Citrus Sinensis ID: 008119

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
ccccccccccHHHHcccccEEEEcccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHccccEEEEEEcccccEEEEEccccccccccEEEcccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHcccccHHHHHHccccEEEEcccccccccHHHHHHHHHHcccccccEEEEEEEEcccccccccccHHHHHHHccccccccccccccccccEEEEEccc
cccccccccccHHHHccccEEEEcccccEEEEccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHccccccccHHHHHcccccccccccccccccccccccEEccccccccEcccccccccccEEEcHcHEEccccccEEEEEEccccEEEccccccHHHcHHHHHHHHHHHHHHHccccHHHcccccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEEEccccccccEEEEccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHcccHcccccccccccEEEEcccccccHHHHHcHHHcccccccccccccccccccccccHHcccccccccccccccccHccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHccEEEEEccccccccHHHHHHHHHHHHcccccHHEEEEEHHHHHHHHHHHEcHHHHHHccccEEEEEEccccHHHHHHHHHHHcc
mdylktvvpsqliaergsnlvvinpgsaniriglaqhdtplniphciarrtsqvpkrnvVDQMLNSQVTTSQHVERERAYDVIASLMkipfldeevannsfprkmgrvdafnqqnsrkdvafswtnvyekepmpstalessssmnhgiikesmgqhrntdikELNSSERKFREFicgeealrvsptepycihrpirrghlnisqhypmQQVLEDLYAIWDWILTeklhiprserNLYSAILVlpesfdnrEIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVedgvalpntektlpfggedisrCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHsyedgmppgshktrlialnvppmglfypkllvpdvypppprswfndyedmledtwhtdfprrsdisdnfypginvglpmwesypvlttkpkkeekigLAEAVTSSILSTGRIDLQRKLFCSIQLIGgvaltgglipaveervlhaipsneaIDMVEVLGILDFGRDAWIHREdwirngihigsgrkykdsYFLQAQAMCYINS
mdylktvvpsqliaergsNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMlnsqvttsqhvereRAYDVIASLMKIPFLDEEVANNSFPRKMGrvdafnqqnsrkdVAFSWTNVYEKEPMPSTALESSSSMNHGIIKesmgqhrntdIKELNSSERKFREFIcgeealrvsptepyCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIrngihigsgrkYKDSYFLQAQAMCYINS
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*****TVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV***NVVD************VERERAYDVIASLMKIPFLDEEVA**********************VAFSWTNV*******************************************FREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYI**
******V*******ERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRT***************************************************************************************************************ELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDN************************EEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN*
MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKE***********SMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
*DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNS***KMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
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MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVLGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query577 2.2.26 [Sep-21-2011]
Q9LSW2596 Actin-related protein 9 O yes no 0.977 0.946 0.612 0.0
A2XQX0586 Actin-related protein 9 O N/A no 0.975 0.960 0.606 0.0
Q0JF03586 Actin-related protein 9 O yes no 0.975 0.960 0.606 0.0
P59679623 Actin-related protein 8 O yes no 0.857 0.794 0.246 5e-46
Q8R2S9624 Actin-related protein 8 O yes no 0.616 0.570 0.319 9e-45
D2I1E3624 Actin-related protein 8 O yes no 0.616 0.570 0.326 2e-44
Q1LZF2624 Actin-related protein 8 O yes no 0.616 0.570 0.324 2e-44
Q9H981624 Actin-related protein 8 O yes no 0.616 0.570 0.319 1e-43
B5X2S3632 Actin-related protein 8 O N/A no 0.613 0.560 0.316 4e-43
Q5RDA1624 Actin-related protein 8 O yes no 0.616 0.570 0.319 5e-43
>sp|Q9LSW2|ARP9_ARATH Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 Back     alignment and function desciption
 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/593 (61%), Positives = 450/593 (75%), Gaps = 29/593 (4%)

Query: 2   DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
           DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct: 14  DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query: 62  QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
           QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct: 74  QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query: 121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
            F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEA
Sbjct: 134 VFTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEA 192

Query: 181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
           L++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A+
Sbjct: 193 LKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAV 252

Query: 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
           +V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+C
Sbjct: 253 IVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVC 312

Query: 301 VEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 360
           VEDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+C
Sbjct: 313 VEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFC 372

Query: 361 EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFND 420
           EI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF D
Sbjct: 373 EIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQD 432

Query: 421 YEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480
           YE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSI
Sbjct: 433 YENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSI 482

Query: 481 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV--------- 531
           LS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+V         
Sbjct: 483 LSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQF 542

Query: 532 --------LGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 576
                   LGILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct: 543 VTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595

Arabidopsis thaliana (taxid: 3702)
>sp|A2XQX0|ARP9_ORYSI Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2 Back     alignment and function description
>sp|Q0JF03|ARP9_ORYSJ Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 Back     alignment and function description
>sp|P59679|ARP8_DANRE Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q8R2S9|ARP8_MOUSE Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 Back     alignment and function description
>sp|D2I1E3|ARP8_AILME Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 Back     alignment and function description
>sp|Q1LZF2|ARP8_BOVIN Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 Back     alignment and function description
>sp|Q9H981|ARP8_HUMAN Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 Back     alignment and function description
>sp|B5X2S3|ARP8_SALSA Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RDA1|ARP8_PONAB Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
255576846589 conserved hypothetical protein [Ricinus 0.991 0.971 0.792 0.0
296083596632 unnamed protein product [Vitis vinifera] 0.996 0.909 0.773 0.0
225433003602 PREDICTED: actin-related protein 9-like 0.994 0.953 0.773 0.0
449432582599 PREDICTED: actin-related protein 9-like 0.993 0.956 0.762 0.0
356533797591 PREDICTED: actin-related protein 9-like 0.994 0.971 0.723 0.0
356576460589 PREDICTED: actin-related protein 9-like 0.991 0.971 0.713 0.0
449526595512 PREDICTED: actin-related protein 9-like, 0.883 0.996 0.784 0.0
224107879480 actin related protein [Populus trichocar 0.831 1.0 0.780 0.0
297795073596 hypothetical protein ARALYDRAFT_494650 [ 0.977 0.946 0.622 0.0
42573559584 actin-related protein 9 [Arabidopsis tha 0.979 0.967 0.612 0.0
>gi|255576846|ref|XP_002529309.1| conserved hypothetical protein [Ricinus communis] gi|223531233|gb|EEF33078.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/594 (79%), Positives = 524/594 (88%), Gaps = 22/594 (3%)

Query: 1   MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVV 60
           MDYLKTVVPSQL+AERGSNLVVINPGSA++RIGLA  DTP N+PHCIAR +SQ PK NV 
Sbjct: 1   MDYLKTVVPSQLVAERGSNLVVINPGSASVRIGLAPQDTPFNVPHCIARYSSQSPKLNVR 60

Query: 61  DQMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDV 120
           DQMLNSQVTT+QH+ERE+AYD+IAS +KIPFLDEEVANNSFPRK+GRVD FN Q+ RKDV
Sbjct: 61  DQMLNSQVTTAQHMEREKAYDIIASYLKIPFLDEEVANNSFPRKIGRVDGFNPQSGRKDV 120

Query: 121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
           AF+WTNVYE++   S++L S    N G I  S+ +  +TD K    S  K+R FICGEEA
Sbjct: 121 AFTWTNVYEQDT--SSSLASERPTNEGQIGGSLEKLESTDAK--GPSTSKYRGFICGEEA 176

Query: 181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
           L++SPTEPYC+HRPIRRGHLNISQHYPMQQVLEDL+AIWDWIL EKLHIP+SERN+Y+AI
Sbjct: 177 LQISPTEPYCLHRPIRRGHLNISQHYPMQQVLEDLHAIWDWILIEKLHIPQSERNMYAAI 236

Query: 241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
           LVLPE+FDNREIKEM+SIVLRDLRF+SAVVHQEGLAAVFGNGLSTACV+N+GAQVTSVIC
Sbjct: 237 LVLPETFDNREIKEMISIVLRDLRFSSAVVHQEGLAAVFGNGLSTACVINIGAQVTSVIC 296

Query: 301 VEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 360
           +EDGVALPNTEKTLPFGGED+SRCLLWTQRHHQTWPQIRTDILTK +DLLMLNR++ESYC
Sbjct: 297 IEDGVALPNTEKTLPFGGEDLSRCLLWTQRHHQTWPQIRTDILTKPLDLLMLNRLRESYC 356

Query: 361 EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFND 420
           EIKEGE+DAVAVV SYEDGMP GSHKTRL ALNVPPMGLFYP LLVPDVYPPPPRSWF+D
Sbjct: 357 EIKEGEVDAVAVVQSYEDGMPAGSHKTRLNALNVPPMGLFYPMLLVPDVYPPPPRSWFHD 416

Query: 421 YEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480
           YEDMLEDTWH ++PRR D+SD  +P  + GLPMW+SYPV  +KPKKEEK+GLAEA+TSSI
Sbjct: 417 YEDMLEDTWHVEYPRRPDMSDGLFPAFS-GLPMWDSYPVFASKPKKEEKVGLAEAITSSI 475

Query: 481 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEV--------- 531
           LSTGRIDL+RKLFCSIQLIGGVALT GLIP VE+RVLHAIPSNE ID VEV         
Sbjct: 476 LSTGRIDLKRKLFCSIQLIGGVALTPGLIPVVEDRVLHAIPSNEVIDTVEVLQSRINPTF 535

Query: 532 --------LGILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYINS 577
                   LG+LDFGRDAWIHREDWIRNGIHIGSGRKYKDSY+LQAQAMCYINS
Sbjct: 536 VTWKGGAILGVLDFGRDAWIHREDWIRNGIHIGSGRKYKDSYYLQAQAMCYINS 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296083596|emb|CBI23585.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225433003|ref|XP_002280839.1| PREDICTED: actin-related protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449432582|ref|XP_004134078.1| PREDICTED: actin-related protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356533797|ref|XP_003535445.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356576460|ref|XP_003556349.1| PREDICTED: actin-related protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449526595|ref|XP_004170299.1| PREDICTED: actin-related protein 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107879|ref|XP_002314638.1| actin related protein [Populus trichocarpa] gi|222863678|gb|EEF00809.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297795073|ref|XP_002865421.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] gi|297311256|gb|EFH41680.1| hypothetical protein ARALYDRAFT_494650 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42573559|ref|NP_974876.1| actin-related protein 9 [Arabidopsis thaliana] gi|332007588|gb|AED94971.1| actin-related protein 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
TAIR|locus:2176516596 ARP9 "actin-related protein 9" 0.977 0.946 0.612 6.5e-193
UNIPROTKB|F1NXV7621 ACTR8 "Uncharacterized protein 0.447 0.415 0.363 2e-58
UNIPROTKB|F1SH80624 ACTR8 "Uncharacterized protein 0.391 0.362 0.394 7e-55
MGI|MGI:1860775624 Actr8 "ARP8 actin-related prot 0.407 0.376 0.388 1.8e-53
UNIPROTKB|Q1LZF2624 ACTR8 "Actin-related protein 8 0.391 0.362 0.389 1.9e-52
UNIPROTKB|Q9H981624 ACTR8 "Actin-related protein 8 0.391 0.362 0.381 2.9e-51
ZFIN|ZDB-GENE-030131-5065623 actr8 "ARP8 actin-related prot 0.414 0.383 0.354 1.5e-45
POMBASE|SPAC664.02c662 arp8 "actin-like protein, Ino8 0.587 0.512 0.297 4e-37
UNIPROTKB|Q0IEG8562 Arp8 "Actin-related protein 8" 0.395 0.405 0.330 1.1e-36
FB|FBgn0030877607 Arp8 "Actin-related protein 8" 0.299 0.285 0.323 2.1e-30
TAIR|locus:2176516 ARP9 "actin-related protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1869 (663.0 bits), Expect = 6.5e-193, P = 6.5e-193
 Identities = 363/593 (61%), Positives = 450/593 (75%)

Query:     2 DYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVD 61
             DYLKTV P+Q+++ERG+NLVVIN GSAN+R+GLA  + P N+P+CIAR  +Q  K  VVD
Sbjct:    14 DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPTVVD 73

Query:    62 QMLNSQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNS-RKDV 120
             QMLN++VTT+QHV+RERAY+  ASL+KI FLDE  ++ S  RKMGR+D +NQ ++ +KD 
Sbjct:    74 QMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASRKMGRIDGYNQASTIKKDS 133

Query:   121 AFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEA 180
              F+WT+VYE E + S A  + +S + G    S      TD K+ + S+RK+R+ I GEEA
Sbjct:   134 VFTWTDVYEDEKI-SLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMIFGEEA 192

Query:   181 LRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAI 240
             L++SP EPYC++ PIRRGH N+S HY  Q+V EDL AI DWIL EKLHI   ER  + A+
Sbjct:   193 LKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERFSFHAV 252

Query:   241 LVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVIC 300
             +V+PE+FD REIKEML+IVL +L F SAVVHQEGL+AVFGNGL+TAC+VN+GAQ ++V+C
Sbjct:   253 IVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQTSTVVC 312

Query:   301 VEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYC 360
             VEDGV+LPNTEK LPFGGEDI RCLLW QRH+Q WPQI TD+L K +D+LMLN++KES+C
Sbjct:   313 VEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQLKESFC 372

Query:   361 EIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFND 420
             EI+ GE++ VA VHSYE+GMP   HKT L +LNVPPMGLFYP LLVP+++P PPR WF D
Sbjct:   373 EIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPRQWFQD 432

Query:   421 YEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSI 480
             YE+MLEDTW+ DF            G N+GLPMW+S+    +KPKKEEKIGLAEA+TSSI
Sbjct:   433 YENMLEDTWNMDFGG----------GGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSI 482

Query:   481 LSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSNEAIDMVEVL-------- 532
             LS GRIDL+RKLF SIQLIGG  LT GL+ AVEERVLHAIP  EAID V+VL        
Sbjct:   483 LSAGRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQF 542

Query:   533 ---------GILDFGRDAWIHREDWIRNGIHIGSGRKYKDSYFLQAQAMCYIN 576
                      GILDFGR+AWI R  W+ NG++ G  +KYKDSY LQ QAM +IN
Sbjct:   543 VTWKGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595
GO:0005737 "cytoplasm" evidence=ISM
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
UNIPROTKB|F1NXV7 ACTR8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SH80 ACTR8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1860775 Actr8 "ARP8 actin-related protein 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZF2 ACTR8 "Actin-related protein 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H981 ACTR8 "Actin-related protein 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5065 actr8 "ARP8 actin-related protein 8 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPAC664.02c arp8 "actin-like protein, Ino80 complex subunit Arp8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IEG8 Arp8 "Actin-related protein 8" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
FB|FBgn0030877 Arp8 "Actin-related protein 8" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LSW2ARP9_ARATHNo assigned EC number0.61210.97740.9463yesno
Q0JF03ARP9_ORYSJNo assigned EC number0.60660.97570.9607yesno
A2XQX0ARP9_ORYSINo assigned EC number0.60660.97570.9607N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020181001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (602 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018458001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (725 aa)
      • 0.436

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
pfam00022367 pfam00022, Actin, Actin 2e-16
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 1e-12
smart00268373 smart00268, ACTIN, Actin 2e-12
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 6e-06
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 53/245 (21%), Positives = 92/245 (37%), Gaps = 36/245 (14%)

Query: 173 EFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPRS 232
           ++  G+EAL   P     +  PI  G +            + +  IW+    E+L +   
Sbjct: 44  KYYVGDEALSKRPG--LEVRYPIEDGIVE---------NWDAMEKIWEHTFFEELRVDPE 92

Query: 233 ERNLYSAILVLPESFDN-REIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 290
           E  L     +L E   N    +E    I+       +  + ++ + + + +G +T  VV+
Sbjct: 93  EHPL-----LLTEPPLNPPANREKATEIMFETFGVPALYLAKQAVLSAYASGRTTGLVVD 147

Query: 291 MGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL--LWTQRHHQTWPQIRTDILTKAMD 348
            GA VTSV+ V +G  L    +     G+D++  L  L +          RT       +
Sbjct: 148 SGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYLRKLLSS---------RTYSFNTYAE 198

Query: 349 LLMLNRIKESYCEIKEG-----EIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403
             ++  IKES C + +         +     SYE  +P G            P  LF P 
Sbjct: 199 EEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYE--LPDGYVIILGNERFRVPEILFNPS 256

Query: 404 LLVPD 408
           L+  +
Sbjct: 257 LIGSE 261

Length = 367
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 577
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681 645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 99.97
PRK13927334 rod shape-determining protein MreB; Provisional 99.97
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.94
PRK13929335 rod-share determining protein MreBH; Provisional 99.93
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.9
PRK13928336 rod shape-determining protein Mbl; Provisional 99.89
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.71
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.4
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.18
PRK09472420 ftsA cell division protein FtsA; Reviewed 98.89
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 98.84
PTZ00400 663 DnaK-type molecular chaperone; Provisional 98.62
CHL00094 621 dnaK heat shock protein 70 98.61
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.6
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 98.59
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 98.56
PLN03184 673 chloroplast Hsp70; Provisional 98.55
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 98.54
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.51
PRK13411 653 molecular chaperone DnaK; Provisional 98.49
PRK11678450 putative chaperone; Provisional 98.46
PRK13410 668 molecular chaperone DnaK; Provisional 98.43
PRK05183 616 hscA chaperone protein HscA; Provisional 98.42
PRK01433 595 hscA chaperone protein HscA; Provisional 98.41
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.41
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.18
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 97.99
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 97.6
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 97.54
PRK13917344 plasmid segregation protein ParM; Provisional 97.37
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 97.02
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.15
PRK10719475 eutA reactivating factor for ethanolamine ammonia 95.94
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 95.63
COG4820277 EutJ Ethanolamine utilization protein, possible ch 95.34
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 95.25
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 93.82
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 92.14
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 90.41
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 88.81
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 87.88
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 86.13
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 86.07
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 86.06
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 82.21
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3e-82  Score=654.64  Aligned_cols=520  Identities=39%  Similarity=0.636  Sum_probs=382.3

Q ss_pred             CCcccccCchhhHhhcCCCEEEEcCCCceeeeecCCCCCCCccceeeEEecCCC-Cccccccccccccc----cchhhhh
Q 008119            1 MDYLKTVVPSQLIAERGSNLVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQV-PKRNVVDQMLNSQV----TTSQHVE   75 (577)
Q Consensus         1 ~~~~~~~~~~~~~~~~g~~~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~-~~~~~~~~~~~~~~----~~~~~~~   75 (577)
                      .+|++.+-++|...+++.|+||||+||+|+|||+|+|.+|.++||||||+.++. -++......+.+..    +.....+
T Consensus        16 ~p~~~g~ee~q~~e~ed~k~ivih~gsqnlrig~a~d~np~tv~~~iar~~rap~sdr~~~~p~l~p~~~e~~n~~~~~e   95 (618)
T KOG0797|consen   16 QPYLKGVEETQILEEEDAKLIVIHLGSQNLRIGLAMDENPFTVPNCIARYIRAPVSDRMLNTPVLTPQHVEERNYNSAAE   95 (618)
T ss_pred             CCcccCCCccccccccCCCeeEecCCcchhhccccccCCCcccccceeecccCchhhhcccCcCCCccccccccccchhh
Confidence            479999999999999999999999999999999999999999999999998761 11112222222221    1111122


Q ss_pred             HHHHHHHHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCccccccccccCCcccccCC
Q 008119           76 RERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQ  155 (577)
Q Consensus        76 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~  155 (577)
                      +++......+.++..          +-++                        +.|+.-.+.+.++++||+-.++|.+|.
T Consensus        96 f~~~lll~~s~lss~----------~~~k------------------------k~ri~v~~~~q~lkn~n~~S~aetvP~  141 (618)
T KOG0797|consen   96 FLKILLLDESSLSSS----------ASRK------------------------KGRIDVYNQAQTLKNDNVASPAETVPD  141 (618)
T ss_pred             hhHHHHHhhhhhhhH----------HHhh------------------------cCcccccCchHHhhcccccCccccCCC
Confidence            222222112222211          1112                        233334467788889999999999984


Q ss_pred             CC-Ccccccccccc------ccCCceEEccccccCCCCCCceEecceeCCeeeec-CCCCcccCHHHHHHHHHHHHhhhc
Q 008119          156 HR-NTDIKELNSSE------RKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS-QHYPMQQVLEDLYAIWDWILTEKL  227 (577)
Q Consensus       156 ~~-~~~~~~~~~~~------~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~-~~~s~~~~~~d~e~i~~~~~~~~L  227 (577)
                      .+ +.-+.+|...+      ....+..+|++|..+   .+|.|++||++|.||++ +|+|+|+.++|+++||+|++.+.|
T Consensus       142 ps~~~a~~~wld~e~~~hv~v~c~kr~~~ee~n~i---~~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L  218 (618)
T KOG0797|consen  142 PSASEAVPDWLDSEDTSHVKVKCRKRIFGEEANKI---SPYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKL  218 (618)
T ss_pred             CCCCcCCCCccccccchHHHHHHHHHHhhhhhhcC---CcceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence            33 22222222111      233455677777776   48999999999999997 777999999999999999999999


Q ss_pred             CCCCCCCCccceEEecCCCCChHHHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeee
Q 008119          228 HIPRSERNLYSAILVLPESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVAL  307 (577)
Q Consensus       228 ~i~~~~~~~~~~vlvi~~~~~~~~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi  307 (577)
                      +|+++...+|+.|||+|+.|.++++++++.+||.+++|.++.++|+++||+||+|.+++||||||+++|+|+||+||.++
T Consensus       219 ~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~  298 (618)
T KOG0797|consen  219 HIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSL  298 (618)
T ss_pred             CCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccc-hhccccCCCCCCCce
Q 008119          308 PNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVA-VVHSYEDGMPPGSHK  386 (577)
Q Consensus       308 ~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~-~~~~~~~~~p~~~~k  386 (577)
                      ++++++|+|||+|||++|.++|++. .|| |+++++.+.+||.++++|||++|+++.+++.++. .|..+++..|  +.|
T Consensus       299 ~ntri~L~YGGdDitr~f~~ll~rs-~FP-y~d~~v~~~~d~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~--~~k  374 (618)
T KOG0797|consen  299 PNTRIILPYGGDDITRCFLWLLRRS-GFP-YQDCDVLAPIDWLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPP--TLK  374 (618)
T ss_pred             cCceEEeccCCchHHHHHHHHHHhc-CCC-cccccccccccHHHHHHHHHHhccccHhhhhhhhhhhhccCCCCc--cee
Confidence            9999999999999999999999875 466 5889998899999999999999999987665432 2333343334  566


Q ss_pred             eEee---eeccCCCcccCCcccCCCC--------CCCCCCCCCCCcccccCCCcccccC-C-----------------Cc
Q 008119          387 TRLI---ALNVPPMGLFYPKLLVPDV--------YPPPPRSWFNDYEDMLEDTWHTDFP-R-----------------RS  437 (577)
Q Consensus       387 ~~~~---~~~~aP~~lF~p~i~~~e~--------~~~p~~~~~~~~ed~~~d~~~~~~~-e-----------------r~  437 (577)
                      |+|+   ++++|||+||+|.+|..+.        +.+|.+-++.|++-++.+++....+ +                 |-
T Consensus       375 ytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~  454 (618)
T KOG0797|consen  375 YTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRD  454 (618)
T ss_pred             eeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccccccccccccccccccccccccc
Confidence            7765   5789999999999997665        2333333333333222222222111 0                 00


Q ss_pred             CCCCCCCCCcCCCCC------CCCCCCccC-----------CCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEec
Q 008119          438 DISDNFYPGINVGLP------MWESYPVLT-----------TKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIG  500 (577)
Q Consensus       438 ~~~E~lfp~~~~~~~------~~~~~~~~~-----------~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvG  500 (577)
                      ..+|..-.+..|.++      ...++....           ...+..-..+|+++|+.||..|...|.+++||++|+++|
T Consensus       455 ~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vg  534 (618)
T KOG0797|consen  455 QLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVG  534 (618)
T ss_pred             cccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhc
Confidence            011111000000000      000000000           000111234788999999999988999999999999999


Q ss_pred             CCcCCCChHHHHHHHHHhhCCC-CCcceEEE-------------------EeeecCCCCceeEeHHHHhhcCCCceeccc
Q 008119          501 GVALTGGLIPAVEERVLHAIPS-NEAIDMVE-------------------VLGILDFGRDAWIHREDWIRNGIHIGSGRK  560 (577)
Q Consensus       501 G~S~ipG~~~RLe~eL~~~~P~-~~~v~~v~-------------------vlasL~sf~~~wItr~EYeE~G~~il~rk~  560 (577)
                      |+.++|||.+.||+++...+|+ +..+..|+                   |||.|++.+++||++.||+.+|.+++..||
T Consensus       535 ga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~  614 (618)
T KOG0797|consen  535 GAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKK  614 (618)
T ss_pred             ccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhcc
Confidence            9999999999999999988877 22233332                   389999999999999999999999999999


Q ss_pred             c
Q 008119          561 Y  561 (577)
Q Consensus       561 ~  561 (577)
                      +
T Consensus       615 ~  615 (618)
T KOG0797|consen  615 Y  615 (618)
T ss_pred             c
Confidence            7

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
4fo0_A593 Human Actin-Related Protein Arp8 In Its Atp-Bound S 7e-45
4am6_A655 C-terminal Domain Of Actin-related Protein Arp8 Fro 1e-28
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-07
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-07
>pdb|4FO0|A Chain A, Human Actin-Related Protein Arp8 In Its Atp-Bound State Length = 593 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (451), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 198/403 (49%), Gaps = 48/403 (11%)
Query: 7   VVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLN 65
           +VP  L  +  SN ++VI+PGS  +RIG A    P +IPH IARR  Q  +    D  L 
Sbjct: 3   LVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLL 62
Query: 66  SQVTTSQHVERERAYDVIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWT 125
            +         +R          +  +D+ +    + +KM         N  + +  S  
Sbjct: 63  REGLNKPESNEQRQNG-------LKMVDQAI----WSKKMS--------NGTRRIPVS-- 101
Query: 126 NVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDIKELNSSERKFREFICGEEALRVSP 185
                   P  A   +  M   I+    G       K  N+S     E++ GEEAL V+P
Sbjct: 102 --------PEQARSYNKQMRPAILDHCSGN------KWTNTSHHP--EYLVGEEALYVNP 145
Query: 186 TEPYCIHRPIRRGHLNI--SQHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSAILVL 243
            + Y IH PIRRG LNI       +  VL D+  IW   + + L IP  +   Y  IL++
Sbjct: 146 LDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLI 205
Query: 244 PESFDNREIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVED 303
           P+ ++ + +KE+++++L  + F+  VVHQE + A +G+GLS+ C+V++G Q TSV CVED
Sbjct: 206 PDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVED 265
Query: 304 GVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIK 363
           GV+  NT   L +GG D+SRC  W  +    +P  R   LT  MD L+L  +KE++C + 
Sbjct: 266 GVSHRNTRLCLAYGGSDVSRCFYWLMQ-RAGFP-YRECQLTNKMDCLLLQHLKETFCHLD 323
Query: 364 EGEIDAVAVVHSYEDGMPPGS---HKTRLIALNV-PPMGLFYP 402
           + +I  +   H ++   P      ++ RL    +  PM LFYP
Sbjct: 324 Q-DISGLQ-DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYP 364
>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S. Cerevisiae Length = 655 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 2e-15
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 5e-11
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 1e-09
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-09
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 69/449 (15%), Positives = 136/449 (30%), Gaps = 99/449 (22%)

Query: 172 REFICGEEALRVSPTEPYCIHRPIRRGHLNISQHYPMQQVLEDLYAIWDWILTEKLHIPR 231
           ++    +      P + Y +   I  G         +    +     W W L  +L++  
Sbjct: 63  KKIFSEQSIG--IPRKDYELKPIIENG---------LVIDWDTAQEQWQWALQNELYLNS 111

Query: 232 SERNLYSAILVLPESFDNREIKE-MLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVN 290
           +        L+    +++ E ++  L ++L  ++F +  +        F  G     VV+
Sbjct: 112 NS---GIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVD 168

Query: 291 MGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCL--LWTQR----------------HH 332
           +G    SV  + DG+ L  + +     G+ I+  +      +                  
Sbjct: 169 IGHDTCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKK 228

Query: 333 QTWPQIRTDILTKAMDLLMLNRIKESYCEI-----KEGEIDAV--AVVHSYEDGMPPGSH 385
               ++   +   A +       KE+ C I      E     +      S E   P    
Sbjct: 229 TFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIE--SPWNEE 286

Query: 386 KT-----RLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDIS 440
                  R          LF PK          P +W      +++   +   P +    
Sbjct: 287 IVFDNETRYGF----AEELFLPK------EDDIPANWPRSNSGVVKTWRNDYVPLKRTKP 336

Query: 441 DNFYPGINVGLPMWESYPVLTTKPK--------------------------KEEKIGLAE 474
                      P  E      +K                              E IGLA+
Sbjct: 337 SGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLAD 396

Query: 475 AVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG-----------LIPAVEERVLHAIPSN 523
            V SSI+S+  +DL+  L  ++ L GG +   G           ++P+++ R+L    + 
Sbjct: 397 LVYSSIMSS-DVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPSLKFRILTTGHTI 455

Query: 524 EAIDMV----EVLGILDFGRDAWIHREDW 548
           E          +L  L      W+ ++++
Sbjct: 456 ERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.93
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.61
2v7y_A509 Chaperone protein DNAK; HSP70, heat shock protein, 99.49
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.42
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.37
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.29
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.08
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 98.89
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 98.84
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 98.8
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 98.79
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 98.76
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.54
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.54
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.02
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 97.99
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 97.31
3js6_A355 Uncharacterized PARM protein; partition, segregati 97.25
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 96.87
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 88.08
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 81.92
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 81.82
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.4e-89  Score=768.09  Aligned_cols=512  Identities=29%  Similarity=0.492  Sum_probs=363.7

Q ss_pred             cccCchhhHhhcCCC-EEEEcCCCceeeeecCCCCCCCccceeeEEecCCCCccccccccccccc--cchhhhhHHHHHH
Q 008119            5 KTVVPSQLIAERGSN-LVVINPGSANIRIGLAQHDTPLNIPHCIARRTSQVPKRNVVDQMLNSQV--TTSQHVERERAYD   81 (577)
Q Consensus         5 ~~~~~~~~~~~~g~~-~iVihpGS~~lriG~asd~~P~~ip~~iAr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   81 (577)
                      ++|+|+++.++++++ ||||||||++||||||+|..|++||||||||+++.......+..+....  ..+...+++....
T Consensus         1 ~p~~~~~~~~~~~~~~iIVIdpGS~~~riG~A~d~~P~~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (593)
T 4fo0_A            1 GPLVPESLQEQIQSNFIIVIHPGSTTLRIGRATDTLPASIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLK   80 (593)
T ss_dssp             CCCCCGGGTTTSGGGGEEEEECCSSEEEEEETTCSSCEEEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHH
T ss_pred             CCCCCCccccccCCCCEEEEeCCCCCeEeeecCCCCCCeeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHH
Confidence            479999999988765 9999999999999999999999999999999876443333333222111  1122223333333


Q ss_pred             HHHhhcCCCcchHhhhcCCCCcccccccccccccccccccccccccccCCCCCCCccccccccccCCcccccCCCCCccc
Q 008119           82 VIASLMKIPFLDEEVANNSFPRKMGRVDAFNQQNSRKDVAFSWTNVYEKEPMPSTALESSSSMNHGIIKESMGQHRNTDI  161 (577)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~n~~~~~e~~~~~~~~~~  161 (577)
                      .+.+.++..                                  +..+++|+. ++++|++++||++.+||.+++++++.+
T Consensus        81 ~~~~~~~~~----------------------------------~~~~~~r~~-~~s~~~~~~~n~~~~p~~i~~~~~~~~  125 (593)
T 4fo0_A           81 MVDQAIWSK----------------------------------KMSNGTRRI-PVSPEQARSYNKQMRPAILDHCSGNKW  125 (593)
T ss_dssp             HHHHHHHHS----------------------------------CCTTSCCCC-CCCHHHHHHHHTTCCCEEEESSCSCCC
T ss_pred             HHHHHHHHH----------------------------------hhhcccccC-CCcHHHhhhhhccCCCcccCCCCcccc
Confidence            222222110                                  111233334 599999999999999999987755543


Q ss_pred             cccccccccCCceEEccccccCCCCCCceEecceeCCeeeec--CCCCcccCHHHHHHHHHHHHhhhcCCCCCCCCccce
Q 008119          162 KELNSSERKFREFICGEEALRVSPTEPYCIHRPIRRGHLNIS--QHYPMQQVLEDLYAIWDWILTEKLHIPRSERNLYSA  239 (577)
Q Consensus       162 ~~~~~~~~~~~~~~vG~eAl~~~~~~~~~l~~Pi~~G~i~~~--~~~s~~~~~~d~e~i~~~~~~~~L~i~~~~~~~~~~  239 (577)
                      .+    ....+++|||+||+++++++.|.|+|||+||.||++  +|.|++.+|+|||+||+|+|+++|+|++++.+.| +
T Consensus       126 ~~----~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~-p  200 (593)
T 4fo0_A          126 TN----TSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAVLADIEVIWSHAIQKYLEIPLKDLKYY-R  200 (593)
T ss_dssp             CC----CTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHHHHHHHHHHHHHHHHTSCCCGGGGGGC-E
T ss_pred             cc----ccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcCHHHHHHHHHHHHHHhcCCCchhccCC-c
Confidence            22    234578999999999988889999999999999997  4559999999999999999999999999886655 5


Q ss_pred             EEecCCCCChH-HHHHHHHHHHhhcCCceEEecchhhHHhhhcCCcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccch
Q 008119          240 ILVLPESFDNR-EIKEMLSIVLRDLRFASAVVHQEGLAAVFGNGLSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGG  318 (577)
Q Consensus       240 vlvi~~~~~~~-~~r~l~ellfE~~~~~~v~~~~~~vla~f~~G~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG  318 (577)
                      ||+++++++++ ++++|+++|||+|+||+++++++++||+||+|++||||||||++.|+|+||+||+++.++++++++||
T Consensus       201 vlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG  280 (593)
T 4fo0_A          201 CILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCCVEDGVSHRNTRLCLAYGG  280 (593)
T ss_dssp             EEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEECSSCEEEEEEESSCBCGGGCEEESCCH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEeCCCceeeeeeECCEEehhheEEecccH
Confidence            66666666555 44559999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccccCCcccccchhccccCCCCCC-CceeEee---eecc
Q 008119          319 EDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPG-SHKTRLI---ALNV  394 (577)
Q Consensus       319 ~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v~~~~~~~~~~~~~~~~~~p~~-~~k~~~~---~~~~  394 (577)
                      ++||++|.++|+.++ +| +.++++.+..|++++++|||++|||+.+......  ..+....|.+ +.++.++   +.+.
T Consensus       281 ~~lt~~L~~lL~~~~-~~-~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~--~~~~~~~p~~~~~~~~~~~~~E~~~  356 (593)
T 4fo0_A          281 SDVSRCFYWLMQRAG-FP-YRECQLTNKMDCLLLQHLKETFCHLDQDISGLQD--HEFQIRHPDSPALLYQFRLGDEKLQ  356 (593)
T ss_dssp             HHHHHHHHHHHHHTT-CS-CTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEE--EEEEECCTTSCEEEEEEEECTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CC-ccccccccchhHHHHHHHHHHhcccccchHHhhh--hhhhcccCCCCceeeEEeccchhhc
Confidence            999999999998775 33 5667777889999999999999999875432211  1111123433 3444443   4678


Q ss_pred             CCCcccCCcccCCCCCCCC---CCCCCCCc---------------------------ccccCCCcccccC-CCcCCCCCC
Q 008119          395 PPMGLFYPKLLVPDVYPPP---PRSWFNDY---------------------------EDMLEDTWHTDFP-RRSDISDNF  443 (577)
Q Consensus       395 aP~~lF~p~i~~~e~~~~p---~~~~~~~~---------------------------ed~~~d~~~~~~~-er~~~~E~l  443 (577)
                      +|+++|+|.++..+.....   .+. ..+.                           ....+++....++ +|+.++|.+
T Consensus       357 ~p~~lf~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~e~~~~pe~l  435 (593)
T 4fo0_A          357 APMALFYPATFGIVGQKMTTLQHRS-QGDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERL  435 (593)
T ss_dssp             HHHTTTSGGGGCCCSSCCEEECC---------------------------------------------------------
T ss_pred             CchhhcChhhhcccccccchhhhhc-ccCcccchhhhhhhhcccchhhhhhcccccccccCCCCcccccccccccCchhc
Confidence            9999999998864321100   000 0000                           0123345555565 799999999


Q ss_pred             CCC-cCCCCCC-------CCCCCcc--------CCCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCC
Q 008119          444 YPG-INVGLPM-------WESYPVL--------TTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGG  507 (577)
Q Consensus       444 fp~-~~~~~~~-------~~~~~~~--------~~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG  507 (577)
                      |.+ ...+...       .......        .......+..||+++|++||.+|+..|+|++||+|||||||+|+|||
T Consensus       436 f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pG  515 (593)
T 4fo0_A          436 HSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHK  515 (593)
T ss_dssp             -----------------------------------CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBT
T ss_pred             cCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhc
Confidence            843 2111100       0000000        00011234579999999999999436999999999999999999999


Q ss_pred             hHHHHHHHHHhhCCCCC-----cceEEE----------------EeeecCCCCceeEeHHHHhhcCCCceecccc
Q 008119          508 LIPAVEERVLHAIPSNE-----AIDMVE----------------VLGILDFGRDAWIHREDWIRNGIHIGSGRKY  561 (577)
Q Consensus       508 ~~~RLe~eL~~~~P~~~-----~v~~v~----------------vlasL~sf~~~wItr~EYeE~G~~il~rk~~  561 (577)
                      |.+||++||..++|+.+     ++++++                +||+|++|+++||||+||+|+|.+||+|||.
T Consensus       516 f~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~  590 (593)
T 4fo0_A          516 AQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA  590 (593)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred             HHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence            99999999999998653     345442                2899999999999999999999999999994
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 577
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 5e-12
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 5e-10
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 9e-07
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (154), Expect = 5e-12
 Identities = 46/285 (16%), Positives = 90/285 (31%), Gaps = 76/285 (26%)

Query: 284 STACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDIL 343
           +T  V++ G  VT  + + +G ALP+    L   G D++  L+            R    
Sbjct: 2   TTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTE-------RGYSF 54

Query: 344 TKAMDLLMLNRIKESYCEIKEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPK 403
               +  ++  IKE  C +             +E+ M   +  + L      P G     
Sbjct: 55  VTTAEREIVRDIKEKLCYV----------ALDFENEMATAASSSSLEKSYELPDG----- 99

Query: 404 LLVPDVYPPPPRSWFNDYEDMLEDTWHTDFPRRSDISDNFYPGINVGLPMWESYPVLTTK 463
                                      T    R    +  +    +G+            
Sbjct: 100 ------------------------QVITIGNERFRCPETLFQPSFIGM------------ 123

Query: 464 PKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAIPSN 523
               E  G+ E   +SI     ID+++ L+ +  + GG  +  G+   +++ +    PS 
Sbjct: 124 ----ESAGIHETTYNSI-MKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPST 178

Query: 524 EAIDMVE-------------VLGILDFGRDAWIHREDWIRNGIHI 555
             I ++              +L  L   +  WI ++++   G  I
Sbjct: 179 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 223
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 99.96
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 99.92
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 99.89
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 98.92
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.06
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 97.47
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 96.49
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 93.95
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 92.79
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 87.41
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 86.2
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 85.36
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 81.6
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-40  Score=322.66  Aligned_cols=210  Identities=20%  Similarity=0.311  Sum_probs=171.4

Q ss_pred             CcceEEEeeCCCeEEEEEeeCCeeeccCcEEeccchhHHHHHHHHHHHhcCCCCCcccccccccchHHHHHHHHHHcccc
Q 008119          283 LSTACVVNMGAQVTSVICVEDGVALPNTEKTLPFGGEDISRCLLWTQRHHQTWPQIRTDILTKAMDLLMLNRIKESYCEI  362 (577)
Q Consensus       283 ~~tglVVDiG~~~T~V~pV~dG~vi~~s~~~l~~GG~dit~~L~~lL~~~~~~p~~~~~~l~~~~d~~l~e~LKe~~c~v  362 (577)
                      ++||||||+|++.|+|+||+||+++.+++.++++||++||++|.++|..++.       ++....+.++++++|+.+|++
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-------~~~~~~~~~~~~~~ke~~~~~   73 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGY-------SFVTTAEREIVRDIKEKLCYV   73 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTC-------CCCSHHHHHHHHHHHHHHCCC
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccC-------CcCCHHHHHHHHHHHHHHhhc
Confidence            5799999999999999999999999999999999999999999999987653       344567889999999999999


Q ss_pred             cCCcccccchhccccCCCCCCCceeEeeeeccCCCcccCCcccCCCCCCCCCCCCCCCcccccCCCcccccC-CCcCCCC
Q 008119          363 KEGEIDAVAVVHSYEDGMPPGSHKTRLIALNVPPMGLFYPKLLVPDVYPPPPRSWFNDYEDMLEDTWHTDFP-RRSDISD  441 (577)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~p~~~~k~~~~~~~~aP~~lF~p~i~~~e~~~~p~~~~~~~~ed~~~d~~~~~~~-er~~~~E  441 (577)
                      +.+....   ...... .+.....                                  |  .++|++.+.++ +|+.++|
T Consensus        74 ~~d~~~e---~~~~~~-~~~~~~~----------------------------------~--~lpdg~~i~i~~er~~~~E  113 (225)
T d2fxua2          74 ALDFENE---MATAAS-SSSLEKS----------------------------------Y--ELPDGQVITIGNERFRCPE  113 (225)
T ss_dssp             CSSHHHH---HHHHHH-CSTTCEE----------------------------------E--ECTTSCEEEESTHHHHHHH
T ss_pred             ccchhHH---Hhhccc-Cccccee----------------------------------E--ECCCCCEEEEchHhccccH
Confidence            8642211   000000 0000000                                  0  13455666665 7999999


Q ss_pred             CCCCCc-CCCCCCCCCCCccCCCCCCccCCCHHHHHHHHHhcCCChhhHHHhhcCeEEecCCcCCCChHHHHHHHHHhhC
Q 008119          442 NFYPGI-NVGLPMWESYPVLTTKPKKEEKIGLAEAVTSSILSTGRIDLQRKLFCSIQLIGGVALTGGLIPAVEERVLHAI  520 (577)
Q Consensus       442 ~lfp~~-~~~~~~~~~~~~~~~~~~~~~~~gL~eaI~~SI~~c~~~d~r~~L~~NIvLvGG~S~ipG~~~RLe~eL~~~~  520 (577)
                      .||.+. .+                 .+..||+++|.+||.+| |.|+|+.|++||+|+||+|++|||.+||++||..+.
T Consensus       114 ~lF~p~~~~-----------------~~~~gl~~~i~~sI~~~-~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~  175 (225)
T d2fxua2         114 TLFQPSFIG-----------------MESAGIHETTYNSIMKC-DIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA  175 (225)
T ss_dssp             TTTCGGGGT-----------------CCSCCHHHHHHHHHHTS-CHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred             hhcCccccC-----------------CccCChhHHHHHHhhcC-CcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhh
Confidence            999543 32                 35679999999999999 999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEE-------------eeecCCCCceeEeHHHHhhcCCCcee
Q 008119          521 PSNEAIDMVEV-------------LGILDFGRDAWIHREDWIRNGIHIGS  557 (577)
Q Consensus       521 P~~~~v~~v~v-------------lasL~sf~~~wItr~EYeE~G~~il~  557 (577)
                      |...++++++.             ||+|++|+++||||+||+|+|++|||
T Consensus       176 ~~~~~~~v~~~~~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         176 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             ccccceEEecCCCCCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            98888776543             89999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure