Citrus Sinensis ID: 008152

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------
MLQCAKILATLTFNCRRVSSQLFRCQNTKPSSATNLRRICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYSW
cccHHHHHHHHHHccccccHHHHHccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEccccccHHHHHHHccccccccEEEEEEccEEEEccccccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHHcccHHHHHHHcccccccEEEEEEccEEEEccccccccccccccccccccccccccccccccccEEccccccccccccccHHccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEcccccccccccccEEEEcccccccccccEEcccccccccccEEEccccccccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccEEEEEcccccccc
cHHHHHHHHHHHHHHHHccccccccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEcccccccHHHHHHHHcHHHHHHHEEEEEccEEEccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEcEcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHccccEEEEHcccccccccEEEcccccHHcccccccccccHEEEEEHHHHccccccccccccccccccccccccccccccEHHHccEEEEEEEEEEccccHHHcEcccEccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEccccEccEcEEEEEEEcccccEEEEEEEEEEccHHHHccccEEcccccEccccEEEEEEEEEEHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHcHHccccEEEEEEcEEEEcc
MLQCAKILATLTFNCRRVssqlfrcqntkpssatnlrricampspnpvkdeeyLIKVIPKRISLFQSLQSEQQARLqslphdpikitlpdgsvkegkrwetspmdIAQGISKSLAANALISMVNGVlwdmtrpleadcdlklftfdsdegrdtfwHSSAHILGQAIEQQYgcklcigpcttrgegfyydafygdlglnpdhfksidSEADKAAKQPFERIEVTRDQALEmfsdnnfkveiindlpadktitvyrcgplvdlcrgphipntsfvkgfgclkassaywrgnkdreslqrvygisypdkkRLKHAFAELPLRLAdfgvlhrneasgaltgltrvrrfqqddahifcrESQIKDEVRGVLEFIDYAYRIFGFTYelklstrpekylgDLATWEKAEAALTEALNefgkpwqinegdgafygpkidisVSDALKRKFQCATlqldfqlpdrfnlgysaedeakterpVMIHRAILGSVERMFAILLEHykgkwpfwlsprqaivcpvseksqpyalQVRDHIyragyyvdvdttdrkiqkkvttsnfeiknphyfycpMLLVILPTVYYSW
MLQCAKILATLtfncrrvssqlfrcqntkpssatnlrricampspnpvkdeEYLIKVIPKRISLFQSLQSEQQARlqslphdpikitlpdgsvkegkrWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALemfsdnnfkveiindlpadktITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSaywrgnkdreslQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRneasgaltgltrvrrfQQDDAHifcresqikdevRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATlqldfqlpdRFNLGYsaedeakterpvMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGyyvdvdttdrkiqkkvttsnfeiknphyfycPMLLVILPTVYYSW
MLQCAKILATLTFNCRRVSSQLFRCQNTKPSSATNLRRICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYSW
***CAKILATLTFNCRRVSSQLFRCQ***********RICA*********EEYLIKVIPKRISLFQ***************************************IAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHF*****************IEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYS*
*******************************************************KVIPKRISLFQSLQSEQ***********IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYS*
MLQCAKILATLTFNCRRVSSQLFRCQNTKPSSATNLRRICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYSW
MLQCAKILATLTFNCRRVSSQLF*C*************************EEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYSW
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHi
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MLQCAKILATLTFNCRRVSSQLFRCQNTKPSSATNLRRICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPMLLVILPTVYYSW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query576 2.2.26 [Sep-21-2011]
O04630 709 Threonine--tRNA ligase, m yes no 0.472 0.383 0.735 1e-121
Q8GZ45458 Probable threonine--tRNA no no 0.409 0.515 0.691 8e-95
P04801734 Threonine--tRNA ligase, c yes no 0.418 0.328 0.613 4e-87
Q54J66710 Probable threonine--tRNA yes no 0.413 0.335 0.615 2e-85
Q0V9S0814 Probable threonine--tRNA yes no 0.435 0.308 0.575 4e-85
Q5XHY5695 Threonine--tRNA ligase, c yes no 0.404 0.335 0.617 9e-85
P52709725 Threonine--tRNA ligase, c yes no 0.409 0.325 0.609 1e-84
P26639723 Threonine--tRNA ligase, c yes no 0.418 0.333 0.599 1e-84
Q9D0R2722 Threonine--tRNA ligase, c yes no 0.404 0.322 0.613 4e-84
Q3ZBV8723 Threonine--tRNA ligase, c yes no 0.404 0.322 0.609 5e-84
>sp|O04630|SYTM_ARATH Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3 Back     alignment and function desciption
 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/276 (73%), Positives = 232/276 (84%), Gaps = 4/276 (1%)

Query: 39  ICAMPS--PNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEG 96
            C +P+   N  KDE YL  VIPKRI LF+ +Q+ Q   L+SLPHDPIK+TLPDG+VKEG
Sbjct: 28  FCTVPTMAANHPKDEAYLSAVIPKRIKLFEQIQANQLENLKSLPHDPIKVTLPDGNVKEG 87

Query: 97  KRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWH 156
           K+WET+PMDIA  ISK LA +ALIS V+ VLWDM RPLE DC L+LF FDSD+GRDT WH
Sbjct: 88  KKWETTPMDIAAQISKGLANSALISAVDDVLWDMNRPLEGDCKLELFKFDSDKGRDTLWH 147

Query: 157 SSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSI--DSEADKAAK 214
           SSAHILGQA+EQ+YGC+LCIGPCTTRGEGFYYD FYG+LGL+ +HF SI   +       
Sbjct: 148 SSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFYGELGLSDNHFPSIEAGAAKAAKEA 207

Query: 215 QPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVK 274
           QPFERIEVT+DQALEMFS+NNFKVE+IN LPAD TITVYRCGPLVDLCRGPHIPNTSFVK
Sbjct: 208 QPFERIEVTKDQALEMFSENNFKVELINGLPADMTITVYRCGPLVDLCRGPHIPNTSFVK 267

Query: 275 GFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLK 310
            F CL+ASSAYW+G+KDRESLQRVYGISYPD+K+LK
Sbjct: 268 AFKCLRASSAYWKGDKDRESLQRVYGISYPDQKQLK 303

Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 3
>sp|Q8GZ45|SYTC_ARATH Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g17960 PE=2 SV=2 Back     alignment and function description
>sp|P04801|SYTC_YEAST Threonine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THS1 PE=1 SV=2 Back     alignment and function description
>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1 Back     alignment and function description
>sp|Q0V9S0|SYTC2_XENTR Probable threonine--tRNA ligase 2, cytoplasmic OS=Xenopus tropicalis GN=tarsl2 PE=2 SV=1 Back     alignment and function description
>sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars PE=2 SV=1 Back     alignment and function description
>sp|P52709|SYTC_CAEEL Threonine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=trs-1 PE=2 SV=1 Back     alignment and function description
>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3 Back     alignment and function description
>sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1 SV=2 Back     alignment and function description
>sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
348535718629 PREDICTED: threonyl-tRNA synthetase, cyt 0.842 0.771 0.516 1e-151
54400362624 threonyl-tRNA synthetase, cytoplasmic is 0.842 0.777 0.515 1e-150
224099691 678 predicted protein [Populus trichocarpa] 0.463 0.393 0.825 1e-131
225424719 686 PREDICTED: threonyl-tRNA synthetase, mit 0.475 0.399 0.778 1e-126
255560023 691 threonyl-tRNA synthetase, putative [Rici 0.465 0.387 0.785 1e-125
296089916 686 unnamed protein product [Vitis vinifera] 0.475 0.399 0.775 1e-125
225461914 745 PREDICTED: threonyl-tRNA synthetase, mit 0.465 0.359 0.788 1e-125
449449092 724 PREDICTED: threonine--tRNA ligase, mitoc 0.527 0.419 0.693 1e-124
432105538649 Threonyl-tRNA synthetase, cytoplasmic [M 0.835 0.741 0.444 1e-124
357485977 711 Threonyl-tRNA synthetase [Medicago trunc 0.510 0.413 0.717 1e-124
>gi|348535718|ref|XP_003455346.1| PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like isoform 2 [Oreochromis niloticus] Back     alignment and taxonomy information
 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/519 (51%), Positives = 345/519 (66%), Gaps = 34/519 (6%)

Query: 58  IPKRISLFQSLQSEQQARLQ---SLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSL 114
           I +R++L+  L++E  A +    +    PIK+TLPDG V E + W+T+P  +A GIS+ L
Sbjct: 53  IEERLTLYTKLKAEHDALMAERAAKDSKPIKVTLPDGKVVEAESWKTTPYKVACGISQGL 112

Query: 115 AANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKL 174
           A N +I+ VN  +WD+ RPLE DC L+L  FD +E +  +WHSSAHI+G+A+E+ YG  L
Sbjct: 113 ADNTVIAKVNNSVWDLDRPLEEDCSLQLLKFDDEEAQAVYWHSSAHIMGEAMERVYGGCL 172

Query: 175 CIGPCTTRGEGFYYDAFY-GDLGLNPDHFKSIDSEADK--AAKQPFERIEVTRDQALEMF 231
           C GP    G  FYYD F   + G++ + F  ++S   K    KQPFER+E+ ++  LEMF
Sbjct: 173 CYGPPIENG--FYYDMFLENNEGVSSNDFPCLESLCKKIIKEKQPFERLEIKKETLLEMF 230

Query: 232 SDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKD 291
             N FK  I+N+     T TVYRCGPL+DLCRGPH+ +T  +K     K SS YW G  D
Sbjct: 231 KYNKFKCRILNEKVTTPTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNSSTYWEGKAD 290

Query: 292 RESLQRVYGISYPDKKRLKHAFA---------------------ELPLRLADFGVLHRNE 330
            E+LQR+YGIS+PD K LK  FA                     ELPLR+ADFGVLHRNE
Sbjct: 291 METLQRIYGISFPDPKMLKEIFALKPMNCPGHCLMFDHRPRSWRELPLRMADFGVLHRNE 350

Query: 331 ASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390
            SGALTGLTRVRRFQQDDAHIFC   QI+ E++G L+F+   Y +FGFT++L LSTRPEK
Sbjct: 351 LSGALTGLTRVRRFQQDDAHIFCSMDQIESEIKGCLDFLRTVYDVFGFTFKLNLSTRPEK 410

Query: 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLD 450
           +LGD   W++AE  L  +LNEFG+ W +N GDGAFYGPKIDI + DA+ R  QCAT+QLD
Sbjct: 411 FLGDPEVWDQAEKQLENSLNEFGEKWVLNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLD 470

Query: 451 FQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVC 510
           FQLP RFNL + + D    +RPV+IHRAILGSVERM AIL E+Y GKWP WLSPRQ +V 
Sbjct: 471 FQLPIRFNLTFVSHDGDDKKRPVIIHRAILGSVERMIAILTENYGGKWPLWLSPRQVMVV 530

Query: 511 PVSEKSQPYALQVRDHIYRAGYYVDVD-----TTDRKIQ 544
           PV    + YA +V+   + +G   DVD     T ++KI+
Sbjct: 531 PVGPTCEEYAEKVKQEFHSSGLMTDVDLDPSCTLNKKIR 569

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|54400362|ref|NP_001005932.1| threonyl-tRNA synthetase, cytoplasmic isoform 2 [Danio rerio] gi|53734186|gb|AAH83525.1| Zgc:92586 [Danio rerio] Back     alignment and taxonomy information
>gi|224099691|ref|XP_002311580.1| predicted protein [Populus trichocarpa] gi|222851400|gb|EEE88947.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424719|ref|XP_002265302.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial [Vitis vinifera] gi|296086530|emb|CBI32119.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255560023|ref|XP_002521030.1| threonyl-tRNA synthetase, putative [Ricinus communis] gi|223539867|gb|EEF41447.1| threonyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296089916|emb|CBI39735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461914|ref|XP_002265484.1| PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449449092|ref|XP_004142299.1| PREDICTED: threonine--tRNA ligase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|432105538|gb|ELK31735.1| Threonyl-tRNA synthetase, cytoplasmic [Myotis davidii] Back     alignment and taxonomy information
>gi|357485977|ref|XP_003613276.1| Threonyl-tRNA synthetase [Medicago truncatula] gi|355514611|gb|AES96234.1| Threonyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query576
TAIR|locus:2148538 709 AT5G26830 [Arabidopsis thalian 0.510 0.414 0.713 4.2e-219
TAIR|locus:2030918458 AT1G17960 [Arabidopsis thalian 0.404 0.508 0.700 6.5e-151
WB|WBGene00006617725 tars-1 [Caenorhabditis elegans 0.421 0.335 0.593 3.6e-148
UNIPROTKB|F1P372673 TARSL2 "Uncharacterized protei 0.409 0.350 0.607 4.4e-145
FB|FBgn0027081747 Aats-thr "Threonyl-tRNA synthe 0.406 0.313 0.655 5.5e-143
POMBASE|SPBC25H2.02703 trs1 "cytoplasmic threonine-tR 0.418 0.342 0.591 3.4e-141
CGD|CAL0000735706 THS1 [Candida albicans (taxid: 0.418 0.341 0.611 5.6e-141
UNIPROTKB|Q59LB4706 THS1 "Putative uncharacterized 0.418 0.341 0.611 5.6e-141
RGD|1359527695 Tars "threonyl-tRNA synthetase 0.418 0.346 0.603 7.1e-141
UNIPROTKB|Q5XHY5695 Tars "Threonine--tRNA ligase, 0.418 0.346 0.603 7.1e-141
TAIR|locus:2148538 AT5G26830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1126 (401.4 bits), Expect = 4.2e-219, Sum P(2) = 4.2e-219
 Identities = 214/300 (71%), Positives = 248/300 (82%)

Query:    17 RVSSQLFRCQNTKPSSATNLRR--ICAMPS--PNPVKDEEYLIKVIPKRISLFQSLQSEQ 72
             R++++  R   T  SS   L     C +P+   N  KDE YL  VIPKRI LF+ +Q+ Q
Sbjct:     4 RLTARSIRRFTTSSSSLPLLSSSSFCTVPTMAANHPKDEAYLSAVIPKRIKLFEQIQANQ 63

Query:    73 QARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTR 132
                L+SLPHDPIK+TLPDG+VKEGK+WET+PMDIA  ISK LA +ALIS V+ VLWDM R
Sbjct:    64 LENLKSLPHDPIKVTLPDGNVKEGKKWETTPMDIAAQISKGLANSALISAVDDVLWDMNR 123

Query:   133 PLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFY 192
             PLE DC L+LF FDSD+GRDT WHSSAHILGQA+EQ+YGC+LCIGPCTTRGEGFYYD FY
Sbjct:   124 PLEGDCKLELFKFDSDKGRDTLWHSSAHILGQALEQEYGCQLCIGPCTTRGEGFYYDGFY 183

Query:   193 GDLGLNPDHFKSIDSEADKAAK--QPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTI 250
             G+LGL+ +HF SI++ A KAAK  QPFERIEVT+DQALEMFS+NNFKVE+IN LPAD TI
Sbjct:   184 GELGLSDNHFPSIEAGAAKAAKEAQPFERIEVTKDQALEMFSENNFKVELINGLPADMTI 243

Query:   251 TVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLK 310
             TVYRCGPLVDLCRGPHIPNTSFVK F CL+ASSAYW+G+KDRESLQRVYGISYPD+K+LK
Sbjct:   244 TVYRCGPLVDLCRGPHIPNTSFVKAFKCLRASSAYWKGDKDRESLQRVYGISYPDQKQLK 303
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004829 "threonine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006435 "threonyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA
GO:0043039 "tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2030918 AT1G17960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00006617 tars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1P372 TARSL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0027081 Aats-thr "Threonyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
POMBASE|SPBC25H2.02 trs1 "cytoplasmic threonine-tRNA ligase Trs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
CGD|CAL0000735 THS1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59LB4 THS1 "Putative uncharacterized protein THS1" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
RGD|1359527 Tars "threonyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5XHY5 Tars "Threonine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04630SYTM_ARATH6, ., 1, ., 1, ., 30.73550.47220.3836yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.1.30.946
3rd Layer6.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VIII.2106.1
threonine-tRNA ligase (EC-6.1.1.3) (669 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VI2599
hypothetical protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between [...] (208 aa)
•     • 0.866
estExt_fgenesh4_pg.C_LG_XVIII0906
hypothetical protein; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between [...] (278 aa)
•     • 0.837
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•     • 0.833
gw1.XIX.1762.1
histidine-tRNA ligase (475 aa)
•  •  • 0.830
estExt_fgenesh4_pg.C_LG_II2313
hypothetical protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro ass [...] (126 aa)
•     • 0.798
gw1.28.724.1
histidine-tRNA ligase (EC-6.1.1.21) (441 aa)
•     • 0.792
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
      • 0.792
eugene3.114390001
Predicted protein (351 aa)
      • 0.787
gw1.64.262.1
aminoacyl-tRNA ligase (EC-6.1.1.5) (1028 aa)
   •  • 0.785
estExt_fgenesh4_pg.C_LG_IX0259
alanyl-tRNA synthetase (EC-6.1.1.7) (994 aa)
• •   • 0.769

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
PLN02908686 PLN02908, PLN02908, threonyl-tRNA synthetase 1e-174
PLN02908 686 PLN02908, PLN02908, threonyl-tRNA synthetase 1e-172
PRK00413638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 1e-127
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 1e-119
cd00771298 cd00771, ThrRS_core, Threonyl-tRNA synthetase (Thr 1e-117
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 1e-108
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 1e-105
PRK12444639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 2e-98
PRK00413 638 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed 3e-87
PLN02837614 PLN02837, PLN02837, threonine-tRNA ligase 7e-81
PRK14799545 PRK14799, thrS, threonyl-tRNA synthetase; Provisio 3e-72
PRK12444 639 PRK12444, PRK12444, threonyl-tRNA synthetase; Revi 3e-60
PRK12305 575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 8e-52
COG0441 589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 5e-44
TIGR00418 563 TIGR00418, thrS, threonyl-tRNA synthetase 7e-34
PRK03991613 PRK03991, PRK03991, threonyl-tRNA synthetase; Vali 5e-28
cd0166761 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threony 1e-25
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 3e-21
pfam0282460 pfam02824, TGS, TGS domain 2e-16
PLN02837 614 PLN02837, PLN02837, threonine-tRNA ligase 8e-16
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 3e-13
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 5e-11
smart0086343 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn 1e-10
pfam0797344 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt 6e-10
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 6e-10
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase Back     alignment and domain information 
 Score =  508 bits (1310), Expect = e-174
 Identities = 203/245 (82%), Positives = 220/245 (89%), Gaps = 3/245 (1%)

Query: 303 YPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEV 362
           +  + R   ++ ELPLRLADFGVLHRNE SGALTGLTRVRRFQQDDAHIFCRE QIKDEV
Sbjct: 391 FAHRVR---SYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEV 447

Query: 363 RGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGD 422
           +GVL+F+DY Y +FGFTYELKLSTRPEKYLGDL TW+KAEAALTEALN FGKPWQ+NEGD
Sbjct: 448 KGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGD 507

Query: 423 GAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGS 482
           GAFYGPKIDI+VSDALKRKFQCAT+QLDFQLP RF L YSAEDEAK ERPVMIHRAILGS
Sbjct: 508 GAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILGS 567

Query: 483 VERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRK 542
           VERMFAILLEHY GKWPFWLSPRQAIV P+SEKSQ YA +VR  ++ AG+YVDVD TDRK
Sbjct: 568 VERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRK 627

Query: 543 IQKKV 547
           IQKKV
Sbjct: 628 IQKKV 632

Length = 686
>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase Back     alignment and domain information
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|217243 pfam02824, TGS, TGS domain Back     alignment and domain information
>gnl|CDD|215450 PLN02837, PLN02837, threonine-tRNA ligase Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 576
PLN02908686 threonyl-tRNA synthetase 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
PRK08661 477 prolyl-tRNA synthetase; Provisional 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 99.97
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 99.96
PRK14894539 glycyl-tRNA synthetase; Provisional 99.93
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.93
PLN02734684 glycyl-tRNA synthetase 99.92
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 99.91
CHL00201430 syh histidine-tRNA synthetase; Provisional 99.9
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 99.89
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.88
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.83
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 99.81
PLN02530487 histidine-tRNA ligase 99.8
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.8
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 99.79
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.76
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 99.74
PRK01584594 alanyl-tRNA synthetase; Provisional 99.7
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.63
TIGR00344851 alaS alanine--tRNA ligase. The model describes ala 99.62
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.61
PRK00252865 alaS alanyl-tRNA synthetase; Reviewed 99.61
PRK12420423 histidyl-tRNA synthetase; Provisional 99.6
TIGR03683902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 99.58
PLN02900936 alanyl-tRNA synthetase 99.57
PRK13902900 alaS alanyl-tRNA synthetase; Provisional 99.56
TIGR00414418 serS seryl-tRNA synthetase. This model represents 99.56
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.55
PLN02972763 Histidyl-tRNA synthetase 99.53
PRK05431425 seryl-tRNA synthetase; Provisional 99.52
COG0013879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 99.51
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.51
PLN02961223 alanine-tRNA ligase 99.49
cd00862 202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 99.41
PRK00960517 seryl-tRNA synthetase; Provisional 99.37
PLN02320502 seryl-tRNA synthetase 99.36
COG2872241 Predicted metal-dependent hydrolases related to al 99.35
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.35
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.35
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.32
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.29
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 99.27
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.22
PLN02678448 seryl-tRNA synthetase 99.22
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.17
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.14
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.14
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 99.08
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 99.06
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 98.99
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 98.99
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 98.85
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 98.8
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 98.79
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 98.7
KOG0188895 consensus Alanyl-tRNA synthetase [Translation, rib 98.68
smart0086344 tRNA_SAD Threonyl and Alanyl tRNA synthetase secon 98.59
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 98.36
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 98.27
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 98.25
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 98.16
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.04
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 98.02
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.02
PRK07080317 hypothetical protein; Validated 97.94
KOG2105415 consensus Predicted metal-dependent hydrolase, con 97.93
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 97.59
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 97.52
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.12
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 97.1
PRK11092702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 96.64
COG0317701 SpoT Guanosine polyphosphate pyrophosphohydrolases 96.15
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 96.13
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 96.05
PRK0744070 hypothetical protein; Provisional 95.9
PRK0565966 sulfur carrier protein ThiS; Validated 95.77
PRK10872743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 95.75
TIGR00691683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 95.64
COG210468 ThiS Sulfur transfer protein involved in thiamine 95.55
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 95.26
PRK0836470 sulfur carrier protein ThiS; Provisional 94.98
PRK0769667 sulfur carrier protein ThiS; Provisional 94.48
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 94.42
PRK0694465 sulfur carrier protein ThiS; Provisional 94.3
PRK0805366 sulfur carrier protein ThiS; Provisional 94.28
PRK0648865 sulfur carrier protein ThiS; Validated 94.09
PRK0643767 hypothetical protein; Provisional 93.06
PRK0608384 sulfur carrier protein ThiS; Provisional 92.91
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 92.68
PF12745 273 HGTP_anticodon2: Anticodon binding domain of tRNAs 92.18
PRK0586365 sulfur carrier protein ThiS; Provisional 91.58
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 91.39
PRK11840326 bifunctional sulfur carrier protein/thiazole synth 87.99
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 87.96
PRK0177795 hypothetical protein; Validated 87.93
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 86.23
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 85.19
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 82.77
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 81.67
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=4.6e-115  Score=987.80  Aligned_cols=521  Identities=76%  Similarity=1.242  Sum_probs=500.7

Q ss_pred             ccccCCCCCCCChhhhhcchhhHHHHHHHHHHHHHHHhcCCCCCCeEEEeCCCcEEEeecCCCCHHHHHhhhccccccce
Q 008152           39 ICAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANA  118 (576)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~r~~~f~~~~~~~~~~~~~~~~~~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~  118 (576)
                      ..+..+....++|+|++    +|++||++++++|++++++++.++|+|++|||+++++++|+|||+|||+++++++++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~----~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~   86 (686)
T PLN02908         11 AAPSHPSDEEYLSAVIK----KRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSA   86 (686)
T ss_pred             hcccCCCCcCCCchhHH----HHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhc
Confidence            34566777889999999    99999999999999999988888999999999999999999999999999999999999


Q ss_pred             EEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCceEEEEEcCCCCCC
Q 008152          119 LISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLN  198 (576)
Q Consensus       119 v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL~~A~~~~fg~~l~ig~si~~~~Gfy~d~~~~~~~~t  198 (576)
                      |+|+|||++|||++||++||+|+|++|+|++|+++||||++|||++|++++||+++++||+++.++|||||+.+++.++|
T Consensus        87 v~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t  166 (686)
T PLN02908         87 LIAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLN  166 (686)
T ss_pred             EEEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999755899999986556799


Q ss_pred             HhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhccCcchhhhcccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccE
Q 008152          199 PDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGF  276 (576)
Q Consensus       199 ~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~~~~K~~Ll~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f  276 (576)
                      ++|+++|+++|+++|  |+||++.+||++||++||+++++|++|++++++++.|++|+||+|+|+|+||||||||+||.|
T Consensus       167 ~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gphv~sTg~ik~f  246 (686)
T PLN02908        167 EEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAF  246 (686)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCCCCCCCCcccee
Confidence            999999999999999  999999999999999999999999999998865678999999999999999999999999999


Q ss_pred             EEEeecceeecCCCCCCCceeEeccccCChhhhhh---------------------------------------------
Q 008152          277 GCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH---------------------------------------------  311 (576)
Q Consensus       277 ~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~---------------------------------------------  311 (576)
                      +|+++++|||+++.+++++|||||++||++++|++                                             
T Consensus       247 ~l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~  326 (686)
T PLN02908        247 ACLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNK  326 (686)
T ss_pred             EEEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHH
Confidence            99999999999999999999999999999999966                                             


Q ss_pred             ----------------------------------------------------------------------hhhcCCeeee
Q 008152          312 ----------------------------------------------------------------------AFAELPLRLA  321 (576)
Q Consensus       312 ----------------------------------------------------------------------s~relpl~l~  321 (576)
                                                                                            ||+++|++++
T Consensus       327 l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~  406 (686)
T PLN02908        327 LMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLA  406 (686)
T ss_pred             HHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHE
Confidence                                                                                  7889999999


Q ss_pred             eeccceeccccCCCccceecccccccCeeEEcCchhHHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCccCCChHHHHHH
Q 008152          322 DFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKA  401 (576)
Q Consensus       322 ~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e~~~~l~~~~~i~~~lG~~~~l~lstr~~~~~G~~~~~~~a  401 (576)
                      ++|.+||+|.+|.+.||+|+|+|+|+|+|+||+++|+.+|+.++++++.++|+.||++|++.+|+||++++|+.+.|+.|
T Consensus       407 ~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~a  486 (686)
T PLN02908        407 DFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKA  486 (686)
T ss_pred             EeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccCceecceeeecccCCceeeeEEeecCCCc-ccccEEEEeccc
Q 008152          402 EAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAK-TERPVMIHRAIL  480 (576)
Q Consensus       402 ~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~~~~tiqld~~~~~rf~l~y~~~~~g~-~~~P~ii~~a~~  480 (576)
                      +..|.++|+++|..|++++|+++|||||||+.+.|+++|.|||+|+|+||++|.+||+.|.+++ +. ..+|++||+|++
T Consensus       487 e~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~-~~~~~~pv~ihrai~  565 (686)
T PLN02908        487 EAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAED-EAKIERPVMIHRAIL  565 (686)
T ss_pred             HHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCC-CCcCCCCEEEEeCce
Confidence            9999999999999999999999999999999999999999999999999999999999998866 44 579999999999


Q ss_pred             ccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHHHHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEE
Q 008152          481 GSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYF  560 (576)
Q Consensus       481 GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iI  560 (576)
                      ||+||++++|.|+++|+||+|++|.||+|+|++++..++|.+|++.||++|++|++|.++.+++||+++|++.|+||++|
T Consensus       566 GsiERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kkir~A~~~g~~~vii  645 (686)
T PLN02908        566 GSVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKKVREAQLAQYNYILV  645 (686)
T ss_pred             EhHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecce
Q 008152          561 YCPM  564 (576)
Q Consensus       561 iGp~  564 (576)
                      +|+-
T Consensus       646 vG~~  649 (686)
T PLN02908        646 VGEA  649 (686)
T ss_pred             ECch
Confidence            9963

>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
3ugq_A460 Crystal Structure Of The Apo Form Of The Yeast Mito 6e-66
1evk_A401 Crystal Structure Of A Truncated Form Of Threonyl-T 8e-59
1qf6_A642 Structure Of E. Coli Threonyl-Trna Synthetase Compl 9e-59
1nyq_A645 Structure Of Staphylococcus Aureus Threonyl-Trna Sy 2e-50
3a32_A471 Crystal Structure Of Putative Threonyl-Trna Synthet 5e-33
3a31_A471 Crystal Structure Of Putative Threonyl-Trna Synthet 1e-31
1tje_A224 Crystal Structure Of The Editing Domain Of Threonyl 9e-30
1wwt_A88 Solution Structure Of The Tgs Domain From Human Thr 6e-16
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast Mitochondrial Threonyl- Trna Synthetase Determined At 2.1 Angstrom Resolution Length = 460 Back     alignment and structure 
Iteration: 1

 Score =  248 bits (633), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 153/215 (71%), Gaps = 11/215 (5%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
           ++ ELPLR +DF  LHRNEASGAL+GLTR+R+F QDD HIFC  SQ+K E+   L+ ID 
Sbjct: 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDI 203
Query: 372 AY-RIFGF---------TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421
            Y +IF F          Y +  STRP+ ++GDL  W  AE  L E L E GKPW++N G
Sbjct: 204 VYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPG 263
Query: 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG 481
           DGAFYGPK+DI V+D L++  Q AT+QLDFQLP+RF+L +  +D +  +RP+MIHRA  G
Sbjct: 264 DGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNS-YKRPIMIHRATFG 322
Query: 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKS 516
           S+ER  A+L++  +G+WPFWL+P QA++ PV+ K+
Sbjct: 323 SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKN 357
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna Synthetase With The Ligand Threonine Length = 401 Back     alignment and structure
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed With Its Cognate Trna Length = 642 Back     alignment and structure
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 Back     alignment and structure
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase Thrrs-1 From Aeropyrum Pernix Length = 471 Back     alignment and structure
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase Thrrs-1 From Aeropyrum Pernix (Selenomethionine Derivative) Length = 471 Back     alignment and structure
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna Synthetase Length = 224 Back     alignment and structure
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl- Trna Synthetase Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query576
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 1e-144
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 1e-130
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 1e-126
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 1e-84
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 1e-121
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 3e-88
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 1e-111
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 3e-85
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 2e-44
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 6e-28
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 1e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 8e-04
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Length = 460 Back     alignment and structure
 Score =  424 bits (1092), Expect = e-144
 Identities = 117/260 (45%), Positives = 160/260 (61%), Gaps = 28/260 (10%)

Query: 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYR 374
           ELPLR +DF  LHRNEASGAL+GLTR+R+F QDD HIFC  SQ+K E+   L+ ID  Y 
Sbjct: 147 ELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYN 206

Query: 375 -IFGFT---------YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGA 424
            IF F          Y +  STRP+ ++GDL  W  AE  L E L E GKPW++N GDGA
Sbjct: 207 KIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGA 266

Query: 425 FYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVE 484
           FYGPK+DI V+D L++  Q AT+QLDFQLP+RF+L +  +D +  +RP+MIHRA  GS+E
Sbjct: 267 FYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNSY-KRPIMIHRATFGSIE 325

Query: 485 RMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRD-----------------HI 527
           R  A+L++  +G+WPFWL+P QA++ PV+ K+                           +
Sbjct: 326 RFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPL 385

Query: 528 YRAGYYVDVDTTDRKIQKKV 547
               + VD+D  +  +  ++
Sbjct: 386 NDWHFNVDLDIRNEPVGYRI 405
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1tke_A224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 99.98
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 99.98
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 99.98
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 99.97
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 99.97
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 99.97
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.97
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.97
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 99.96
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 99.95
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 99.94
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 99.91
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 99.91
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 99.91
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 99.89
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 99.86
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 99.84
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 99.81
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 99.81
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 99.81
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.78
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.77
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 99.75
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.73
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 99.68
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 99.65
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 99.65
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.52
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.51
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 99.5
3err_A536 Fusion protein of microtubule binding domain from 99.5
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 99.45
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.43
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.28
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 99.14
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.11
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 98.94
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 98.89
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 98.47
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 98.42
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 97.09
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 95.31
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 95.08
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 94.74
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 94.28
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 94.19
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 93.59
2cu3_A64 Unknown function protein; thermus thermophilus HB8 93.41
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 93.32
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 88.87
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 85.91
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 85.32
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 81.13
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 81.07
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
Probab=100.00  E-value=2.3e-102  Score=879.12  Aligned_cols=477  Identities=41%  Similarity=0.722  Sum_probs=457.2

Q ss_pred             CeEEEeCCCcEEEeecCCCCHHHHHhhhccccccceEEEEECCEEeeccccccCCCcEEEeecCChhhhHHHHHHHHHHH
Q 008152           83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL  162 (576)
Q Consensus        83 ~I~v~l~dg~~~~~~~~~ttp~dia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~ve~l~~~~~eG~~vy~hS~ahlL  162 (576)
                      +|+||+|||++++++. +|||+|||++|++++++.+++|+|||++|||++||+.||+|++++|+|++|++++|||++|||
T Consensus         1 ~~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL   79 (642)
T 1qf6_A            1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL   79 (642)
T ss_dssp             -CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHH
T ss_pred             CceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHH
Confidence            3899999999999987 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEeCHHHHHHhhcc--Ccch
Q 008152          163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK  237 (576)
Q Consensus       163 ~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~vs~eeA~~lF~~--~~~K  237 (576)
                      ++|++++| ++++++||+++  +||||||+. +.++|++|+++||++|+++|  |+||++.++|++||+++|++  ++||
T Consensus        80 ~~Al~~~~~~~~~~~G~~i~--~gfy~Df~~-~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk  156 (642)
T 1qf6_A           80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK  156 (642)
T ss_dssp             HHHHHHHCTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCCcEEEECCccC--CeeEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcch
Confidence            99999999 67999999999  999999987 56899999999999999999  99999999999999999987  7899


Q ss_pred             hhhc-ccCCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEeccccCChhhhhh-----
Q 008152          238 VEII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-----  311 (576)
Q Consensus       238 ~~Ll-~~~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiyg~~fp~~~~L~~-----  311 (576)
                      ++|+ +.+|.++.|++|+||+|+|+|+||||||||+|+.|+|++.+++||+++.++..+||+||++||+++.|.+     
T Consensus       157 ~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~  236 (642)
T 1qf6_A          157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRL  236 (642)
T ss_dssp             HHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHH
T ss_pred             hhhhhcccCCCCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhh
Confidence            9999 7776667899999999999999999999999999999999999999999999999999999999997732     


Q ss_pred             --------------------------------------------------------------------------------
Q 008152          312 --------------------------------------------------------------------------------  311 (576)
Q Consensus       312 --------------------------------------------------------------------------------  311 (576)
                                                                                                      
T Consensus       237 eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~  316 (642)
T 1qf6_A          237 EEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA  316 (642)
T ss_dssp             HHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGG
T ss_pred             hccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccc
Confidence                                                                                            


Q ss_pred             ------------------------------hhhcCCeeeeeeccceeccccCCCccceecccccccCeeEEcCchhHHHH
Q 008152          312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE  361 (576)
Q Consensus       312 ------------------------------s~relpl~l~~vg~l~R~e~~g~l~gLiRvreF~q~da~iF~~~~~~~~e  361 (576)
                                                    +|+++|++++++|.+||+|.+|...||+|+|||+|+|+|+||+++++++|
T Consensus       317 my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e  396 (642)
T 1qf6_A          317 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE  396 (642)
T ss_dssp             CEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHH
T ss_pred             ceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHH
Confidence                                          78899999999999999999987899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCC-eEEEEEccCCCccCCChHHHHHHHHHHHHHHHHcCCCcEEcCCCCcccccceeEEEeccccC
Q 008152          362 VRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR  440 (576)
Q Consensus       362 ~~~~l~~~~~i~~~lG~-~~~l~lstr~~~~~G~~~~~~~a~~~L~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr  440 (576)
                      +.++++++.++|+.||+ ++.+.++++|++++|+.+.|+.|++.++++|+..|++|++++|+++||||++|+.+.|++|+
T Consensus       397 ~~~~i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~  476 (642)
T 1qf6_A          397 VNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDR  476 (642)
T ss_dssp             HHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCc
Confidence            99999999999999999 59999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecceeeecccCCceeeeEEeecCCCcccccEEEEecccccHHHHHHHHHHhcCCCCCCCCCCceEEEEeCCCChHHHH
Q 008152          441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYA  520 (576)
Q Consensus       441 ~~~~~tiqld~~~~~rf~l~y~~~~~g~~~~P~ii~~a~~GgiERlia~L~E~~~g~~P~~laP~qV~Vipv~~~~~~~a  520 (576)
                      .|+|+|+|+||+++.|||+.|.+.+ |++.+|+|+|++++||+||++++|+|+++|.||+|+||+||+|+|++++..++|
T Consensus       477 ~~~~gti~~df~l~~r~~~~y~~~~-g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a  555 (642)
T 1qf6_A          477 AWQCGTVQLDFSLPSRLSASYVGED-NERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYV  555 (642)
T ss_dssp             EEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHH
T ss_pred             eEEeeeEEEeccCCccCCCEEEecC-CCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHH
Confidence            9999999999999999999998877 778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEeCCCCcHHHHHHHhHhcCCceEEEecce
Q 008152          521 LQVRDHIYRAGYYVDVDTTDRKIQKKVTTSNFEIKNPHYFYCPM  564 (576)
Q Consensus       521 ~~i~~~Lr~~Gi~v~vD~~~~slgkkir~A~~~g~p~~iIiGp~  564 (576)
                      .+|++.|+++|++|++|+++.++|+|||+|++.|+||++|||+-
T Consensus       556 ~~v~~~L~~~Gi~v~~D~~~~~~g~kir~a~~~g~p~~ivvG~~  599 (642)
T 1qf6_A          556 NELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDK  599 (642)
T ss_dssp             HHHHHHHHTTTCCEEEECCSSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred             HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECch
Confidence            99999999999999999999999999999999999999999873
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 576
d1qf6a4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 1e-60
d1nyra4291 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (Th 2e-44
d1nyra3179 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR 3e-44
d1tkea2162 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR 1e-34
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 9e-25
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 2e-22
d1tkea162 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS 1e-15
d1nyra259 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS 2e-14
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 5e-14
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 7e-13
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 3e-10
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 8e-10
d1nj1a3265 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS 5e-09
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 6e-07
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 8e-07
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 1e-05
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 1e-04
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 0.001
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 0.003
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 0.003
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 0.004
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Escherichia coli [TaxId: 562]

 Score =  200 bits (510), Expect = 1e-60
 Identities = 102/237 (43%), Positives = 134/237 (56%), Gaps = 6/237 (2%)

Query: 265 PHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPD----KKRLKHAFAELPLRL 320
           P + +    +  G                    +  ++ P       +   ++ +LPLR+
Sbjct: 55  PFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRM 114

Query: 321 ADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT- 379
           A+FG  HRNE SG+L GL RVR F QDDAHIFC E QI+DEV G +  +   Y  FGF  
Sbjct: 115 AEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEK 174

Query: 380 YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALK 439
             +KLSTRPEK +G    W++AEA L  AL E   P++   G+GAFYGPKI+ ++ D L 
Sbjct: 175 IVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLD 234

Query: 440 RKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKG 496
           R +QC T+QLDF LP R +  Y  ED  +   PVMIHRAILGS+ER   IL E + G
Sbjct: 235 RAWQCGTVQLDFSLPSRLSASYVGEDNERK-VPVMIHRAILGSMERFIGILTEEFAG 290
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Length = 291 Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 Back     information, alignment and structure
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 265 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query576
d1tkea2162 Threonyl-tRNA synthetase (ThrRS), second 'addition 100.0
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.88
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 99.8
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.78
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.77
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.7
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.69
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.64
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.63
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.61
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.56
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.53
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.5
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.44
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.43
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.43
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.42
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.38
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.15
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.13
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.13
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.1
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 98.96
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 98.22
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 97.98
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 97.63
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 97.31
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.01
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 96.78
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 96.1
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 94.58
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 92.32
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 87.24
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 84.9
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-40  Score=306.58  Aligned_cols=155  Identities=35%  Similarity=0.693  Sum_probs=145.1

Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHHh-CCeEEecCccccCCceEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCEEEEEe
Q 008152          146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEV  222 (576)
Q Consensus       146 ~~~eG~~vy~hS~ahlL~~A~~~~f-g~~l~ig~si~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI--~~pi~r~~v  222 (576)
                      .|++|.++||||++|||++|++++| ++++.+||+++  +||||||.. +.+++++|+.+||++|+++|  ++||++.++
T Consensus         1 kd~egl~v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~--~GfyyD~~~-~~~~~~edl~~ie~~m~~ii~~~~~~~~~~~   77 (162)
T d1tkea2           1 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKV   77 (162)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEeccccC--CeEEEEeec-cCCCCHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence            4689999999999999999999999 89999999999  999999986 67899999999999999999  999999999


Q ss_pred             CHHHHHHhhccCcc--hhhhccc-CCCCCcEEEEEeCCeecccCCCCCCCCCCcccEEEEeecceeecCCCCCCCceeEe
Q 008152          223 TRDQALEMFSDNNF--KVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY  299 (576)
Q Consensus       223 s~eeA~~lF~~~~~--K~~Ll~~-~~~~~~v~vy~~g~~~D~c~Gphvp~Tg~Ik~f~l~~~~~g~~L~~p~~~~lqRiy  299 (576)
                      ++++|+++|..+++  |..++.. .+.+..+++|+||+|+|+|+||||||||.|+.|+|++.+++||+|++++++|||||
T Consensus        78 s~~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~~~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiy  157 (162)
T d1tkea2          78 SWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIY  157 (162)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEE
T ss_pred             chHHHHHHHHHhhcchhhheeeccccccccceeeccCceEeecCCCccccCcccceEEEEEechhhcCCCCCCcccEEEE
Confidence            99999999998664  7677765 33567899999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 008152          300 GISY  303 (576)
Q Consensus       300 g~~f  303 (576)
                      |++|
T Consensus       158 g~af  161 (162)
T d1tkea2         158 GTAW  161 (162)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9998
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure