  Score=260.47  Aligned_cols=197  Identities=23%  Similarity=0.292  Sum_probs=128.1

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102           70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA  149 (577)
Q Consensus        70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  149 (577)
                      ..+..|.||||+|+..|+.+++++|++.+++                ++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus        20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~   83 (223)
T 2f8y_A           20 QTDRTGETALHLAARYSRSDAAKRLLEASAD----------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT   83 (223)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3466677777777777777777777765544                344566677777777777777777777776664


Q ss_pred             CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       150 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.||
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~  161 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGAN-KDMQNNREETP  161 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCcCH
Confidence            4445666667777777777777777777777766666666677777777666 667777777666655 45666666666


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCc
Q 008102          230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE  286 (577)
Q Consensus       230 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  286 (577)
                      ||+|+..|+.+++++|++++++++  ..+..|.||+|+|+..|+.+++++|++++..
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            666666666666666666666553  2233556666666666666666666665544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-34  Score=287.93  Aligned_cols=260  Identities=14%  Similarity=0.085  Sum_probs=201.7

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP  151 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  151 (577)
                      +..+.+|+|    ..+.++|++|++.|++                ++..+..|.|+++     |+.++++.|+++|.+..
T Consensus        20 ~~~~~~~~~----~~~~dlv~~ll~~ga~----------------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~   74 (327)
T 1sw6_A           20 NDRTAGPII----TFTHDLTSDFLSSPLK----------------IMKALPSPVVNDN-----EQKMKLEAFLQRLLFPE   74 (327)
T ss_dssp             -----CCEE----ECCTTCCCSTTTSSCC----------------CEECBCCCCCCCH-----HHHHHHHHHHHHHHC--
T ss_pred             ccccccchh----hhcCchHHHHhhCCcc----------------cccCCCCCCcccC-----chhHHHHHHHHhccCCc
Confidence            345567776    3566789999998776                5668889999988     99999999999875532


Q ss_pred             cC----------------CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 008102          152 YS----------------TNGCGETPLYMAAERGFEKMLTEILENCPSVAH-EGPSGKTALHAAAVNINSIDVVKLLLDK  214 (577)
Q Consensus       152 ~~----------------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~~Ll~~  214 (577)
                      ..                ......+.+|.|+..+..++++.|++.|++++. .+..|.||||+|+.. |+.+++++|++.
T Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~  153 (327)
T 1sw6_A           75 IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKH  153 (327)
T ss_dssp             -----------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred             cccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence            10                111122345888888889999999999999999 899999999999999 999999999999


Q ss_pred             CCCccccCCCCCCcHHHHHHhcCc---HHHHHHHhcCC-CCccchhcCCCCCcchhHhhh----cCcHHHHHHHHhh---
Q 008102          215 KKSLIGETDRYGWTPLHYASYFDR---NIIAELLLNSD-KSLAYIVDNDRKMTALHLAAG----QGKLRVVEEIISY---  283 (577)
Q Consensus       215 ~~~~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~---  283 (577)
                      +.+ ++.+|..|+||||+|+..|+   .++++.|++.+ .+++  ..+..|.||||+|+.    .|+.+++++|++.   
T Consensus       154 Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~--~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~  230 (327)
T 1sw6_A          154 GSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI--LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG  230 (327)
T ss_dssp             TCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG--EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             CCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc--CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            988 78999999999999999998   56777777765 3332  344589999999999    9999999999987   


Q ss_pred             -----------------CCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCcc
Q 008102          284 -----------------CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS  346 (577)
Q Consensus       284 -----------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~  346 (577)
                                       +.+ ++.+|..|+||||.|+.      +++|+++      ++|.+|.+|+||||+|+..+ ..
T Consensus       231 ~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~------~~n~~d~~G~TpLh~A~~~g-~~  296 (327)
T 1sw6_A          231 WIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN------MLNAQDSNGDTCLNIAARLG-NI  296 (327)
T ss_dssp             HHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH------TTTCCCTTSCCHHHHHHHHC-CH
T ss_pred             HHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh------CCCCCCCCCCCHHHHHHHcC-CH
Confidence                             455 67889999999999986      8888875      58999999999999999999 56


Q ss_pred             ceeccccCcccchhhhhhCCCChHHHHh
Q 008102          347 FHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       347 ~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      .+.++|+++|+|++.+|..|+||+++|+
T Consensus       297 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          297 SIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            7778888999999999999999999997

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=8.2e-33  Score=262.41  Aligned_cols=214  Identities=19%  Similarity=0.153  Sum_probs=148.0

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC---CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102          119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPA---VPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL  195 (577)
Q Consensus       119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  195 (577)
                      .+|.+|.||||+|+..|+.+++++|++.+..   .....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            4688999999999999999999999988653   2346788899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCC-----ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          196 HAAAVNINSIDVVKLLLDKKKS-----LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       196 ~~A~~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      |+|+.. ++.+++++|++.+..     ..+..+..|.||||+|+..|+.+++++|++.+++++.. +...|.||||+|+.
T Consensus        83 ~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           83 HLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHH
Confidence            999999 999999999988753     23455566666666666666666666666666555321 11145666666666


Q ss_pred             cCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccccccc--CCCCCCCcHHHHH
Q 008102          271 QGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN--DKDKEGNTPLHLL  339 (577)
Q Consensus       271 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n--~~d~~G~TpLh~A  339 (577)
                      .|+.+++++|++++++ ++.+|..|+||||+|+.+++.+++++|+++    |++..  .++.+|.||.+.+
T Consensus       161 ~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~----ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          161 LQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL----TLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             TTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT----SCGGGSSCCCCCTTTCCCCC
T ss_pred             cCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc----chhhhhcCCccchHHHHhhh
Confidence            6666666666666555 455566666666666666666666666655    44333  4555555555443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.98  E-value=3.3e-33  Score=265.13  Aligned_cols=219  Identities=20%  Similarity=0.268  Sum_probs=155.2

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102           70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA  149 (577)
Q Consensus        70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  149 (577)
                      .+|.+|.||||+|+..|+.+++++|++.+....            ..++..|..|.||||+|+..|+.+++++|+++|.+
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   70 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL------------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD   70 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----C------------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccH------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            456777888888888888888888877765321            12456777788888888888888888888877776


Q ss_pred             CCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC
Q 008102          150 VPYSTNGCGETPLYMAAERGFEKMLTEILENCPS------VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD  223 (577)
Q Consensus       150 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d  223 (577)
                      ++ ..+..|.||||+|+..|+.+++++|++.+++      .+..+..|.||||+|+.. ++.+++++|++.+.+ ++..+
T Consensus        71 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~  147 (236)
T 1ikn_D           71 PE-LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGAD-VNAQE  147 (236)
T ss_dssp             SC-CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHHTCC-TTCCC
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCCC
Confidence            64 5667778888888888888888888887755      345666788888888887 788888888887777 56666


Q ss_pred             C-CCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCccc-ccccCCCCchhhH
Q 008102          224 R-YGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECC-ELVDGRGWNVLHF  301 (577)
Q Consensus       224 ~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~-~~~d~~g~t~Lh~  301 (577)
                      . .|.||||+|+..|+.+++++|+++|++++  ..+..|.||||+|+..|+.+++++|++++++.. ...+..|.|+.+.
T Consensus       148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~  225 (236)
T 1ikn_D          148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT  225 (236)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhh
Confidence            5 78888888888888888888888877765  334467888888888888888888888887633 3567777777776


Q ss_pred             HHhc
Q 008102          302 AMVS  305 (577)
Q Consensus       302 A~~~  305 (577)
                      +...
T Consensus       226 ~~~~  229 (236)
T 1ikn_D          226 ESEF  229 (236)
T ss_dssp             C---
T ss_pred             hccc
Confidence            5543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.4e-31  Score=251.62  Aligned_cols=204  Identities=21%  Similarity=0.245  Sum_probs=143.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHH-HHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC-
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEI-AKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP-  151 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-  151 (577)
                      .|+||||.|++.|+.+++++|++. +.+                ++.+|..|.||||+|+..|+.+++++|++.+++.. 
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~   65 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCE----------------VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF   65 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCC----------------cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence            478999999999999999999986 433                46678889999999999999999999999887653 


Q ss_pred             ---cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          152 ---YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       152 ---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                         ...|..|.||||+|+..|+.+++++|+++|++++..+...  .++                    ...+..|..|.|
T Consensus        66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~~~--------------------~~~~~~~~~g~t  123 (232)
T 2rfa_A           66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS--VFH--------------------YRPHNLIYYGEH  123 (232)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--GGS--------------------CCTTCSCCCCSS
T ss_pred             ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc--cee--------------------ecccccccCCCC
Confidence               3456688999999999999999999999998887765421  000                    002334455666


Q ss_pred             HHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHH----HHHHhhCCccc-----ccccCCCCchh
Q 008102          229 PLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVV----EEIISYCPECC-----ELVDGRGWNVL  299 (577)
Q Consensus       229 pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv----~~Ll~~~~~~~-----~~~d~~g~t~L  299 (577)
                      |||+|+..|+.+++++|+++|++++  ..+..|.||||+|+..|+.+++    ++|++.+++..     +.+|..|+|||
T Consensus       124 ~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl  201 (232)
T 2rfa_A          124 PLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF  201 (232)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence            6666666666666666666665553  2233566666666666666655    66666665522     46677777777


Q ss_pred             hHHHhcCChhHHHHHHhc
Q 008102          300 HFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       300 h~A~~~~~~~~v~~Ll~~  317 (577)
                      |+|+.+|+.+++++|+++
T Consensus       202 ~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          202 KLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhc
Confidence            777777777777777776

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.3e-30  Score=237.94  Aligned_cols=192  Identities=18%  Similarity=0.205  Sum_probs=156.4

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102          122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN  201 (577)
Q Consensus       122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  201 (577)
                      ..+.||||.|+..|+.+.++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            46789999999999999999999988744557788899999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC-CCccchhcCCCCCcchhHhhhcCc-----HH
Q 008102          202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD-KSLAYIVDNDRKMTALHLAAGQGK-----LR  275 (577)
Q Consensus       202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~tpL~~A~~~g~-----~~  275 (577)
                       ++.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.+ .+++  ..+..|.||||+|+..++     .+
T Consensus        83 -~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           83 -GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             -TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             -CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHHHHHHhccchhhHHH
Confidence             99999999997666557788888888888888888888888888877 4443  223367777777777776     77


Q ss_pred             HHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          276 VVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                      ++++|++++++ ++.+|..|+||||+|+.+++.+++++|+++
T Consensus       160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            77777777777 566777777777777777777777777765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.5e-30  Score=240.29  Aligned_cols=191  Identities=21%  Similarity=0.261  Sum_probs=90.6

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchH
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA  113 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  113 (577)
                      .+.||||.|+..|+   .+.++.+++   ..+..++..+..|.||||+|+..|+.+++++|++.|++             
T Consensus         4 ~~~~~L~~A~~~g~---~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------   64 (201)
T 3hra_A            4 YEVGALLEAANQRD---TKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-------------   64 (201)
T ss_dssp             CCTTHHHHHHHTTC---HHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------------
T ss_pred             ccccHHHHHHHhcc---HHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------------
Confidence            34445555555555   444444422   23334444444555555555555555555555544333             


Q ss_pred             HHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCC
Q 008102          114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGK  192 (577)
Q Consensus       114 ~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~  192 (577)
                         ++.+|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++| .+++.++..|.
T Consensus        65 ---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  141 (201)
T 3hra_A           65 ---INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY  141 (201)
T ss_dssp             ---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSC
T ss_pred             ---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCC
Confidence               23344445555555555555555555553333222344444555555555555555555555554 44444444555


Q ss_pred             CHHHHHHHcCCC-----HHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcC
Q 008102          193 TALHAAAVNINS-----IDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNS  248 (577)
Q Consensus       193 t~L~~A~~~~~~-----~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  248 (577)
                      ||||.|+.. ++     .+++++|++.+.+ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus       142 t~L~~A~~~-~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          142 TALIEAVGL-REGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             CHHHHHHHS-SCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             CHHHHHHHh-ccchhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            555555544 33     4445555544444 344444444444444444444444444443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.6e-31  Score=255.35  Aligned_cols=209  Identities=23%  Similarity=0.209  Sum_probs=173.2

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCcccccc----ccCCCCcHHHHHHHh---CCHHHHHHHHHHHHcCCchhh
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQS----VNAKGDAPLHVAAKC---GHASVVTALIEIAKKQPKELE  106 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~  106 (577)
                      .|+||||.|+..|+   .+.++.+++.+...+..++.    .+..|.||||+|+..   |+.+++++|++.+++......
T Consensus         1 ~G~t~L~~A~~~g~---~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGV---PEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred             CCccHHHHHHHcCC---HHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence            47899999999999   98777776655556777777    899999999999999   999999999999987532000


Q ss_pred             ccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCC-------------CChHHHHHHHhCCHHH
Q 008102          107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC-------------GETPLYMAAERGFEKM  173 (577)
Q Consensus       107 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~  173 (577)
                           ........+|..|.||||+|+..|+.+++++|+++|++++ ..+..             |.||||+|+..|+.++
T Consensus        78 -----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~  151 (256)
T 2etb_A           78 -----LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV  151 (256)
T ss_dssp             -----GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred             -----hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                 0000112355789999999999999999999999998876 44443             9999999999999999


Q ss_pred             HHHHHH---hCCCCCCCCCCCCCHHHHHHH--cCCCHH-------HHHHHHhhCCCcc------ccCCCCCCcHHHHHHh
Q 008102          174 LTEILE---NCPSVAHEGPSGKTALHAAAV--NINSID-------VVKLLLDKKKSLI------GETDRYGWTPLHYASY  235 (577)
Q Consensus       174 v~~Ll~---~~~~~~~~~~~g~t~L~~A~~--~~~~~~-------~~~~Ll~~~~~~~------~~~d~~g~tpL~~A~~  235 (577)
                      +++|++   +|++++.+|..|+||||+|+.  . ++.+       ++++|++.+.+..      +.+|..|.||||+|+.
T Consensus       152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~-~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          152 VTYLLENPHQPASLEATDSLGNTVLHALVMIAD-NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHhccccCCCcCccCCCCCCHHHHHHHccc-CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence            999999   899999999999999999998  6 7888       9999999887731      7788888888888888


Q ss_pred             cCcHHHHHHHhcCCCCc
Q 008102          236 FDRNIIAELLLNSDKSL  252 (577)
Q Consensus       236 ~g~~~~v~~Ll~~~~~~  252 (577)
                      .|+.+++++|++++.+.
T Consensus       231 ~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          231 EGKIEIFRHILQREFSG  247 (256)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHhCCCCC
Confidence            88888888888877654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=8.2e-31  Score=254.42  Aligned_cols=207  Identities=21%  Similarity=0.253  Sum_probs=169.8

Q ss_pred             ccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccc----cccCCCCcHHHHHHHh---CCHHHHHHHHHHHHcCCc
Q 008102           31 THNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQ----SVNAKGDAPLHVAAKC---GHASVVTALIEIAKKQPK  103 (577)
Q Consensus        31 ~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~  103 (577)
                      .+..|.||||.|+..|+   .++++.|++.....+..++    ..+..|.||||+|+..   |+.++|++|++.+++...
T Consensus         9 ~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSN---CQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             --CCCHHHHHHHHHTTC---SSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCcccchHHHHHHHcCC---HHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            44589999999999999   9999999886555555554    4588999999999987   999999999999986432


Q ss_pred             hhhccccchHHHhhcc----CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC-------------CCCChHHHHHH
Q 008102          104 ELESGVESTARQMLGM----TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN-------------GCGETPLYMAA  166 (577)
Q Consensus       104 ~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~g~tpL~~A~  166 (577)
                               ...+++.    .|..|.||||+|+..|+.+++++|+++|++++...+             ..|.||||+|+
T Consensus        86 ---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           86 ---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             ---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             ---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHH
Confidence                     1222332    677899999999999999999999999988864333             26999999999


Q ss_pred             HhCCHHHHHHHHH---hCCCCCCCCCCCCCHHHHHHHcCCC---------HHHHHHHHhhCCCcc------ccCCCCCCc
Q 008102          167 ERGFEKMLTEILE---NCPSVAHEGPSGKTALHAAAVNINS---------IDVVKLLLDKKKSLI------GETDRYGWT  228 (577)
Q Consensus       167 ~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~t  228 (577)
                      ..|+.+++++|++   .|++++.+|..|+||||+|+.. ++         .+++++|++.+.+..      +.+|..|.|
T Consensus       157 ~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~T  235 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV-ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT  235 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred             HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc-cCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCC
Confidence            9999999999999   8899999999999999999988 66         788888888877632      247778888


Q ss_pred             HHHHHHhcCcHHHHHHHhcCCC
Q 008102          229 PLHYASYFDRNIIAELLLNSDK  250 (577)
Q Consensus       229 pL~~A~~~g~~~~v~~Ll~~~~  250 (577)
                      |||+|+..|+.+++++|+++|+
T Consensus       236 pL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          236 PLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHhChHHHHHHHHHCCC
Confidence            8888888888888888888777

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=4.2e-31  Score=256.46  Aligned_cols=235  Identities=17%  Similarity=0.148  Sum_probs=140.5

Q ss_pred             ccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHH
Q 008102           67 LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKIL  143 (577)
Q Consensus        67 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~L  143 (577)
                      ..+..+..|.||||.|++.|+.++|+.|++.+.+...++..        .....|..|.||||+|+..   |+.+++++|
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~L   76 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALL   76 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHH
Confidence            34568899999999999999999999999987654322110        0114588999999999987   999999999


Q ss_pred             HhcCCCCC----------cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          144 IKEDPAVP----------YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       144 l~~~~~~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      ++.+++..          ...|..|.||||+|+..|+.+++++|+++|++++..+..+.       ..            
T Consensus        77 l~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~-------~~------------  137 (273)
T 2pnn_A           77 LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF-------FK------------  137 (273)
T ss_dssp             HHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG-------GS------------
T ss_pred             HHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc-------cc------------
Confidence            99875421          12566899999999999999999999999999888776210       00            


Q ss_pred             hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhc---CCCCccchhcCCCCCcchhHhhhcCc---------HHHHHHHH
Q 008102          214 KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN---SDKSLAYIVDNDRKMTALHLAAGQGK---------LRVVEEII  281 (577)
Q Consensus       214 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~tpL~~A~~~g~---------~~iv~~Ll  281 (577)
                        .......+..|.||||+|+..|+.+++++|++   .+.+++  ..+..|.||||+|+..|+         .+++++|+
T Consensus       138 --~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~--~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll  213 (273)
T 2pnn_A          138 --KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS--ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL  213 (273)
T ss_dssp             --SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT--CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             --cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce--eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence              00012223344444444444444444444444   444432  122244455555554444         45555555


Q ss_pred             hhCCccc------ccccCCCCchhhHHHhcCChhHHHHHHhccccccc-cccCCCCCCCcHH
Q 008102          282 SYCPECC------ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRN-LINDKDKEGNTPL  336 (577)
Q Consensus       282 ~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~-~~n~~d~~G~TpL  336 (577)
                      +++++..      +.+|..|+||||+|+..|+.+++++|+++    |+ ++...+..+.+|-
T Consensus       214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR----EIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH----HTC-------------
T ss_pred             HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC----CCCCchhhhhhhhhcc
Confidence            5555421      24566666666666666666666666666    55 5555555555543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2e-30  Score=249.13  Aligned_cols=193  Identities=21%  Similarity=0.214  Sum_probs=133.5

Q ss_pred             CCCcHHHHHHHhCCHHHH----HHHHHHHHcCCchhhccccchHHHhhcc----CCCCCCcHhHHHHHc---CCHHHHHH
Q 008102           74 KGDAPLHVAAKCGHASVV----TALIEIAKKQPKELESGVESTARQMLGM----TNDEKNTALHEAMQH---RSLDVVKI  142 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~Lh~A~~~---g~~~~v~~  142 (577)
                      .|+||||.|+..|+.+.|    ++|++.+.+                ++.    +|..|.||||+|+..   |+.+++++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~----------------i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~   64 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY----------------LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP   64 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC----------------TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------cccccccCCCCCCCHHHHHHHccccchHHHHHH
Confidence            378999999999999854    555555544                344    789999999999999   99999999


Q ss_pred             HHhcCCCCCcC----------CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC-------------CCCHHHHHH
Q 008102          143 LIKEDPAVPYS----------TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS-------------GKTALHAAA  199 (577)
Q Consensus       143 Ll~~~~~~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~  199 (577)
                      |++.+++....          .|..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+
T Consensus        65 Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  144 (256)
T 2etb_A           65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA  144 (256)
T ss_dssp             HHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHH
T ss_pred             HHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHH
Confidence            99987665422          3467999999999999999999999999999888775             555555555


Q ss_pred             HcCCCHHHHHHHHh---hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH-
Q 008102          200 VNINSIDVVKLLLD---KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR-  275 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~-  275 (577)
                      .. ++.+++++|++   .+.+ ++..|..|+||||+|+..+                                 .++.+ 
T Consensus       145 ~~-~~~~~v~~Ll~~~~~ga~-~n~~d~~g~TpLh~A~~~~---------------------------------~~~~~~  189 (256)
T 2etb_A          145 CT-KQWDVVTYLLENPHQPAS-LEATDSLGNTVLHALVMIA---------------------------------DNSPEN  189 (256)
T ss_dssp             HT-TCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHC---------------------------------CSCHHH
T ss_pred             Hc-CCHHHHHHHHhccccCCC-cCccCCCCCCHHHHHHHcc---------------------------------cCCchh
Confidence            55 55555555555   3333 3444455555555554400                                 44444 


Q ss_pred             ------HHHHHHhhCCccc------ccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          276 ------VVEEIISYCPECC------ELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       276 ------iv~~Ll~~~~~~~------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                            ++++|++++++..      +.+|..|+||||+|+..|+.+++++|+++
T Consensus       190 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          190 SALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence                  5555555555521      55666666666666666666666666665

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3e-29  Score=223.52  Aligned_cols=158  Identities=31%  Similarity=0.431  Sum_probs=126.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      ++|+.||+.|+.++|+.|++.|++                ++.+|.+|.||||+|+..++.++++.|++.+.+++ .+|.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad----------------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~   68 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD----------------VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS   68 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence            468888888888888888887766                45678888888888888888888888888887765 6777


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|++.+.+ ++.+|.+|+||||+|+..
T Consensus        69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~  146 (169)
T 4gpm_A           69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREH  146 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence            788888888888888888888888888888888888888888888 888888888888777 677888888888888888


Q ss_pred             CcHHHHHHHhcCCCCcc
Q 008102          237 DRNIIAELLLNSDKSLA  253 (577)
Q Consensus       237 g~~~~v~~Ll~~~~~~~  253 (577)
                      |+.+++++|+++|+++.
T Consensus       147 g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          147 GNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TCHHHHHHHHTC-----
T ss_pred             CCHHHHHHHHHCCCCcC
Confidence            88888888888887764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=8.1e-30  Score=245.52  Aligned_cols=209  Identities=22%  Similarity=0.214  Sum_probs=172.1

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCcccccccc----CCCCcHHHHHH---HhCCHHHHHHHHHHHHcCCchhh
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVN----AKGDAPLHVAA---KCGHASVVTALIEIAKKQPKELE  106 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~----~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~~~~~~~  106 (577)
                      .++++||.|+..|+   .+.++.|++.+...+..++..+    ..|.||||+|+   +.|+.+++++|++.+++......
T Consensus         4 ~~~~~L~~A~~~g~---~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            4 FNRPILFDIVSRGS---PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCHHHHHHHHHHTC---GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            67899999999999   9988888776555666666554    77999999999   67999999999999987432100


Q ss_pred             ccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC--------------CCCChHHHHHHHhCCHH
Q 008102          107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN--------------GCGETPLYMAAERGFEK  172 (577)
Q Consensus       107 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~  172 (577)
                           .....++..|..|.||||+|+..|+.+++++|+++|++++ ..+              ..|.||||+|+..|+.+
T Consensus        81 -----~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  154 (260)
T 3jxi_A           81 -----FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH  154 (260)
T ss_dssp             -----HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred             -----hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence                 0011234456689999999999999999999999998886 444              57999999999999999


Q ss_pred             HHHHHHH---hCCCCCCCCCCCCCHHHHHHHcCCC---------HHHHHHHHhhCCCcc------ccCCCCCCcHHHHHH
Q 008102          173 MLTEILE---NCPSVAHEGPSGKTALHAAAVNINS---------IDVVKLLLDKKKSLI------GETDRYGWTPLHYAS  234 (577)
Q Consensus       173 ~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~~---------~~~~~~Ll~~~~~~~------~~~d~~g~tpL~~A~  234 (577)
                      ++++|++   .|++++.+|..|.||||+|+.. ++         .+++++|++.+.+..      +..|..|.||||+|+
T Consensus       155 ~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          155 IVHYLTENGHKQADLRRQDSRGNTVLHALVAI-ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHHHhccccCCCCcccCCCCCcHHHHHHHh-ccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence            9999999   8999999999999999999987 65         689999999887631      568888888888888


Q ss_pred             hcCcHHHHHHHhcCCCCc
Q 008102          235 YFDRNIIAELLLNSDKSL  252 (577)
Q Consensus       235 ~~g~~~~v~~Ll~~~~~~  252 (577)
                      ..|+.+++++|++++.+.
T Consensus       234 ~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          234 KTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhCCCc
Confidence            888888888888887655

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.8e-28  Score=218.44  Aligned_cols=156  Identities=30%  Similarity=0.391  Sum_probs=94.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      ++|+.|++.|+.++|+.|+++|++++ .+|..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.. ++.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCH
Confidence            45666666666666666666666654 5566666666666666666666666666666666666666666666666 666


Q ss_pred             HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCC
Q 008102          206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCP  285 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  285 (577)
                      +++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++.|++++  ..+..|.||||+|+..|+.+++++|+++|+
T Consensus        84 ~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           84 EVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            666666666655 45556666666666666666666666666555543  222345555555555555555555555555


Q ss_pred             c
Q 008102          286 E  286 (577)
Q Consensus       286 ~  286 (577)
                      +
T Consensus       161 ~  161 (169)
T 4gpm_A          161 W  161 (169)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.8e-32  Score=273.16  Aligned_cols=280  Identities=18%  Similarity=0.128  Sum_probs=177.6

Q ss_pred             ccceeeee-cCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102           37 TILHVNII-SRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ  115 (577)
Q Consensus        37 t~Lh~A~~-~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  115 (577)
                      +.+++|.. .++   .+.++++++           .+.++.||||+|++.|+.++|++|++.++...             
T Consensus        67 l~~~~a~~~~~~---~~~~~~l~~-----------~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~-------------  119 (376)
T 2aja_A           67 LCLYYAHYNRNA---KQLWSDAHK-----------KGIKSEVICFVAAITGCSSALDTLCLLLTSDE-------------  119 (376)
T ss_dssp             HHHHHHHTTTTC---TTHHHHHHH-----------HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCS-------------
T ss_pred             HHHHHHHhcCCC---HHHHHHHHH-----------cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHH-------------
Confidence            34454444 344   555655543           34455689999999999999999888765211             


Q ss_pred             hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCC--CCCCC
Q 008102          116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH--EGPSG  191 (577)
Q Consensus       116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g  191 (577)
                      .....+..|.||||+|++.|+.+++++|++++++..  ...+.+ .||||+|+..|+.+++++|+++|++++.  .+..|
T Consensus       120 ~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g  198 (376)
T 2aja_A          120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  198 (376)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCC
Confidence            012244567789999999999999999988886421  112222 7889999999999999999988888766  77778


Q ss_pred             CCHHHHHH-HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          192 KTALHAAA-VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       192 ~t~L~~A~-~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      .||||.|+ .. |+.+++++|++.+.        .|.||||.|+..|+.+++++|++.+++...      ..++++.|+.
T Consensus       199 ~TpL~~Aa~~~-G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~------~~~~l~~A~~  263 (376)
T 2aja_A          199 YYAFRWAAVGR-GHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKE------MHDAFKLSNP  263 (376)
T ss_dssp             HHHHHHHHSTT-CCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH------HHTTTTTTSS
T ss_pred             CCHHHHHHHHC-CCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccc------ccHHHHHHHH
Confidence            88888888 88 88888888888543        277888888888888888888888766531      2247788888


Q ss_pred             cCcHHHH------------HHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhcccccccc--ccCCCCCCCcHH
Q 008102          271 QGKLRVV------------EEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNL--INDKDKEGNTPL  336 (577)
Q Consensus       271 ~g~~~iv------------~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--~n~~d~~G~TpL  336 (577)
                      +|+.+++            +.++..+..                   +..+.+++|++. +.....  ....++.++|||
T Consensus       264 ~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~Ll~~-~~vk~l~~~g~~~n~~~~~L  323 (376)
T 2aja_A          264 DGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFLLSI-PGIKALAPTATIPGDANELL  323 (376)
T ss_dssp             SSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHHHTS-TTTGGGSSCCSSTTCCCHHH
T ss_pred             CCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHHHhC-hhhhhhhccCCCCCCccHHH
Confidence            8877643            333433211                   123445555543 111111  122345678999


Q ss_pred             HHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHH
Q 008102          337 HLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQE  383 (577)
Q Consensus       337 h~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~  383 (577)
                      |+|+..| ...+.++|++.   ...++..|+|+++++. .|+.++.+.
T Consensus       324 ~~A~~~g-~~e~v~lLl~~---~~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          324 RLALRLG-NQGACALLLSI---PSVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             HHHHHHT-CTTHHHHHTTS---HHHHHSCC------------------
T ss_pred             HHHHHcC-cHHHHHHHHcC---hHHHHHHHHhccccccccccccHHHH
Confidence            9999999 45666666665   4889999999999998 777777654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3e-29  Score=241.54  Aligned_cols=200  Identities=22%  Similarity=0.212  Sum_probs=134.9

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHH----HHHcCCchhhccccchHHHhhccCCCCCCcHhHHHH---HcCCHHHHHHHH
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIE----IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAM---QHRSLDVVKILI  144 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~---~~g~~~~v~~Ll  144 (577)
                      +..|.|+||.|++.|+.+.++.|++    .+.+.+..            -...|..|.||||+|+   +.|+.+++++|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~------------~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll   69 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE------------EFREPSTGKTCLPKALLNLSAGRNDTIPILL   69 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG------------GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh------------hhhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence            4578899999999999997666666    54432110            0124578999999999   779999999999


Q ss_pred             hcCCCC----------CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC--------------CCCCCHHHHHHH
Q 008102          145 KEDPAV----------PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG--------------PSGKTALHAAAV  200 (577)
Q Consensus       145 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------~~g~t~L~~A~~  200 (577)
                      +.+.+.          ....|..|.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+.
T Consensus        70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  149 (260)
T 3jxi_A           70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC  149 (260)
T ss_dssp             HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred             HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence            986432          12345579999999999999999999999999998887              456777777777


Q ss_pred             cCCCHHHHHHHHh---hCCCccccCCCCCCcHHHHHHhcCc---------HHHHHHHhcCCCCccc-----hhcCCCCCc
Q 008102          201 NINSIDVVKLLLD---KKKSLIGETDRYGWTPLHYASYFDR---------NIIAELLLNSDKSLAY-----IVDNDRKMT  263 (577)
Q Consensus       201 ~~~~~~~~~~Ll~---~~~~~~~~~d~~g~tpL~~A~~~g~---------~~~v~~Ll~~~~~~~~-----~~~~~~g~t  263 (577)
                      . ++.+++++|++   .+.+ ++.+|..|+||||+|+..++         .+++++|++.|++++.     ...+..|.|
T Consensus       150 ~-g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~t  227 (260)
T 3jxi_A          150 T-NQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS  227 (260)
T ss_dssp             T-TCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCC
T ss_pred             c-CCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCC
Confidence            6 66777777776   5555 56666666666666666554         4555555555544421     112224444


Q ss_pred             chhHhhhcCcHHHHHHHHhhCC
Q 008102          264 ALHLAAGQGKLRVVEEIISYCP  285 (577)
Q Consensus       264 pL~~A~~~g~~~iv~~Ll~~~~  285 (577)
                      |||+|+..|+.+++++|+++++
T Consensus       228 pL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          228 PLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCC
Confidence            4444444444444444444443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.6e-27  Score=218.20  Aligned_cols=165  Identities=25%  Similarity=0.304  Sum_probs=144.2

Q ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102           66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK  145 (577)
Q Consensus        66 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  145 (577)
                      ..++.+|..|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   89 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK----------------LEDKDIEGSTALIWAVKNNRLGIAEKLLS   89 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc----------------cccccccCccHHHHHHHcCCHHHHHHHHH
Confidence            34577888999999999999999999999998765                45678889999999999999999999999


Q ss_pred             cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCC
Q 008102          146 EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRY  225 (577)
Q Consensus       146 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~  225 (577)
                      .+++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..
T Consensus        90 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~  166 (192)
T 2rfm_A           90 KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGAD-ISARDLT  166 (192)
T ss_dssp             HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCBCTT
T ss_pred             CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCC
Confidence            988775 6778899999999999999999999999999999999999999999998 899999999998877 6788888


Q ss_pred             CCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          226 GWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       226 g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                      |.||||+|+..|+.+++++|++.+
T Consensus       167 g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          167 GLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999998888754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.7e-29  Score=234.69  Aligned_cols=205  Identities=15%  Similarity=0.176  Sum_probs=162.6

Q ss_pred             HHHHHhcCCCCC--cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102          140 VKILIKEDPAVP--YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS  217 (577)
Q Consensus       140 v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~  217 (577)
                      ++.|++++.+..  ...+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.+.+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCC
Confidence            456777766554  34456678889999999999999999999999999999999999999999 999999999999887


Q ss_pred             ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHh--hhcCcHHHHHHHHhhCCcccccccCCC
Q 008102          218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA--AGQGKLRVVEEIISYCPECCELVDGRG  295 (577)
Q Consensus       218 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g  295 (577)
                       ++..|..|+||||+|+..|+.+++++|++.+++++. .++..|.||||+|  +..|+.+++++|++.+++ ++..|..|
T Consensus        80 -~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~  156 (229)
T 2vge_A           80 -VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA-TTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGA  156 (229)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGE
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCc
Confidence             788899999999999999999999999999888753 2334789999999  899999999999999888 67788888


Q ss_pred             CchhhHHHhcCChhHHHHHHhcccccccc--ccCCCCCCCcHHHHHHHhCCccceeccccCc
Q 008102          296 WNVLHFAMVSFDASDLKHLLNNYPIVRNL--INDKDKEGNTPLHLLAALCRDSFHRIVPWNV  355 (577)
Q Consensus       296 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~--~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~  355 (577)
                      .+++|.++..+..   ++|++.    |++  ++.+|.+|+||||+|+..|+...+.+.+++.
T Consensus       157 ~~~l~~~~~~~~~---~~ll~~----ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~  211 (229)
T 2vge_A          157 VYALWDYSAEFGD---ELSFRE----GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGL  211 (229)
T ss_dssp             EEESSCBCCSSTT---BCCBCT----TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEES
T ss_pred             hHHHHHHhhcccc---ccCccc----cccccccccCCCcccHHHHHHHcCCcceeehhhhhh
Confidence            8998866554433   455665    555  7888999999999999998777776655543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=231.89  Aligned_cols=191  Identities=23%  Similarity=0.265  Sum_probs=111.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      +.+++|.|+..|+.+.++.+++.+.+              ..++.+|.+|.||||+|+..|+.+++++|++.++......
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~  141 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ  141 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC
Confidence            34556666666666666666665432              2355566666666666666666666666666666333456


Q ss_pred             CCCCChHHHHHH-----HhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          155 NGCGETPLYMAA-----ERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       155 ~~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      +..|.||||+|+     ..++.+++++|++.|.+.+..+..|.||||+|+.. |+.+++++|++.+.+ ++..|..|+||
T Consensus       142 ~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~gad-~n~~d~~G~Tp  219 (276)
T 4hbd_A          142 NRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSH-GRVDVVKALLACEAD-VNVQDDDGSTA  219 (276)
T ss_dssp             CTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCC-CCCCCCCCCCH
Confidence            666666666666     44566666666666665555566666666666666 666666666666555 45555556666


Q ss_pred             HHHHHhcCcHHHHHHHhc-CCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          230 LHYASYFDRNIIAELLLN-SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       230 L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      ||+|+..|+.+++++|++ .+.+++  ..+..|.||||+|+..|+.+++++|+++
T Consensus       220 Lh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          220 LMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            666555555555555555 444443  1222445555555555555555555443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=9.4e-28  Score=232.86  Aligned_cols=193  Identities=20%  Similarity=0.250  Sum_probs=172.8

Q ss_pred             CCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchH
Q 008102           34 NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA  113 (577)
Q Consensus        34 ~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~  113 (577)
                      ...+++|.|+..|+   .+.++.+++...  ...++.+|.+|.||||+|+..|+.++|++|++.++..            
T Consensus        75 ~~~~~l~~a~~~~~---~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~------------  137 (276)
T 4hbd_A           75 ACRSDAHPELVRRH---LVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK------------  137 (276)
T ss_dssp             HHSTTCCHHHHHHH---HHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC------------
T ss_pred             HhccCCCHHHHHHH---HHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc------------
Confidence            34689999999999   999988866321  2347889999999999999999999999999987621            


Q ss_pred             HHhhccCCCCCCcHhHHHH-----HcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC
Q 008102          114 RQMLGMTNDEKNTALHEAM-----QHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG  188 (577)
Q Consensus       114 ~~~l~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  188 (577)
                         ++..|..|.||||+|+     ..++.++++.|++.+.... ..+..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       138 ---~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d  213 (276)
T 4hbd_A          138 ---VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD  213 (276)
T ss_dssp             ---TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ---CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence               4678999999999999     6689999999999986654 678889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCCHHHHHHHHh-hCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          189 PSGKTALHAAAVNINSIDVVKLLLD-KKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       189 ~~g~t~L~~A~~~~~~~~~~~~Ll~-~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                      ..|.||||+|+.. ++.+++++|++ .+.+ ++.+|..|.||||+|+..|+.+++++|+++.
T Consensus       214 ~~G~TpLh~A~~~-g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          214 DDGSTALMCACEH-GHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TTSCCHHHHHHHH-TCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHC-CCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999 99999999999 5666 7899999999999999999999999999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=4.8e-27  Score=210.95  Aligned_cols=169  Identities=19%  Similarity=0.205  Sum_probs=94.3

Q ss_pred             CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102           36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ  115 (577)
Q Consensus        36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  115 (577)
                      .+|||.|+..|+   .++++.+++   ..+..++.++..|.||||+|+..|+.+++++|++.+++               
T Consensus         3 ~~~L~~A~~~g~---~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------   61 (172)
T 3v30_A            3 SLSIHQLAAQGE---LDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---------------   61 (172)
T ss_dssp             -CCHHHHHHTTC---HHHHHHHHT---TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---------------
T ss_pred             hhhHHHHHHcCC---HHHHHHHHH---cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------
Confidence            456666666666   666655533   23344555566666666666666666666666665443               


Q ss_pred             hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102          116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL  195 (577)
Q Consensus       116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  195 (577)
                       ++..|..|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus        62 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  139 (172)
T 3v30_A           62 -PHILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM  139 (172)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             -chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence             23455556666666666666666666666655543 4455566666666666666666666666666666666666666


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      |+|+.. ++.+++++|++++.+ ....+..|.||
T Consensus       140 ~~A~~~-~~~~~~~~L~~~~~~-~~~~~~~~~~p  171 (172)
T 3v30_A          140 DLAVAL-GYRKVQQVIENHILK-LFQSNLVPADP  171 (172)
T ss_dssp             HHHHHH-TCHHHHHHHHHHHHH-HSCC-------
T ss_pred             HHHHHh-CcHHHHHHHHHHHHH-HhcccCCCCCC
Confidence            666666 666666666665554 33444444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.4e-27  Score=208.92  Aligned_cols=159  Identities=23%  Similarity=0.265  Sum_probs=120.6

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      ...||||.|+..|+.+++++|++.+.+                ++.+|..|.||||+|+. |+.+++++|++.+.+++ .
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~   65 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-L   65 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-C
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC----------------ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-C
Confidence            345788888888888888888775443                35567778888888877 88888888888777664 5


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA  233 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  233 (577)
                      ++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.+..+..|..|.||||+|
T Consensus        66 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A  144 (162)
T 1ihb_A           66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLA  144 (162)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHccCCCCCCcCCCCCcHHHHH
Confidence            677778888888888888888888888888877788888888888877 7888888888877765577777777888888


Q ss_pred             HhcCcHHHHHHHhcCCCC
Q 008102          234 SYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       234 ~~~g~~~~v~~Ll~~~~~  251 (577)
                      +..|+.+++++|+++|++
T Consensus       145 ~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          145 RLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHTTCHHHHHHHHHTC--
T ss_pred             HHcCCHHHHHHHHHhCCC
Confidence            877777888877777653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=8.9e-29  Score=232.77  Aligned_cols=204  Identities=18%  Similarity=0.064  Sum_probs=169.3

Q ss_pred             HHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCC
Q 008102           91 VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF  170 (577)
Q Consensus        91 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  170 (577)
                      ++.|++.+.++..             .+..+..|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+
T Consensus         1 v~~ll~~~~~~~~-------------~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~   66 (229)
T 2vge_A            1 MRSVLRKAGSPRK-------------ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGAN   66 (229)
T ss_dssp             ---------CCCC-------------CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             CeehhccCCCCcc-------------ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCC
Confidence            4567777766432             24466778899999999999999999999998876 688899999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCC-CCCCcHHHHH--HhcCcHHHHHHHhc
Q 008102          171 EKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETD-RYGWTPLHYA--SYFDRNIIAELLLN  247 (577)
Q Consensus       171 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d-~~g~tpL~~A--~~~g~~~~v~~Ll~  247 (577)
                      .+++++|++.|++++..|..|.||||+|+.. ++.+++++|++.+.+ ++..+ ..|.||||+|  +..|+.+++++|++
T Consensus        67 ~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~  144 (229)
T 2vge_A           67 YSIVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLAD  144 (229)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence            9999999999999999999999999999999 999999999999988 45554 7999999999  99999999999999


Q ss_pred             CCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc-cccccCCCCchhhHHHhcCChhHHHHHH
Q 008102          248 SDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVDGRGWNVLHFAMVSFDASDLKHLL  315 (577)
Q Consensus       248 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  315 (577)
                      .|++++.  .+..+.+|++.++..+..   +.|++.+++. ++.+|..|+||||+|+.+|+.++++..+
T Consensus       145 ~ga~~~~--~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          145 VEQSMGL--MNSGAVYALWDYSAEFGD---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             HHHHTTT--SGGGEEEESSCBCCSSTT---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cCCCccc--ccCCchHHHHHHhhcccc---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            9988753  334688999977666544   5667777763 5678999999999999999999998643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=7.5e-27  Score=209.67  Aligned_cols=158  Identities=25%  Similarity=0.254  Sum_probs=107.4

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      +.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-G   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-T
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-C
Confidence            457888888888888888888888775567788888888888888888888888888888888888888888888887 7


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            88888888777666 45566666666666666666666665555554442  1122344444444444444444444444


Q ss_pred             CC
Q 008102          284 CP  285 (577)
Q Consensus       284 ~~  285 (577)
                      ++
T Consensus       158 ~~  159 (172)
T 3v30_A          158 IL  159 (172)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.2e-26  Score=212.29  Aligned_cols=164  Identities=20%  Similarity=0.187  Sum_probs=134.8

Q ss_pred             HhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCH
Q 008102          115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA  194 (577)
Q Consensus       115 ~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~  194 (577)
                      ..++.+|..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus        26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (192)
T 2rfm_A           26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP  104 (192)
T ss_dssp             HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            3467788899999999999999999999999887765 677789999999999999999999999999888888889999


Q ss_pred             HHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcH
Q 008102          195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKL  274 (577)
Q Consensus       195 L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~  274 (577)
                      ||+|+.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+.++.  ..+..|.||+|+|+..|+.
T Consensus       105 L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          105 LMWSIIF-GYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HHHHHHH-TCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHHc-CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHHHHHHhCcH
Confidence            9999988 888999998888877 67778888888888888888888888888777664  2334677777777777777


Q ss_pred             HHHHHHHhh
Q 008102          275 RVVEEIISY  283 (577)
Q Consensus       275 ~iv~~Ll~~  283 (577)
                      +++++|++.
T Consensus       181 ~~v~~Ll~~  189 (192)
T 2rfm_A          181 EVIKIFTEV  189 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777777764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=1.3e-26  Score=207.14  Aligned_cols=159  Identities=19%  Similarity=0.241  Sum_probs=117.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      .|.||||.|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++++.+++ .
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~   64 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV----------------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L   64 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC----------------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence            467777888887888877777776533                45567777777777777777777777777776654 5


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHH
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA  233 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A  233 (577)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|
T Consensus        65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A  142 (167)
T 3v31_A           65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGAD-PTIETDSGYNSMDLA  142 (167)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence            566777777777777777777777777777777777777777777777 777777777777666 566777777777777


Q ss_pred             HhcCcHHHHHHHhcCCCC
Q 008102          234 SYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       234 ~~~g~~~~v~~Ll~~~~~  251 (577)
                      +..|+.+++++|++++.+
T Consensus       143 ~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          143 VALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHH
Confidence            777777777777765443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.6e-26  Score=205.47  Aligned_cols=160  Identities=25%  Similarity=0.353  Sum_probs=115.0

Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102           71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV  150 (577)
Q Consensus        71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  150 (577)
                      ....+.|+||.|++.|+.++|++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++++.++
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   73 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD----------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV   73 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344556777777777777777777776544                3456677777777777777777777777777665


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus        74 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~l  150 (169)
T 2y1l_E           74 N-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGAD-VNAQDKFGKTAF  150 (169)
T ss_dssp             T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             C-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence            4 5566677777777777777777777777777777777777777777777 777777777777766 566677777777


Q ss_pred             HHHHhcCcHHHHHHHhcCC
Q 008102          231 HYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~  249 (577)
                      |+|+..|+.+++++|++.|
T Consensus       151 ~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          151 DISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHhCCHHHHHHHHHcC
Confidence            7777777777777777653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=4e-26  Score=203.88  Aligned_cols=159  Identities=25%  Similarity=0.292  Sum_probs=127.9

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102          123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI  202 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  202 (577)
                      .|.||||.|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+.. 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK-   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-
Confidence            57889999999999999999998887654 6777888999999999999999999988888888888888888888888 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS  282 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  282 (577)
                      ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.++.  ..+..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            888888888888777 67777788888888888888888888887777664  233467777777777777777777777


Q ss_pred             hCCc
Q 008102          283 YCPE  286 (577)
Q Consensus       283 ~~~~  286 (577)
                      ++++
T Consensus       157 ~~~~  160 (167)
T 3v31_A          157 HLLK  160 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=3.6e-26  Score=203.01  Aligned_cols=158  Identities=23%  Similarity=0.247  Sum_probs=120.2

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102          123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI  202 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  202 (577)
                      ...||||.|++.|+.+++++|++++.+++ ..+..|.||||+|+. |+.+++++|+++|++++.++..|.||||.|+.. 
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-
Confidence            35688888888888888888888887764 667778888888888 888888888888888888888888888888888 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHh
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS  282 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  282 (577)
                      ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++.... .+..|.||||+|+..|+.+++++|++
T Consensus        81 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            888888888887766 5677777777777777777777777777776654222 22356667777776666677766666


Q ss_pred             hCC
Q 008102          283 YCP  285 (577)
Q Consensus       283 ~~~  285 (577)
                      +|+
T Consensus       159 ~GA  161 (162)
T 1ihb_A          159 NGA  161 (162)
T ss_dssp             TC-
T ss_pred             hCC
Confidence            664

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=1.3e-25  Score=197.40  Aligned_cols=150  Identities=23%  Similarity=0.270  Sum_probs=116.2

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC
Q 008102           76 DAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN  155 (577)
Q Consensus        76 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  155 (577)
                      .||||.|++.|+.+++++|++.+.+.                + .+..|.||||+|+..|+.+++++|++.+.+++ ..+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~----------------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~   64 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC----------------C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence            47788888888888888888776531                1 46677888888888888888888888777664 566


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          156 GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       156 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|.||||+|+.
T Consensus        65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~  142 (153)
T 1awc_B           65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGAD-VHTQSKFCKTAFDISID  142 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHH
Confidence            7788888888888888888888888888887788888888888887 788888888887776 56777778888888888


Q ss_pred             cCcHHHHHHH
Q 008102          236 FDRNIIAELL  245 (577)
Q Consensus       236 ~g~~~~v~~L  245 (577)
                      .|+.+++++|
T Consensus       143 ~~~~~i~~~L  152 (153)
T 1awc_B          143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            8887777765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1e-25  Score=200.82  Aligned_cols=161  Identities=24%  Similarity=0.282  Sum_probs=138.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      .|.+|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            56778999999999999999999999776666677888999999999999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE  279 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~  279 (577)
                      .. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.+++  ..+..|.||+|+|+. |+.+++++
T Consensus        84 ~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~a~~-~~~~i~~~  158 (165)
T 3twr_A           84 SY-GHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLDLVKD-GDTDIQDL  158 (165)
T ss_dssp             HT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred             Hc-CcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhHhHhc-CChHHHHH
Confidence            99 999999999999887 68888889999999999999999999999888775  334578888888766 77888888


Q ss_pred             HHhhCC
Q 008102          280 IISYCP  285 (577)
Q Consensus       280 Ll~~~~  285 (577)
                      |+++++
T Consensus       159 L~~~gA  164 (165)
T 3twr_A          159 LRGDAA  164 (165)
T ss_dssp             HHTC--
T ss_pred             Hhhccc
Confidence            887654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=1.7e-25  Score=200.17  Aligned_cols=159  Identities=26%  Similarity=0.377  Sum_probs=107.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      ....+.++|+.|++.|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            34455677777777777777777777776664 56667777777777777777777777777777777777777777777


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE  279 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~  279 (577)
                      .. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++++.+++  ..+..|.||||+|+..|+.+++++
T Consensus        89 ~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           89 LF-GHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             Hc-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHHHHHHhCCHHHHHH
Confidence            77 777777777777666 56666666667666666666666666666665553  223356666666666666666666


Q ss_pred             HHhh
Q 008102          280 IISY  283 (577)
Q Consensus       280 Ll~~  283 (577)
                      |++.
T Consensus       165 L~~~  168 (169)
T 2y1l_E          165 LQKL  168 (169)
T ss_dssp             HHTC
T ss_pred             HHHc
Confidence            6554

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=6.4e-26  Score=202.08  Aligned_cols=161  Identities=25%  Similarity=0.271  Sum_probs=144.9

Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102           71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV  150 (577)
Q Consensus        71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  150 (577)
                      .|.+|.||||.|++.|+.++++.|++.+..               ..+..+..|.||||+|+..|+.+++++|++++.++
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   68 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV---------------NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV   68 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTT---------------TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCC---------------CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            467789999999999999999999985322               24557788999999999999999999999999887


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      + ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|.|||
T Consensus        69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l  145 (165)
T 3twr_A           69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGAD-PTKKNRDGNTPL  145 (165)
T ss_dssp             T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCTG
T ss_pred             C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CcccCCCCCChh
Confidence            5 6788899999999999999999999999999999999999999999999 999999999999888 789999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCC
Q 008102          231 HYASYFDRNIIAELLLNSDK  250 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~~  250 (577)
                      |+|+. |+.+++++|++.|+
T Consensus       146 ~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          146 DLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             GGSCT-TCHHHHHHHHTC--
T ss_pred             HhHhc-CChHHHHHHhhccc
Confidence            99777 99999999998874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=3.2e-25  Score=200.44  Aligned_cols=161  Identities=19%  Similarity=0.231  Sum_probs=133.5

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102          122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN  201 (577)
Q Consensus       122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  201 (577)
                      .++.++||.|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            35678999999999999999999987666667888899999999999999999999999999999999999999999998


Q ss_pred             CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHH
Q 008102          202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII  281 (577)
Q Consensus       202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  281 (577)
                       ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++++++.  ..+..|.|||++|+..++.+++++|+
T Consensus        83 -~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           83 -GHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             -TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHHHHHHHHHHHHHHHHH
Confidence             899999999998877 67788888888888888888888888888887764  33446778888887777777777777


Q ss_pred             hhCCc
Q 008102          282 SYCPE  286 (577)
Q Consensus       282 ~~~~~  286 (577)
                      +.+++
T Consensus       159 ~~g~~  163 (179)
T 3f6q_A          159 KMGQN  163 (179)
T ss_dssp             HTTCC
T ss_pred             HhhcC
Confidence            77776

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.2e-25  Score=194.90  Aligned_cols=151  Identities=24%  Similarity=0.312  Sum_probs=120.2

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      ..||||.|++.|+.+++++|++.+++..  .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-G   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-T
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-C
Confidence            3578999999999999999998887654  577788999999999999999999988888888888888888888888 8


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI  280 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  280 (577)
                      +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++  ..+..|.||||+|+..|+.+++++|
T Consensus        79 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           79 HANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888888776 57777778888888888777777777777776654  2333566777777777777776654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.9e-25  Score=195.79  Aligned_cols=154  Identities=23%  Similarity=0.261  Sum_probs=126.6

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      +.||||.|+..|+.+++++|++. ...              .++..|..|.||||+ +..|+.+++++|++.|.+++ ..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~--------------~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~   64 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELV--------------HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQ   64 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCC--------------CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCc--------------CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-Cc
Confidence            45888888888888888888886 210              145677888888888 88888888888888887765 67


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      |..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++. .+ ++..|..|.||||+|+
T Consensus        65 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~  141 (156)
T 1bd8_A           65 DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-SD-LHRRDARGLTPLELAL  141 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHH
Confidence            77888888888888888888888888888888888888888888888 888888888887 44 6778888888888888


Q ss_pred             hcCcHHHHHHHhcC
Q 008102          235 YFDRNIIAELLLNS  248 (577)
Q Consensus       235 ~~g~~~~v~~Ll~~  248 (577)
                      ..|+.+++++|+++
T Consensus       142 ~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHhh
Confidence            88888888888764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=7.2e-27  Score=221.71  Aligned_cols=217  Identities=16%  Similarity=0.143  Sum_probs=120.5

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV  200 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  200 (577)
                      +..|.||||.|++.|+.+.++.|+++|.++..  +..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+.
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34578888888888888888888888877652  3557788888888888888888888888888888888888888888


Q ss_pred             cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHh--hhcCcHHHHH
Q 008102          201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLA--AGQGKLRVVE  278 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~  278 (577)
                      . |+.+++++|++.+.+ ++..|..|+||||+|+..|+.+++++|++++++++. .+...+.||||+|  +..|+.++++
T Consensus        80 ~-g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           80 A-GHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA-MTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             H-TCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             c-CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcce-ecCCCCcchHHHHHHhhhccHHHHH
Confidence            8 788888888887766 577777777777777777777777777777666542 2221233666666  5555566666


Q ss_pred             HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      +|++.+++ .+..+.                            +......|..|.|+++++.+.|.   +..++...+.+
T Consensus       157 ~Ll~~~a~-~~~~~~----------------------------~~~~al~d~~~~~~~eLa~~~G~---~i~vl~~~~~~  204 (239)
T 1ycs_B          157 FLYGVQEK-MGIMNK----------------------------GVIYALWDYEPQNDDELPMKEGD---CMTIIHREDED  204 (239)
T ss_dssp             HHHHHHHH-TTTTGG----------------------------GEEEESSCBCCSSTTBCCBCSSC---EEEECCCCTTS
T ss_pred             HHHHhhhc-cccccc----------------------------ceEEEEeccCCCCCCcccccCCC---EEEEEEecCCC
Confidence            66655544 221111                            11122336778888888877763   33444444433


Q ss_pred             ------hhhhhhCCCChHHHHh
Q 008102          359 ------YQAVNKQNISVKHITR  374 (577)
Q Consensus       359 ------~~~~n~~G~t~l~~a~  374 (577)
                            ....++.|.+|..+..
T Consensus       205 ~~~Ww~~~~~~~~G~~P~~yv~  226 (239)
T 1ycs_B          205 EIEWWWARLNDKEGYVPRNLLG  226 (239)
T ss_dssp             CSSEEEEEETTEEEEEEGGGEE
T ss_pred             CCCEEEEEECCcEEEeehHHee
Confidence                  2456778888888775

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=2.8e-27  Score=237.80  Aligned_cols=253  Identities=11%  Similarity=-0.017  Sum_probs=192.2

Q ss_pred             CcHHHHHHH-hCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--c
Q 008102           76 DAPLHVAAK-CGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--Y  152 (577)
Q Consensus        76 ~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~  152 (577)
                      .+++++|.. .++.++++++++.                       +.+++||||+|++.|+.+++++|++++....  .
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~-----------------------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~  122 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKK-----------------------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK  122 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHH-----------------------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHc-----------------------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH
Confidence            356677666 4677788888765                       3345699999999999999999999986321  1


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCC---CCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCcccc--CCCCCC
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSV---AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGE--TDRYGW  227 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~--~d~~g~  227 (577)
                      ..+..|.||||+|+..|+.+++++|+++|+++   +..+.+ .||||.|+.. |+.+++++|++.+++ .+.  .|..|.
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~-G~~eiv~~Ll~~ga~-~~~~~~d~~g~  199 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN-GHLHVLNRLCELAPT-EATAMIQAENY  199 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT-TCHHHHHHHHHSCGG-GHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC-CCHHHHHHHHHcCCc-cchhccCCCCC
Confidence            34556889999999999999999999999762   222333 8999999999 999999999999887 444  778899


Q ss_pred             cHHHHHH-hcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcC
Q 008102          228 TPLHYAS-YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF  306 (577)
Q Consensus       228 tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  306 (577)
                      ||||+|+ ..|+.+++++|++.+.         .|.||||.|+.+|+.+++++|++++++ .+..|    ++++.|+.+|
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga---------~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g  265 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV---------MLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDG  265 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH---------HHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSS
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC---------ccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCC
Confidence            9999999 9999999999999653         267999999999999999999999877 33333    5889999999


Q ss_pred             ChhHH------------HHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          307 DASDL------------KHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       307 ~~~~v------------~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      +.+++            +.++.+    +         +.+.++.+.... .....+.+.+.|++++    .+.||+++|.
T Consensus       266 ~~~vv~~~~~~~~~~~~~~li~~----~---------~~~~~~~~~~Ll-~~~~vk~l~~~g~~~n----~~~~~L~~A~  327 (376)
T 2aja_A          266 VFDLVTKSECLQGFYMLRNLIRR----N---------DEVLLDDIRFLL-SIPGIKALAPTATIPG----DANELLRLAL  327 (376)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHH----C---------CGGGHHHHHHHH-TSTTTGGGSSCCSSTT----CCCHHHHHHH
T ss_pred             ChhhhcHHhhhhhHHHHHHHHHc----c---------hhhHHHHHHHHH-hChhhhhhhccCCCCC----CccHHHHHHH
Confidence            88854            334433    1         122333333322 1223455667787775    4558999999


Q ss_pred             -cCCcchHHHHHH
Q 008102          375 -YGFPQLEQEIRE  386 (577)
Q Consensus       375 -~~~~~~~~~l~~  386 (577)
                       .|+.++++.|.+
T Consensus       328 ~~g~~e~v~lLl~  340 (376)
T 2aja_A          328 RLGNQGACALLLS  340 (376)
T ss_dssp             HHTCTTHHHHHTT
T ss_pred             HcCcHHHHHHHHc
Confidence             899999998876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.4e-26  Score=219.77  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102          122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN  201 (577)
Q Consensus       122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  201 (577)
                      ..|.||||.|+..|+.++++.|++.+++++ ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            557788888888888888888888887664 6677888888888888888888888888888888888888888888888


Q ss_pred             CCCHHHHHHHHhhCCCccccCCCCCC-cHHHHH--HhcCcHHHHHHHhcCCCCcc
Q 008102          202 INSIDVVKLLLDKKKSLIGETDRYGW-TPLHYA--SYFDRNIIAELLLNSDKSLA  253 (577)
Q Consensus       202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~-tpL~~A--~~~g~~~~v~~Ll~~~~~~~  253 (577)
                       ++.+++++|++.+.+ ++..+..|. ||||+|  +..|+.+++++|++.+++..
T Consensus       114 -~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~  166 (239)
T 1ycs_B          114 -NNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG  166 (239)
T ss_dssp             -TCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT
T ss_pred             -CCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc
Confidence             888888888888877 566666555 888888  67788888888888877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=8.6e-25  Score=192.76  Aligned_cols=154  Identities=23%  Similarity=0.310  Sum_probs=113.3

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      +.||||.|+..|+.++++.|++..+......+..|.||||+ +..|+.+++++|+++|++++.++..|.||||.|+.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-G   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-T
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-C
Confidence            45788888888888888888887333344677778888888 888888888888888888888888888888888888 8


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      +.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++. .+++  ..+..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            88888888887766 567777777777777777777777777776 4443  2233566666666666666666666653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=7.4e-25  Score=197.99  Aligned_cols=167  Identities=18%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          157 CGETPLYMAAERGFEKMLTEILENC-PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      .+.+||+.|+..|+.+++++|++.+ .+++..+..|.||||.|+.. ++.+++++|++.+.+ ++..|..|.||||+|+.
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            3567777888888888887777773 56677777777777777777 777777777777766 56677777777777777


Q ss_pred             cCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHH
Q 008102          236 FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL  315 (577)
Q Consensus       236 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll  315 (577)
                      .|+.+++++|++.+.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+
T Consensus        82 ~~~~~~v~~Ll~~g~~~~--~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADIN--AVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            777777777777776664  2234667777777777777777777777766 5666777777777777777777777777


Q ss_pred             hccccccccccCCCCCC
Q 008102          316 NNYPIVRNLINDKDKEG  332 (577)
Q Consensus       316 ~~~~~~~~~~n~~d~~G  332 (577)
                      +.    |++++..+.++
T Consensus       159 ~~----g~~~~~~~~~~  171 (179)
T 3f6q_A          159 KM----GQNLNRIPYKD  171 (179)
T ss_dssp             HT----TCCCSCBCCCC
T ss_pred             Hh----hcCcccCCccc
Confidence            76    66666655544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=2.4e-23  Score=178.84  Aligned_cols=132  Identities=18%  Similarity=0.195  Sum_probs=95.9

Q ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 008102           66 SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK  145 (577)
Q Consensus        66 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~  145 (577)
                      ..++..+..|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+. |+.+++++|++
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~   65 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD----------------PNALNRFGRRPIQVMMM-GSAQVAELLLL   65 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC----------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC----------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHH
Confidence            34566777777777777777777777777776544                34566777777777777 77777777777


Q ss_pred             cCCCCCcCCCCC-CChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC
Q 008102          146 EDPAVPYSTNGC-GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK  216 (577)
Q Consensus       146 ~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~  216 (577)
                      ++.+++ .++.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++++.
T Consensus        66 ~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           66 HGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHAATG  135 (136)
T ss_dssp             HTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHHHHC
T ss_pred             CCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCC
Confidence            777665 45555 77777777777777777777777777777777777777777777 77777777777654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.2e-23  Score=185.38  Aligned_cols=145  Identities=17%  Similarity=0.066  Sum_probs=109.2

Q ss_pred             ccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCc-h
Q 008102          220 GETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWN-V  298 (577)
Q Consensus       220 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~  298 (577)
                      ...+..|.||||+|+..|+.+++++|++.+.+++  ..+..|.||||+|+ .|+.+++++|++++.+ ++.+|..|+| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN--APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT--CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence            4556778899999999999999999999887765  33447899999985 8999999999999888 7888999998 9


Q ss_pred             hhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHH
Q 008102          299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHIT  373 (577)
Q Consensus       299 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a  373 (577)
                      ||+|+..++.+++++|+++    |+++|.+|.+|+||||+|+..+ ...+.++|+++|++++.+|..|.||.+-+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~----ga~~~~~d~~g~tpl~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA----GARLDVRDAWGRLPVDLAEELG-HRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH----TCCSSCCCTTCCCHHHHHHHHT-CHHHHHHHSSCC-----------------
T ss_pred             HHHHHHCCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHhC-HHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999998    8999999999999999999998 56777888899999999999999987643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=4.3e-23  Score=181.85  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=86.5

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCC
Q 008102           70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPA  149 (577)
Q Consensus        70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  149 (577)
                      ..+..|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+ .|+.+++++|++++.+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~   69 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE   69 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC----------------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence            3456667777777777777777777766544                3456667777777764 6777777777777666


Q ss_pred             CCcCCCCCCCh-HHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          150 VPYSTNGCGET-PLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       150 ~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      ++ .++..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++.+.+ ++..+..|.|
T Consensus        70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t  146 (156)
T 1bi7_B           70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRAAAGG-TRGSNHARID  146 (156)
T ss_dssp             CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSSCC-------------
T ss_pred             CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CHHHHHHHHHHcCCC-CCccCcCcCc
Confidence            54 55666666 77777777777777777777777777777777777777777 777777777776666 5666666666


Q ss_pred             HHH
Q 008102          229 PLH  231 (577)
Q Consensus       229 pL~  231 (577)
                      |.+
T Consensus       147 ~~~  149 (156)
T 1bi7_B          147 AAE  149 (156)
T ss_dssp             ---
T ss_pred             ccc
Confidence            655

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=6.4e-23  Score=176.16  Aligned_cols=131  Identities=18%  Similarity=0.241  Sum_probs=118.4

Q ss_pred             hccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCC-CCCHH
Q 008102          117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS-GKTAL  195 (577)
Q Consensus       117 l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L  195 (577)
                      ++.+|..|.||||+|++.|+.+++++|++++.+++ .++..|.||||+|+. |+.+++++|+++|++++.++.. |.|||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            56788999999999999999999999999988775 678889999999999 9999999999999999999998 89999


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102          196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  251 (577)
                      |+|+.. ++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        83 ~~A~~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           83 HDAARE-GFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHH-TCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHc-CCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999 999999999998887 688888999999999999999999999887653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=7.6e-24  Score=191.81  Aligned_cols=158  Identities=13%  Similarity=0.067  Sum_probs=129.0

Q ss_pred             HHHHHHHHcCCcHHHHHhhhhcCCccccCCCCccceeeeecCCcc-chHHHHHHHHHHhhCccccccccCCCCcHHHHHH
Q 008102            5 PLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRE-TIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAA   83 (577)
Q Consensus         5 ~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~-~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~   83 (577)
                      ++|+.|++.|+.+.++.+++.+++...+..|.||||+|+.+|+.+ ..+++++|++    .+..++.+|..|.||||+|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHH
Confidence            568999999999999999998887766458999999999999811 1348888877    68899999999999999999


Q ss_pred             HhCC------HHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCC-cHhHHHHHcC-----CHHHHHHHHh-cCCCC
Q 008102           84 KCGH------ASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN-TALHEAMQHR-----SLDVVKILIK-EDPAV  150 (577)
Q Consensus        84 ~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~  150 (577)
                      ..|+      .+++++|++.|++                ++.+|..|. ||||+|+..+     +.+++++|++ +|+++
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gad----------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGAD----------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCC----------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCC----------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            9987      6889999998877                567889999 9999999854     3567788887 67766


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCC
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPS  183 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  183 (577)
                      + .+|..|.||||+|++.|+.+++++|.+...+
T Consensus       148 ~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          148 L-IKDKWGLTALEFVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             T-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             c-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4 6777788888888888888888877766543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=4.4e-23  Score=186.79  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=114.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCC-CCCCcHhHHHHHcCCH----HHHHHHHhcCCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-DEKNTALHEAMQHRSL----DVVKILIKEDPA  149 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~  149 (577)
                      +.++|+.|++.|+.+.++.+++.+.                  +..+ ..|.||||+|+..|+.    +++++|+++|++
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~------------------~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad   67 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY------------------EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD   67 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS------------------SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc------------------ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence            4567888888888888887776532                  1223 5678888888888864    478888888877


Q ss_pred             CCcCCCCCCChHHHHHHHhCC------HHHHHHHHHhCCCCCCCCCCCC-CHHHHHHHcC----CCHHHHHHHHh-hCCC
Q 008102          150 VPYSTNGCGETPLYMAAERGF------EKMLTEILENCPSVAHEGPSGK-TALHAAAVNI----NSIDVVKLLLD-KKKS  217 (577)
Q Consensus       150 ~~~~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~----~~~~~~~~Ll~-~~~~  217 (577)
                      ++ .+|..|.||||+|+..|+      .+++++|+++|++++.+|..|. ||||+|+..+    +..+++++|++ .+.+
T Consensus        68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad  146 (186)
T 3t8k_A           68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ  146 (186)
T ss_dssp             SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC
T ss_pred             CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC
Confidence            75 567778888888888776      5678888888888888888888 8888887741    23457777777 6666


Q ss_pred             ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       218 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                       ++.+|..|.||||+|++.|+.+++++|.+..
T Consensus       147 -~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          147 -LLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             -TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence             6777777778888777777777777777643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=5.4e-23  Score=195.44  Aligned_cols=171  Identities=16%  Similarity=0.121  Sum_probs=140.8

Q ss_pred             CCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccch
Q 008102           33 NNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST  112 (577)
Q Consensus        33 ~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~  112 (577)
                      ..+.+++.+++..|+   .+.+..+.       ......+.+|.||||+|++.|+.++++.|++ +.+            
T Consensus        13 ~~~~~~~l~~~~~g~---~~~~~~~~-------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------------   69 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGH---SPSWVPSS-------YIAADVVSEYETPWWTAARKADEQALSQLLE-DRD------------   69 (244)
T ss_dssp             TTTEEEEEEEESSCC---CCEEEEGG-------GSCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCC------------
T ss_pred             CCCccHHHHHHHcCC---Cccccccc-------ccccccccCCCCHHHHHHHcCCHHHHHHHHc-CCC------------
Confidence            367788899999998   44432221       1123345678999999999999999999998 544            


Q ss_pred             HHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC
Q 008102          113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK  192 (577)
Q Consensus       113 ~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~  192 (577)
                          ++.+|..|.||||+|+..|+.+++++|++++++++...+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus        70 ----~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~  145 (244)
T 3ui2_A           70 ----VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGL  145 (244)
T ss_dssp             ----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             ----CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence                4668899999999999999999999999999998755558899999999999999999999999999999999999


Q ss_pred             CHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       193 t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                      ||||+|+.. ++                  ...+.||||+|+..|+.+++++|++..
T Consensus       146 t~l~~A~~~-~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          146 TALELAREI-LK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             CHHHHHHHH-HT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-Hh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            999999865 21                  245778888888888888888888753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.7e-21  Score=164.67  Aligned_cols=125  Identities=36%  Similarity=0.561  Sum_probs=85.9

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      +|.||||.|++.|+.+++++|++.+.+                ++..|..|.||||+|+..|+.+++++|++.+.++. .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~   63 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A   63 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC----------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence            366777777777777777777776544                34456667777777777777777777777666654 4


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK  216 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~  216 (577)
                      ++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. ++.+++++|++++.
T Consensus        64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGA  125 (126)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTC
T ss_pred             cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CcHHHHHHHHHcCC
Confidence            566677777777777777777777777777766666777777777776 67777777766654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=7.6e-22  Score=169.43  Aligned_cols=122  Identities=25%  Similarity=0.318  Sum_probs=61.2

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      .+.||||.|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.+.+++ .
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~   75 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD----------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-A   75 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence            344555555555555555555554333                23344455555555555555555555555544443 3


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      .|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. ++.+++++|++
T Consensus        76 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~  134 (136)
T 2jab_A           76 VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN-GNEDLAEILQK  134 (136)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555 55555555444

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=2.3e-21  Score=163.76  Aligned_cols=126  Identities=34%  Similarity=0.505  Sum_probs=101.9

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102          123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI  202 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  202 (577)
                      +|.||||.|++.|+.+++++|++++.++. ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+.. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~-   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-
Confidence            47788888888888888888888877765 5677788888888888888888888888888888888888888888888 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  251 (577)
                      ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            888888888887776 577777788888888888888888888877653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.6e-21  Score=167.46  Aligned_cols=127  Identities=25%  Similarity=0.377  Sum_probs=110.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      ....+.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            45567899999999999999999999988775 67788999999999999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                      .. ++.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.|
T Consensus        89 ~~-~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FI-GHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             Hc-CCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99 899999999998877 6788888999999999999999999888764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=7.5e-22  Score=178.83  Aligned_cols=142  Identities=19%  Similarity=0.191  Sum_probs=125.0

Q ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC
Q 008102           71 VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV  150 (577)
Q Consensus        71 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  150 (577)
                      .+..|.||||+|+..|+.++++.|++ +.+                ++.+|..|.||||+|+..|+.+++++|+++++++
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~----------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  102 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD----------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL  102 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC----------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            45678999999999999999999998 544                4668899999999999999999999999999988


Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      +...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++                  ...+.+||
T Consensus       103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~------------------~~~~~~~l  163 (183)
T 3deo_A          103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-LK------------------TTPKGNPM  163 (183)
T ss_dssp             TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-HH------------------TCCCCSHH
T ss_pred             CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh-cc------------------CcccccHH
Confidence            755558899999999999999999999999999999999999999999876 21                  13467899


Q ss_pred             HHHHhcCcHHHHHHHhcC
Q 008102          231 HYASYFDRNIIAELLLNS  248 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~  248 (577)
                      ++|+..|+.+++++|.++
T Consensus       164 ~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          164 QFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCHHHHHHHHHHh
Confidence            999999999999998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=1.2e-21  Score=168.33  Aligned_cols=124  Identities=27%  Similarity=0.337  Sum_probs=57.4

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV  200 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  200 (577)
                      |.+|.||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            4444444444444444444444444444332 334444444444444444444444444444444444444444444444


Q ss_pred             cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhc
Q 008102          201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN  247 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  247 (577)
                      . ++.+++++|++.+.+ ++..|..|.||||+|+..+..+++++|.+
T Consensus        86 ~-~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           86 N-GHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             T-TCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             c-CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            4 444444444444444 34444444555554444444444444443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=5.5e-21  Score=173.07  Aligned_cols=140  Identities=24%  Similarity=0.263  Sum_probs=125.9

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALHAAA  199 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  199 (577)
                      +.+|.||||+|++.|+.++++.|++ +.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4568899999999999999999999 76665 688899999999999999999999999999999888 88999999999


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE  279 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~  279 (577)
                      .. ++.+++++|++.+.+ ++.+|..|.||||+|++.++.                   ..+.+||++|+..|..++++.
T Consensus       119 ~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          119 GY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HT-TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred             hc-CcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHH
Confidence            99 999999999999988 788999999999999875432                   256789999999999999999


Q ss_pred             HHhh
Q 008102          280 IISY  283 (577)
Q Consensus       280 Ll~~  283 (577)
                      |.++
T Consensus       178 L~~~  181 (183)
T 3deo_A          178 LEGQ  181 (183)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            8764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=4.1e-21  Score=165.05  Aligned_cols=130  Identities=25%  Similarity=0.194  Sum_probs=116.6

Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHH
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY  232 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  232 (577)
                      .+|..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKAL-VNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence            5788899999999999999999999999999999999999999999999 999999999999887 78899999999999


Q ss_pred             HHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCc
Q 008102          233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE  286 (577)
Q Consensus       233 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  286 (577)
                      |+..|+.+++++|++.+++++  ..+..|.||+|+|+..+..++++++.+....
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999999999999999998875  4455899999999999999999888776544

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=6.8e-21  Score=180.91  Aligned_cols=143  Identities=24%  Similarity=0.257  Sum_probs=125.1

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG-PSGKTALHAAA  199 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~  199 (577)
                      +.+|.||||+|++.|+.++++.|++ +.+++ .+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3568899999999999999999999 76665 688889999999999999999999999999999888 78999999999


Q ss_pred             HcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHH
Q 008102          200 VNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEE  279 (577)
Q Consensus       200 ~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~  279 (577)
                      .. ++.+++++|++.+.+ ++..|..|.||||+|+..++                   ...+.+|||+|+..|+.+++++
T Consensus       120 ~~-g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~-------------------~~~~~~~l~~a~~~g~~~iv~~  178 (244)
T 3ui2_A          120 GY-VRPEVVEALVELGAD-IEVEDERGLTALELAREILK-------------------TTPKGNPMQFGRRIGLEKVINV  178 (244)
T ss_dssp             HT-TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT-------------------TCCCSSHHHHHHHHHHHHHHHH
T ss_pred             Hc-CCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh-------------------ccCCCCHHHHHHHcChHHHHHH
Confidence            99 999999999999888 78899999999999986321                   1257789999998888888888


Q ss_pred             HHhhCCc
Q 008102          280 IISYCPE  286 (577)
Q Consensus       280 Ll~~~~~  286 (577)
                      |+++..+
T Consensus       179 L~~~~~~  185 (244)
T 3ui2_A          179 LEGQVFE  185 (244)
T ss_dssp             HHHHHEE
T ss_pred             HHHhccc
Confidence            8876544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=7.9e-20  Score=178.75  Aligned_cols=149  Identities=19%  Similarity=0.125  Sum_probs=119.8

Q ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHHHhcCC
Q 008102           72 NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKILIKEDP  148 (577)
Q Consensus        72 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~  148 (577)
                      .....++||.|+..|+.+.++.|++.+.+.+....          -...+..|.||||+|+..   |+.+++++|+++++
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~----------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga  217 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP----------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG  217 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE----------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCC----------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence            33455789999999999999999987766321100          001588899999999997   89999999999998


Q ss_pred             CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      +++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+.+       .|.|
T Consensus       218 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~ga~-------~g~t  288 (301)
T 2b0o_E          218 HLD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAG-------TFAF  288 (301)
T ss_dssp             CTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHHHHH-------TTSS
T ss_pred             CCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhcCC-------CCCC
Confidence            876 6788899999999999999999999999999999999999999999999 999999999998765       4789


Q ss_pred             HHHHHHhcCcH
Q 008102          229 PLHYASYFDRN  239 (577)
Q Consensus       229 pL~~A~~~g~~  239 (577)
                      |||+|+.+|+.
T Consensus       289 pLh~A~~~g~~  299 (301)
T 2b0o_E          289 PLHVDYSWVIS  299 (301)
T ss_dssp             CCC--------
T ss_pred             hhHHHHhcCCc
Confidence            99999887763

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=1.3e-20  Score=158.52  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102           73 AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY  152 (577)
Q Consensus        73 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  152 (577)
                      ..|.||||.|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++.+.+++ 
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-   67 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGED----------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-   67 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCC----------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC----------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            3445556666666666666655554433                23445555566666665555555655555555543 


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus        68 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            4455555555555555555555555555555555555555555555

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=3.6e-20  Score=181.18  Aligned_cols=138  Identities=24%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcC-----CCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYS-----TNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHA  197 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  197 (577)
                      ++|+.|+..|+.+.++.|++.+++++..     .+..|.||||+|+..   |+.+++++|+++|++++..|..|.||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            4566666666666666666666655432     455666666666665   56666666666666666666666666666


Q ss_pred             HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc
Q 008102          198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK  273 (577)
Q Consensus       198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  273 (577)
                      |+.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++        .|.||||+|+..|+
T Consensus       233 A~~~-g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          233 AALY-NQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHT-TCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC-------
T ss_pred             HHHc-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhHHHHhcCC
Confidence            6666 666666666666655 456666666666666666666666666665432        34566666665554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=4.5e-20  Score=155.29  Aligned_cols=115  Identities=23%  Similarity=0.203  Sum_probs=96.6

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHH
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAV  200 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~  200 (577)
                      +..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            4567889999999999999999999888765 677789999999999999999999999999988888899999999998


Q ss_pred             cCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCc
Q 008102          201 NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR  238 (577)
Q Consensus       201 ~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~  238 (577)
                      . ++.+++++|++.+.+ ++.+|..|.||||+|...+.
T Consensus        83 ~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           83 E-GHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             H-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHHH
T ss_pred             c-CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHHH
Confidence            8 889999999988877 67888888888888854433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.2e-20  Score=176.70  Aligned_cols=130  Identities=22%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             cccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc-CC
Q 008102           70 SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE-DP  148 (577)
Q Consensus        70 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~  148 (577)
                      ..+..|.||||+|+..|+.+++++|++.+.+                ++.+|..|.||||+|+..|+.+++++|++. +.
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~  131 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVG----------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI  131 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCC----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC
Confidence            3455677777777777777777777776544                355677777777777777777777777777 55


Q ss_pred             CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCC
Q 008102          149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS  217 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~  217 (577)
                      +++ ..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.. +..++++.|++.+..
T Consensus       132 ~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~-~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          132 ELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA-ACASLLKKKQGTDAV  198 (222)
T ss_dssp             CCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSH-HHHHHHC--------
T ss_pred             Ccc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcch-hHHHHHHHHhccchh
Confidence            543 5667777777777777777777777777777777777777777777776 777777777766554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.80  E-value=8.9e-20  Score=170.66  Aligned_cols=132  Identities=21%  Similarity=0.256  Sum_probs=114.1

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHh-CCCCCCCCCCCCCHHHH
Q 008102          119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPSVAHEGPSGKTALHA  197 (577)
Q Consensus       119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~  197 (577)
                      ..+..|.||||+|+..|+.++++.|++.+.+++ ..|..|.||||+|+..|+.+++++|++. |++++..+..|.||||+
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            356789999999999999999999999998875 6788899999999999999999999999 89999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCcc
Q 008102          198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLA  253 (577)
Q Consensus       198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  253 (577)
                      |+.. ++.+++++|++.+.+ ++.+|..|.||||+|+..++.++++.|++.++...
T Consensus       147 A~~~-~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          147 AAWK-GYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHH-TCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHHc-CCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            9999 999999999999888 78899999999999999999999999999877653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=4.2e-18  Score=164.53  Aligned_cols=233  Identities=18%  Similarity=0.180  Sum_probs=146.7

Q ss_pred             cHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCcccc--ccccCCCCcHHHHHHHhCCHHHHH
Q 008102           16 IEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLL--QSVNAKGDAPLHVAAKCGHASVVT   92 (577)
Q Consensus        16 ~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~iv~   92 (577)
                      .++++.|.+...+. ..+.....|=...+..|-.-+.+|...-..+ ...-..+  -..|..+.+.++.+...|+..+.+
T Consensus         5 ~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l-g~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~   83 (278)
T 1dcq_A            5 KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHREL-GVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   83 (278)
T ss_dssp             HHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH-CTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhc-CCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence            34566666654333 2221223443333344552334555444332 1111212  135677889999999999987766


Q ss_pred             HHHHHHHcCCc-hhhcccc-chHHHhh------ccCC-------CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc-----
Q 008102           93 ALIEIAKKQPK-ELESGVE-STARQML------GMTN-------DEKNTALHEAMQHRSLDVVKILIKEDPAVPY-----  152 (577)
Q Consensus        93 ~Ll~~~~~~~~-~~~~~~~-~~~~~~l------~~~~-------~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----  152 (577)
                      ++-........ ....... ......+      ....       ....++|+.|+..|+.+.++.+++.+.++..     
T Consensus        84 i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~  163 (278)
T 1dcq_A           84 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLA  163 (278)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCS
T ss_pred             HHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhcccc
Confidence            65432111100 0000000 0001111      1001       1123578888888888888888888877532     


Q ss_pred             CCCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          153 STNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|++.+.+ ++.+|..|.||
T Consensus       164 ~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gad-~~~~d~~g~tp  241 (278)
T 1dcq_A          164 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-DNAECLKLLLRGKAS-IEIANESGETP  241 (278)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-CCCccCCCCCH
Confidence            3367788888888888   788888888888888888888888888888888 888888888888877 67888888888


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCC
Q 008102          230 LHYASYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       230 L~~A~~~g~~~~v~~Ll~~~~~  251 (577)
                      ||+|+..|+.+++++|++.+++
T Consensus       242 L~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          242 LDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888887653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=3.7e-19  Score=172.01  Aligned_cols=124  Identities=21%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             cHHHHHHhcCcHHHHHHHhcCCCCccch----hcCCCCCcchhHhhhc---CcHHHHHHHHhhCCcccccccCCCCchhh
Q 008102          228 TPLHYASYFDRNIIAELLLNSDKSLAYI----VDNDRKMTALHLAAGQ---GKLRVVEEIISYCPECCELVDGRGWNVLH  300 (577)
Q Consensus       228 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  300 (577)
                      ++|+.|+..|+.+.++.+++.+.+....    ..+..|.||||+|+..   |+.+++++|++++++ ++.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence            4556666666666666666655553211    1123456666666665   566666666666665 5556666666666


Q ss_pred             HHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCccc
Q 008102          301 FAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGG  357 (577)
Q Consensus       301 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~  357 (577)
                      +|+..|+.+++++|+++    |+++|.+|.+|+||||+|+..+ ...+.++|+++|+
T Consensus       211 ~A~~~g~~~~v~~Ll~~----gad~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRG----KASIEIANESGETPLDIAKRLK-HEHCEELLTQALS  262 (278)
T ss_dssp             HHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHc----CCCCCCccCCCCCHHHHHHHcC-CHHHHHHHHHcCC
Confidence            66666666666666665    6666666666666666666665 3444455554443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=1.7e-18  Score=137.58  Aligned_cols=91  Identities=34%  Similarity=0.546  Sum_probs=55.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      |.||||+|+..|+.+++++|++.+++                ++.+|..|.||||+|+..|+.+++++|++++++++ .+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~   64 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGAD----------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AK   64 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC----------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC----------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cc
Confidence            55666666666666666666665443                34455666666666666666666666666665554 45


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCC
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCP  182 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  182 (577)
                      |..|.||||+|+..|+.+++++|+++|+
T Consensus        65 d~~g~t~l~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           65 DKNGRTPLHLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5556666666666666666666666554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2.3e-18  Score=172.19  Aligned_cols=125  Identities=23%  Similarity=0.252  Sum_probs=77.7

Q ss_pred             CCCCcHhHHHHHc-CCHHHHHHHHhcCCCCCcCCC--CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          122 DEKNTALHEAMQH-RSLDVVKILIKEDPAVPYSTN--GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       122 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      ..+.|+||.|+.. |+.++++.|+++|.+++. .+  ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3455666666666 666666666666665542 33  5566666666666666666666666666666666666666666


Q ss_pred             HHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCC
Q 008102          199 AVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSD  249 (577)
Q Consensus       199 ~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  249 (577)
                      +.. ++.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|++.+
T Consensus       276 ~~~-g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          276 TIL-GHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHc-CcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            666 666666666666655 4566666666666666666666666666543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.75  E-value=7.9e-18  Score=133.72  Aligned_cols=91  Identities=36%  Similarity=0.530  Sum_probs=63.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      |+||||+|+..|+.+++++|++.+.+++ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-G   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-T
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-C
Confidence            6677777777777777777777766654 5566677777777777777777777777777777777777777777776 6


Q ss_pred             CHHHHHHHHhhCC
Q 008102          204 SIDVVKLLLDKKK  216 (577)
Q Consensus       204 ~~~~~~~Ll~~~~  216 (577)
                      +.+++++|++.+.
T Consensus        80 ~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLEAGA   92 (93)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            7777777766553

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=9.1e-18  Score=167.85  Aligned_cols=148  Identities=17%  Similarity=0.138  Sum_probs=117.4

Q ss_pred             CCCCCChHHHHHHHh-CCHHHHHHHHHhCCCCCCCC--CCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          154 TNGCGETPLYMAAER-GFEKMLTEILENCPSVAHEG--PSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      .+..+.|+||.|+.. |+.++++.|+++|++++..+  ..|.||||+|+.. ++.+++++|++.+.+ ++..|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gad-vn~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGAN-VNQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence            444578999999999 99999999999999999888  8999999999999 999999999999988 789999999999


Q ss_pred             HHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcc--cccccCCCCchhhHHHhc
Q 008102          231 HYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC--CELVDGRGWNVLHFAMVS  305 (577)
Q Consensus       231 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~  305 (577)
                      |+|+..|+.+++++|++++++++  ..+..|.||||+|+..|+.+++++|+..+...  ....+..+.|+++.+...
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLG--ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999885  34558999999999999999999999876442  224566788999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=1.9e-18  Score=143.34  Aligned_cols=104  Identities=26%  Similarity=0.204  Sum_probs=74.7

Q ss_pred             CCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHH
Q 008102          260 RKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLL  339 (577)
Q Consensus       260 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A  339 (577)
                      .|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..++.+++++|+++    |++++.+|.+|+||||+|
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~----g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT----TCCTTCCCTTCCCTTHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc----CCCCcccCCCCCCHHHHH
Confidence            567777777777777777777777666 566677777777777777777777777776    777777777777777777


Q ss_pred             HHhCCccceeccccCcccchhhhhhCCCCh
Q 008102          340 AALCRDSFHRIVPWNVGGDYQAVNKQNISV  369 (577)
Q Consensus       340 ~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~  369 (577)
                      +..+ ...+.++|+++|+|+|.++..|.||
T Consensus        83 ~~~~-~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNG-HHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTT-CHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCC-CHHHHHHHHHcCCCCCcCCcccccc
Confidence            7776 4555666677777777777777776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.71  E-value=1.4e-17  Score=138.00  Aligned_cols=108  Identities=26%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          119 MTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       119 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      .+|.+|.||||+|+..|+.+++++|++++.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            356677777777777777777777777776654 5566677777777777777777777777777777777777777777


Q ss_pred             HHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          199 AVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       199 ~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      +.. ++.+++++|++.+.+ ++..+..|.+|
T Consensus        83 ~~~-~~~~~~~~Ll~~ga~-~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKN-GHHEIVKLLDAKGAD-VNARSWGSSHH  111 (115)
T ss_dssp             HTT-TCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred             HHC-CCHHHHHHHHHcCCC-CCcCCcccccc
Confidence            777 777777777777666 56666666655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=9e-16  Score=125.91  Aligned_cols=89  Identities=27%  Similarity=0.365  Sum_probs=40.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 008102          120 TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAA  199 (577)
Q Consensus       120 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~  199 (577)
                      .|.+|.||||+|+..|+.+++++|++.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34444444444444444444444444444332 33444444444444444444444444444444444444444444444


Q ss_pred             HcCCCHHHHHH
Q 008102          200 VNINSIDVVKL  210 (577)
Q Consensus       200 ~~~~~~~~~~~  210 (577)
                      .. ++.+++++
T Consensus        99 ~~-~~~~~~~~  108 (110)
T 2zgd_A           99 DN-GNEDLAEI  108 (110)
T ss_dssp             HH-TCHHHHHH
T ss_pred             Hc-CCHHHHHH
Confidence            44 44444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.61  E-value=2.2e-15  Score=123.56  Aligned_cols=93  Identities=28%  Similarity=0.345  Sum_probs=84.9

Q ss_pred             CcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHH
Q 008102          151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPL  230 (577)
Q Consensus       151 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL  230 (577)
                      ....+.+|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+.. ++.+++++|++.+.+ ++..|..|.|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~-~~~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGAD-VXAQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence            345678899999999999999999999999999999999999999999999 999999999999887 788999999999


Q ss_pred             HHHHhcCcHHHHHHH
Q 008102          231 HYASYFDRNIIAELL  245 (577)
Q Consensus       231 ~~A~~~g~~~~v~~L  245 (577)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	577
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-16
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-13
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 5e-25
 Identities = 75/295 (25%), Positives = 118/295 (40%), Gaps = 27/295 (9%)

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
           PLHVA+  GH  +V  L          L+ G            N +  T LH A +    
Sbjct: 3   PLHVASFMGHLPIVKNL----------LQRGASPNVS------NVKVETPLHMAARAGHT 46

Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
           +V K L++   A   +     +TPL+ AA  G   M+  +LEN  +      +G T LH 
Sbjct: 47  EVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 105

Query: 198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVD 257
           AA   +   V+   L +K++      + G+TPLH A+ + +  +AELLL  D        
Sbjct: 106 AAREGHVETVLA--LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-- 161

Query: 258 NDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN 317
               +T LH+A     L +V+ ++             G+  LH A         + LL  
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 318 YPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHI 372
                   N +  +G TPLH LAA    +    +  +   +    NK  ++  H+
Sbjct: 221 GGS----ANAESVQGVTPLH-LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 270

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-24
 Identities = 78/315 (24%), Positives = 125/315 (39%), Gaps = 63/315 (20%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           L +  +LLQ   S N      + PLH+AA+ GH  V   L          L++  +  A+
Sbjct: 13  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----------LQNKAKVNAK 62

Query: 115 QMLGMTNDEKNTALHEAMQHRSLDVVKILIK----------------------------- 145
                   +  T LH A +    ++VK+L++                             
Sbjct: 63  ------AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 146 ---EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI 202
              E  A        G TPL++AA+ G  ++   +LE        G +G T LH A  + 
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH- 175

Query: 203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKM 262
           N++D+VKLLL +  S        G+TPLH A+  ++  +A  LL    S     ++ + +
Sbjct: 176 NNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS--ANAESVQGV 232

Query: 263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVR 322
           T LHLAA +G   +V  ++        L +  G   LH             L+ +  +V 
Sbjct: 233 TPLHLAAQEGHAEMVALLL-SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV- 290

Query: 323 NLINDKDKEGNTPLH 337
              +   + G TPLH
Sbjct: 291 ---DATTRMGYTPLH 302

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-24
 Identities = 77/334 (23%), Positives = 120/334 (35%), Gaps = 32/334 (9%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPS 66
           L+ AA  G     K +                                      L    +
Sbjct: 70  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV------ETVLALLEKEA 123

Query: 67  LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
               +  KG  PLHVAAK G   V   L          LE      A            T
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELL----------LERDAHPNAA------GKNGLT 167

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAH 186
            LH A+ H +LD+VK+L+      P+S    G TPL++AA++   ++   +L+   S   
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 226

Query: 187 EGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
           E   G T LH AA      ++V LL   K++     ++ G TPLH  +      +A++L+
Sbjct: 227 ESVQGVTPLHLAAQE-GHAEMVALL-LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 247 NSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF 306
                +          T LH+A+  G +++V+  +             G++ LH A    
Sbjct: 285 KHGVMVDATTRMGY--TPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQG 341

Query: 307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
               +  LL N        N+   +G TPL +  
Sbjct: 342 HTDIVTLLLKN----GASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 4e-20
 Identities = 61/258 (23%), Positives = 97/258 (37%), Gaps = 29/258 (11%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCP 65
           L+ A     ++  K +    G       N  T LH+       E         + L    
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA-------RSLLQYG 221

Query: 66  SLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKN 125
               + + +G  PLH+AA+ GHA +V  L+                  +    + N    
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEMVALLLSK----------------QANGNLGNKSGL 265

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
           T LH   Q   + V  +LIK    +  +T   G TPL++A+  G  K++  +L++   V 
Sbjct: 266 TPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
            +   G + LH AA      D+V LLL    S   E    G TPL  A       + ++L
Sbjct: 325 AKTKLGYSPLHQAAQQ-GHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 382

Query: 246 --LNSDKSLAYIVDNDRK 261
             +  + S   + D  R 
Sbjct: 383 KVVTDETSFVLVSDKHRM 400

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 4e-19
 Identities = 61/285 (21%), Positives = 99/285 (34%), Gaps = 36/285 (12%)

Query: 53  STEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112
                E +LE       +    G  PLHVA    +  +V  L+            G    
Sbjct: 144 KVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLP----------RGGSPH 192

Query: 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEK 172
           +            T LH A +   ++V + L+ +      + +  G TPL++AA+ G  +
Sbjct: 193 SP------AWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESVQGVTPLHLAAQEGHAE 245

Query: 173 MLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY 232
           M+  +L    +      SG T LH  A     + V  +L+ K   ++  T R G+TPLH 
Sbjct: 246 MVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLI-KHGVMVDATTRMGYTPLHV 303

Query: 233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVD 292
                   I  +                  + LH AA QG   +V  ++         V 
Sbjct: 304 --ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVS 360

Query: 293 GRGWNVLHFA-------MVSFDASDLKHLLNNYPIVRNLINDKDK 330
             G   L  A       +       LK + +    V  L++DK +
Sbjct: 361 SDGTTPLAIAKRLGYISVTDV----LKVVTDETSFV--LVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIV 321
           +T LH+A+  G L +V+ ++        + + +    LH A  +      K+LL N    
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQN---- 55

Query: 322 RNLINDKDKEGNTPLHLLAALCRDSFHRI 350
           +  +N K K+  TPLH  A +   +  ++
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKL 84

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.9 bits (227), Expect = 3e-21
 Identities = 55/278 (19%), Positives = 89/278 (32%), Gaps = 31/278 (11%)

Query: 74  KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
           + +  L  A +     +V  L          LE G     +       +   T LH A+Q
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQL----------LEGGANVNFQ-----EEEGGWTPLHNAVQ 48

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT 193
               D+V++L++                  +AA  G  K+L   L     V      G T
Sbjct: 49  MSREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

Query: 194 ALHAAAVNINSIDVVKLL--------LDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
           A   AAV      +  L           K K       + G T L  A+      + ++L
Sbjct: 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

Query: 246 LNSDKSLAYIVDNDRKMTALHLAAGQGK---LRVVEEIISYCPECCELVDGRGWNVLHFA 302
           L+   +     DN  +   +H            +   ++ +  +   +   RG   L  A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILA 226

Query: 303 MVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
           +       ++ LL    I    IND D +G T L L  
Sbjct: 227 VEKKHLGLVQRLLEQEHI---EINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 7e-19
 Identities = 53/278 (19%), Positives = 93/278 (33%), Gaps = 38/278 (13%)

Query: 36  NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALI 95
           N +L   + + D       + V+Q+LE   ++       G  PLH A +     +V  L+
Sbjct: 6   NHLLIKAVQNED------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 96  E-----------------IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLD 138
                             +A          +  +    +   +    TA  EA  +  + 
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 139 VVKILIKEDPAVPYSTNGC---------GETPLYMAAERGFEKMLTEILENCP----SVA 185
            +K L K    V                G T L  AAE+G  ++L  +L+       +  
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
           + G +       ++ + +   +  LLLD     +      G TPL  A       + + L
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 246 LNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           L  +       D+D K TAL LA      ++ E +   
Sbjct: 239 LEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 6e-12
 Identities = 44/199 (22%), Positives = 67/199 (33%), Gaps = 10/199 (5%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  A  N   +D+V+ LL+   ++  + +  GWTPLH A    R  I ELLL    
Sbjct: 5   DNHLLIKAVQN-EDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310
                  N        LAA  G +++++  +S   +  E  D  G+     A V      
Sbjct: 64  DPVLRKKNGATPF--LLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKA 120

Query: 311 LKHLLNNYP------IVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK 364
           LK L             +       K G T L   A        +I+   +G D  A + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 365 QNISVKHITRYGFPQLEQE 383
              +            + E
Sbjct: 181 MGRNALIHALLSSDDSDVE 199

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 86.1 bits (212), Expect = 6e-19
 Identities = 54/346 (15%), Positives = 91/346 (26%), Gaps = 44/346 (12%)

Query: 3   MDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILE 62
            DP L           F+   +     +   +    +H+ +        V          
Sbjct: 12  NDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAH 71

Query: 63  MCPSLLQSV------NAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQM 116
              +  Q          K +    VAA  G +S +  L  +       L S         
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL-------LTSDEI------ 118

Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST-NGCGETPLYMAAERGFEKMLT 175
           + +   E   A   A ++  L V+  L +  P    +           +AAE G   +L 
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLN 178

Query: 176 EILENCPSVA--HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233
            + E  P+ A          A   AAV     +V+  LLD    L             + 
Sbjct: 179 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHE 230

Query: 234 SYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDG 293
             +    +   +      L  +        A  L+   G   +V +          L   
Sbjct: 231 FEYGEKYVNPFIARHVNRLKEMH------DAFKLSNPDGVFDLVTKSEC-------LQGF 277

Query: 294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNL-INDKDKEGNTPLHL 338
                L          D++ LL+   I           + N  L L
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 323

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.6 bits (195), Expect = 1e-16
 Identities = 38/249 (15%), Positives = 66/249 (26%), Gaps = 39/249 (15%)

Query: 60  ILEMCPSLLQ------SVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTA 113
            L+    LL        + A+      +AA+ GH  V+  L E+A               
Sbjct: 105 ALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA--------------P 150

Query: 114 RQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLYMAAERGFE 171
            +++ M   E   A   A ++  L V+  L +     A             + A  RG  
Sbjct: 151 TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 210

Query: 172 KMLTEILENCPSVAHEGPSGKTALHAAAVNI------NSIDVVKLL--------LDKKKS 217
            ++  +L+    +A+                         ++             D    
Sbjct: 211 NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 270

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLN--SDKSLAYIVDNDRK-MTALHLAAGQGKL 274
                  Y    L   +          LL+    K+LA            L LA   G  
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 275 RVVEEIISY 283
                ++S 
Sbjct: 331 GACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 4e-14
 Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 29/282 (10%)

Query: 119 MTNDEKN-TALHEAMQHRSLDVVKILIKEDPAV----------PYSTNGCGETPLYMAAE 167
           MT   K    +          V ++L                  +      E   ++AA 
Sbjct: 40  MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 99

Query: 168 RGFE---KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKK-KSLIGETD 223
            G       L  +L +   V         A   AA N   + V+  L +     ++    
Sbjct: 100 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ 158

Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLA-YIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
              +     A+      +   L     + A  ++  +        A G+G   V+  ++ 
Sbjct: 159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

Query: 283 YCPECCELVDGRGWNVLHFAMVSF---------DASDLKHLLNNYPIVRNLINDKDKEGN 333
            CP      +   +      +  F         +  D   L N   +   +   +  +G 
Sbjct: 219 -CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 277

Query: 334 TPLHLLAALCRDSFHRIVPW--NVGGDYQAVNKQNISVKHIT 373
             L  L     +     + +  ++ G         I      
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 319

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.0 bits (165), Expect = 6e-13
 Identities = 36/270 (13%), Positives = 72/270 (26%), Gaps = 40/270 (14%)

Query: 6   LLYEAAAKGEIEPFKEISNVLGRV----VTHNNKNTILHVNIISRDRETIVSTEFVEQIL 61
           + + AA  G       +  +L       V          +   +           + ++ 
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH------LHVLNRLC 146

Query: 62  EMCPSL-LQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR------ 114
           E+ P+  +  + A+      +AA+ GH  V+  L E+A  +   +       A       
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 206

Query: 115 -------QMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAE 167
                    L         A     ++    V   + +       +          ++  
Sbjct: 207 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH-----VNRLKEMHDAFKLSNP 261

Query: 168 RGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLL----DKKKSLIGETD 223
            G   ++T+      S   +G      L         +D ++ LL     K  +      
Sbjct: 262 DGVFDLVTK------SECLQGFYMLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPTATIP 314

Query: 224 RYGWTPLHYASYFDRNIIAELLLNSDKSLA 253
                 L  A          LLL+    LA
Sbjct: 315 GDANELLRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 20/233 (8%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEI--- 177
           N E +  L         ++ +  I  +     + +      +++   +  E++   +   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 178 --------LENCPSVAHEGPSGKTALHAAAVN--INSIDVVKLLLDKKKSLIGETDRYGW 227
                    +       +G   +     AA+    +++D + LLL     ++       +
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENY 127

Query: 228 TPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPEC 287
                A+      +   L     +    +       A  LAA  G L V+  +    P  
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 288 --CELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
               +     +     A+     + +  LL+   ++       +         
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML----AYAEIHEFEYGEK 236

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 2e-18
 Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 9/214 (4%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
           N  +        L+ +K  I  D ++   T+    T L+ A   G  +++  +L+    V
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
             +  +G + LH         D +   L  K + +   ++ G TPLHYA+  +R+ IA +
Sbjct: 64  NDKDDAGWSPLH--IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 245 LLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304
           LL    +      +  + TA+H AA +G L+++  ++ Y        D  G   LH A  
Sbjct: 122 LLEGGANPD--AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI-QDTEGNTPLHLACD 178

Query: 305 SFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                + K L++        I  ++KE  TPL +
Sbjct: 179 EERVEEAKLLVSQ----GASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 2e-16
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 55  EFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTAR 114
           E +++ +    SL    +      LH A   GH  +V  L+++      + ++G      
Sbjct: 17  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI 76

Query: 115 Q-----------------MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGC 157
                              +   N    T LH A      ++  +L++   A P + +  
Sbjct: 77  AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHY 135

Query: 158 GETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKS 217
             T ++ AA +G  KM+  +L    S   +   G T LH A      ++  KLL+ +  S
Sbjct: 136 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-ERVEEAKLLVSQGAS 194

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELL 245
            I   ++   TPL  A      I+  ++
Sbjct: 195 -IYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 8e-11
 Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 47/240 (19%)

Query: 2   VMDPLLYEAAAKGEIEPFKEISNVLGRVVTHNNKN--TILHV------------------ 41
           V + ++   A  G++E  KE       + T  +++  T LH                   
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 61

Query: 42  --------NIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTA 93
                                + + + L    + + +VN  G  PLH AA      +   
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 94  LIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS 153
           L          LE G    A+      +  + TA+H A    +L ++ IL+    +    
Sbjct: 122 L----------LEGGANPDAK------DHYEATAMHRAAAKGNLKMIHILLYYKAST-NI 164

Query: 154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
            +  G TPL++A +    +    ++    S+  E    KT L  A   +    ++K +++
Sbjct: 165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG--LILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-10
 Identities = 31/186 (16%), Positives = 53/186 (28%), Gaps = 8/186 (4%)

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY 254
           +   A +   ++ +K  +   KSL   TD+   T LH+A       I E LL     +  
Sbjct: 7   VCNLAYS-GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 255 IVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL 314
             D       +           + + +         V+  G   LH+A           L
Sbjct: 66  KDDAGWSPLHIA---ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 315 LNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR 374
           L          + KD    T +H  AA        I+ +          + N  +     
Sbjct: 123 LEGGANP----DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 375 YGFPQL 380
               + 
Sbjct: 179 EERVEE 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.3 bits (194), Expect = 7e-17
 Identities = 30/202 (14%), Positives = 70/202 (34%), Gaps = 5/202 (2%)

Query: 71  VNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHE 130
           V+  G+ PLH      +  +V  L++         ++  ES   + +   N+  +     
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

Query: 131 AMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS 190
            + +    ++         + +     G T    AA+   + ++  I++        G +
Sbjct: 162 LLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 221

Query: 191 GKTALHAAAVNINSIDVVKLLLDKK--KSLIGETDRYGWTPLHYASYFDRNIIAELLLNS 248
            K +            +++ L  K    +++   D  G T L+ A+      I + LL+ 
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY 281

Query: 249 DKSLAYIVDNDRKMTALHLAAG 270
                +I +    +  +   AG
Sbjct: 282 GADP-FIANKS-GLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.6 bits (174), Expect = 2e-14
 Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 18/197 (9%)

Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
           +  NT LH      +L++VK L+K   +     +  GE+ L  A +              
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 163

Query: 182 PSVAHEG----PSGKTALHAAAVNINSIDV-----------VKLLLDKKKSLIGETDRYG 226
             +           +T LH   +                  +  ++ K+   I       
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 227 WTPLHYASYFDRNIIAELLLNSDKSLAYI-VDNDRKMTALHLAAGQGKLRVVEEIISYCP 285
            +  +  +   ++ I E L         +   +    T L++AA  G + +V+ ++ Y  
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 286 ECCELVDGRGWNVLHFA 302
           +   + +  G   + F 
Sbjct: 284 D-PFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 36/267 (13%), Positives = 82/267 (30%), Gaps = 31/267 (11%)

Query: 92  TALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP 151
             L  +   + +E+ + + + +               H +      +V          + 
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 152 YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSID--VVK 209
              +  G TPL+        +++  ++++  +  +    G++ L  A  ++N+ D    +
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 210 LLLDKKKSLIGETDRYGWTPLHYA----SYFDRNIIAEL-------LLNSDKSLAYIVDN 258
            LLD     +   D    T LH+          +  A+         +   ++       
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 259 DRKMTALHLAAGQGKLRVVEEIIS--YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLN 316
           + K +  +   G+ K  ++E +             D  G   L+ A              
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL----------G 270

Query: 317 NYPIVRNLI------NDKDKEGNTPLH 337
           N  IV  L+         +K G  P+ 
Sbjct: 271 NISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 32/229 (13%), Positives = 65/229 (28%), Gaps = 48/229 (20%)

Query: 159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL 218
           E  L        ++M T +  +  +   EG S        + +    +V     + + +L
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 219 IGETDRYGWTPLHYASYFDRNIIAELLLNSD----------------------------- 249
               D +G TPLH+ +      + + L+                                
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 250 ----KSLAYIVD--NDRKMTALHLAAGQGKLRVVEEIISYCPECC------------ELV 291
                 L   +   +    T LH       +        Y  +              +  
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 219

Query: 292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
                +  +        S L++L   + I  N++N +D  G+T L++ A
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWII-ANMLNAQDSNGDTCLNIAA 267

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (189), Expect = 1e-16
 Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 10/231 (4%)

Query: 117 LGMTNDEKNTALHEAMQHRSLDVVKILIKE--DPAVPYSTNGCGETPLYMAAERGFEKML 174
            G   ++ +TALH A+ H+    +  L+            N  G+T L++AA  G    +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 175 TEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
            ++      V      G TALH A     +     +LL  + S   +      T     +
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 235 YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCE-LVDG 293
               +  A +    +        ++     L      G   +   +I    E    L D 
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 294 RGWNVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
                            L        ++  L+        +   G TPL  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 3e-11
 Identities = 47/258 (18%), Positives = 81/258 (31%), Gaps = 47/258 (18%)

Query: 25  VLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMC--PSLLQSVNAKGDAPLHVA 82
           V G V    + +T LH+ +I +         F++ +L        L   N  G   LH+A
Sbjct: 1   VFGYV--TEDGDTALHLAVIHQH------EPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

Query: 83  AKCGHA---------------------------------SVVTALIEIAKKQPKELESGV 109
           A  G A                                 +    L++     P++     
Sbjct: 53  AILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRD---AS 109

Query: 110 ESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERG 169
           ++   Q    T D  +       Q    +  +   ++      + N  G TPL++A    
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK 169

Query: 170 FEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP 229
             +M+  + +    +    P+        AV   +  V++LLL             G TP
Sbjct: 170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTP 228

Query: 230 LHYASYFDRNIIAELLLN 247
           L  A      I+A LL  
Sbjct: 229 LGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 53/281 (18%), Positives = 88/281 (31%), Gaps = 41/281 (14%)

Query: 67  LLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNT 126
           +   V   GD  LH+A    H   +  L+               S   + L + ND   T
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLG-------------FSAGHEYLDLQNDLGQT 47

Query: 127 ALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV-- 184
           ALH A        V+  +    A        G T L++A           +L+  PS   
Sbjct: 48  ALHLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

Query: 185 --------AHEGPSGKTALHAAAVN--INSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS 234
                     +  +  T+   AAV+   N  +  +   +  +  +   +  G TPLH A 
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

Query: 235 YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR 294
                 +   LL    +     +     T LHLA       V+E ++    +        
Sbjct: 167 IHKDAEMVR-LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYG 224

Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN---DKDKEG 332
           G   L  A++            N  + R L      + ++G
Sbjct: 225 GRTPLGSALLR----------PNPILARLLRAHGAPEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 8e-10
 Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 8/156 (5%)

Query: 218 LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI-VDNDRKMTALHLAAGQGKLRV 276
           + G     G T LH A         + LL       Y+ + ND   TALHLAA  G+   
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 277 VEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIND------KDK 330
           VE++ +         +  G   LH A      +    LL   P      +D      +D 
Sbjct: 61  VEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 331 EGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQN 366
             +T     A   + +               +  +N
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.0 bits (185), Expect = 3e-16
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 4/215 (1%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILEN-CPS 183
           N  LH+A        V+ L+   P++    +  G  PL+ +      ++ + +L      
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 184 VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE 243
              + P                  V   L  +                      +     
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 244 LLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAM 303
                +   +  + +      LH AA  G L+++E +           D +GW  L  A+
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 304 VSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                     L+  Y       +  D +G     +
Sbjct: 181 AEGHGDAAVLLVEKYGA---EYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 3e-13
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 34/235 (14%)

Query: 36  NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALI 95
           N  LH   +  +         V+++L   PSLL   +  G  PLH +       + + L+
Sbjct: 1   NYPLHQACMENE------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL 54

Query: 96  E----------------------IAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
                                   +    + ++S  +   +  L    ++  T LH A+ 
Sbjct: 55  SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 114

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEK-MLTEILENCPSVAHEGPSGK 192
            +  +V + LI+         +   + PL+ AA  G  K +         +V  +   G 
Sbjct: 115 KKWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 173

Query: 193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
           T L  A    +  D   LL++K  +     D  G      A       + +  LN
Sbjct: 174 TPLFHALAEGH-GDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 4/119 (3%)

Query: 299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD 358
           LH A +  +   ++ LL++ P   +L+  KD++G  PLH  +   +         +   +
Sbjct: 4   LHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLH-WSVSFQAHEITSFLLSKMEN 59

Query: 359 YQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMRENKIVKRTSHWKF 417
               +  + S              E+ +             + +     +        F
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 118

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.0 bits (159), Expect = 5e-13
 Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 21/211 (9%)

Query: 53  STEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112
           + + +  +L     L  +++  G+  LH+AA+   A     L++       +  +G    
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 113 ARQML------------------GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST 154
              +                        +  T L  A +     +V+ LI  D  +  + 
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAA 119

Query: 155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDK 214
           +  G+T L+ AA     + +  +L +  +   +    +T L   A    S +  K LLD 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF-LAAREGSYEASKALLDN 178

Query: 215 KKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
             +    TD     P   AS    + I  LL
Sbjct: 179 FAN-REITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.1 bits (123), Expect = 3e-08
 Identities = 29/134 (21%), Positives = 44/134 (32%), Gaps = 6/134 (4%)

Query: 204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMT 263
           +  V+  LL +   L    D+ G T LH A+ F R   A+ LL++        +  R   
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 264 ALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRN 323
              +AA    +  +                 G   L  A        ++ L+        
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNAR--MHDGTTPLILAARLAIEGMVEDLITADA---- 114

Query: 324 LINDKDKEGNTPLH 337
            IN  D  G T LH
Sbjct: 115 DINAADNSGKTALH 128

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.7 bits (122), Expect = 4e-08
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 8/203 (3%)

Query: 136 SLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL 195
           +  V+  L+ +   +  + +  GET L++AA         + L +  + A+   +     
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAA-KRLLDAGADANSQDNTGRTP 59

Query: 196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYI 255
             AAV  +++ V ++LL  + + +      G TPL  A+      + E L+ +D  +   
Sbjct: 60  LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 256 VDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLL 315
             ++   TALH AA       V  ++       +  D +    L  A         K LL
Sbjct: 120 --DNSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALL 176

Query: 316 NNYPIVRNLINDKDKEGNTPLHL 338
           +N+          D     P  +
Sbjct: 177 DNFAN----REITDHMDRLPRDV 195

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.1 bits (162), Expect = 6e-13
 Identities = 58/281 (20%), Positives = 88/281 (31%), Gaps = 36/281 (12%)

Query: 37  TILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAK----GDAPLHVAAKCGHASVVT 92
           + + ++  +     I      E I        +SVN          LH  A    A    
Sbjct: 2   SPIKLHTEAAGSYAIT-----EPITR------ESVNIIDPRHNRTVLHWIASNSSAEKSE 50

Query: 93  ALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY 152
            LI    K  + + +G +      +   + ++NT L  A+  R   +V  L+K       
Sbjct: 51  DLIVHEAK--ECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI 102

Query: 153 STNGCGETPLYMAAERGFE--KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKL 210
                       AA R F     +    +    +     +G TAL   A N     V   
Sbjct: 103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA 162

Query: 211 LLDKKKS---------LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRK 261
            L  +K                  G T LHYA+      I + L+    S     D D  
Sbjct: 163 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED-G 221

Query: 262 MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
            T + LAA +G++ VV  +I       E VD         A
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 41/279 (14%)

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
            LH  A  G  ++   +   +                           T LH    + S 
Sbjct: 5   KLHTEAA-GSYAITEPITRESVNIID-----------------PRHNRTVLHWIASNSSA 46

Query: 138 DVVKILIKEDP-------AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPS 190
           +  + LI  +        A   + +    TPL +A      +++  +     +       
Sbjct: 47  EKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL-MKAGADPTIYNK 105

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA-----------SYFDRN 239
            + +    A       ++  +L+  K      +                     +     
Sbjct: 106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 165

Query: 240 IIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVL 299
           +     ++ D +     +  +  TALH AA    + +V+ ++       +  D  G   +
Sbjct: 166 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 225

Query: 300 HFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
             A        + +L+         +   D   +T   L
Sbjct: 226 MLAAQEGRIEVVMYLIQQ----GASVEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 42/277 (15%), Positives = 83/277 (29%), Gaps = 40/277 (14%)

Query: 5   PLLYEAAAKGEIEPFKEISNVLGRVVTHNNKNTILH------------------------ 40
           P+     A G     + I+     ++   +  T+LH                        
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 41  ----VNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAP------LHVAAKCGHASV 90
               VN +  D  T +    + +   +   L+++              LH AA      +
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGM 122

Query: 91  VTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV 150
           +  ++   K +    E         M+   N+ ++      +       V          
Sbjct: 123 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK-- 180

Query: 151 PYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA-HEGPSGKTALHAAAVNINSIDVVK 209
             S    G T L+ AA+     ++  ++    S    +   GKT +  AA     I+VV 
Sbjct: 181 -DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-GRIEVVM 238

Query: 210 LLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
            L+ +  S +   D    T    A   + + I ++  
Sbjct: 239 YLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 55/233 (23%)

Query: 159 ETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL 218
           E+P+ +  E      +TE +        +    +T LH  A N +S +  + L+  +   
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASN-SSAEKSEDLIVHEAKE 59

Query: 219 -------IGETDRYGWTPLHYASYF----------------------------------D 237
                  +   D    TPL  A                                     D
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 119

Query: 238 RNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECC--------- 288
             ++  +L ++         +   MTAL + A       V        +           
Sbjct: 120 FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 179

Query: 289 -ELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA 340
            +    +G   LH+A    +   +K+L+      ++    +D++G TP+ L A
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD---KQDEDGKTPIMLAA 229

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 53  STEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVEST 112
           +   V+ ++    S     +  G  P+ +AA+ G   VV  LI+           G    
Sbjct: 199 NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ----------QGASVE 248

Query: 113 ARQMLGMTNDEKNTALHEAMQHRSLDVVKILIK 145
           A       +   +TA   A  +   ++V I  +
Sbjct: 249 AV------DATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 9e-07
 Identities = 25/200 (12%), Positives = 48/200 (24%), Gaps = 34/200 (17%)

Query: 228 TPLH-YASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE 286
           +P+  +        I E +         I+D     T LH  A        E++I +  +
Sbjct: 2   SPIKLHTEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 287 CCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDS 346
            C      G +V                           N  D + NTPL L     R  
Sbjct: 59  EC---IAAGADV---------------------------NAMDCDENTPLMLAVLARRRR 88

Query: 347 FHRIVPWNVGGDYQAVNKQNISVKHITRYGFPQLEQEIRELSKYIGSGQYPEGVVSMREN 406
               +             +  ++          +   +   +K  G  +  +        
Sbjct: 89  LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 148

Query: 407 KIVKRTSHWKFIDENYIGMK 426
            +       +      +  K
Sbjct: 149 IVAHNEGRDQVASAKLLVEK 168

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 26/195 (13%), Positives = 60/195 (30%), Gaps = 10/195 (5%)

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN--SD 249
           ++ +        S  + + +   ++S+     R+  T LH+ +       +E L+   + 
Sbjct: 1   ESPIKLHTEAAGSYAITEPIT--RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 250 KSLAYIVDNDRK----MTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVS 305
           + +A   D +       T L LA    + R+V  ++    +       +          +
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI--YNKSERSALHQAAA 116

Query: 306 FDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQ 365
                +   + N   ++  I + D+ G T L ++A              V    +     
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 366 NISVKHITRYGFPQL 380
                     G   L
Sbjct: 177 AARKDSEKYKGRTAL 191

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 1e-11
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 23/228 (10%)

Query: 122 DEKNTALHEAMQHRSLDVVKILIK---EDPAVPYSTNGCGETPLYMAAERGFEKMLTEIL 178
           ++ +T LH A+   +L  V  L+    +        N   +TPL++A       ++  ++
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 179 ENCPSVAHEGPSGKTALHAAAV--NINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF 236
               S       G+TA H A    +   +  +          +   +  G T LH A   
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 237 DRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW 296
           +     +LLL     +  +     +   L  A  +     + +++             G 
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSP-LIHAV-ENNSLSMVQLLLQHGANVNAQMYSGS 178

Query: 297 NVLHFAMVSFDASDLKHLLNNYPIVRNLI------NDKDKEGNTPLHL 338
           + LH A                P+VR L+      + K+   +TPL +
Sbjct: 179 SALHSASGR----------GLLPLVRTLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 50/231 (21%), Positives = 90/231 (38%), Gaps = 19/231 (8%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           GD PLH+A   G+   V  L+ + ++  +EL+            + N+ + T LH A+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD------------IYNNLRQTPLHLAVIT 50

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEK---MLTEILENCPSVAHEGPSG 191
               VV++L+    +                  R       +L         +      G
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 110

Query: 192 KTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS 251
            TALH  AVN    + V+LLL++   +     + G +PL +A   +   + +LLL    +
Sbjct: 111 LTALH-VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 169

Query: 252 LAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFA 302
           +   + +      LH A+G+G L +V  ++    +   L +      L  A
Sbjct: 170 VNAQMYSGSSA--LHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 38/226 (16%), Positives = 78/226 (34%), Gaps = 32/226 (14%)

Query: 34  NKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAK---GDAPLHVAAK------ 84
           + +T LH+ ++  +         V +++ +     + ++        PLH+A        
Sbjct: 2   DGDTPLHIAVVQGN------LPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 55

Query: 85  ---------------CGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH 129
                              +      E              +     L   N +  TALH
Sbjct: 56  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 115

Query: 130 EAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGP 189
            A+     + V++L++    +       G +PL  A E     M+  +L++  +V  +  
Sbjct: 116 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY 175

Query: 190 SGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY 235
           SG +ALH+A+     + +V+ L+          + +  TPL  A  
Sbjct: 176 SGSSALHSASGR-GLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARS 219

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 22/223 (9%)

Query: 7   LYEAAAKGEIEPFKEISNVLGRV-----VTHNNKNTILHVNIISRDRETIVSTEFVEQIL 61
           L+ A  +G +     + N+  +      + +N + T LH+ +I+     +          
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 62  EMCPSLLQSVNAKGDAPLHVAAKC---------------GHASVVTALIEIAKKQPKELE 106
                  Q+                               +   +TAL      + +E  
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAA 166
             +      +  +      + L  A+++ SL +V++L++       +    G + L+ A+
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYSGSSALHSAS 185

Query: 167 ERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVK 209
            RG   ++  ++ +    + +     T L  A      ID+++
Sbjct: 186 GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/85 (17%), Positives = 27/85 (31%)

Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN 354
           G   LH A+V  +   +  L+N +      ++  +    TPLHL       S  R++   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 355 VGGDYQAVNKQNISVKHITRYGFPQ 379
                        +      +  P 
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPT 87

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 1e-11
 Identities = 32/222 (14%), Positives = 62/222 (27%), Gaps = 18/222 (8%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           GD+ LH+A      ++   +I   K     L               N+ + T LH A+  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN------------FQNNLQQTPLHLAVIT 49

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
              ++ + L+                      +     +            H        
Sbjct: 50  NQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 109

Query: 195 ----LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
                   A     + +V+LL+     +  +    G T LH A       +  LLL    
Sbjct: 110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 169

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVD 292
                V      +   L  G+   R+ +++     E  +++ 
Sbjct: 170 D-VNRVTYQ-GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 32/190 (16%), Positives = 60/190 (31%), Gaps = 10/190 (5%)

Query: 158 GETPLYMAAERGFEKMLTEILENCPS----VAHEGPSGKTALHAAAVNINSIDVVKLLLD 213
           G++ L++A     + +  E++         +  +    +T LH A +         LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 214 KKKSLIGETDRYGWTPLHYASY--FDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQ 271
                + +        L           ++ +              N    T LHLA+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 272 GKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKE 331
           G L +VE ++S   +        G   LH A+   +   +  LL         +N    +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQ 177

Query: 332 GNTPLHLLAA 341
           G +P  L   
Sbjct: 178 GYSPYQLTWG 187

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 8/215 (3%)

Query: 125 NTALHEAMQHRSLDVVKILIK---EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
           ++ LH A+ H    +   +I+    D A     N   +TPL++A      ++   +L   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 182 PSVAHEGPSGKTALHAAAVN---INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDR 238
                    G T LH A       +   + +         I +   Y      + +    
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 122

Query: 239 NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNV 298
            +    LL S  +     +     TALHLA       +V  ++    +    V  +G++ 
Sbjct: 123 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN-RVTYQGYSP 181

Query: 299 LHFAMVSFDASDLKHLLN-NYPIVRNLINDKDKEG 332
                        + L       ++ L   +D+E 
Sbjct: 182 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN 354
           G + LH A++  + +    ++         +N ++    TPLHL     +      +   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 44/275 (16%), Positives = 74/275 (26%), Gaps = 34/275 (12%)

Query: 69  QSVNAKGDAPLHVAAKCGHASVVTALIE-----------------IAKKQPKELESGVES 111
             V     A    A   G    V  L+E                  A             
Sbjct: 34  TKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 112 TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFE 171
                +   ++E    LH A     LD+ + LI +   V    +           E   E
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEE 153

Query: 172 KMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLH 231
            +  E+      +       +  +   A            L+          + G T LH
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQW---------LNSGHINDVRHAKSGGTALH 204

Query: 232 YASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELV 291
            A+      + +LL+ +   +     +    T LH AA  GK      ++    +  E V
Sbjct: 205 VAAAKGYTEVLKLLIQARYDVNIKDYD--GWTPLHAAAHWGKEEACRILVENLCD-MEAV 261

Query: 292 DGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIN 326
           +  G      A       D+   L      +NL++
Sbjct: 262 NKVGQTAFDVA-----DEDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 2e-07
 Identities = 55/270 (20%), Positives = 88/270 (32%), Gaps = 20/270 (7%)

Query: 103 KELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPL 162
            +LE  V    +  +     +       A      + V  L++   A     N  G T L
Sbjct: 22  TDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTAL 77

Query: 163 YMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGET 222
           + A       M+  ++EN  ++      G   LHAAA          L    + + +G  
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL--ISQGAHVGAV 135

Query: 223 DRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
           +  G TPL  A       + +  +N           + +   L  A          + ++
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA---------RQWLN 186

Query: 283 YCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL 342
                       G   LH A        LK L+     V    N KD +G TPLH  A  
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV----NIKDYDGWTPLHAAAHW 242

Query: 343 CRDSFHRIVPWNVGGDYQAVNKQNISVKHI 372
            ++   RI+      D +AVNK   +   +
Sbjct: 243 GKEEACRIL-VENLCDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 20/225 (8%)

Query: 61  LEMCPSLLQ---SVNAK---GDAPLHVAAKCGHASVVTALIEIAKKQ----------PKE 104
            E    LL+    +N     G   LH A    +  +V  L+E                  
Sbjct: 53  TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA 112

Query: 105 LESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYM 164
             S       + L            E      +   + + +             E     
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 165 AAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDR 224
                       +     +      SG TALH AA      +V+KLL  + +  +   D 
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLL-IQARYDVNIKDY 230

Query: 225 YGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAA 269
            GWTPLH A+++ +     +L+ +   +   V+   + TA  +A 
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDM-EAVNKVGQ-TAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 43/274 (15%), Positives = 78/274 (28%), Gaps = 68/274 (24%)

Query: 128 LHEAMQHRSLDVVKILIKEDPAVPYSTNGC-------GETPLYMAAERGFEKMLTEILEN 180
           + +A Q R+  + + +  E    P                    A   G  + +  +LE 
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62

Query: 181 CPSVAHEGPSGKTALHAAAVN-------------------------------INSIDVVK 209
              + +    G TALH A ++                                     + 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIA 122

Query: 210 LLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKM------- 262
             L  + + +G  +  G TPL  A       + +  +N           + +        
Sbjct: 123 EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182

Query: 263 ------------------TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMV 304
                             TALH+AA +G   V++ +I    +   + D  GW  LH A  
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAH 241

Query: 305 SFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                  + L+ N       +   +K G T   +
Sbjct: 242 WGKEEACRILVENLC----DMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 27/115 (23%)

Query: 29  VVTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHA 88
           V    +  T LHV       E +       ++L      +   +  G  PLH AA  G  
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVL-------KLLIQARYDVNIKDYDGWTPLHAAAHWGKE 245

Query: 89  SVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKIL 143
                L+          E+  +  A       N    TA   A +    D++  L
Sbjct: 246 EACRILV----------ENLCDMEAV------NKVGQTAFDVADE----DILGYL 280

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 9e-08
 Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 191 GKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDK 250
               L  AA     +  V+ LL ++       +R+G T L    +    I         K
Sbjct: 2   AGDRLSGAAAR-GDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIAL----ELLK 56

Query: 251 SLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASD 310
             A     D   T+    A +       +++        + DG G   +H A+     + 
Sbjct: 57  QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 311 LKHLLNNYPIVRNLINDKDKEGNTPLHL 338
           +  L     +     + +D  G TPL L
Sbjct: 117 VSFLAAESDL-----HRRDARGLTPLEL 139

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 6/158 (3%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
              L  A     +  V+ L+  +   P + N  G+T L +         L  + +     
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
             +         AA         V     +  + +   D  G  P+H A       +   
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVL---VEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 245 LLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIIS 282
              + +S  +  D    +T L LA  +G   +V+ +  
Sbjct: 120 --LAAESDLHRRDAR-GLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 20/174 (11%)

Query: 74  KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQ 133
           +    L  AA  G    V  L+             V   A    G T  +       A+ 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLH---------RELVHPDALNRFGKTALQVMMFGSTAIA 51

Query: 134 HRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKT 193
                     + +  A P   +  G +P++ AA  GF   L  ++E+   V     +G  
Sbjct: 52  LE--------LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL 103

Query: 194 ALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN 247
            +H A    ++  V        +S +   D  G TPL  A       + ++L  
Sbjct: 104 PIHLAVQEGHTAVVSF---LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 8/134 (5%)

Query: 121 NDEKNTALHEAMQHRSLDVVKILIKE-----DPAVPYSTNGCGETPLYMAAERGFEKMLT 175
              K  +L EA++ R +  +     +     +     + +   ET L++A        L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL- 61

Query: 176 EILENCPS--VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYA 233
            I++         +  +GK +       +        LL + K+ I   +  G TPL  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 234 SYFDRNIIAELLLN 247
                    ELL  
Sbjct: 122 KRLKHEHCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 19/155 (12%), Positives = 38/155 (24%), Gaps = 17/155 (10%)

Query: 191 GKTALHAA--AVNINSIDVVKLLLDK-----KKSLIGETDRYGWTPLHYASYFDRNIIAE 243
               LH+   AV    I  +           +K  +        T LH A          
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 244 LLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAM 303
           ++    ++   +     K +               +++       E+ +  G   L  A 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 304 VSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHL 338
                      L +      L        N+ +H+
Sbjct: 123 ----------RLKHEHCEELLTQALSGRFNSHVHV 147

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 42/143 (29%)

Query: 73  AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALH--- 129
           A   A LH   +      +  L++           GV+ T +  L   ++   TALH   
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQA-------YADGVDLTEKIPLANGHEPDETALHLAV 53

Query: 130 EAMQHRSLDVVKILIK--------------------------------EDPAVPYSTNGC 157
            ++   SL +V  L++                                   A     N  
Sbjct: 54  RSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 113

Query: 158 GETPLYMAAERGFEKMLTEILEN 180
           GETPL +A     E     + + 
Sbjct: 114 GETPLDIAKRLKHEHCEELLTQA 136

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCP 182
           +    L EA +    D V+IL+      P++T+  G +PL++AA+ G       +L    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 183 SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIA 242
           S        +T              +  +L K  + +   D    T LH+A+  +   + 
Sbjct: 59  SRDARTKVDRT--PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 243 ELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE 278
           ELL+     + +      K TA  ++   G   + E
Sbjct: 117 ELLIKYGADV-HTQSKFCK-TAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 32/168 (19%), Positives = 55/168 (32%), Gaps = 20/168 (11%)

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
            L  AA+ G    V  L          + +G   T   + G +                 
Sbjct: 5   KLLEAARAGQDDEVRIL----------MANGAPFTTDWL-GTSPLHLAAQYGHFSTTEV- 52

Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
                 +        +      TPL+MAA  G   ++  +L++   V  +     TALH 
Sbjct: 53  ------LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHW 106

Query: 198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
           A    N  +VV+LL+      +    ++  T    +       +AE+L
Sbjct: 107 A-TEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 6e-05
 Identities = 22/146 (15%), Positives = 42/146 (28%), Gaps = 10/146 (6%)

Query: 193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSL 252
             L  AA      D V++L+         TD  G +PLH A+ +      E      ++ 
Sbjct: 4   KKLLEAARA-GQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTE---VLLRAG 57

Query: 253 AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLK 312
                  +        A       + E++          D      LH+A         +
Sbjct: 58  VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH----Q 113

Query: 313 HLLNNYPIVRNLINDKDKEGNTPLHL 338
            ++         ++ + K   T   +
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDI 139

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 9e-06
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 20/172 (11%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
           G+  L  AA  G    +T+L          L++ V   A+   G T  +     +  +  
Sbjct: 2   GNE-LASAAARGDLEQLTSL----------LQNNVNVNAQNGFGRTALQVMKLGNPEIAR 50

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
           R        +    A P   +  G   ++ AA  GF   L  +LE    V  E   G   
Sbjct: 51  R--------LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 102

Query: 195 LHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLL 246
               A     + VV+ L+    S +G  +  G T    A  + RN +  L+ 
Sbjct: 103 -LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 19/148 (12%), Positives = 42/148 (28%), Gaps = 9/148 (6%)

Query: 193 TALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSL 252
             L +AA     ++ +  LL    + +   + +G T L      +  I   LLL      
Sbjct: 3   NELASAAAR-GDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRLLLRGANPD 60

Query: 253 AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLK 312
                    +     A          + +    E    V+           ++     L+
Sbjct: 61  LKDRTGFAVIHDAARAGFL-------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 113

Query: 313 HLLNNYPIVRNLINDKDKEGNTPLHLLA 340
            +        + +  ++ +G+T   L  
Sbjct: 114 VVEFLVKHTASNVGHRNHKGDTACDLAR 141

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 5/158 (3%)

Query: 126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA 185
             L  A     L+ +  L++ +     + NG G T L +      E     +L       
Sbjct: 3   NELASAAARGDLEQLTSLLQNN-VNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 186 HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL 245
            +         AA               + ++ +   D  G  PLH A+      + E L
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTL---LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 246 LNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY 283
           +    S     ++    TA  LA   G+  VV  + + 
Sbjct: 119 VKHTASNVGHRNHK-GDTACDLARLYGRNEVVSLMQAN 155

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 3e-04
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 3/127 (2%)

Query: 122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENC 181
           +     L  A     ++ V+ L++         +        M         L  +    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 182 PSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNII 241
           P+ A      +    AA        VV     +  + +   D +G  P+  A       +
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVL---HRAGARLDVRDAWGRLPVDLAEELGHRDV 117

Query: 242 AELLLNS 248
           A  L  +
Sbjct: 118 ARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 22/136 (16%), Positives = 34/136 (25%), Gaps = 18/136 (13%)

Query: 78  PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSL 137
            L  AA  G    V AL+E           G    A    G    +        +     
Sbjct: 6   WLATAAARGRVEEVRALLEA----------GANPNAPNSYGRRPIQVMMMGSARVAELL- 54

Query: 138 DVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHA 197
                 +        +       P++ AA  GF   L  +      +      G+  +  
Sbjct: 55  ------LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 108

Query: 198 AAVNINSIDVVKLLLD 213
           A       DV + L  
Sbjct: 109 AEEL-GHRDVARYLRA 123

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 6/121 (4%)

Query: 125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSV 184
           +     A+++  LD VK  + +   V  +  G  +   Y A     E +   +L+     
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 185 AHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAEL 244
           A +       L A      S   +      K +        G T L          I  L
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLL---LSKGADKTVKGPDGLTALEATD---NQAIKAL 116

Query: 245 L 245
           L
Sbjct: 117 L 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 23/138 (16%), Positives = 33/138 (23%), Gaps = 22/138 (15%)

Query: 75  GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH 134
            D     A K G    V   +                  +        E           
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVA-----------------KGEDVNRTLEGGRKPLHYAAD 44

Query: 135 RSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTA 194
                +   +    A   + +    TPL  A   G    +  +L        +GP G TA
Sbjct: 45  CGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 104

Query: 195 LHAAAVNINSIDVVKLLL 212
           L A          +K LL
Sbjct: 105 LEATDN-----QAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	577
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-47  Score=391.73  Aligned_cols=365  Identities=22%  Similarity=0.263  Sum_probs=323.3

Q ss_pred             HHHHHHHHcCCcHHHHHhhhhcCCc-cccCCCCccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHH
Q 008102            5 PLLYEAAAKGEIEPFKEISNVLGRV-VTHNNKNTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAA   83 (577)
Q Consensus         5 ~~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~   83 (577)
                      ++||.||..|+.++|++|++.|.++ ..+..|+||||+|+.+|+   .+++++|++.    +..++.++.+|.||||+|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~---~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~   74 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH---TEVAKYLLQN----KAKVNAKAKDDQTPLHCAA   74 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC---HHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHC----cCCCCCCCCCCCCHHHHHH
Confidence            5799999999999999999999887 556689999999999999   9999999883    6778999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHcCCchhhccccc-----------------hHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhc
Q 008102           84 KCGHASVVTALIEIAKKQPKELESGVES-----------------TARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKE  146 (577)
Q Consensus        84 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  146 (577)
                      ..|+.+++++|++...+...........                 .........+.++.++|+.|+..++.++++.|+++
T Consensus        75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~  154 (408)
T d1n11a_          75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  154 (408)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999876543211111000                 01122456678899999999999999999999999


Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCC
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYG  226 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g  226 (577)
                      +.++. ..+..|.+||++|+..|+.+++++|+++|++++..+..|.||+|.+... ...+....++..... ....+..+
T Consensus       155 ~~~~~-~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~  231 (408)
T d1n11a_         155 DAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGS-ANAESVQG  231 (408)
T ss_dssp             TCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             CCCCC-cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhcc-chhhhhhhhhhcccc-ccccCCCC
Confidence            88775 6777899999999999999999999999999999999999999999999 999999999888776 56778889


Q ss_pred             CcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcC
Q 008102          227 WTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF  306 (577)
Q Consensus       227 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  306 (577)
                      .|||+.|+..++.++++.+.+.+....  ..+..|.||++.|+..++.+++++|++++.+ ++..+..+.||||.++..+
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~  308 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGN--LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYG  308 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSS
T ss_pred             CCHHHHHHHhCcHhHhhhhhccccccc--cccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccC
Confidence            999999999999999999999887664  2344789999999999999999999999988 7788899999999999999


Q ss_pred             ChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHH
Q 008102          307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIR  385 (577)
Q Consensus       307 ~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~  385 (577)
                      +.++++++++.    |.++|.+|.+|+||||+|++.| ...+.++|+++|+|+|.+|++|+||+++|. .|+.++++.|+
T Consensus       309 ~~~~~~~ll~~----g~~in~~d~~G~T~Lh~A~~~g-~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         309 NIKLVKFLLQH----QADVNAKTKLGYSPLHQAAQQG-HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             CSHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cceeeeeeccc----cccccccCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999998    9999999999999999999998 567788888999999999999999999999 78889998886


Q ss_pred             HH
Q 008102          386 EL  387 (577)
Q Consensus       386 ~~  387 (577)
                      .+
T Consensus       384 ~~  385 (408)
T d1n11a_         384 VV  385 (408)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-41  Score=343.35  Aligned_cols=318  Identities=26%  Similarity=0.303  Sum_probs=289.2

Q ss_pred             CccceeeeecCCccchHHHHHHHHHHhhCccccccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHH
Q 008102           36 NTILHVNIISRDRETIVSTEFVEQILEMCPSLLQSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQ  115 (577)
Q Consensus        36 ~t~Lh~A~~~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~  115 (577)
                      -||||+||.+|+   .+++++|++    .|..++..|..|.||||+|++.|+.++|++|+++|++               
T Consensus         1 ~TpL~~Aa~~g~---~~~v~~Ll~----~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---------------   58 (408)
T d1n11a_           1 LTPLHVASFMGH---LPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---------------   58 (408)
T ss_dssp             CCHHHHHHHHTC---HHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------------
T ss_pred             CChHHHHHHCcC---HHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC---------------
Confidence            389999999999   999999987    5778899999999999999999999999999999876               


Q ss_pred             hhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCC--------------------------------CcCCCCCCChHHH
Q 008102          116 MLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAV--------------------------------PYSTNGCGETPLY  163 (577)
Q Consensus       116 ~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--------------------------------~~~~~~~g~tpL~  163 (577)
                       ++.+|.+|.||||+|+..|+.+++++|+...++.                                ....+..+.++++
T Consensus        59 -i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  137 (408)
T d1n11a_          59 -VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH  137 (408)
T ss_dssp             -SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHH
Confidence             4678999999999999999999999999765432                                1234567889999


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHH
Q 008102          164 MAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAE  243 (577)
Q Consensus       164 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  243 (577)
                      .|+..++.++++.|++++++++..+..|.+|||.|+.. ++.+++++|++++.+ ++..+..|.||+|.+....+.+...
T Consensus       138 ~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~-~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~~~~~~~~~~~~~  215 (408)
T d1n11a_         138 VAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR  215 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHT-TCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHc-CCHHHHHHHHhcCCc-ccccCCCCCCcchhhhccchhhhhh
Confidence            99999999999999999999999999999999999999 999999999999887 6888999999999999999999999


Q ss_pred             HHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccc
Q 008102          244 LLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRN  323 (577)
Q Consensus       244 ~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  323 (577)
                      .++.......  ..+..+.||++.|+..+..++++.+...... .+..|..|.||+|.|+..++.+++++|+++    |.
T Consensus       216 ~l~~~~~~~~--~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~----g~  288 (408)
T d1n11a_         216 SLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKH----GV  288 (408)
T ss_dssp             HHHHTTCCTT--CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH----TC
T ss_pred             hhhhcccccc--ccCCCCCCHHHHHHHhCcHhHhhhhhccccc-cccccCCCCChhhhhhhcCcHHHHHHHHHC----CC
Confidence            9998776654  3344689999999999999999999998877 677899999999999999999999999998    99


Q ss_pred             cccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          324 LINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       324 ~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      +++..+..+.||||.++..+ ...+.+.+++.|+++|.+|.+|.|||++|+ .++.+++++|.+
T Consensus       289 ~~~~~~~~~~t~L~~~~~~~-~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~  351 (408)
T d1n11a_         289 MVDATTRMGYTPLHVASHYG-NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  351 (408)
T ss_dssp             CTTCCCSSCCCHHHHHHHSS-CSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccchhhcccC-cceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998 455667788899999999999999999999 889999999988

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-34  Score=272.54  Aligned_cols=247  Identities=21%  Similarity=0.159  Sum_probs=149.4

Q ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCC
Q 008102           69 QSVNAKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP  148 (577)
Q Consensus        69 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  148 (577)
                      ...+.+|.||||+||+.|+.+++++|++.+++.             ..++.+|..|.||||+|+..|+.+++++|+++|.
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~-------------~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga   69 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH-------------EYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA   69 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS-------------GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------ccccCcCCCCCCccchHHhhcccccccccccccc
Confidence            456889999999999999999999999987663             2367788999999999999999999999999998


Q ss_pred             CCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCc
Q 008102          149 AVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWT  228 (577)
Q Consensus       149 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~t  228 (577)
                      ++. ..|..|.||||+|+..|+.++++.|++.+.........   .+...... ...+.                  ...
T Consensus        70 ~i~-~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~~~~~-~~~~~------------------~~~  126 (255)
T d1oy3d_          70 GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TYLTQSQD-CTPDT------------------SHA  126 (255)
T ss_dssp             CSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------------
T ss_pred             ccc-ccccccchhhhhhhccCchHHHHHHHhhccchhcccch---hhhhHHhh-hcccc------------------hHH
Confidence            876 67888999999999999999999998876443221110   00000000 00000                  000


Q ss_pred             HHHHHHhcCc-HHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCC
Q 008102          229 PLHYASYFDR-NIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFD  307 (577)
Q Consensus       229 pL~~A~~~g~-~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~  307 (577)
                      ++........ ..........+...  ...+..|.||||+|+..|+.+++++|++.+++.....+..|.||||+|++.++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~i--n~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~  204 (255)
T d1oy3d_         127 PAAVDSQPNPENEEEPRDEDWRLQL--EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA  204 (255)
T ss_dssp             -----------------CCCGGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHhhcchhHHHHHHhhhcCccc--ccccccCcccccccccccccccccchhcccccccccccccccccccccccccH
Confidence            0000000000 00011111111111  12233556666666666666666666666655444445556666666666666


Q ss_pred             hhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          308 ASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       308 ~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      .+++++|+++    |+++|.+|.+|+||||+|++.+ ...+.++|+++||+
T Consensus       205 ~~~v~~Ll~~----gadin~~d~~g~t~L~~A~~~~-~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         205 ASVLELLLKA----GADPTARMYGGRTPLGSALLRP-NPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHHHHT----TCCTTCCCTTSCCHHHHHHTSS-CHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHC----CCCCCCCCCCCCCHHHHHHHCC-CHHHHHHHHHcCCC
Confidence            6666666665    5666666666666666666666 34455555666664

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.8e-34  Score=272.72  Aligned_cols=240  Identities=20%  Similarity=0.117  Sum_probs=176.0

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--cCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 008102          118 GMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--YSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTAL  195 (577)
Q Consensus       118 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L  195 (577)
                      +..+++|+||||+|++.|+.+++++|++.+++..  ..+|..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL   82 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence            4568899999999999999999999999876533  46788899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHH
Q 008102          196 HAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLR  275 (577)
Q Consensus       196 ~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  275 (577)
                      |+|+.. ++.++++.|++.......    ................                   ....++..........
T Consensus        83 ~~A~~~-~~~~~~~~Ll~~~~~~~~----~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  138 (255)
T d1oy3d_          83 HLACRV-RAHTCACVLLQPRPSHPR----DASDTYLTQSQDCTPD-------------------TSHAPAAVDSQPNPEN  138 (255)
T ss_dssp             HHHTTT-TCHHHHHHHSSSCCSSCC----CC-------------------------------------------------
T ss_pred             hhhhcc-CchHHHHHHHhhccchhc----ccchhhhhHHhhhccc-------------------chHHHHHHHhhcchhH
Confidence            999999 999999999886544211    1111111100000000                   0111111111111111


Q ss_pred             HHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccC-CCCCCCcHHHHHHHhCCccceeccccC
Q 008102          276 VVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLIND-KDKEGNTPLHLLAALCRDSFHRIVPWN  354 (577)
Q Consensus       276 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~-~d~~G~TpLh~A~~~~~~~~~~~lL~~  354 (577)
                      ....+.......++.+|..|+||||+|+.+++.+++++|+++    +.+.+. ++..|+||||+|++.+ ...+.++|++
T Consensus       139 ~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~TpL~~A~~~~-~~~~v~~Ll~  213 (255)
T d1oy3d_         139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GADLNKPEPTCGRTPLHLAVEAQ-AASVLELLLK  213 (255)
T ss_dssp             -----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTT-CHHHHHHHHH
T ss_pred             HHHHHhhhcCcccccccccCcccccccccccccccccchhcc----ccccccccccccccccccccccc-HHHHHHHHHH
Confidence            222222222233677899999999999999999999999998    666664 5678999999999999 5666678889


Q ss_pred             cccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          355 VGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       355 ~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      +|+|++.+|+.|+||+++|. .++.+++++|.+
T Consensus       214 ~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         214 AGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999998 889999999888

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-33  Score=258.48  Aligned_cols=220  Identities=21%  Similarity=0.251  Sum_probs=160.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      ++++|+.+|+.|+.+.|+.+++..               +..++.+|.+|+||||+|+..|+.+++++|++.+.... ..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~---------------~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~-~~   66 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD---------------KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DK   66 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC---------------GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC---------------CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccc-cc
Confidence            356777788888888887777652               23356778888888888888888888888888776654 44


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      +..+.++++.++..|+.+++++|++++++++..+..|.||||+|+.. ++.+++++|++.+.+ ++..+..|.||||+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~-~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~  144 (223)
T d1uoha_          67 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGAN-PDAKDHYEATAMHRAA  144 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCccchhhh
Confidence            55577888888888888888888888888888888888888888887 788888888877766 5677777777777777


Q ss_pred             hcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHH
Q 008102          235 YFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL  314 (577)
Q Consensus       235 ~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  314 (577)
                      ..++.+++++|.+.+.+++  ..+..|.||||.|+..|+.+++++|+++|++ ++.+|.+|+||||+| ..|+.++++.|
T Consensus       145 ~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~L  220 (223)
T d1uoha_         145 AKGNLKMIHILLYYKASTN--IQDTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRM  220 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCSC--CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHH
T ss_pred             hcCCcchhhhhccccceee--eccCCCCceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcc
Confidence            7777777777777766654  2233567777777777777777777776666 566677777777766 35666666666


Q ss_pred             Hh
Q 008102          315 LN  316 (577)
Q Consensus       315 l~  316 (577)
                      ++
T Consensus       221 l~  222 (223)
T d1uoha_         221 VE  222 (223)
T ss_dssp             HC
T ss_pred             cC
Confidence            64

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-33  Score=260.05  Aligned_cols=218  Identities=25%  Similarity=0.305  Sum_probs=190.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNIN  203 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  203 (577)
                      ++++|+.++..|+.+.++.+++.++.....+|..|+||||+|+..|+.+++++|++.+.+....+..+.++++.++.. +
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~   81 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-G   81 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-T
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-c
Confidence            468999999999999999999988888888999999999999999999999999999998888888999999999999 9


Q ss_pred             CHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          204 SIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       204 ~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      +.+++++|++++.+ ++..|..|.||||+|+..|+.+++++|+++|.+++  ..+..|.||||+|+..++.+++++|.+.
T Consensus        82 ~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~--~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          82 RDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCccchhhhhcCCcchhhhhccc
Confidence            99999999999877 78889999999999999999999999999988775  3344788899999999999988888888


Q ss_pred             CCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccc
Q 008102          284 CPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVP  352 (577)
Q Consensus       284 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL  352 (577)
                      +.+ ++.+|..|+||||+|+..++.+++++|++.    |++++.+|.+|+||||+|. .+ ...+.++|
T Consensus       159 ~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~----Gad~~~~d~~g~tpl~~A~-~~-~~~i~~~L  220 (223)
T d1uoha_         159 KAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQ----GASIYIENKEEKTPLQVAK-GG-LGLILKRM  220 (223)
T ss_dssp             TCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHCC-TT-HHHHHHHH
T ss_pred             cce-eeeccCCCCceeccccccCcHHHHHHHHHC----CCCCCCCCCCCCCHHHHHH-CC-CHHHHhcc
Confidence            887 778888899999999999999999998887    8888888888999998874 44 33343433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-33  Score=269.43  Aligned_cols=266  Identities=21%  Similarity=0.208  Sum_probs=225.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhcc-CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGM-TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY  152 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  152 (577)
                      +++|+||.|++.|+.++|++|++.|++.                +. .+..|.||||+|+..|+.+++++|++.+.... 
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~di----------------n~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~-   66 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANV----------------NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-   66 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCT----------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCc----------------CccCCCCCCCHHHHHHHcCCHHHhhhhcccccccc-
Confidence            4579999999999999999999988763                33 34579999999999999999999999988765 


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCc---------cccCC
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSL---------IGETD  223 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~---------~~~~d  223 (577)
                      ..+..+.+|.+.++..+..+.....++...+....+..+.++++.|+.. ++...+..++....+.         ....+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (285)
T d1wdya_          67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLR  145 (285)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCCHHHHHTT
T ss_pred             ccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHh-cchhhhhhhhhhcccccccccchhhhhhhc
Confidence            5666789999999999999999999999888777888999999999999 9999998888765442         22345


Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHh----hhcCcHHHHHHHHhhCCcccccccCCCCch
Q 008102          224 RYGWTPLHYASYFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLA----AGQGKLRVVEEIISYCPECCELVDGRGWNV  298 (577)
Q Consensus       224 ~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A----~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  298 (577)
                      ..|.||||+|++.|+.+++++|++. +.+++  ..+..+.++.+.+    ...+..+++++|++++++ ++.+|..|+||
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~  222 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTP  222 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCH
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCcc--cccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCc
Confidence            6699999999999999999999975 55553  2233566665543    344566799999999998 78889999999


Q ss_pred             hhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhh
Q 008102          299 LHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNK  364 (577)
Q Consensus       299 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~  364 (577)
                      ||+|+..++.+++++|++.   .|.++|.+|.+|+||||+|++.+ ...+.++|+++|||+|++|.
T Consensus       223 L~~a~~~~~~~~v~~lL~~---~g~din~~d~~G~TpL~~A~~~~-~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELK-LKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTT-CHHHHHHHHHHSSCSCCSSC
T ss_pred             cchhhhcCcHHHHHHHHHc---CCCCCcCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCcccC
Confidence            9999999999999999975   37899999999999999999999 57788889999999999873

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-33  Score=262.51  Aligned_cols=224  Identities=21%  Similarity=0.236  Sum_probs=198.2

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCC---CCCCCCCCHHHHHHHc
Q 008102          125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVA---HEGPSGKTALHAAAVN  201 (577)
Q Consensus       125 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~  201 (577)
                      +||||+|++.|+.++++.|++..+.....+|.+|.||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5899999999999999999998777777899999999999999999999999999998876   4567899999999999


Q ss_pred             CCCHHHHHHHHhhCCCc-cccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102          202 INSIDVVKLLLDKKKSL-IGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI  280 (577)
Q Consensus       202 ~~~~~~~~~Ll~~~~~~-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  280 (577)
                       +..++++.++..+... ....+..+.||++.++..++.++++.|++.+....  ..+..|.||||+|+..|+.+++++|
T Consensus        81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          81 -GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             -TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             -cccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccc--ccCCCCCCccchhhhcccccccccc
Confidence             9999999988876542 44567788999999999999999999999887764  3345789999999999999999999


Q ss_pred             HhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          281 ISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       281 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      ++.++..++.+|..|+||||+|+.+++.+++++|+++   .|+++|.+|.+|+||||+|+..    .++++|+++|+|
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~---~gad~~~~d~~g~t~l~~A~~~----~~~~~Ll~~g~d  228 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVALNE----QVKKFFLNNVVD  228 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HCCCSCCCCTTSCCTGGGCSCH----HHHHHHHHHCCC
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHh---cCCCCCCcCCCCCCHHHHHhhH----HHHHHHHHcCCC
Confidence            9998877889999999999999999999999999964   3889999999999999999843    467888888886

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.1e-31  Score=257.78  Aligned_cols=258  Identities=21%  Similarity=0.248  Sum_probs=225.4

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcC
Q 008102          123 EKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNI  202 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  202 (577)
                      +++|+||.|++.|+.++|++|+++|++++...+..|.||||+|+..|+.+++++|++.+......+..+.+|.+.++.. 
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~-   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc-
Confidence            3579999999999999999999999999877788899999999999999999999999999998999999999999999 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccc--------hhcCCCCCcchhHhhhcCcH
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAY--------IVDNDRKMTALHLAAGQGKL  274 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~--------~~~~~~g~tpL~~A~~~g~~  274 (577)
                      +..+.....++.... ....+..+.++++.|+..++...++.+++...+...        ......|.||||+|+.+|+.
T Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  161 (285)
T d1wdya_          83 GSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV  161 (285)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred             CCccccchhhhhccc-ccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCH
Confidence            999999999988766 566788899999999999999999998886554321        12234689999999999999


Q ss_pred             HHHHHHHhhCCcccccccCCCCchhhHHHhcC----ChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceec
Q 008102          275 RVVEEIISYCPECCELVDGRGWNVLHFAMVSF----DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRI  350 (577)
Q Consensus       275 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~----~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~  350 (577)
                      +++++|+++....++..+..|.++.+.+....    ..+++++|+++    |+++|.+|..|.||||.|++.++...+..
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~----ga~~n~~~~~g~t~L~~a~~~~~~~~v~~  237 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH----GADVNVRGERGKTPLILAVEKKHLGLVQR  237 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT----TCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHC----CCCCCccCCCCCCccchhhhcCcHHHHHH
Confidence            99999998755457889999999888765543    34689999998    99999999999999999999996655555


Q ss_pred             cccCcccchhhhhhCCCChHHHHh-cCCcchHHHHHH
Q 008102          351 VPWNVGGDYQAVNKQNISVKHITR-YGFPQLEQEIRE  386 (577)
Q Consensus       351 lL~~~g~d~~~~n~~G~t~l~~a~-~~~~~~~~~l~~  386 (577)
                      +|...|+|++.+|.+|.|||++|+ .++.++++.|.+
T Consensus       238 lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~  274 (285)
T d1wdya_         238 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            555689999999999999999999 889999999988

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.6e-31  Score=250.00  Aligned_cols=219  Identities=22%  Similarity=0.268  Sum_probs=114.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCC--cCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVP--YST  154 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~  154 (577)
                      ||||+||+.|+.++++.|++....               .++.+|.+|.||||+|+..|+.+++++|+++++++.  ...
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~---------------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~   66 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPS---------------LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP   66 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGG---------------GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCC---------------cccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccc
Confidence            455555555555555555554211               134455555555555555555555555555554432  234


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCC--CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHH
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPS--VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY  232 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  232 (577)
                      +..|.+|+++++..+..++++.++..+..  ....+..+.++++.++.. ++.++++.|++.+.. ....|..|+||||+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~  144 (229)
T d1ixva_          67 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGAS-VRIKDKFNQIPLHR  144 (229)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-SCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-chhhhhhhhhhhccc-ccccCCCCCCccch
Confidence            44555555555555555555555555432  222344455555555555 555555555555544 34455555555555


Q ss_pred             HHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh-CCcccccccCCCCchhhHHHhcCChhHH
Q 008102          233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY-CPECCELVDGRGWNVLHFAMVSFDASDL  311 (577)
Q Consensus       233 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  311 (577)
                      |+..|+.+++++|++.+....... +..|.||||+|+.+|+.+++++|+++ |.+ ++.+|..|+||||+|+.   .+++
T Consensus       145 a~~~~~~~~~~~Ll~~~~~~in~~-d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~  219 (229)
T d1ixva_         145 AASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVK  219 (229)
T ss_dssp             HHHHTCHHHHHHHHTTTCCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHH
T ss_pred             hhhccccccccccccccccccccc-ccccCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHH
Confidence            555555555555555543322222 22555566666655666666655543 344 45555666666666552   3455


Q ss_pred             HHHHhc
Q 008102          312 KHLLNN  317 (577)
Q Consensus       312 ~~Ll~~  317 (577)
                      ++|+++
T Consensus       220 ~~Ll~~  225 (229)
T d1ixva_         220 KFFLNN  225 (229)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            566555

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=9.7e-33  Score=266.14  Aligned_cols=253  Identities=19%  Similarity=0.188  Sum_probs=202.1

Q ss_pred             CcHHHHHHH-hCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCC-CCCCcHhHHHHHcCCHHHHHHHH--------h
Q 008102           76 DAPLHVAAK-CGHASVVTALIEIAKKQPKELESGVESTARQMLGMTN-DEKNTALHEAMQHRSLDVVKILI--------K  145 (577)
Q Consensus        76 ~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll--------~  145 (577)
                      +||||++++ .|+.++++.|.+.+.                  +..+ .+|+||||+|+..|+.++++.|+        +
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~------------------n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~   62 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESV------------------NIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA   62 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTT------------------TTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCC------------------CcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHH
Confidence            588886655 467677766655432                  2333 46999999999999999888774        5


Q ss_pred             cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC--CccccCC
Q 008102          146 EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK--SLIGETD  223 (577)
Q Consensus       146 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~--~~~~~~d  223 (577)
                      .|++++ .+|..|.||||+|+..|+.+++++|+++|++++.++..|.||++.|+.. ++.++.+.+.....  ...+..+
T Consensus        63 ~Gadvn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~  140 (277)
T d2fo1e1          63 AGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELD  140 (277)
T ss_dssp             TCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCC
T ss_pred             cCCCcc-ccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh-cchhhhhhhhhcccccccccccc
Confidence            577776 6789999999999999999999999999999999999999999999999 99999998876542  2245678


Q ss_pred             CCCCcHHHHHHhcCcHH---HHHHHhcCCCCc------cchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCC
Q 008102          224 RYGWTPLHYASYFDRNI---IAELLLNSDKSL------AYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGR  294 (577)
Q Consensus       224 ~~g~tpL~~A~~~g~~~---~v~~Ll~~~~~~------~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  294 (577)
                      ..+.++.+.+...+..+   .+..+.+.....      .....+..|.||||.++..++.+++++++...+...+.+|..
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~  220 (277)
T d2fo1e1         141 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED  220 (277)
T ss_dssp             TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT
T ss_pred             cccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCC
Confidence            88999999988876533   344444332211      111233478999999999999999998887777768889999


Q ss_pred             CCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceecccc
Q 008102          295 GWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPW  353 (577)
Q Consensus       295 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~  353 (577)
                      |+||||+|+..|+.+++++|+++    |+++|.+|.+|+||||+|++.|+ ..+.++|.
T Consensus       221 g~tpL~~A~~~g~~~iv~~Ll~~----gadin~~d~~G~T~L~~A~~~~~-~~iv~lL~  274 (277)
T d2fo1e1         221 GKTPIMLAAQEGRIEVVMYLIQQ----GASVEAVDATDHTARQLAQANNH-HNIVDIFD  274 (277)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT----TCCSSCCCSSSCCHHHHHHHTTC-HHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHC----cCCCCCcCCCCCCHHHHHHHcCC-HHHHHHHH
Confidence            99999999999999999999998    99999999999999999999995 44444443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=8.4e-32  Score=261.62  Aligned_cols=236  Identities=21%  Similarity=0.239  Sum_probs=163.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCc
Q 008102           73 AKGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPY  152 (577)
Q Consensus        73 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~  152 (577)
                      .++.|+|+.||..|+.++|++|++.|++                ++.+|.+|.||||+|+..|+.+++++|++++.+.. 
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad----------------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~-  100 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD----------------INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-  100 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC----------------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC----------------CCccCCCCCcHHHHHHhcCCceeeeeecccccccc-
Confidence            3456999999999999999999998876                46689999999999999999999999999987764 


Q ss_pred             CCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHH
Q 008102          153 STNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHY  232 (577)
Q Consensus       153 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~  232 (577)
                      ..+..+.+||+.++..|+.++++.|++++...+..+..+.+++++|+.. +..+.++.++.............+..+.  
T Consensus       101 ~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~--  177 (291)
T d1s70b_         101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE-AMEELLQNEVNRQGVDIEAARKEEERIM--  177 (291)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH-HHHHHHHHHHHHHTCCHHHHHHHHHHHH--
T ss_pred             cccccccccccccccccccchhhcccccCcccccccccCcccccccccc-ccchhccccccccccccccccccccccc--
Confidence            5677789999999999999999999999988888889999999999888 8888888888654331111111111111  


Q ss_pred             HHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHH
Q 008102          233 ASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLK  312 (577)
Q Consensus       233 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  312 (577)
                           .......+.......  ......|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.++++
T Consensus       178 -----~~~~~~~~~~~~~~~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~  249 (291)
T d1s70b_         178 -----LRDARQWLNSGHIND--VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACR  249 (291)
T ss_dssp             -----HHHHHHHHHHTCCCC--CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             -----cccchhhhccccccc--ccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHH
Confidence                 111111222221111  11223456666666666666666666666655 4555666666666666666666666


Q ss_pred             HHHhccccccccccCCCCCCCcHHHHHH
Q 008102          313 HLLNNYPIVRNLINDKDKEGNTPLHLLA  340 (577)
Q Consensus       313 ~Ll~~~~~~~~~~n~~d~~G~TpLh~A~  340 (577)
                      +|+++    |+++|.+|.+|+||||+|+
T Consensus       250 lLl~~----Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         250 ILVEN----LCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHT----TCCTTCCCTTSCCTTTSCC
T ss_pred             HHHHC----CCCCCCcCCCCCCHHHHHH
Confidence            66665    6666666666666666664

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.4e-31  Score=258.32  Aligned_cols=247  Identities=21%  Similarity=0.157  Sum_probs=204.8

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHc
Q 008102          122 DEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVN  201 (577)
Q Consensus       122 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~  201 (577)
                      .++.|||+.||..|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++.+....+..+.+||+.++..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            346799999999999999999999999875 7889999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHH
Q 008102          202 INSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEII  281 (577)
Q Consensus       202 ~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  281 (577)
                       ++.++++.|++.+.. .+..|..+.+|+++|+..+..+.++.++............ ....+.        .......+
T Consensus       117 -~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~~--------~~~~~~~~  185 (291)
T d1s70b_         117 -GYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK-EEERIM--------LRDARQWL  185 (291)
T ss_dssp             -TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHH-HHHHHH--------HHHHHHHH
T ss_pred             -cccchhhcccccCcc-cccccccCccccccccccccchhccccccccccccccccc-cccccc--------cccchhhh
Confidence             999999999998877 6788999999999999999999999988643222111110 010111        11222223


Q ss_pred             hhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhh
Q 008102          282 SYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQA  361 (577)
Q Consensus       282 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~  361 (577)
                      ..........+..|.||||.|+..++.++++.|++.    |+++|.+|.+|+||||+|+..| ...+.++|+++|+|++.
T Consensus       186 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~----g~din~~~~~g~TpL~~A~~~g-~~~iv~lLl~~Gadv~~  260 (291)
T d1s70b_         186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA----RYDVNIKDYDGWTPLHAAAHWG-KEEACRILVENLCDMEA  260 (291)
T ss_dssp             HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT----TCCTTCCCTTCCCHHHHHHHTT-CHHHHHHHHHTTCCTTC
T ss_pred             cccccccccccCCCCChhhHHHHcCChhhhcccccc----eecccccccCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCC
Confidence            333333556788899999999999999999999998    9999999999999999999999 46677888899999999


Q ss_pred             hhhCCCChHHHHhcCCcchHHHHHHHH
Q 008102          362 VNKQNISVKHITRYGFPQLEQEIRELS  388 (577)
Q Consensus       362 ~n~~G~t~l~~a~~~~~~~~~~l~~~~  388 (577)
                      +|+.|+||+|+|++   ++++.|.++.
T Consensus       261 ~d~~G~TaL~~A~e---~~~~~L~~~~  284 (291)
T d1s70b_         261 VNKVGQTAFDVADE---DILGYLEELQ  284 (291)
T ss_dssp             CCTTSCCTTTSCCS---GGGHHHHHHH
T ss_pred             cCCCCCCHHHHHHH---HHHHHHHHHh
Confidence            99999999999974   5666666643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=2e-31  Score=256.84  Aligned_cols=263  Identities=16%  Similarity=0.174  Sum_probs=167.3

Q ss_pred             HHHHHHHH-cCCcHHHHHhhhhcCCccccCCCCccceeeeecCCccchHHHHHHHHHH----hhCccccccccCCCCcHH
Q 008102            5 PLLYEAAA-KGEIEPFKEISNVLGRVVTHNNKNTILHVNIISRDRETIVSTEFVEQIL----EMCPSLLQSVNAKGDAPL   79 (577)
Q Consensus         5 ~~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~g~t~Lh~A~~~g~~~~~~~~~~ll~~~----~~~~~~~~~~~~~g~t~L   79 (577)
                      ++|+.+++ .|+.++.+.|.+.+++...+++|+||||+|+.+|+   .++++.|+...    -..|.+++.+|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~---~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS---AEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTC---CSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCC---HHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            34554333 36666677777777887665578999999999999   88888886542    234677888888888888


Q ss_pred             HHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCC--CCCcCCCCC
Q 008102           80 HVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDP--AVPYSTNGC  157 (577)
Q Consensus        80 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~  157 (577)
                      |+|++.|+.++|++|++.|++                ++.+|.+|.|||++|+..++.++++.+.....  ......+..
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad----------------~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGAD----------------PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC----------------SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             ccccccccccccccccccccc----------------cccccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            888888888888888887766                35577888888888888888888888776532  111245566


Q ss_pred             CChHHHHHHHhCCHH---HHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHH
Q 008102          158 GETPLYMAAERGFEK---MLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYAS  234 (577)
Q Consensus       158 g~tpL~~A~~~g~~~---~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~  234 (577)
                      +.++.+.+...+..+   .+..+.+........                           .....+..+..|.||||.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~g~t~L~~~~  195 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD---------------------------GAARKDSEKYKGRTALHYAA  195 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC---------------------------SGGGTSSSSCCCCCTHHHHH
T ss_pred             cchhHHHHHhccccccccccccccccccccccc---------------------------ccccccccccCCCCcccccc
Confidence            677777777665433   333333332111000                           00012334455666666666


Q ss_pred             hcCcHHHHHHHhcC-CCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHH
Q 008102          235 YFDRNIIAELLLNS-DKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKH  313 (577)
Q Consensus       235 ~~g~~~~v~~Ll~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~  313 (577)
                      ..++.+++++++.. +.+. . ..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++
T Consensus       196 ~~~~~~~~~~~l~~~~~~~-~-~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~l  272 (277)
T d2fo1e1         196 QVSNMPIVKYLVGEKGSNK-D-KQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDI  272 (277)
T ss_dssp             SSCCHHHHHHHHHHSCCCT-T-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccccc-c-ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            66666665554432 2222 1 2233566666666666666666666666666 55666666666666666666666666


Q ss_pred             HHh
Q 008102          314 LLN  316 (577)
Q Consensus       314 Ll~  316 (577)
                      |++
T Consensus       273 L~~  275 (277)
T d2fo1e1         273 FDR  275 (277)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=226.54  Aligned_cols=216  Identities=22%  Similarity=0.268  Sum_probs=119.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      +|+||||+||..|+.++|+.|++...+..            ..++.+|.+|+||||+|+..|+.++++.|++++++.+ .
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g------------~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~-~   68 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGG------------RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-A   68 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTT------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCC------------CCCCccCCCCCccceehhccccccccccccccccccc-c
Confidence            56777777777777777777766433211            1145566667777777777777777777776665554 4


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCC----CCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcH
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPS----VAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTP  229 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tp  229 (577)
                      ....|.++++.|...++.++++.+......    .+.......++|+.+... ......+.|.....+.....+..+.  
T Consensus        69 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~--  145 (228)
T d1k1aa_          69 LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIKSGR--  145 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTTCC--
T ss_pred             cccccccccccccccccccchhhhhhcccccccccccccccccccccccccc-ccchhhhhhhccccccccccccchh--
Confidence            455566666666666666666665554422    122333444555555555 5555555555444443333444444  


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChh
Q 008102          230 LHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDAS  309 (577)
Q Consensus       230 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~  309 (577)
                                                       +|++.|+..+..++++.+++.+.. .+.+|..|+||||+|+.+|+.+
T Consensus       146 ---------------------------------~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~  191 (228)
T d1k1aa_         146 ---------------------------------SPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLP  191 (228)
T ss_dssp             ---------------------------------CHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHH
T ss_pred             ---------------------------------hHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHcCCHH
Confidence                                             455555555555555555544444 3444555555555555555555


Q ss_pred             HHHHHHhccccccccccCCCCCCCcHHHHHHHhC
Q 008102          310 DLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALC  343 (577)
Q Consensus       310 ~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~  343 (577)
                      ++++|+++    |+++|.+|.+|+||||+|++++
T Consensus       192 ~v~~Ll~~----Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         192 LVRTLVRS----GADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHHT----TCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHHC----CCCCCCCCCCCCCHHHHHHhCC
Confidence            55555555    5555555555555555555544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=227.69  Aligned_cols=220  Identities=20%  Similarity=0.149  Sum_probs=166.5

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHh----cCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          123 EKNTALHEAMQHRSLDVVKILIK----EDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      +|+||||+|+..|+.++++.|++    .+.+++ .+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-ccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            57888888888888888777764    344443 5666677777777777777777777777777776677777777777


Q ss_pred             HHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHH
Q 008102          199 AVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVE  278 (577)
Q Consensus       199 ~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~  278 (577)
                      ... .+.++++............                                .........+|++.+.........+
T Consensus        81 ~~~-~~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~  127 (228)
T d1k1aa_          81 CEH-RSPTCLRALLDSAAPGTLD--------------------------------LEARNYDGLTALHVAVNTECQETVQ  127 (228)
T ss_dssp             HHT-TCHHHHHHHHHHSCTTSCC--------------------------------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             ccc-ccccchhhhhhcccccccc--------------------------------ccccccccccccccccccccchhhh
Confidence            766 6666666555433221000                                0011224567888888888888888


Q ss_pred             HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccc
Q 008102          279 EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGD  358 (577)
Q Consensus       279 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d  358 (577)
                      .+.....+.....+..|.+++|.|+..+...+++.+++.    +..++.+|..|+||||+|+..| ...+.++|+++|+|
T Consensus       128 ~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~----~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~Gad  202 (228)
T d1k1aa_         128 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH----GANVNAQMYSGSSALHSASGRG-LLPLVRTLVRSGAD  202 (228)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCBCTTSCBHHHHHHHHT-CHHHHHHHHHTTCC
T ss_pred             hhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh----ccccccccccCcchHHHHHHcC-CHHHHHHHHHCCCC
Confidence            888877776667788899999999999999999999998    8899999999999999999999 45666888899999


Q ss_pred             hhhhhhCCCChHHHHh-cCCcchH
Q 008102          359 YQAVNKQNISVKHITR-YGFPQLE  381 (577)
Q Consensus       359 ~~~~n~~G~t~l~~a~-~~~~~~~  381 (577)
                      ++.+|.+|+||+++|. .++.+++
T Consensus       203 ~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         203 SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhCCCcccc
Confidence            9999999999999998 5554443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-28  Score=227.36  Aligned_cols=197  Identities=21%  Similarity=0.295  Sum_probs=123.4

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC
Q 008102           74 KGDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS  153 (577)
Q Consensus        74 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~  153 (577)
                      +|+||||+|+..|+.++++.|++.....            ...++.+|.+|+||||+|++.|+.+++++|++.|+++. .
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~------------~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~   67 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD------------LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-L   67 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-C
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC------------CCCcccCCCCCCcccccccccccccccccccccccccc-c
Confidence            4777888887777765555544432111            11245677778888888888888888888877777664 5


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCC------CCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCC
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVA------HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGW  227 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~  227 (577)
                      .|..|.|||+.++..|+.++++.|++.+....      .....|.||||.|+.. ++.+++++++..+.......+.+|.
T Consensus        68 ~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~G~  146 (221)
T d1iknd_          68 RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGADVNAQEPCNGR  146 (221)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTTTCC
T ss_pred             cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhc-CChhheeeecccCcccccccccCCC
Confidence            67777778888777777777777777664322      2334456666666666 6666666666666654444445566


Q ss_pred             cHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCc
Q 008102          228 TPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPE  286 (577)
Q Consensus       228 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~  286 (577)
                      ||||+|++.|+.+++++|+++|++++  ..+..|.||||+|+..++.+++++|++...+
T Consensus       147 T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         147 TALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            66666666666666666666665553  2233566666666666666666666555443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-28  Score=225.29  Aligned_cols=191  Identities=20%  Similarity=0.179  Sum_probs=156.6

Q ss_pred             CCCcHhHHHHHcCCHHHHHH----HHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 008102          123 EKNTALHEAMQHRSLDVVKI----LIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAA  198 (577)
Q Consensus       123 ~g~t~Lh~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A  198 (577)
                      +|+||||+|+..|+.++++.    +...+.+++ .+|..|+||||+|+..|+.+++++|++.|++++..+..|.||||.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcc-cCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999999755554    445566654 7788999999999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHhhCCC-----ccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCc
Q 008102          199 AVNINSIDVVKLLLDKKKS-----LIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGK  273 (577)
Q Consensus       199 ~~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~  273 (577)
                      +.. ++.++++.|++.+..     ........|.||||.|+..++.+.+++|++.+...+.. ++..|.||||.|+..|+
T Consensus        80 ~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          80 CEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHH-TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTC
T ss_pred             ccc-ccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc-cccCCCCcccccccccc
Confidence            999 999999999886433     23344556788999998888888888888887776433 33468888999988888


Q ss_pred             HHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          274 LRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       274 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                      .+++++|++++++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus       158 ~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         158 PDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             HHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            8888888888888 788888888999988888888888888876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.8e-27  Score=218.73  Aligned_cols=206  Identities=20%  Similarity=0.225  Sum_probs=176.0

Q ss_pred             HHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCC
Q 008102          137 LDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKK  216 (577)
Q Consensus       137 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~  216 (577)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++.. ++............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA-DAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccc-cccccccccccccc
Confidence            58999999999998766788899999999999999999999999999999999999999999998 77777776666665


Q ss_pred             CccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCC
Q 008102          217 SLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGW  296 (577)
Q Consensus       217 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  296 (577)
                      ......+..+.++.+.+.........+.|.+.+.+..  ..+..|.|||+.++..+..++++.+++.+.+ ++..|..|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~--~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~  157 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN--AADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDE  157 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTT--CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhccccc--ccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccc
Confidence            5556667778889998888888888999988887764  2344788999999999999999999998887 678889999


Q ss_pred             chhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceecc
Q 008102          297 NVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIV  351 (577)
Q Consensus       297 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~l  351 (577)
                      ||||+|+.+|+.+++++|+++    |+++|.+|.+|+||||+|+++|+. .++++
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~~----gad~n~~d~~g~Tpl~~A~~~~~~-~iv~l  207 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLDN----FANREITDHMDRLPRDVASERLHH-DIVRL  207 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCH-HHHHH
T ss_pred             cccchhccccHHHHHHHHHHC----CCCCCCcCCCCCCHHHHHHHcCCH-HHHhh
Confidence            999999999999999999988    888999999999999999999853 44444

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=3.3e-26  Score=210.17  Aligned_cols=205  Identities=22%  Similarity=0.264  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHcCCchhhccccchHHHhhcc-CCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHH
Q 008102           88 ASVVTALIEIAKKQPKELESGVESTARQMLGM-TNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAA  166 (577)
Q Consensus        88 ~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  166 (577)
                      .|+|++|+++|++                ++. .|.+|.||||+||..|+.+++++|++.++.++ .++..+.++++.++
T Consensus         2 ~~~v~~Ll~~g~d----------------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n-~~~~~~~~~~~~~~   64 (209)
T d1ot8a_           2 AQVISDLLAQGAE----------------LNATMDKTGETSLHLAARFARADAAKRLLDAGADAN-SQDNTGRTPLHAAV   64 (209)
T ss_dssp             HHHHHHHHHHHHH----------------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHCCCC----------------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccc-cccccccccccccc
Confidence            3566666666655                232 35566666666666666666666666666554 45555666666666


Q ss_pred             HhCCHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHH
Q 008102          167 ERGFEKMLTEILENCP-SVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELL  245 (577)
Q Consensus       167 ~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  245 (577)
                      ..++............ ........+.++.+.+... ......+.|...+.+ .+..+..|.|||+.++..+..++++.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l  142 (209)
T d1ot8a_          65 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARL-AIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNIL  142 (209)
T ss_dssp             HTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT-TCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeee
Confidence            6666655555444432 2223344455666665555 556666666665554 455666666666666666666666666


Q ss_pred             hcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHH
Q 008102          246 LNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHL  314 (577)
Q Consensus       246 l~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L  314 (577)
                      ++.+.+++.  .+..|.||||.|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++|
T Consensus       143 ~~~~~~~~~--~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         143 LMHHANRDA--QDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccc--cccccccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            666665542  233566777777777777777777777766 566677777777777777777777654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=8e-28  Score=238.39  Aligned_cols=270  Identities=14%  Similarity=0.031  Sum_probs=186.9

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHH---HHhcCCCCCcC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKI---LIKEDPAVPYS  153 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~  153 (577)
                      +.++.+...+..++.+.+...+.......     ......+..++..|.||||+|+.+|+.+++++   |++.+++++ .
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~  121 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNA-----KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-V  121 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccch-----hhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-c
Confidence            33444444556677777777766543211     11334567788999999999999999887765   677887776 6


Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCC--CCCCCHHHHHHHcCCCHHHHHHHHhhCCCc--cccCCCCCCcH
Q 008102          154 TNGCGETPLYMAAERGFEKMLTEILENCPSVAHEG--PSGKTALHAAAVNINSIDVVKLLLDKKKSL--IGETDRYGWTP  229 (577)
Q Consensus       154 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~tp  229 (577)
                      .+..|.||||+|++.|+.+++++|+++|++++..+  .+|.||||+|+.+ |+.+++++|++.++..  .+..+.++.||
T Consensus       122 ~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~-g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~  200 (346)
T d2ajaa1         122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQAENYYAF  200 (346)
T ss_dssp             -CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHH-hhHHHHHHHHHcCCcccccccccCCCcch
Confidence            78889999999999999999999999999987755  4689999999999 9999999999988653  23344567788


Q ss_pred             HHHHHhcCcHHHHHHHhcCCCCccchhc-----CCCCCcchhHhhhcCcHHHHHHHHhhCCcc-ccccc-------CCCC
Q 008102          230 LHYASYFDRNIIAELLLNSDKSLAYIVD-----NDRKMTALHLAAGQGKLRVVEEIISYCPEC-CELVD-------GRGW  296 (577)
Q Consensus       230 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-~~~~d-------~~g~  296 (577)
                      ++.|+..|+.+++++|++.|++......     ...+.++++.+...+..+....+....++. ....+       ..+.
T Consensus       201 l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~  280 (346)
T d2ajaa1         201 RWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYML  280 (346)
T ss_dssp             HHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhh
Confidence            8999999999999999999876542111     112234445444444444433333332221 01111       1234


Q ss_pred             chhhHHHhcCChhHHHHHHhcccc-ccccccCCCCCCCcHHHHHHHhCCccceeccccC
Q 008102          297 NVLHFAMVSFDASDLKHLLNNYPI-VRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWN  354 (577)
Q Consensus       297 t~Lh~A~~~~~~~~v~~Ll~~~~~-~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~  354 (577)
                      ++++.|+..+..+++++|++.... .....+..+.+|+||||+|++.|+. .++++|++
T Consensus       281 ~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~-e~v~lLL~  338 (346)
T d2ajaa1         281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ-GACALLLS  338 (346)
T ss_dssp             HHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT-THHHHHTT
T ss_pred             hHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcH-HHHHHHhC
Confidence            678889999999999999986221 1223455667899999999999954 45555544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=1.3e-27  Score=236.85  Aligned_cols=261  Identities=16%  Similarity=0.071  Sum_probs=184.6

Q ss_pred             ccceeeeecCCccchHHHHHHHHHHhhC-------ccccccccCCCCcHHHHHHHhCCHHHHHH---HHHHHHcCCchhh
Q 008102           37 TILHVNIISRDRETIVSTEFVEQILEMC-------PSLLQSVNAKGDAPLHVAAKCGHASVVTA---LIEIAKKQPKELE  106 (577)
Q Consensus        37 t~Lh~A~~~g~~~~~~~~~~ll~~~~~~-------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~---Ll~~~~~~~~~~~  106 (577)
                      ..++.+...+.   .++.+.+.......       ...++.++..|.||||+||++|+.+++++   |++.+++      
T Consensus        48 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~------  118 (346)
T d2ajaa1          48 IHIFLPGTKNM---EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI------  118 (346)
T ss_dssp             HHHCCCCSSHH---HHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------
T ss_pred             HHHHHHhhccH---HHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc------
Confidence            44455555555   56666554432111       12345778899999999999999988776   5665444      


Q ss_pred             ccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcC-CCCCCChHHHHHHHhCCHHHHHHHHHhCCCCC
Q 008102          107 SGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYS-TNGCGETPLYMAAERGFEKMLTEILENCPSVA  185 (577)
Q Consensus       107 ~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  185 (577)
                                ++.+|.+|.||||+|++.|+.++|++|++.|++++.. .+..|.||||+|+..|+.+++++|++.|++..
T Consensus       119 ----------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~  188 (346)
T d2ajaa1         119 ----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA  188 (346)
T ss_dssp             ----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH
T ss_pred             ----------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccc
Confidence                      5678899999999999999999999999999887533 23468999999999999999999999987643


Q ss_pred             ---CCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCcc------ccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchh
Q 008102          186 ---HEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLI------GETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIV  256 (577)
Q Consensus       186 ---~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  256 (577)
                         ..+..+.||++.|+.+ |+.+++++|++.+.+..      ......+.++++.+...+..+....+.....+.....
T Consensus       189 ~~~~~~~~~~t~l~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  267 (346)
T d2ajaa1         189 TAMIQAENYYAFRWAAVGR-GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL  267 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCC
T ss_pred             ccccccCCCcchhhHHhhc-CHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhH
Confidence               3344566788888888 99999999998875421      1123334466666665555555444444332211000


Q ss_pred             -------cCCCCCcchhHhhhcCcHHHHHHHHhhCCcc----cccccCCCCchhhHHHhcCChhHHHHHHhc
Q 008102          257 -------DNDRKMTALHLAAGQGKLRVVEEIISYCPEC----CELVDGRGWNVLHFAMVSFDASDLKHLLNN  317 (577)
Q Consensus       257 -------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~  317 (577)
                             ....+.++++.|+..|..+++++|++.+...    ....+..|+||||+|++.|+.+++++|++.
T Consensus       268 ~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         268 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence                   0012357899999999999999999877542    223446789999999999999999999975

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.5e-25  Score=190.69  Aligned_cols=154  Identities=24%  Similarity=0.283  Sum_probs=116.2

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      +|||+||..|+.++|+.|++.|++                ++.+|.+|.||||+|+ .|+.+++++|+++++++. ..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d----------------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~   64 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN----------------VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDR   64 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC----------------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC----------------cCccCCcccccccccc-cccccccccccccccccc-cccc
Confidence            677888888888888888776655                3556777788887664 577778888887777654 5666


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.+|++.++..++.+.++.|++.+.+++..+..|.+|+|.|+.. ++.+++++|+++++...+.+|.+|.||||+|+..
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~  143 (156)
T d1ihba_          65 TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY  143 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHT
T ss_pred             cCccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            677788888888888888887777777777777777888877777 7777777777777755677777777777777777


Q ss_pred             CcHHHHHHHhcCC
Q 008102          237 DRNIIAELLLNSD  249 (577)
Q Consensus       237 g~~~~v~~Ll~~~  249 (577)
                      ++.+++++|+++|
T Consensus       144 ~~~~iv~~Ll~~G  156 (156)
T d1ihba_         144 GRNEVVSLMQANG  156 (156)
T ss_dssp             TCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHhcC
Confidence            7777777777764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.6e-24  Score=185.41  Aligned_cols=153  Identities=24%  Similarity=0.268  Sum_probs=89.0

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      +|||+|+..|+.++|+.|+++|++++ .+|..|.||||+|+ .|+.+++++|++++++++..+..+.++++.++.. +..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~-~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCcccccccccc-cccccccccccccccccccccccCcccccccccc-ccc
Confidence            56677777777777777776666653 55666666666554 5666666666666666666666666666666666 666


Q ss_pred             HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      +.++.++..+.. .+..|..|.+|+|+|+..++.++++.|+++++.... ..+..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~-~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG-HRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccc-ccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            666666665555 445555555555555555555555555554432211 1122444455554444444444444443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-23  Score=180.64  Aligned_cols=150  Identities=23%  Similarity=0.270  Sum_probs=119.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCC
Q 008102           76 DAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTN  155 (577)
Q Consensus        76 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~  155 (577)
                      .||||.||+.|+.++|++|++.|++.                + .|..|.||||+|+..++.++++.++....... ..+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~----------------~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~-~~~   64 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF----------------T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART   64 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC----------------C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc----------------c-cccCCCcccccccccccccccccccccccccc-ccc
Confidence            37888888888888888888876541                2 57778888888888888888888887766554 455


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHh
Q 008102          156 GCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASY  235 (577)
Q Consensus       156 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~  235 (577)
                      ..+.++++.++...+.++++++.+++.+.+.++..|.||||+|+.. ++.+++++|++.+.+ ++.+|.+|.||||+|+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~-g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~  142 (153)
T d1awcb_          65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGAD-VHTQSKFCKTAFDISID  142 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccccceeeecccccCCccccccccCchHHHhhhhc-chhheeeeccccccC-CcccCCCCCCHHHHHHH
Confidence            5677888888888888888888888888888888888888888888 888888888888776 67778888888888888


Q ss_pred             cCcHHHHHHH
Q 008102          236 FDRNIIAELL  245 (577)
Q Consensus       236 ~g~~~~v~~L  245 (577)
                      .|+.+++++|
T Consensus       143 ~g~~eiv~lL  152 (153)
T d1awcb_         143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHhC
Confidence            8888888765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=182.19  Aligned_cols=152  Identities=24%  Similarity=0.260  Sum_probs=123.5

Q ss_pred             cHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCC
Q 008102           77 APLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNG  156 (577)
Q Consensus        77 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~  156 (577)
                      +.||.||..|+.++|+.|++.+..               .++.+|..|+||||+|+ .|+.+++++|++++.+++ ..+.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~---------------~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~   66 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELV---------------HPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDT   66 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCC---------------CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC---------------CCCccCCCCCccccccc-cccccccccccccccccc-cccc
Confidence            458888888999999888875321               14567888889998876 478888888888887765 5666


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhc
Q 008102          157 CGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYF  236 (577)
Q Consensus       157 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~  236 (577)
                      .|.+|++.++..++.++++.+++++++++.++..|.||||+|+.. ++.+++++|+ .+.+ ++.+|.+|+||||+|+..
T Consensus        67 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~-~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~  143 (156)
T d1bd8a_          67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE-GHTAVVSFLA-AESD-LHRRDARGLTPLELALQR  143 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccccCCCCeeecccccc-cccccccccc-cccc-ccccCCCCCCHHHHHHHc
Confidence            788889999998888888888888888888888888899988888 8888888777 4555 577888888888888888


Q ss_pred             CcHHHHHHHhcC
Q 008102          237 DRNIIAELLLNS  248 (577)
Q Consensus       237 g~~~~v~~Ll~~  248 (577)
                      |+.+++++|+++
T Consensus       144 g~~~iv~~Ll~h  155 (156)
T d1bd8a_         144 GAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhh
Confidence            888888888865

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.4e-23  Score=178.43  Aligned_cols=150  Identities=24%  Similarity=0.319  Sum_probs=108.6

Q ss_pred             CcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCC
Q 008102          125 NTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS  204 (577)
Q Consensus       125 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  204 (577)
                      .||||.|++.|+.++|+.|+++|++..  .|..|.||||+|+..++.++++.++.........+..+.++++.++.. .+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            478888888888888888888877653  577788888888888888888887777766666666777777777777 77


Q ss_pred             HHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHH
Q 008102          205 IDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEI  280 (577)
Q Consensus       205 ~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L  280 (577)
                      .+.++++...+.+ .+..|.+|.||||+|+..|+.+++++|++.|++++  ..+..|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777777777665 56667777777777777777777777777776664  2233566666666666666666544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.8e-24  Score=210.23  Aligned_cols=198  Identities=16%  Similarity=0.055  Sum_probs=118.7

Q ss_pred             CCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCC-------HHHHHHHHhhCCCcc
Q 008102          147 DPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINS-------IDVVKLLLDKKKSLI  219 (577)
Q Consensus       147 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~-------~~~~~~Ll~~~~~~~  219 (577)
                      +.+++...|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||.|+.. ++       .++++++..    ..
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~~~~~~~~ll~~l~~----~~  170 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYP----CL  170 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGG----GG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc-ccchhhhhHHHHHHHHhh----hh
Confidence            4455544588899999999999999999999999999999999999999999976 43       234444332    25


Q ss_pred             ccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchh
Q 008102          220 GETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVL  299 (577)
Q Consensus       220 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  299 (577)
                      ...|..|+||||.++..+..                       ++...+++.....+++++.+.+..........+.+++
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  227 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGM-----------------------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP  227 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTS-----------------------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------
T ss_pred             hhcccccCCHHHHHHHHhCc-----------------------cccHHHHHHHHHHHHHHHHhcCCcchhcccccccchh
Confidence            66788899999988754321                       0001111111122344555555444444455555666


Q ss_pred             hHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHhCCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          300 HFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAALCRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       300 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      +.+...........+... ...+..+|.+|.+|+||||+|++.| ...+.++|+++|+|++.+|+.|+||+|+|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~~in~~D~~G~TpLh~A~~~g-~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         228 NDKNGERKDSILENLDLK-WIIANMLNAQDSNGDTCLNIAARLG-NISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             --------CHHHHHCSHH-HHHHHTTTCCCTTSCCHHHHHHHHC-CHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHhcchHHHHHHHhhH-HHHhcCccCCCCCCCCHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            655554444443332111 1123346777888888888888877 455666777778888888888888888774

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.5e-23  Score=179.55  Aligned_cols=152  Identities=23%  Similarity=0.326  Sum_probs=108.4

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      ++|+.|+..|+.++|+.|++.++......|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++.. ++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccc-ccc
Confidence            45888888888888888887655445567777888888776 4777888888888888777777788888888877 778


Q ss_pred             HHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhh
Q 008102          206 DVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISY  283 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  283 (577)
                      ++++.+++.+.+ ++.+|..|.||||+|+..|+.+++++|+ .++++.  ..+..|+||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-cccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            888888877766 5667777777777777777777777665 344442  2233566666666666666666666653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.9e-22  Score=164.96  Aligned_cols=121  Identities=20%  Similarity=0.182  Sum_probs=90.0

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCC
Q 008102           75 GDAPLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQHRSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        75 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      +.++||+|++.|+.++|++|++.|++                ++.+|.+|.||||.|+ .|+.+++++|+++|++++...
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad----------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN----------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC----------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc----------------cccccccccccccccc-ccccccccccccccccccccc
Confidence            45778888888888888888877655                3557777888887664 578888888888877766433


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHh
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLD  213 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~  213 (577)
                      +..+.||||+|++.|+.+++++|+++|++++.+|..|+||||+|+.. |+.+++++|+.
T Consensus        66 ~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~-g~~~~v~~Lls  123 (125)
T d1bi7b_          66 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRA  123 (125)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHc-CCHHHHHHHHh
Confidence            33344688888888888888888888888877788888888888877 77888777764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.7e-22  Score=196.08  Aligned_cols=182  Identities=23%  Similarity=0.215  Sum_probs=121.8

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCC-------HHHHHHHHHhCCCCCCCCCCCCC
Q 008102          121 NDEKNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGF-------EKMLTEILENCPSVAHEGPSGKT  193 (577)
Q Consensus       121 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-------~~~v~~Ll~~~~~~~~~~~~g~t  193 (577)
                      |.+|+||||+|+..|+.++|+.|+++|+++. .+|..|+||||.|+..++       .++++++.   .+....|..|+|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t  179 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRT  179 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-cCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCC
Confidence            8899999999999999999999999999886 788899999999998765       23444443   345667888999


Q ss_pred             HHHHHHHcC---CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhh
Q 008102          194 ALHAAAVNI---NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAG  270 (577)
Q Consensus       194 ~L~~A~~~~---~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~  270 (577)
                      |||.++...   +..+.+++.+                          ..++..+.+.+......... .+.++++.+..
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  232 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYL--------------------------DILMGWIVKKQNRPIQSGTN-EKESKPNDKNG  232 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHH--------------------------HHHHHHHHHGGGCCEEEC--------------
T ss_pred             HHHHHHHHhCccccHHHHHHHH--------------------------HHHHHHHHhcCCcchhcccc-cccchhHHHHh
Confidence            999988751   1222222211                          12233444433332221111 33344444333


Q ss_pred             cCcHHHHH-----HHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHH
Q 008102          271 QGKLRVVE-----EIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA  340 (577)
Q Consensus       271 ~g~~~iv~-----~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~  340 (577)
                      ......++     .++..   .++.+|..|+||||+|+++|+.+++++|+++    |+++|.+|++|.||||+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~---~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~----GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         233 ERKDSILENLDLKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDY----GADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             ---CHHHHHCSHHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT----TCCTTCCCTTSCCGGGGTC
T ss_pred             cchHHHHHHHhhHHHHhc---CccCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCCCHHHHcC
Confidence            33222222     22222   2567899999999999999999999999998    9999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.1e-22  Score=165.78  Aligned_cols=106  Identities=20%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             cchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHh
Q 008102          263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL  342 (577)
Q Consensus       263 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~  342 (577)
                      |||++|+++|+.+++++|++++++ ++.+|..|+||||+|+.+++.+++++++++    |.++|.+|.+|+||||+|+..
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~----g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK----GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHS----SCTTTCCSSSCSCHHHHHHTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccc----cceeeecccccccchhhhhhc
Confidence            455555555555555555555554 445555555555555555555555555555    555555555555555555555


Q ss_pred             CCccceeccccCcccchhhhhhCCCChHHHHh
Q 008102          343 CRDSFHRIVPWNVGGDYQAVNKQNISVKHITR  374 (577)
Q Consensus       343 ~~~~~~~~lL~~~g~d~~~~n~~G~t~l~~a~  374 (577)
                      + ...+.++|+++|+|++.+|++|+||+++|.
T Consensus        79 ~-~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 G-HVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             T-CCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             C-chhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            5 344444555555555555555555555553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.5e-21  Score=160.17  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=101.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCC-CHHHHHHHcC
Q 008102          124 KNTALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGK-TALHAAAVNI  202 (577)
Q Consensus       124 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~  202 (577)
                      +.++||+|++.|+.+++++|+++|.+++ .++..|.||+|.|+ .|+.+++++|+++|++++..+..+. ||||.|+.. 
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~-   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE-   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH-
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-ccccccccccccccccccccccccccccccccccc-
Confidence            4578999999999999999998887765 67778888888664 6888999999998888888887765 589999888 


Q ss_pred             CCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhc
Q 008102          203 NSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLN  247 (577)
Q Consensus       203 ~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  247 (577)
                      |+.+++++|++.+.+ ++.+|..|+||||+|++.|+.+++++|++
T Consensus        80 g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888999999888877 67888888888888888888888888875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.5e-21  Score=159.19  Aligned_cols=107  Identities=18%  Similarity=0.073  Sum_probs=96.1

Q ss_pred             CcHHHHHHhcCcHHHHHHHhcCCCCccchhcCCCCCcchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcC
Q 008102          227 WTPLHYASYFDRNIIAELLLNSDKSLAYIVDNDRKMTALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSF  306 (577)
Q Consensus       227 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~  306 (577)
                      .|||++|++.|+.+++++|+++|.+++  ..+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.++
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n--~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN--RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC--CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc--cccccccccccccccccccccccccccccce-eeecccccccchhhhhhcC
Confidence            378999999999999999999888875  3344789999999999999999999999988 7888999999999999999


Q ss_pred             ChhHHHHHHhccccccccccCCCCCCCcHHHHHH
Q 008102          307 DASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLA  340 (577)
Q Consensus       307 ~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~  340 (577)
                      +.+++++|+++    |+++|.+|.+|+||||+|.
T Consensus        80 ~~~~v~~Ll~~----Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          80 HVSCVKLLLSK----GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CCHHHHHHHTT----CCCSSSSSSSTCCCCCTCS
T ss_pred             chhhhhhhhcc----cccceeeCCCCCCHHHHHh
Confidence            99999999998    9999999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.7e-21  Score=159.58  Aligned_cols=120  Identities=21%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             cchhHhhhcCcHHHHHHHHhhCCcccccccCCCCchhhHHHhcCChhHHHHHHhccccccccccCCCCCCCcHHHHHHHh
Q 008102          263 TALHLAAGQGKLRVVEEIISYCPECCELVDGRGWNVLHFAMVSFDASDLKHLLNNYPIVRNLINDKDKEGNTPLHLLAAL  342 (577)
Q Consensus       263 tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~d~~G~TpLh~A~~~  342 (577)
                      ++|+.|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|++.    +.++|.+|.+|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~----g~~~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-cccccccccccccccccccccccccccccc----ccccccccccCcccccccchh
Confidence            567788888888888888888877 677888888888888888888888888887    788888888888888888888


Q ss_pred             CCccceeccccCcccchhhhhh-CCCChHHHHh---cCCcchHHHHHHHH
Q 008102          343 CRDSFHRIVPWNVGGDYQAVNK-QNISVKHITR---YGFPQLEQEIRELS  388 (577)
Q Consensus       343 ~~~~~~~~lL~~~g~d~~~~n~-~G~t~l~~a~---~~~~~~~~~l~~~~  388 (577)
                      | ...+.++|+++|+|++.++. .|+||++++.   .|+.+++++|....
T Consensus        78 g-~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          78 N-NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             T-CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             h-HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            8 45666777788888887764 5788887775   67788888887743

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.7e-20  Score=152.39  Aligned_cols=119  Identities=20%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPYSTNGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSI  205 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~  205 (577)
                      ++|+.|+..|+.++++.|+++|.+++ .+|..|.||||+|+..|+.+++++|++.|++++..|.+|+||||+|+.. |+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~-g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccccccccccccccccccCcccccccchh-hHH
Confidence            34555666666666666666555543 4555556666666666666666666665555555555555555555555 555


Q ss_pred             HHHHHHHhhCCCccccCC-CCCCcHHHHH--HhcCcHHHHHHHhc
Q 008102          206 DVVKLLLDKKKSLIGETD-RYGWTPLHYA--SYFDRNIIAELLLN  247 (577)
Q Consensus       206 ~~~~~Ll~~~~~~~~~~d-~~g~tpL~~A--~~~g~~~~v~~Ll~  247 (577)
                      +++++|++++.+. +..+ ..+.||++.+  +..|+.+++++|++
T Consensus        81 ~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            5555555555442 2222 2344443332  23344444444443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.8e-18  Score=148.47  Aligned_cols=131  Identities=21%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHcCCchhhccccchHHHhhccCCCCCCcHhHHHHHc---CCHHHHHHHHhcCCCCCcCC
Q 008102           78 PLHVAAKCGHASVVTALIEIAKKQPKELESGVESTARQMLGMTNDEKNTALHEAMQH---RSLDVVKILIKEDPAVPYST  154 (577)
Q Consensus        78 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~  154 (577)
                      .|+.|++.++...+..++..|.+....          ......+..|+||||+|++.   |+.+++++|+++|++++ .+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~----------~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~   77 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK----------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQ   77 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB----------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC----------CCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hh
Confidence            456788999999999888876553221          11234567899999999975   67899999999998875 78


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHcCCCHHHHHHHHhhCCCccc
Q 008102          155 NGCGETPLYMAAERGFEKMLTEILENCPSVAHEGPSGKTALHAAAVNINSIDVVKLLLDKKKSLIG  220 (577)
Q Consensus       155 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~Ll~~~~~~~~  220 (577)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.+....+
T Consensus        78 d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~-~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL-KHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHTTCCC
T ss_pred             hhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHc-CCHHHHHHHHHhCCCCCC
Confidence            88999999999999999999999999999999999999999999999 999999999987655333

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2e-18  Score=148.13  Aligned_cols=124  Identities=23%  Similarity=0.270  Sum_probs=107.7

Q ss_pred             cHhHHHHHcCCHHHHHHHHhcCCCCCc-----CCCCCCChHHHHHHHh---CCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 008102          126 TALHEAMQHRSLDVVKILIKEDPAVPY-----STNGCGETPLYMAAER---GFEKMLTEILENCPSVAHEGPSGKTALHA  197 (577)
Q Consensus       126 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~  197 (577)
                      ..|+.|++.++...+..++..|.++..     ..+..|+||||+|++.   |+.+++++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            356788999999999999988776542     2366789999999975   67899999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHhhCCCccccCCCCCCcHHHHHHhcCcHHHHHHHhcCCCC
Q 008102          198 AAVNINSIDVVKLLLDKKKSLIGETDRYGWTPLHYASYFDRNIIAELLLNSDKS  251 (577)
Q Consensus       198 A~~~~~~~~~~~~Ll~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  251 (577)
                      |+.. |+.+++++|++.+.+ ++.+|..|.||||+|++.|+.+++++|++.+..
T Consensus        88 A~~~-~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLT-DNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHT-TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccc-ccccccccccccCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999 999999999999888 688899999999999999999999999986544