Citrus Sinensis ID: 008120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
MSAADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEKPSKEFRVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLTN
ccccccccccccccccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEccEEcccccccccccccccccEEEEEEEcccccccEEEcccccEEEEEccccccHHHHHHHHHHHccccccccccEEEEccEEccccccccccccccccEEEEEEccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccccEEcEEcccccccccccccccccccccccccccEEEcccccccccEEEEccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccc
ccccEEEEccccccccccccccccccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHcccccccccEEEEEccccccccccHHccccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccccccEEEEcccEcccccEHHHccccccccEEEEEEcccEEEEEEcccEEEEEEEccccccccccccccccccccHEEccccccccccEcccEEEcccccccHHHHHHHHHHHHHHHcccccEEEccccccEEEEEcccccEEEEEEcccccccccccccccccEEEcccccccccEcccHHHHHHHHHHHcccccccEEEEEcccccccccccHEEEEcccccccccccccccccccEEEHHHHccccccHHHcccccccHHHEEEEEEEEEEEEEcccccccEEEEEccccEEEEEEcccccccccccccccEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcc
msaadialnpiqhspgycnnltgrsssESILIYLSVsgslvpmrvletdsIESVKLRIQTCKGFVVKKQKlvfggrelarnHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQeifcdgeklddqRLIDDICKDNDAVIHLLVQKSAkvrakpvekdFELSVVAAEsnertvrvdegekpskefrvvprepivrdfwlepvivnpkvKLSSVMWDLINStfdglergnkpirssdgtggtyfmqdstgheyvsvfkpideepkavnnprglpvsldgeglkrgtrvgEGALREVAAYVLdhpksgprslsgetmgfagipptVMVRClhegfnhpegyehALKNVKLGSLQMFMkndgncedmgpgafpveeVHKISVFDIRMAnadrhagniligkgdngqtvlipidhgyclpenfedctfdwlywpqarepyspqtvDYIKSLDAEQDIELLKFygwnipleCARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLTN
msaadialnpiqhspgyCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQklvfggrelarnHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRiarkgkgfvdvVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVqksakvrakpvekdfelsvvaaesnertvrvdegekpskefrvvprepivrdfwlepvivnpkvkLSSVMWDLINStfdglergnkpirssdgtgGTYFMQDSTGHEYVSVFKPIDeepkavnnprglpvsldgeglkrGTRVGEGALREVAAYVLdhpksgprslsGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERglsafsigsimcretVNKESVIEEIVREAQDSLLpgiseaafletvskitdyrldkltn
MSAADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVlhlvlklsdlllITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEKPSKEFRVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLTN
****************YCNNLT*****ESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRA******F**************************RVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGL***************TYFMQD*TGHEYVSVFK********************************GALREVAAYVL**************MGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYR******
******A***IQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEK********PREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNG*TVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRL*****
MSAADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEKPSKEFRVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLTN
**AADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESN*****VDEGEKPSKEFRVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLT*
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MSAADIALNPIQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEKPSKEFRVVPREPIVRDFWLEPVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query577 2.2.26 [Sep-21-2011]
Q9C671 630 Probable phosphatidylinos no no 0.454 0.415 0.4 1e-52
Q8RUC6154 Ubiquitin-NEDD8-like prot no no 0.244 0.915 0.298 2e-12
Q9SHE7156 Ubiquitin-NEDD8-like prot no no 0.244 0.903 0.298 3e-12
P0C031153 Ubiquitin-NEDD8-like prot no no 0.244 0.921 0.298 4e-12
P0C030153 Ubiquitin-NEDD8-like prot no no 0.244 0.921 0.298 4e-12
P0C073153 Ubiquitin-NEDD8-like prot N/A no 0.244 0.921 0.298 5e-12
P0C032154 Ubiquitin-like protein-NE no no 0.242 0.909 0.303 8e-12
P0CG54311 Polyubiquitin-B OS=Cavia yes no 0.263 0.488 0.277 4e-11
P0CH28690 Polyubiquitin-C OS=Bos ta yes no 0.261 0.218 0.285 3e-10
P42740457 Polyubiquitin OS=Aglaotha N/A no 0.246 0.310 0.289 4e-10
>sp|Q9C671|P4K2B_ARATH Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1 Back     alignment and function desciption
 Score =  207 bits (528), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/285 (40%), Positives = 159/285 (55%), Gaps = 23/285 (8%)

Query: 258 GLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGE-GLK 316
            +++G  P+  + G GG Y+ ++S G E V++ KP DEEP A NNP+G      G+ GLK
Sbjct: 158 AVKKGIDPVAVNSGLGGAYYFKNSRG-ESVAIVKPTDEEPYAPNNPKGFVGKALGQPGLK 216

Query: 317 RGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEHA 376
           R  RVGE   REVAAY+LD               FA +PPT +V+  H  FN  +G + +
Sbjct: 217 RSVRVGETGYREVAAYLLDKEH------------FANVPPTALVKITHSIFNVNDGVKAS 264

Query: 377 -----LKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDIRMANADRHAGNILIG 431
                +   K+ SLQ F+ +D +  + G   FPV  VH+I + DIR+ N DRH+GN+L+ 
Sbjct: 265 KPMEKMLVSKIASLQQFIPHDYDASEHGTSNFPVSAVHRIGILDIRILNTDRHSGNLLVK 324

Query: 432 KGDN----GQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDI 487
           K D     GQ  L+PIDHG CLPE  ED  F+W++WPQA  P+S   + YI +LD   D 
Sbjct: 325 KLDGDGMFGQVELVPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDELKYIANLDPLGDC 384

Query: 488 ELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRE 532
           E+L+     +     R L + T+ LK+    GL    IG +M RE
Sbjct: 385 EMLRRELPMVREASLRVLVLCTIFLKEAAANGLCLAEIGEMMTRE 429
The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6EC: 7
>sp|Q8RUC6|RUB2_ARATH Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=1 SV=3 Back     alignment and function description
>sp|Q9SHE7|RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=3 Back     alignment and function description
>sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=2 SV=2 Back     alignment and function description
>sp|P0C030|RUB1_ORYSJ Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=2 SV=2 Back     alignment and function description
>sp|P0C073|RUB1_DESAN Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=2 Back     alignment and function description
>sp|P0C032|RUB3_ORYSJ Ubiquitin-like protein-NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=2 Back     alignment and function description
>sp|P0CG54|UBB_CAVPO Polyubiquitin-B OS=Cavia porcellus GN=UBB PE=2 SV=1 Back     alignment and function description
>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1 Back     alignment and function description
>sp|P42740|UBIQP_AGLNE Polyubiquitin OS=Aglaothamnion neglectum PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
224053771583 predicted protein [Populus trichocarpa] 0.998 0.987 0.740 0.0
255537819584 protein with unknown function [Ricinus c 0.998 0.986 0.749 0.0
225426304583 PREDICTED: uncharacterized protein LOC10 0.994 0.984 0.747 0.0
225455384585 PREDICTED: probable phosphatidylinositol 0.996 0.982 0.692 0.0
356495721569 PREDICTED: probable phosphatidylinositol 0.975 0.989 0.695 0.0
356511443568 PREDICTED: uncharacterized protein LOC10 0.977 0.992 0.693 0.0
356527682569 PREDICTED: uncharacterized protein LOC10 0.949 0.963 0.687 0.0
255551301583 ubiquitin, putative [Ricinus communis] g 0.954 0.945 0.685 0.0
357481379 725 Phosphatidylinositol 4-kinase type 2-bet 0.986 0.784 0.670 0.0
297742348516 unnamed protein product [Vitis vinifera] 0.882 0.986 0.682 0.0
>gi|224053771|ref|XP_002297971.1| predicted protein [Populus trichocarpa] gi|222845229|gb|EEE82776.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/582 (74%), Positives = 502/582 (86%), Gaps = 6/582 (1%)

Query: 1   MSAADIALNPI-----QHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVK 55
           MS  D+ L+PI        PGYC          SILIY+SV GS +PMRV E+DSI +VK
Sbjct: 1   MSVVDVGLSPIFKESGHFLPGYCGQKGPVIEDSSILIYISVGGSSIPMRVFESDSIAAVK 60

Query: 56  LRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCG 115
           LRIQT KGFVV KQKLVFGGRELARN SLVKDYGVT GNVLHLVLKLSDLL + VRT+ G
Sbjct: 61  LRIQTRKGFVVNKQKLVFGGRELARNDSLVKDYGVTRGNVLHLVLKLSDLLFVIVRTNSG 120

Query: 116 KELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIH 175
           +E EFH+DR+RNVGY+KQRI ++GKGFVDV DQEIF +G+KLDDQ+++DDIC DNDA IH
Sbjct: 121 EEFEFHVDRFRNVGYIKQRIFKEGKGFVDVEDQEIFFNGKKLDDQKIVDDICNDNDAAIH 180

Query: 176 LLVQKSAKVRAKPVEKDFELSVVAAESNERTVR-VDEGEKPSKEFRVVPREPIVRDFWLE 234
           LLV+KSAKVRAKP+EKDFE+ VVA+ S E+  R +D GE  S+E  V+ +E   R+F LE
Sbjct: 181 LLVEKSAKVRAKPLEKDFEILVVASNSTEKRDRSIDGGENRSEEVLVLSKERSGRNFMLE 240

Query: 235 PVIVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPID 294
           PVIVNPKVKL+SV W++INS   GLE+GN PIRSS+GTGGTYF+QD +G E+VSVFKP+D
Sbjct: 241 PVIVNPKVKLNSVFWNMINSALGGLEKGNAPIRSSEGTGGTYFLQDPSGQEFVSVFKPVD 300

Query: 295 EEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGI 354
           EEP AVNNP+GLPVS +GEGLKRGTRVGEGALREVAAY+LDHP+SGPR+++GET+GFAG+
Sbjct: 301 EEPMAVNNPQGLPVSSNGEGLKRGTRVGEGALREVAAYILDHPRSGPRAVNGETIGFAGV 360

Query: 355 PPTVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVF 414
           PPTV+V+CLH+GFNHPEG+E+A++  K+GSLQMFMKN+GNCED+GPGAFPVEEVHKISVF
Sbjct: 361 PPTVIVQCLHKGFNHPEGFENAMEYAKIGSLQMFMKNEGNCEDIGPGAFPVEEVHKISVF 420

Query: 415 DIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQT 474
           DIRMAN DRHAGNILI  G++GQT+LIPIDHGYCLPE FEDCTFDWLYWPQAR+PYSP+ 
Sbjct: 421 DIRMANTDRHAGNILISTGEDGQTILIPIDHGYCLPEKFEDCTFDWLYWPQARQPYSPEV 480

Query: 475 VDYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETV 534
           VDYI SLDAE DI L++FYGWNIPLECAR LRISTMLLKKGVERGL+ F+IGSIMCRE +
Sbjct: 481 VDYINSLDAEHDIALVQFYGWNIPLECARVLRISTMLLKKGVERGLTPFAIGSIMCRENL 540

Query: 535 NKESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDKLT 576
           NKESVIEEI+REA+DSLLPG+SEAAFLE VS I DYRLD+ T
Sbjct: 541 NKESVIEEIIREAEDSLLPGMSEAAFLEAVSNIMDYRLDEFT 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537819|ref|XP_002509976.1| protein with unknown function [Ricinus communis] gi|223549875|gb|EEF51363.1| protein with unknown function [Ricinus communis] Back     alignment and taxonomy information
>gi|225426304|ref|XP_002268042.1| PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225455384|ref|XP_002277933.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495721|ref|XP_003516722.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] Back     alignment and taxonomy information
>gi|356511443|ref|XP_003524436.1| PREDICTED: uncharacterized protein LOC100809172 [Glycine max] Back     alignment and taxonomy information
>gi|356527682|ref|XP_003532437.1| PREDICTED: uncharacterized protein LOC100782882 [Glycine max] Back     alignment and taxonomy information
>gi|255551301|ref|XP_002516697.1| ubiquitin, putative [Ricinus communis] gi|223544192|gb|EEF45716.1| ubiquitin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357481379|ref|XP_003610975.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|355512310|gb|AES93933.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|297742348|emb|CBI34497.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query577
TAIR|locus:2169774574 AT5G24240 [Arabidopsis thalian 0.979 0.984 0.575 1.5e-177
TAIR|locus:2039064566 PI4K GAMMA 4 "phosphoinositide 0.705 0.719 0.590 1.8e-133
TAIR|locus:2019419301 AT1G64460 [Arabidopsis thalian 0.518 0.993 0.733 1.4e-119
TAIR|locus:2056799 650 PI4K GAMMA 7 "AT2G03890" [Arab 0.507 0.450 0.394 1.4e-56
TAIR|locus:2023865 622 AT1G13640 "AT1G13640" [Arabido 0.462 0.429 0.408 2e-55
TAIR|locus:2028798 630 AT1G26270 "AT1G26270" [Arabido 0.519 0.476 0.385 3.3e-53
TAIR|locus:2019459213 AT1G64470 "AT1G64470" [Arabido 0.329 0.892 0.569 5.6e-52
TAIR|locus:2102604 536 AT3G56600 [Arabidopsis thalian 0.480 0.516 0.400 5.1e-51
TAIR|locus:2058485 561 PI4K GAMMA 1 "AT2G40850" [Arab 0.490 0.504 0.374 2e-49
DICTYBASE|DDB_G0291370401 DDB_G0291370 "phosphatidylinos 0.461 0.663 0.328 3.4e-35
TAIR|locus:2169774 AT5G24240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 333/579 (57%), Positives = 433/579 (74%)

Query:     1 MSAADIALNP----IQHSPGYCNNLTGRSSSESILIYLSVSGSLVPMRVLETDSIESVKL 56
             MS A +AL+P    + + PG      G +  + IL++L+++GS++P RV+E+DSI SVKL
Sbjct:     1 MSVASVALSPALEELVNFPGIIGRF-GFNLDDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query:    57 RIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVXXXXXXXXXXXXITVRTSCGK 116
             RIQ+ KGF VKKQKL++ GRE++RN S ++DYG+  G +            I+VRT  GK
Sbjct:    60 RIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query:   117 ELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHL 176
             E E  ++R RNVGY+KQ+IA K K      D E+  DGE+LDDQRLI D+C++ D VIHL
Sbjct:   120 EFELVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHL 179

Query:   177 LVQKSAKVRAKPVEKDFELSVVAAESNERTVRVDEGEKPSKEFRVVPREPIVRDFWLEPV 236
             L+ KSAKVRAKPV KDFE+ +    +++  V    G+  S E +  P+E     F++EP 
Sbjct:   180 LISKSAKVRAKPVGKDFEVFIEDV-NHKHNVDGRRGKNISSEAK--PKE-----FFVEPF 231

Query:   237 IVNPKVKLSSVMWDLINSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEE 296
             IVNP++KL  ++ +LI+ST +GLE+GN PIRSSDG+GG YFMQD +GH+YVSVFKPIDEE
Sbjct:   232 IVNPEIKLPILLKELISSTLEGLEKGNGPIRSSDGSGGAYFMQDPSGHKYVSVFKPIDEE 291

Query:   297 PKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAYVLDHPKSGPRSLSGETMGFAGIPP 356
             P AVNNP G PVS+DGEGLK+GT+VGEGA+REVAAY+LD+P +GPR+   +  GFAG+PP
Sbjct:   292 PMAVNNPHGQPVSVDGEGLKKGTQVGEGAIREVAAYILDYPMTGPRTFPHDQTGFAGVPP 351

Query:   357 TVMVRCLHEGFNHPEGYEHALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEVHKISVFDI 416
             T MV+CLH+ FNHP GY  + +N K+GSLQMF+ N G+CEDMG   FPV++VHKISV DI
Sbjct:   352 TTMVKCLHKDFNHPNGYSFSPENTKIGSLQMFVSNVGSCEDMGYRVFPVDQVHKISVLDI 411

Query:   417 RMANADRHAGNILIGK-GDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTV 475
             R+ANADRHAGNIL+ + G +GQ VL PIDHGYC P  FEDCTF+WLYWPQA+EPYS +T+
Sbjct:   412 RLANADRHAGNILVSRDGKDGQMVLTPIDHGYCFPNKFEDCTFEWLYWPQAKEPYSSETL 471

Query:   476 DYIKSLDAEQDIELLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVN 535
             +YIKSLD E+DIELL+F+GW IP  C R LRISTMLLKKG  +GL+ F+IGSIMCRET+ 
Sbjct:   472 EYIKSLDPEKDIELLRFHGWEIPPSCTRVLRISTMLLKKGSAKGLTPFTIGSIMCRETLK 531

Query:   536 KESVIEEIVREAQDSLLPGISEAAFLETVSKITDYRLDK 574
             +ESVIE+I+ +A+  +    +E  F+ TVS I D RLD+
Sbjct:   532 EESVIEQIIHDAEAIVPTETTEDEFISTVSAIMDNRLDQ 570
GO:0009507 "chloroplast" evidence=ISM
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0005777 "peroxisome" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2039064 PI4K GAMMA 4 "phosphoinositide 4-kinase gamma 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019419 AT1G64460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056799 PI4K GAMMA 7 "AT2G03890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023865 AT1G13640 "AT1G13640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028798 AT1G26270 "AT1G26270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019459 AT1G64470 "AT1G64470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102604 AT3G56600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058485 PI4K GAMMA 1 "AT2G40850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291370 DDB_G0291370 "phosphatidylinositol 3-kinase-related protein kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.67LOW CONFIDENCE prediction!
3rd Layer2.7.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010767
hypothetical protein (583 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
pfam00454233 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- 2e-47
pfam0024069 pfam00240, ubiquitin, Ubiquitin family 5e-13
cd0180376 cd01803, Ubiquitin, Ubiquitin 3e-08
smart0021372 smart00213, UBQ, Ubiquitin homologues 2e-07
cd0176969 cd01769, UBL, Ubiquitin-like domain of UBL 7e-07
cd0180676 cd01806, Nedd8, Nebb8-like ubiquitin protein 9e-07
cd01802103 cd01802, AN1_N, ubiquitin-like domain of AN1 2e-05
TIGR03843253 TIGR03843, TIGR03843, conserved hypothetical prote 3e-05
cd0176969 cd01769, UBL, Ubiquitin-like domain of UBL 6e-04
PTZ0004476 PTZ00044, PTZ00044, ubiquitin; Provisional 0.001
cd0180972 cd01809, Scythe_N, Ubiquitin-like domain of Scythe 0.003
cd0180076 cd01800, SF3a120_C, Ubiquitin-like domain of Mamma 0.004
>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase Back     alignment and domain information 
 Score =  165 bits (419), Expect = 2e-47
 Identities = 64/272 (23%), Positives = 87/272 (31%), Gaps = 58/272 (21%)

Query: 273 GGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDGEGLKRGTRVGEGALREVAAY 332
           GG    QD    + + +   +                            GEG  R +AAY
Sbjct: 8   GGDDLRQDERVLQLIGLMNKL--------------------------LSGEGLDRRLAAY 41

Query: 333 VLDH--PKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHP---EGYEHALKNV-KLGSLQ 386
           ++    P SG       +   A IP T MV+     FN+      +E       K+G LQ
Sbjct: 42  LVIPLGPGSGLIEWVPNSTTLAEIPRTYMVKKGIPLFNYSRKVLVFESRTALFPKVGLLQ 101

Query: 387 MFMKNDGNCEDMG-PGAFPVEEVHKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDH 445
            F+K+  + E+ G      V     +SV D  + N DRH  NIL+     G+  L  ID 
Sbjct: 102 WFVKHFPDAEEWGEARKNFVRSCAGMSVLDYILGNGDRHLDNILV-DKTTGK--LFHIDF 158

Query: 446 GYCLP-----ENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIELLKFYGWNIPLE 500
           G C P        E   F          P+      Y    D   D  L +         
Sbjct: 159 GLCFPKAKRGPKPERVPFRLTR------PFVEAMGGY----DPSGDEGLFRELCETAYEA 208

Query: 501 CARTLRISTMLLKKGVERGLSAFSIGSIMCRE 532
             R L + T LL       L     G    R 
Sbjct: 209 LRRNLNLLTNLL-------LLMVEDGLPDWRS 233

Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233
>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family Back     alignment and domain information
>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin Back     alignment and domain information
>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues Back     alignment and domain information
>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL Back     alignment and domain information
>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein Back     alignment and domain information
>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1 Back     alignment and domain information
>gnl|CDD|234372 TIGR03843, TIGR03843, conserved hypothetical protein Back     alignment and domain information
>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL Back     alignment and domain information
>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional Back     alignment and domain information
>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 577
KOG2381286 consensus Phosphatidylinositol 4-kinase [Signal tr 100.0
TIGR03843253 conserved hypothetical protein. This model represe 100.0
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 99.66
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 99.63
cd01802103 AN1_N ubiquitin-like domain of AN1. AN1 (also know 99.62
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 99.62
PTZ0004476 ubiquitin; Provisional 99.61
cd0180774 GDX_N ubiquitin-like domain of GDX. GDX contains a 99.6
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 99.57
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 99.55
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 99.55
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 99.55
cd0179778 NIRF_N amino-terminal ubiquitin-like domain of Np9 99.54
cd0179374 Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui 99.53
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 99.52
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 99.52
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 99.51
PTZ0004476 ubiquitin; Provisional 99.51
cd0181074 ISG15_repeat2 ISG15 ubiquitin-like protein, second 99.5
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 99.5
cd0179870 parkin_N amino-terminal ubiquitin-like of parkin p 99.5
KOG0003128 consensus Ubiquitin/60s ribosomal protein L40 fusi 99.48
cd0180577 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo 99.48
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 99.48
cd0179470 DC_UbP_C dendritic cell derived ubiquitin-like pro 99.48
cd0179173 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know 99.47
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 99.46
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 99.46
cd0180376 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 99.46
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 99.44
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 99.44
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 99.43
cd0179280 ISG15_repeat1 ISG15 ubiquitin-like protein, first 99.42
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 99.42
cd0180478 midnolin_N Ubiquitin-like domain of midnolin. midn 99.41
cd0180871 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC 99.41
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 99.41
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 99.4
KOG0004156 consensus Ubiquitin/40S ribosomal protein S27a fus 99.4
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 99.4
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 99.37
KOG000570 consensus Ubiquitin-like protein [Cell cycle contr 99.37
cd0179671 DDI1_N DNA damage inducible protein 1 ubiquitin-li 99.36
cd0179079 Herp_N Homocysteine-responsive endoplasmic reticul 99.36
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 99.35
KOG000570 consensus Ubiquitin-like protein [Cell cycle contr 99.34
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 99.32
cd0179079 Herp_N Homocysteine-responsive endoplasmic reticul 99.3
cd0180076 SF3a120_C Ubiquitin-like domain of Mammalian splic 99.24
KOG0003128 consensus Ubiquitin/60s ribosomal protein L40 fusi 99.24
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 99.24
KOG0004156 consensus Ubiquitin/40S ribosomal protein S27a fus 99.23
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 99.22
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 99.21
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 99.18
cd0181575 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC 99.17
cd0181575 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC 99.13
TIGR00601378 rad23 UV excision repair protein Rad23. All protei 99.13
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 99.13
cd0181374 UBP_N UBP ubiquitin processing protease. The UBP ( 99.11
PF00454235 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina 99.05
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 99.04
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 99.02
cd01795107 USP48_C USP ubiquitin-specific protease. The USP ( 99.02
cd0179975 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO 98.98
KOG0011340 consensus Nucleotide excision repair factor NEF2, 98.97
KOG0010493 consensus Ubiquitin-like protein [Posttranslationa 98.95
KOG0010493 consensus Ubiquitin-like protein [Posttranslationa 98.89
KOG0011340 consensus Nucleotide excision repair factor NEF2, 98.87
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 98.86
cd0176969 UBL Ubiquitin-like domain of UBL. UBLs function by 98.86
cd01814113 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT 98.84
cd0178984 Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol 98.81
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 98.79
cd01795107 USP48_C USP ubiquitin-specific protease. The USP ( 98.76
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 98.7
KOG000175 consensus Ubiquitin and ubiquitin-like proteins [P 98.66
KOG000175 consensus Ubiquitin and ubiquitin-like proteins [P 98.55
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 98.49
KOG3829486 consensus Uncharacterized conserved protein [Funct 98.36
cd01788119 ElonginB Ubiquitin-like domain of Elongin B. Elong 98.35
cd0181180 OASL_repeat1 2'-5' oligoadenylate synthetase-like 98.3
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 98.29
cd0178984 Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol 98.24
KOG4248 1143 consensus Ubiquitin-like protein, regulator of apo 98.23
KOG4248 1143 consensus Ubiquitin-like protein, regulator of apo 98.17
PLN02560308 enoyl-CoA reductase 98.17
cd01788119 ElonginB Ubiquitin-like domain of Elongin B. Elong 98.14
PLN02560308 enoyl-CoA reductase 98.11
PF13881111 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB 98.1
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 97.9
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 97.9
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 97.8
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 97.74
cd0180177 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- 97.74
cd0180177 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- 97.74
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 97.35
KOG0006446 consensus E3 ubiquitin-protein ligase (Parkin prot 97.27
cd0181180 OASL_repeat1 2'-5' oligoadenylate synthetase-like 97.26
KOG0006446 consensus E3 ubiquitin-protein ligase (Parkin prot 97.25
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 96.87
KOG4495110 consensus RNA polymerase II transcription elongati 96.82
KOG349373 consensus Ubiquitin-like protein [Posttranslationa 96.67
KOG349373 consensus Ubiquitin-like protein [Posttranslationa 96.38
PF0780479 HipA_C: HipA-like C-terminal domain; InterPro: IPR 96.2
PF06702221 DUF1193: Protein of unknown function (DUF1193); In 95.94
KOG176999 consensus Ubiquitin-like proteins [Posttranslation 95.88
cd05167311 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), 95.8
cd05168293 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T 95.65
cd00895354 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl 95.47
KOG0906843 consensus Phosphatidylinositol 3-kinase VPS34, inv 95.3
cd00893289 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I 95.28
PF1030297 DUF2407: DUF2407 ubiquitin-like domain; InterPro: 95.15
KOG4495110 consensus RNA polymerase II transcription elongati 95.13
KOG0013231 consensus Uncharacterized conserved protein [Funct 95.09
PF0881779 YukD: WXG100 protein secretion system (Wss), prote 95.02
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 95.01
cd00896350 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class 94.87
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 94.77
PF13019162 Telomere_Sde2: Telomere stability and silencing 94.7
cd00891352 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic 94.56
PF0881779 YukD: WXG100 protein secretion system (Wss), prote 94.49
PF1030297 DUF2407: DUF2407 ubiquitin-like domain; InterPro: 94.48
cd05177354 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c 94.23
cd00894365 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c 94.01
cd05174361 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c 93.91
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 93.86
COG541781 Uncharacterized small protein [Function unknown] 93.68
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 93.68
cd05166353 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I 93.44
KOG176999 consensus Ubiquitin-like proteins [Posttranslation 93.38
KOG0013231 consensus Uncharacterized conserved protein [Funct 93.09
KOG3206234 consensus Alpha-tubulin folding cofactor B [Posttr 93.04
PF0078982 UBX: UBX domain; InterPro: IPR001012 The UBX domai 92.58
cd05124238 AFK Actin-Fragmin Kinase (AFK); catalytic domain. 92.4
PF09192275 Act-Frag_cataly: Actin-fragmin kinase, catalytic; 92.38
cd05173362 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl 91.9
cd05165366 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, 91.84
cd05176353 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c 91.1
smart0016680 UBX Domain present in ubiquitin-regulatory protein 90.56
smart0016680 UBX Domain present in ubiquitin-regulatory protein 90.43
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 90.19
PF13019162 Telomere_Sde2: Telomere stability and silencing 90.14
cd0177079 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is 89.9
KOG1639297 consensus Steroid reductase required for elongatio 89.13
PF14533213 USP7_C2: Ubiquitin-specific protease C-terminal; P 88.68
COG5227103 SMT3 Ubiquitin-like protein (sentrin) [Posttransla 87.68
cd05175366 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c 87.34
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 87.1
KOG0903847 consensus Phosphatidylinositol 4-kinase, involved 87.09
PF1483688 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A 86.64
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 85.89
KOG0012380 consensus DNA damage inducible protein [Replicatio 85.53
KOG4583391 consensus Membrane-associated ER protein involved 85.26
PF1504476 CLU_N: Mitochondrial function, CLU-N-term 85.21
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 84.96
COG541781 Uncharacterized small protein [Function unknown] 84.61
cd0176777 UBX UBX (ubiquitin regulatory X) domain. The UBX ( 84.4
PF12436249 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp 84.07
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 82.67
cd0177485 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i 82.45
cd0177279 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst 82.41
PF1504476 CLU_N: Mitochondrial function, CLU-N-term 82.27
KOG1639297 consensus Steroid reductase required for elongatio 82.07
PTZ003031374 phosphatidylinositol kinase; Provisional 82.07
PRK09775442 putative DNA-binding transcriptional regulator; Pr 80.81
PF1162088 GABP-alpha: GA-binding protein alpha chain; InterP 80.26
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.4e-65  Score=518.02  Aligned_cols=280  Identities=44%  Similarity=0.721  Sum_probs=256.2

Q ss_pred             HHHHHHHhcCCCcccccCCCCcEEEEEcCCCCeeEEEEecCCCCCcccCCCCCCCCCCCC-CCccCCcccCCchhh-hhh
Q 008120          253 NSTFDGLERGNKPIRSSDGTGGTYFMQDSTGHEYVSVFKPIDEEPKAVNNPRGLPVSLDG-EGLKRGTRVGEGALR-EVA  330 (577)
Q Consensus       253 ~~~~~~~~~g~~p~~~~~Gs~gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~-~~~~~g~~~geg~~r-EvA  330 (577)
                      .++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|+++...+ +|+++||++|+++.| |+|
T Consensus         2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a   80 (286)
T KOG2381|consen    2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA   80 (286)
T ss_pred             chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence            56889999999999999999999999999996 599999999999999999999985544 489999999777777 999


Q ss_pred             hhhhccCCCCCCCCcccccCCCCCCceeEEEeccCCccCCccccc--ccCCCcceeEeeeccCCCCCCCCCCCCcchhhh
Q 008120          331 AYVLDHPKSGPRSLSGETMGFAGIPPTVMVRCLHEGFNHPEGYEH--ALKNVKLGSLQMFMKNDGNCEDMGPGAFPVEEV  408 (577)
Q Consensus       331 AyllD~~~~~~~~~~~~~lgf~~VP~T~~v~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev  408 (577)
                      ||||||+            +|+.||+|.+++++|+.|||++++..  .....|+||+|+||++ .++.|++++.|+++|+
T Consensus        81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~  147 (286)
T KOG2381|consen   81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV  147 (286)
T ss_pred             hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence            9999985            89999999999999999999987532  2333799999999999 8888999999999999


Q ss_pred             hhheeeeeeeccCCCCCCceEEeeCCCCceEEeeeecCCcCCCCCCCCCccccccCCCCCCCChhHHHHHHcCChHHHHH
Q 008120          409 HKISVFDIRMANADRHAGNILIGKGDNGQTVLIPIDHGYCLPENFEDCTFDWLYWPQAREPYSPQTVDYIKSLDAEQDIE  488 (577)
Q Consensus       409 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~~IDhGl~fp~~~~~~~~~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~  488 (577)
                      |||+||||||+|||||+|||||++..........+|||||||....+++|+|+|||||+.|||+++++||  |++..|++
T Consensus       148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~  225 (286)
T KOG2381|consen  148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCN  225 (286)
T ss_pred             ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHH
Confidence            9999999999999999999999994433444566699999999999999999999999999999999999  99999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCChHHHHHHHHHhhcCC
Q 008120          489 LLKFYGWNIPLECARTLRISTMLLKKGVERGLSAFSIGSIMCRETVNKESVIEEIVREAQDSLLP  553 (577)
Q Consensus       489 ~l~~~~~~~~~~~~~~lr~~~~~Lk~~~~~glt~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~  553 (577)
                      ++|    +++++++++++++|+|+|+++++|||+.+||.+|+|+.+.. |.+|.+|.+|...+.+
T Consensus       226 ~~r----~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~  285 (286)
T KOG2381|consen  226 LLR----ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE  285 (286)
T ss_pred             HHH----HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence            999    68899999999999999999999999999999999998877 9999999999877654

>TIGR03843 conserved hypothetical protein Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>cd01802 AN1_N ubiquitin-like domain of AN1 Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01807 GDX_N ubiquitin-like domain of GDX Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF Back     alignment and domain information
>cd01793 Fubi Fubi ubiquitin-like protein Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>PTZ00044 ubiquitin; Provisional Back     alignment and domain information
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein Back     alignment and domain information
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01805 RAD23_N Ubiquitin-like domain of RAD23 Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein Back     alignment and domain information
>cd01791 Ubl5 UBL5 ubiquitin-like modifier Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd01803 Ubiquitin Ubiquitin Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd01804 midnolin_N Ubiquitin-like domain of midnolin Back     alignment and domain information
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain Back     alignment and domain information
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein Back     alignment and domain information
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 Back     alignment and domain information
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP Back     alignment and domain information
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP Back     alignment and domain information
>TIGR00601 rad23 UV excision repair protein Rad23 Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>cd01813 UBP_N UBP ubiquitin processing protease Back     alignment and domain information
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>cd01795 USP48_C USP ubiquitin-specific protease Back     alignment and domain information
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 Back     alignment and domain information
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair] Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>cd01769 UBL Ubiquitin-like domain of UBL Back     alignment and domain information
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4 Back     alignment and domain information
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>cd01795 USP48_C USP ubiquitin-specific protease Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only] Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>KOG3829 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd01788 ElonginB Ubiquitin-like domain of Elongin B Back     alignment and domain information
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2 Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B Back     alignment and domain information
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>cd01788 ElonginB Ubiquitin-like domain of Elongin B Back     alignment and domain information
>PLN02560 enoyl-CoA reductase Back     alignment and domain information
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 Back     alignment and domain information
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2 Back     alignment and domain information
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription] Back     alignment and domain information
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT) Back     alignment and domain information
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi Back     alignment and domain information
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription] Back     alignment and domain information
>KOG0013 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold [] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold [] Back     alignment and domain information
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi Back     alignment and domain information
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>COG5417 Uncharacterized small protein [Function unknown] Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0013 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast Back     alignment and domain information
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain Back     alignment and domain information
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes Back     alignment and domain information
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>smart00166 UBX Domain present in ubiquitin-regulatory proteins Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>cd01770 p47_UBX p47-like ubiquitin domain Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A Back     alignment and domain information
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair] Back     alignment and domain information
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15044 CLU_N: Mitochondrial function, CLU-N-term Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>COG5417 Uncharacterized small protein [Function unknown] Back     alignment and domain information
>cd01767 UBX UBX (ubiquitin regulatory X) domain Back     alignment and domain information
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain Back     alignment and domain information
>cd01772 SAKS1_UBX SAKS1-like UBX domain Back     alignment and domain information
>PF15044 CLU_N: Mitochondrial function, CLU-N-term Back     alignment and domain information
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00303 phosphatidylinositol kinase; Provisional Back     alignment and domain information
>PRK09775 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
2y5b_B152 Structure Of Usp21 In Complex With Linear Diubiquit 9e-07
3u30_A172 Crystal Structure Of A Linear-Specific Ubiquitin Fa 1e-06
2zvn_A154 Nemo Cozi Domain Incomplex With Diubiquitin In P212 1e-06
3b08_A152 Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl 1e-06
2w9n_A152 Crystal Structure Of Linear Di-Ubiquitin Length = 1 1e-06
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
Query: 35  SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGN 94
           +++G  + + V  +D+IE+VK +IQ  +G    +Q+L+F G++L    +L  DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKES 65
Query: 95  VXXXXXXXXXXXXITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDG 154
                        I V+T  GK +   ++    +  +K +I  + K  +    Q +   G
Sbjct: 66  TLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKI--QDKEGIPPDQQRLIFAG 123
Query: 155 EKLDDQRLIDDICKDNDAVIHLLVQ 179
           ++L+D R + D     ++ +HL+++
Sbjct: 124 KQLEDGRTLSDYNIQKESTLHLVLR 148
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172 Back     alignment and structure
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154 Back     alignment and structure
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152 Back     alignment and structure
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query577
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 1e-19
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 2e-08
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 2e-19
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 2e-08
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 4e-18
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 1e-09
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 3e-14
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 4e-14
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 2e-05
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 4e-13
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 9e-05
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 7e-13
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 9e-05
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 1e-12
3u5c_F225 RP14, S2, YS8, 40S ribosomal protein S5; translati 2e-04
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 3e-12
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 2e-04
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 4e-12
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 4e-12
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 7e-04
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 4e-12
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 4e-04
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 5e-12
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 5e-05
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 5e-12
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 3e-04
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 5e-12
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 2e-05
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 9e-12
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 1e-11
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 2e-11
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 3e-05
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 2e-11
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 8e-04
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 2e-11
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 1e-05
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 3e-11
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 3e-04
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 4e-11
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 6e-05
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 5e-11
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 5e-11
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 7e-05
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 6e-11
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 5e-05
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 2e-10
1we6_A111 Splicing factor, putative; structural genomics, ub 3e-10
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 3e-10
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 4e-10
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 8e-05
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 4e-10
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 5e-10
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 9e-10
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 4e-05
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 1e-09
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 5e-04
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 1e-09
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 1e-09
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 1e-09
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 6e-04
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 2e-09
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 3e-09
3m62_B106 UV excision repair protein RAD23; armadillo-like r 9e-09
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 1e-08
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 1e-08
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 2e-08
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 3e-04
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 3e-08
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 6e-07
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 9e-08
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 1e-07
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 8e-05
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 2e-07
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 4e-06
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 6e-05
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 6e-05
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 9e-05
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 3e-04
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172 Back     alignment and structure
 Score = 85.5 bits (211), Expect = 1e-19
 Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 4/153 (2%)

Query: 27  SESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLV 85
              + I++ +++G  + + V  +D+IE+VK +IQ  +G    +Q+L+F G++L    +L 
Sbjct: 18  GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL- 76

Query: 86  KDYGVTGGNVLHLVLKLSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDV 145
            DY +   + LHLVL+L   + I V+T  GK +   ++    +  +K +I  K    +  
Sbjct: 77  SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPP 134

Query: 146 VDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLV 178
             Q +   G++L+D R + D     ++ +HL++
Sbjct: 135 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152 Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159 Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76 Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76 Back     alignment and structure
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85 Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89 Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88 Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88 Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111 Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84 Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87 Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87 Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98 Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96 Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76 Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76 Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100 Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111 Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79 Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79 Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90 Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93 Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96 Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106 Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85 Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128 Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95 Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189 Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189 Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85 Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85 Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102 Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189 Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368 Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 99.98
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 99.97
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 99.96
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 99.71
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 99.67
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 99.65
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 99.64
3v6c_B91 Ubiquitin; structural genomics, structural genomic 99.64
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 99.64
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 99.63
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 99.62
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 99.62
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 99.6
3plu_A93 Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- 99.6
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 99.6
3phx_B79 Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu 99.59
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 99.59
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 99.59
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 99.59
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 99.59
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 99.59
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 99.58
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 99.58
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 99.58
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 99.58
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 99.58
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 99.57
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 99.57
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 99.57
4eew_A88 Large proline-rich protein BAG6; ubiquitin-like fo 99.57
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 99.57
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 99.56
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 99.56
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 99.56
2faz_A78 Ubiquitin-like containing PHD and ring finger DOM 99.56
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 99.56
3m62_B106 UV excision repair protein RAD23; armadillo-like r 99.55
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 99.55
4dwf_A90 HLA-B-associated transcript 3; ubiquitin-like doma 99.55
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 99.54
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 99.54
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 99.54
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 99.54
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 99.53
2wyq_A85 HHR23A, UV excision repair protein RAD23 homolog A 99.53
2kk8_A84 Uncharacterized protein AT4G05270; solution arabid 99.53
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 99.53
4fbj_B88 NEDD8; effector-HOST target complex, glutamine dea 99.53
2lxa_A87 Ubiquitin-like protein MDY2; ubiquitin-like domain 99.52
4a20_A98 Ubiquitin-like protein MDY2; protein binding, GET- 99.52
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 99.52
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 99.52
3v6c_B91 Ubiquitin; structural genomics, structural genomic 99.52
3rt3_B159 Ubiquitin-like protein ISG15; ubiquitin-like domai 99.52
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 99.27
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 99.51
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 99.51
1uh6_A100 Ubiquitin-like 5; beta-grAsp fold, structural geno 99.51
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 99.5
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 99.5
3m62_B106 UV excision repair protein RAD23; armadillo-like r 99.5
1ndd_A76 NEDD8, protein (ubiquitin-like protein NEDD8); pro 99.49
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 99.49
1wgh_A116 Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo 99.49
3dbh_I88 NEDD8; cell cycle, activating enzyme, apoptosis, m 99.49
2fnj_B118 Transcription elongation factor B polypeptide 2; b 99.49
1uel_A95 HHR23B, UV excision repair protein RAD23 homolog B 99.49
3k9o_B96 Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b 99.49
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 99.49
2hj8_A88 Interferon-induced 17 kDa protein; HR2873B, human 99.49
4ajy_B118 Transcription elongation factor B polypeptide 2; E 99.48
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 99.48
1we6_A111 Splicing factor, putative; structural genomics, ub 99.48
1wyw_B97 Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho 99.47
3n3k_B85 Ubiquitin; hydrolase, protease, thiol protease, DU 99.47
1wh3_A87 59 kDa 2'-5'-oligoadenylate synthetase like protei 99.47
2dzi_A81 Ubiquitin-like protein 4A; GDX, structural genomic 99.47
1sif_A88 Ubiquitin; hydrophobic mutants, folding, stability 99.47
3a9j_A76 Ubiquitin; protein complex, cytoplasm, isopeptide 99.47
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 99.47
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 99.47
1wy8_A89 NP95-like ring finger protein, isoform A; ubiquiti 99.47
4hcn_B98 Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas 99.47
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 99.46
3mtn_B85 UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit 99.46
1ttn_A106 DC-UBP, dendritic cell-derived ubiquitin-like prot 99.46
1se9_A126 Ubiquitin family; ubiquitin-like, cell-free, wheat 99.45
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 99.45
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 99.44
2bwf_A77 Ubiquitin-like protein DSK2; signaling protein, UB 99.44
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 99.44
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 99.44
2kan_A94 Uncharacterized protein AR3433A; ubiquitin fold, a 99.44
1wgd_A93 Homocysteine-responsive endoplasmic reticulum- res 99.44
3u30_A172 Ubiquitin, linear DI-ubiquitin; immune system; 2.4 99.44
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 99.43
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 99.43
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 99.42
1yqb_A100 Ubiquilin 3; structural genomics consortium, ubiqu 99.42
3vdz_A111 Ubiquitin-40S ribosomal protein S27A; gadolinium, 99.42
1yx5_B98 Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s 99.42
3b1l_X76 E3 ubiquitin-protein ligase parkin; proteasome, AL 99.13
2gow_A125 HCG-1 protein, ubiquitin-like protein 3; BC059385, 99.42
1wju_A100 NEDD8 ultimate buster-1; ubiquitin-like domain, st 99.42
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 99.42
2l7r_A93 Ubiquitin-like protein FUBI; structural genomics, 99.41
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 99.41
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 99.41
2ojr_A111 Ubiquitin; lanthide-binding TAG, terbium, TB, SAD 99.41
2klc_A101 Ubiquilin-1; ubiquitin-like, structural genomics, 99.41
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 99.41
4ajy_B118 Transcription elongation factor B polypeptide 2; E 99.41
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 99.41
1v2y_A105 3300001G02RIK protein; hypothetical protein, ubiqu 99.41
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 99.4
3b08_A152 Polyubiquitin-C, ubiquitin; protein complex, signa 99.39
2fnj_B118 Transcription elongation factor B polypeptide 2; b 99.39
2kdb_A99 Homocysteine-responsive endoplasmic reticulum- res 99.39
3l0w_B169 Monoubiquitinated proliferating cell nuclear antig 99.39
1we6_A111 Splicing factor, putative; structural genomics, ub 99.39
1wia_A95 Hypothetical ubiquitin-like protein (riken cDNA 20 99.39
1wx7_A106 Ubiquilin 3; ubiquitin-like domain, structural gen 99.38
1wx8_A96 Riken cDNA 4931431F19; ubiquitin-like domain, ubiq 99.37
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 99.37
3m63_B101 Ubiquitin domain-containing protein DSK2; armadill 99.36
1j8c_A125 Ubiquitin-like protein hplic-2; ubiquitin-like dom 99.36
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 99.36
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 99.36
2kdi_A114 Ubiquitin, vacuolar protein sorting-associated pro 99.35
1v5o_A102 1700011N24RIK protein; hypothetical protein, ubiqu 99.34
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 99.34
4dbg_A105 Ranbp-type and C3HC4-type zinc finger-containing; 99.33
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 99.33
3q3f_A189 Ribonuclease/ubiquitin chimeric protein; domain SW 99.32
3u5e_m128 60S ribosomal protein L40; translation, ribosome, 99.32
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 99.31
1x1m_A107 Ubiquitin-like protein SB132; structural genomics, 99.3
1we7_A115 SF3A1 protein; structural genomics, ubiquitin-like 99.3
1wgg_A96 Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti 99.3
2kj6_A97 Tubulin folding cofactor B; methods development, N 99.29
2kd0_A85 LRR repeats and ubiquitin-like domain-containing p 99.29
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 99.27
3u5c_f152 40S ribosomal protein S31; translation, ribosome, 99.27
1wxv_A92 BAG-family molecular chaperone regulator-1; struct 99.26
1v5t_A90 8430435I17RIK protein; hypothetical protein, ubiqu 99.25
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 99.25
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 99.25
2daf_A118 FLJ35834 protein; hypothetical protein FLJ35834, u 99.24
4b6w_A86 Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik 99.21
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 99.19
2dzj_A88 Synaptic glycoprotein SC2; ubiquitin-like fold, st 99.18
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 99.17
2dzm_A100 FAS-associated factor 1; ubiquitin-like domain, HF 99.17
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 99.17
1oqy_A368 HHR23A, UV excision repair protein RAD23 homolog A 99.16
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 99.15
1v86_A95 DNA segment, CHR 7, wayne state university 128, ex 99.15
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 99.14
3ai5_A307 Yeast enhanced green fluorescent protein, ubiquit; 99.14
2kjr_A95 CG11242; UBL, ubiquitin, ubiquitin-like, structura 99.13
2xzm_9189 RPS31E; ribosome, translation; 3.93A {Tetrahymena 99.13
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 99.03
2kj6_A97 Tubulin folding cofactor B; methods development, N 99.03
1wf9_A107 NPL4 family protein; beta-grAsp fold like domain, 99.02
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 98.99
1v6e_A95 Cytoskeleton-associated protein 1; tubulin-specifi 98.97
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 98.96
2io1_B94 Small ubiquitin-related modifier 3 precursor; SUMO 98.96
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 98.92
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 98.92
1t0y_A122 Tubulin folding cofactor B; ubiquitin-like, cytosk 98.91
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 98.9
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 98.89
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 98.89
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 98.87
2kzr_A86 Ubiquitin thioesterase OTU1; structural genomics, 98.85
1wm3_A72 Ubiquitin-like protein SMT3B; ubiquitin fold, half 98.83
2io0_B91 Small ubiquitin-related modifier 2 precursor; SUMO 98.82
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 98.82
3shq_A320 UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila 98.78
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 98.72
2d07_B93 Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho 98.71
2eke_C106 Ubiquitin-like protein SMT3; UBC9, SUMO binding mo 98.62
1wz0_A104 Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li 98.62
1wjn_A97 Tubulin-folding protein TBCE; ubiquitin-like domai 98.54
2k8h_A110 Small ubiquitin protein; SUMO, post-translational 98.53
3pge_A200 SUMO-modified proliferating cell nuclear antigen; 98.35
3tix_A207 Ubiquitin-like protein SMT3, RNA-induced transcri 98.29
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 98.25
3kyd_D115 Small ubiquitin-related modifier 1; SUMO, thioeste 98.16
1cja_A342 Protein (actin-fragmin kinase); transferase; HET: 98.13
3v7o_A227 Minor nucleoprotein VP30; ssgcid, seattle structur 97.99
4efo_A94 Serine/threonine-protein kinase TBK1; ubiquitin li 97.91
2pjh_A80 Protein NPL4, nuclear protein localization protein 97.86
3pge_A200 SUMO-modified proliferating cell nuclear antigen; 97.81
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 97.69
3tix_A207 Ubiquitin-like protein SMT3, RNA-induced transcri 97.67
2pjh_A80 Protein NPL4, nuclear protein localization protein 97.62
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 97.54
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 97.38
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 97.29
3v7o_A227 Minor nucleoprotein VP30; ssgcid, seattle structur 97.27
2jxx_A97 Nfatc2-interacting protein; nuclear factor of acti 97.27
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 97.25
4efo_A94 Serine/threonine-protein kinase TBK1; ubiquitin li 97.23
2l76_A95 Nfatc2-interacting protein; ubiquitin-like domain, 97.11
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 97.01
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 96.91
2jxx_A97 Nfatc2-interacting protein; nuclear factor of acti 96.85
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 96.83
2bps_A81 YUKD protein; ubiquitin-like protein, ubiquitin; 2 96.54
2l76_A95 Nfatc2-interacting protein; ubiquitin-like domain, 96.31
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 96.29
2al3_A90 TUG long isoform; TUG UBL1 insulin, endocytosis/ex 96.22
3akj_A325 CTKA; protein kinase, transferase; 2.00A {Helicoba 96.2
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 96.13
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 95.51
2bps_A81 YUKD protein; ubiquitin-like protein, ubiquitin; 2 95.5
2kc2_A128 Talin-1, F1; FERM, adhesion, cell membrane, cell p 95.3
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 94.79
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 94.37
2r2o_A138 Plexin-B1; effector domain, structural genomics, s 93.92
4e71_A111 Plexin-B2, MM1; transmembrane, signaling, RBD, str 93.39
3qx1_A84 FAS-associated factor 1; UBX, protein binding, P97 93.05
2x6h_A696 GH13170P, VPS34, phosphotidylinositol 3 kinase 59F 92.89
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 91.44
3ls8_A614 Phosphatidylinositol 3-kinase catalytic subunit ty 91.13
3jyu_A231 Ubiquitin carboxyl-terminal hydrolase; domain in u 90.69
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 90.45
4a3p_A217 Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H 90.3
3h6n_A127 Plexin-D1; structural genomics consortium, SGC, me 89.58
2wxf_A940 Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca 89.5
1wj4_A124 KIAA0794 protein; UBX domain, beta-grAsp fold, str 89.37
2dzk_A109 UBX domain-containing protein 2; ubiquitin-like fo 89.14
4e74_A117 Plexin-A4; RBD, structural genomics, structural ge 88.49
4e71_A111 Plexin-B2, MM1; transmembrane, signaling, RBD, str 88.39
2daj_A91 KIAA0977 protein, COBL-like 1; ubiquitin-like doma 88.38
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 87.29
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 87.15
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 87.09
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 86.62
2ylm_A530 Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 86.3
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 85.85
3hhm_A1091 Phosphatidylinositol-4,5-bisphosphate 3-kinase cat 85.7
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 85.08
2r2o_A138 Plexin-B1; effector domain, structural genomics, s 84.2
2cr5_A109 Reproduction 8; UBX domain, D0H8S2298E protein, st 83.05
2y3a_A1092 Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca 82.97
2juo_A89 GA-binding protein alpha chain; OST, ubiquitin, tr 82.71
1s3s_G127 P47 protein; AAA ATPase, protein-protein complex, 82.58
3h6n_A127 Plexin-D1; structural genomics consortium, SGC, me 81.69
1e7u_A961 Phosphatidylinositol 3-kinase catalytic subunit; p 81.41
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
Probab=99.98  E-value=4e-32  Score=258.21  Aligned_cols=154  Identities=26%  Similarity=0.470  Sum_probs=145.0

Q ss_pred             CCCCCCcEEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeee
Q 008120           23 GRSSSESILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLK  101 (577)
Q Consensus        23 ~~~~~~sM~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~Lvlr  101 (577)
                      ++.+...|+|+| +++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|+++
T Consensus        14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEEC
T ss_pred             CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeec
Confidence            444578899999 589999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             eccccccccccCCCceeEEeeccCCchhhhHHHHHhhCCCCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 008120          102 LSDLLLITVRTSCGKELEFHIDRYRNVGYLKQRIARKGKGFVDVVDQEIFCDGEKLDDQRLIDDICKDNDAVIHLLVQ  179 (577)
Q Consensus       102 Lsd~m~I~Vrt~~Gk~~~i~Vd~~~TV~~LK~kI~~~~gi~~p~~~QrLif~Gr~LeD~~tLsdy~I~~~svI~Lvvr  179 (577)
                      +.++|.|+|++.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|.++|++|+|+++++|||++|
T Consensus        93 ~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r  168 (172)
T 3u30_A           93 LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  168 (172)
T ss_dssp             CCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred             ccccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999987  99999999999999999999999999999999876
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Back     alignment and structure
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Back     alignment and structure
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B Back     alignment and structure
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Back     alignment and structure
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Back     alignment and structure
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A Back     alignment and structure
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Back     alignment and structure
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Back     alignment and structure
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Back     alignment and structure
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Back     alignment and structure
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Back     alignment and structure
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Back     alignment and structure
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Back     alignment and structure
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Back     alignment and structure
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Back     alignment and structure
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f Back     alignment and structure
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Back     alignment and structure
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Back     alignment and structure
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Back     alignment and structure
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Back     alignment and structure
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Back     alignment and structure
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Back     alignment and structure
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Back     alignment and structure
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Back     alignment and structure
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 Back     alignment and structure
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3 Back     alignment and structure
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} Back     alignment and structure
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} Back     alignment and structure
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens} Back     alignment and structure
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis} Back     alignment and structure
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Back     alignment and structure
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A* Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis} Back     alignment and structure
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus} Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A Back     alignment and structure
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} Back     alignment and structure
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A Back     alignment and structure
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A Back     alignment and structure
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Back     alignment and structure
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens} Back     alignment and structure
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* Back     alignment and structure
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 Back     alignment and structure
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A Back     alignment and structure
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A* Back     alignment and structure
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens} Back     alignment and structure
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Back     alignment and structure
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A Back     alignment and structure
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2 Back     alignment and structure
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Back     alignment and structure
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus} Back     alignment and structure
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A Back     alignment and structure
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 577
d1v5oa_102 d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu 2e-12
d1zkha186 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t 9e-12
d1zkha186 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t 6e-04
d1wiaa_95 d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201 2e-10
d1wiaa_95 d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201 1e-04
d2bwfa173 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc 2e-10
d2bwfa173 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc 2e-05
d1wh3a_87 d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like 3e-10
d1wh3a_87 d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like 5e-06
d1bt0a_73 d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t 3e-10
d1bt0a_73 d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t 7e-08
d1v2ya_105 d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik 3e-10
d1ogwa_76 d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax 5e-10
d1ogwa_76 d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax 2e-07
d2zeqa178 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin 7e-10
d2zeqa178 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin 2e-06
d1z2ma276 d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot 1e-09
d1z2ma276 d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot 3e-08
d1wxva181 d.15.1.1 (A:7-87) Bag-family molecular chaperone r 2e-09
d1oqya477 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h 3e-09
d1oqya477 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h 3e-06
d1uela_95 d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol 3e-09
d1uela_95 d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol 2e-05
d2faza176 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing 4e-09
d1ttna180 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit 5e-09
d1ttna180 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit 2e-08
d1wx8a183 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul 1e-08
d1wx9a173 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 2e-08
d1wx9a173 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 3e-07
d1uh6a_100 d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous 2e-08
d1uh6a_100 d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous 2e-05
d1wy8a176 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing 3e-08
d1wgda_93 d.15.1.1 (A:) Homocysteine-responsive endoplasmic 2e-07
d1wgda_93 d.15.1.1 (A:) Homocysteine-responsive endoplasmic 7e-07
d1z2ma176 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei 2e-07
d1z2ma176 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei 4e-07
d1yqba184 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien 3e-07
d1t0ya_90 d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol 4e-07
d2c9wb1103 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) 4e-07
d1v6ea_95 d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol 2e-06
d1se9a_101 d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal 2e-06
d1x1ma194 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse 3e-06
d1x1ma194 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse 1e-04
d1j8ca_103 d.15.1.1 (A:) Ubiquitin-like N-terminal domain of 3e-06
d1wgha_116 d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous 4e-06
d1wgha_116 d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous 4e-06
d1euvb_79 d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea 5e-06
d1euvb_79 d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea 0.001
d1we6a_111 d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi 6e-06
d1m94a_73 d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 1e-05
d2uyzb177 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human 7e-05
d1v86a_95 d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous 8e-05
d1wjna_97 d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse 1e-04
d1v5ta_90 d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu 2e-04
d1wgga_96 d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas 8e-04
d1wgga_96 d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas 0.003
d1wjua_100 d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human 0.003
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 22  TGRSSSESILIYLSV---SGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGREL 78
           +  SS   I +Y      +     ++V     + + ++  +   G   ++ ++V+  + L
Sbjct: 2   SSGSSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLL 61

Query: 79  ARNHSLVKDYGVTGGNVLHLVLKLSDLLLITVRTSCG 115
             +H  +  YG+  G+++ L+ K +  L    RT  G
Sbjct: 62  TDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73 Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105 Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78 Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83 Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93 Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90 Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101 Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79 Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79 Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111 Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73 Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97 Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query577
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 99.72
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 99.71
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 99.71
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 99.71
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 99.71
d1bt0a_73 Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI 99.69
d2zeqa178 Ubiquitin-like domain of parkin {Mouse (Mus muscul 99.69
d1wh3a_87 2'-5'-oligoadenylate synthetase-like protein, OASL 99.68
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 99.67
d1z2ma276 Interferon-induced 15 kDa protein {Human (Homo sap 99.67
d2faza176 Ubiquitin-like PHD and RING finger domain-containi 99.66
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 99.66
d1ogwa_76 Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} 99.65
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.64
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 99.64
d1ttna180 Dendritic cell-derived ubiquitin-like protein {Hum 99.64
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 99.63
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 99.63
d1wx9a173 Large proline-rich protein BAT3 {Human (Homo sapie 99.63
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 99.62
d1wy8a176 Ubiquitin-like PHD and RING finger domain-containi 99.6
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 99.6
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 99.59
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 99.59
d1z2ma176 Interferon-induced 15 kDa protein {Human (Homo sap 99.58
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 99.58
d1uela_95 Ubiquitin-like domain of Rad23 homolog B (Hhr23B) 99.57
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 99.57
d2bwfa173 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.57
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 99.56
d1yqba184 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1oqya477 Ubiquitin-like domain of Rad23 homolog A (Hhr23a) 99.55
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 99.55
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 99.55
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 99.54
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 99.53
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 99.51
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 99.51
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 99.51
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 99.5
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 99.5
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 99.49
d1wx8a183 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 99.48
d1v5oa_102 1700011n24rik protein {Mouse (Mus musculus) [TaxId 99.47
d1wgha_116 Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu 99.46
d1se9a_101 Hypothetical protein At3g01050 {Thale cress (Arabi 99.46
d1wiaa_95 Ubiquitin-like protein bab25500 (2010008E23Rik) {M 99.46
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 99.44
d1zkha186 Splicing factor 3 subunit 1, C-terminal domain {Hu 99.42
d1v2ya_105 Ubiquitin-like protein 3300001g02rik {Mouse (Mus m 99.41
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 99.4
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 99.4
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 99.4
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 99.4
d1wgga_96 Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M 99.39
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 99.37
d1we6a_111 Splicing factor 3 subunit 1, C-terminal domain {Th 99.36
d2c9wb1103 Elongin B {Human (Homo sapiens) [TaxId: 9606]} 99.32
d1wjua_100 NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens 99.32
d1v5ta_90 8430435i17rik protein {Mouse (Mus musculus) [TaxId 99.3
d1wxva181 Bag-family molecular chaperone regulator-1 {Human 99.29
d1wgda_93 Homocysteine-responsive endoplasmic reticulum-resi 99.28
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 99.25
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 99.2
d2c9wb1103 Elongin B {Human (Homo sapiens) [TaxId: 9606]} 99.19
d1v86a_95 hypothetical D7wsu128e protein {Mouse (Mus musculu 99.18
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 99.17
d1v6ea_95 Ubiquitin-like domain of tubulin folding cofactor 99.12
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 99.03
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 98.97
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 98.95
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 98.91
d1x1ma194 Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta 98.91
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 98.89
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 98.84
d1t0ya_90 Ubiquitin-like domain of tubulin folding cofactor 98.71
d1wf9a194 NPL4-like protein 1 {Thale cress (Arabidopsis thal 97.81
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 97.77
d1wm3a_72 SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} 97.65
d1cjaa_342 Actin-fragmin kinase, catalytic domain {Physarum p 97.55
d1wf9a194 NPL4-like protein 1 {Thale cress (Arabidopsis thal 97.37
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 95.8
d2al3a176 Tether containing UBX domain for GLUT4 (Tug) {Mous 95.65
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 93.57
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 93.25
d1e7ua4369 Phoshoinositide 3-kinase (PI3K), catalytic domain 92.56
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.42
d1i42a_89 p47 {Rat (Rattus norvegicus) [TaxId: 10116]} 91.3
d1h8ca_82 Fas-associated factor 1, Faf1 {Human (Homo sapiens 89.48
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 89.0
d2cr5a196 UBX domain-containing protein 6 (Reproduction 8) { 87.62
d1wj4a_124 Hypothetical protein KIAA0794 {Human (Homo sapiens 82.27
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.7e-18  Score=138.90  Aligned_cols=75  Identities=32%  Similarity=0.617  Sum_probs=72.7

Q ss_pred             EEEEE-EeCCeEEEEEeCCCCCHHHHHHHHHHhhCCccccEEEEEcCeeccCCCCcccccccccccccceeeeeccc
Q 008120           30 ILIYL-SVSGSLVPMRVLETDSIESVKLRIQTCKGFVVKKQKLVFGGRELARNHSLVKDYGVTGGNVLHLVLKLSDL  105 (577)
Q Consensus        30 M~I~V-tl~G~~~~leV~~sdTV~~LK~kI~~~~Gip~~~QrLif~Gk~L~~D~~tL~dygI~dgstL~LvlrLsd~  105 (577)
                      |+|+| +++|++++++|++++||.+||++|+...|+|+++|+|+|+|++|. |+.+|++|||++|++|+|++|+++|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999 689999999999999999999999999999999999999999999 9999999999999999999999875
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]} Back     information, alignment and structure
>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure